Query 033681
Match_columns 113
No_of_seqs 120 out of 817
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 08:01:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033681.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033681hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1oxw_A Patatin; alpha/beta cla 99.9 9.4E-26 3.2E-30 174.4 10.0 108 5-112 106-215 (373)
2 4akf_A VIPD; transferase; 2.90 99.6 1.7E-16 5.7E-21 127.7 4.8 64 35-111 237-301 (577)
3 3tu3_B EXOU; type III secretio 99.4 1.3E-13 4.3E-18 112.4 5.8 92 13-109 272-377 (711)
4 2jr2_A UPF0352 protein CPS_261 49.0 14 0.00047 22.0 2.6 19 7-25 3-21 (76)
5 2juw_A UPF0352 protein SO_2176 47.7 15 0.00051 22.1 2.6 19 7-25 3-21 (80)
6 2jpq_A UPF0352 protein VP2129; 47.5 15 0.00051 22.2 2.6 19 7-25 3-21 (83)
7 2jrx_A UPF0352 protein YEJL; h 47.3 14 0.00049 22.3 2.5 19 7-25 3-21 (83)
8 2juz_A UPF0352 protein HI0840; 47.1 15 0.00051 22.0 2.5 19 7-25 3-21 (80)
9 3da5_A Argonaute; PAZ domain, 39.6 34 0.0012 21.7 3.4 41 12-52 18-61 (128)
10 1eer_A Erythropoietin; signal 23.3 42 0.0014 22.8 1.9 37 8-44 4-47 (166)
11 1v7m_V Thrombopoietin; FAB fra 22.7 44 0.0015 22.7 1.9 37 8-44 4-47 (163)
No 1
>1oxw_A Patatin; alpha/beta class fold with approximately three layers; 2.20A {Solanum cardiophyllum} SCOP: c.19.1.3
Probab=99.93 E-value=9.4e-26 Score=174.44 Aligned_cols=108 Identities=35% Similarity=0.542 Sum_probs=94.5
Q ss_pred ccCccCCChHHHHHHHHHHhccccccccccceEEEEEecCCCccEEeeCCCCCcCCCCCccHHHHHhHhccCCCCcCceE
Q 033681 5 RSILSQCDGDYQHNKIMEMLVVKFLHQTLTDVIIPTFDIRLLQPISFSTLKAKRNASKVSWLSDNCIGTSAAPYYMPPYY 84 (113)
Q Consensus 5 ~~~~~~y~~~~l~~~L~~~~g~~~l~d~~~~v~i~a~di~~~~~~~f~~~~~~~~~~~~~~l~da~~ASsAaP~yF~p~~ 84 (113)
.+.+++|+++.|+++|++.||+.+|.|+.++++|+++|+.++++++|++++...++..+.++|||+|||||+|+||||++
T Consensus 106 ~l~~~~~~~~~L~~~l~~~~~~~~l~d~~~~~~i~atd~~~~~~~~f~~~~~~~~~~~~~~l~~av~ASsA~P~~F~p~~ 185 (373)
T 1oxw_A 106 QILGPKYDGKYLMQVLQEKLGETRVHQALTEVVISSFDIKTNKPVIFTKSNLANSPELDAKMYDISYSTAAAPTYFPPHY 185 (373)
T ss_dssp CSSSCSCCCHHHHHHHHHHHTTCBGGGCSSEEEEEEEETTTTEEEEEESSSTTTCGGGCCBHHHHHHHHHCCTTTSCCEE
T ss_pred ccccCCcCcHHHHHHHHHHHCcCcHHHcCCCEEEEeEECCCCCeEEEeCCCCCCCCccCchHHHHHHHHccCCcCcCcEE
Confidence 35678999999999999999999999999999999999999999999999865555668899999999999999999999
Q ss_pred EEecCCCCC-eeeeEecceeec-CCCCCcC
Q 033681 85 FEMHASTGT-KKFNLVDGVVAA-NIPVSFS 112 (113)
Q Consensus 85 ~~~~~~~g~-~~~~~vDGGl~a-NnP~~~~ 112 (113)
+.+.+.+|. .++.|||||+.+ |||+..|
T Consensus 186 i~~~d~~G~~~~~~~vDGGv~~~NnP~~~a 215 (373)
T 1oxw_A 186 FVTNTSNGDEYEFNLVDGAVATVADPALLS 215 (373)
T ss_dssp EEEECTTSCEEEEEEEEGGGGTCSSCHHHH
T ss_pred eeccCCCCcccceeeecCcccccCChHHHH
Confidence 976543342 246899999999 9998754
No 2
>4akf_A VIPD; transferase; 2.90A {Legionella pneumophila}
Probab=99.63 E-value=1.7e-16 Score=127.70 Aligned_cols=64 Identities=13% Similarity=0.066 Sum_probs=55.1
Q ss_pred ceEEEEEecCCCccEEeeCCCCCcCCCCCccHHHHHhHhccCCCCcCceE-EEecCCCCCeeeeEecceeecCCCCCc
Q 033681 35 DVIIPTFDIRLLQPISFSTLKAKRNASKVSWLSDNCIGTSAAPYYMPPYY-FEMHASTGTKKFNLVDGVVAANIPVSF 111 (113)
Q Consensus 35 ~v~i~a~di~~~~~~~f~~~~~~~~~~~~~~l~da~~ASsAaP~yF~p~~-~~~~~~~g~~~~~~vDGGl~aNnP~~~ 111 (113)
++.|+++|+.+|++++|++... .+..++||+|||||+|++|+|+. ++ ...|+|||+.+|+|+..
T Consensus 237 ~L~IvATDv~TGk~v~F~~~~~-----~d~~l~dAVRASsAlP~~F~PV~~Id--------G~~yvDGGV~~N~PV~~ 301 (577)
T 4akf_A 237 NLSVVVTNQTKHELERYSEDTT-----PQQSIAQVVQWSGAHPVLFVPGRNAK--------GEYIADGGILDNMPEIE 301 (577)
T ss_dssp EEEEEEEETTTTEEEEEETTTC-----TTSBHHHHHHHHTCCTTTBCCEECTT--------CCEEECTTSSSCCCCCT
T ss_pred eEEEEEEECCCCCEEEeCCCCC-----CCCCHHHHHHHHhCccccccCEEeEC--------CEEEECCCcccCCchHH
Confidence 7999999999999999997632 25679999999999999999994 52 34799999999999863
No 3
>3tu3_B EXOU; type III secretion system, SPC infectious diseases, structural genomics, center for struct genomics of infectious diseases, csgid; 1.92A {Pseudomonas aeruginosa} PDB: 4akx_B*
Probab=99.42 E-value=1.3e-13 Score=112.43 Aligned_cols=92 Identities=12% Similarity=0.042 Sum_probs=47.9
Q ss_pred hHHHHHHHHHHhc--cccccccc---------cceEEEEEecCCCcc--EEeeCCCCCcCCCCCccHHHHHhHhccCCCC
Q 033681 13 GDYQHNKIMEMLV--VKFLHQTL---------TDVIIPTFDIRLLQP--ISFSTLKAKRNASKVSWLSDNCIGTSAAPYY 79 (113)
Q Consensus 13 ~~~l~~~L~~~~g--~~~l~d~~---------~~v~i~a~di~~~~~--~~f~~~~~~~~~~~~~~l~da~~ASsAaP~y 79 (113)
+..++.+++++.+ +.++.|+. +.+.|+++|+.++++ ++|..... .+..+|+|+|||||+|+|
T Consensus 272 ~~~l~~Ll~rL~~~~~ITF~dL~~L~~~~P~~k~L~IvATNL~TGkpelvyFs~~~t-----Pd~~I~dAVRASsSlP~v 346 (711)
T 3tu3_B 272 QPTVAAIASRLQSGSGVTFGDLDRLSAYIPQIKTLNITGTAMFEGRPQLVVFNASHT-----PDLEVAQAAHISGSFPGV 346 (711)
T ss_dssp SHHHHHHHHHHHTTCCCBHHHHHHHHTTCTTSCEEEEEEEEEETTEEEEEEESTTTC-----TTSBHHHHHHHHHHCC--
T ss_pred chhHHHHHHHhcCCCCCCHHHHHHHhhcCCCCceEEEEEEECCCCCcceEEeCCCCC-----CCchHHHHHHHHhccccc
Confidence 3444455555543 45555543 469999999999997 58865432 257899999999999999
Q ss_pred cCceEEEecC-CCCCeeeeEecceeecCCCC
Q 033681 80 MPPYYFEMHA-STGTKKFNLVDGVVAANIPV 109 (113)
Q Consensus 80 F~p~~~~~~~-~~g~~~~~~vDGGl~aNnP~ 109 (113)
|+|+.+.... ..+.....|+|||+.+|+|+
T Consensus 347 F~PV~I~G~~f~~~~e~~~YVDGGIsdNiPI 377 (711)
T 3tu3_B 347 FQKVSLSDQPYQAGVEWTEFQDGGVMINVPV 377 (711)
T ss_dssp --------------------------CCCCG
T ss_pred CCCEEECCccccccccCceEeecCcCCCcCH
Confidence 9999886430 00012237999999999998
No 4
>2jr2_A UPF0352 protein CPS_2611; dimer, all alpha helix, homodimer, structural genomics, PSI, structure initiative; NMR {Colwellia psychrerythraea} SCOP: a.284.1.1 PDB: 2ota_A
Probab=48.98 E-value=14 Score=21.98 Aligned_cols=19 Identities=21% Similarity=0.317 Sum_probs=16.9
Q ss_pred CccCCChHHHHHHHHHHhc
Q 033681 7 ILSQCDGDYQHNKIMEMLV 25 (113)
Q Consensus 7 ~~~~y~~~~l~~~L~~~~g 25 (113)
..+||+.+.+|++|.+++.
T Consensus 3 i~SKYsd~qvE~ll~eli~ 21 (76)
T 2jr2_A 3 IVSKYSNERVEKIIQDLLD 21 (76)
T ss_dssp CSCCSCHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHH
Confidence 3689999999999999985
No 5
>2juw_A UPF0352 protein SO_2176; homodimer, helix, dimer, all alpha, northeast structural GEN consortium, NESG, structural genomics; NMR {Shewanella oneidensis} SCOP: a.284.1.1 PDB: 2qti_A
Probab=47.71 E-value=15 Score=22.06 Aligned_cols=19 Identities=32% Similarity=0.340 Sum_probs=16.9
Q ss_pred CccCCChHHHHHHHHHHhc
Q 033681 7 ILSQCDGDYQHNKIMEMLV 25 (113)
Q Consensus 7 ~~~~y~~~~l~~~L~~~~g 25 (113)
..+||+.+.+|++|.+++.
T Consensus 3 i~SKYsd~qvE~ll~eli~ 21 (80)
T 2juw_A 3 IQSKYSNTQVESLIAEILV 21 (80)
T ss_dssp CCCSSCHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHH
Confidence 3689999999999999985
No 6
>2jpq_A UPF0352 protein VP2129; dimer, all alpha, homodimer, structural genomics, PSI-2, protein structure initiative; NMR {Vibrio parahaemolyticus} SCOP: a.284.1.1
Probab=47.47 E-value=15 Score=22.19 Aligned_cols=19 Identities=16% Similarity=0.221 Sum_probs=16.9
Q ss_pred CccCCChHHHHHHHHHHhc
Q 033681 7 ILSQCDGDYQHNKIMEMLV 25 (113)
Q Consensus 7 ~~~~y~~~~l~~~L~~~~g 25 (113)
..+||+.+.+|++|.+++.
T Consensus 3 i~SKYsd~qvE~ll~eli~ 21 (83)
T 2jpq_A 3 ITSKYTDEQVEKILAEVAL 21 (83)
T ss_dssp SSCCSCHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHH
Confidence 3689999999999999985
No 7
>2jrx_A UPF0352 protein YEJL; homodimer, alpha helix, structural genomics, PSI-2, protein initiative, northeast structural genomics consortium, NESG; NMR {Escherichia coli} SCOP: a.284.1.1
Probab=47.29 E-value=14 Score=22.25 Aligned_cols=19 Identities=16% Similarity=0.239 Sum_probs=16.9
Q ss_pred CccCCChHHHHHHHHHHhc
Q 033681 7 ILSQCDGDYQHNKIMEMLV 25 (113)
Q Consensus 7 ~~~~y~~~~l~~~L~~~~g 25 (113)
..+||+.+.+|++|.+++.
T Consensus 3 i~SKYsd~qvE~ll~eli~ 21 (83)
T 2jrx_A 3 QISRYSDEQVEQLLAELLN 21 (83)
T ss_dssp CTTCTTHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHH
Confidence 3689999999999999985
No 8
>2juz_A UPF0352 protein HI0840; homodimer, helix, structural genomics, PSI-2, protein structure initiative; NMR {Haemophilus influenzae} SCOP: a.284.1.1
Probab=47.07 E-value=15 Score=22.04 Aligned_cols=19 Identities=11% Similarity=0.083 Sum_probs=17.0
Q ss_pred CccCCChHHHHHHHHHHhc
Q 033681 7 ILSQCDGDYQHNKIMEMLV 25 (113)
Q Consensus 7 ~~~~y~~~~l~~~L~~~~g 25 (113)
..+||+.+.+|++|.+++.
T Consensus 3 i~SKYsd~qvE~ll~eli~ 21 (80)
T 2juz_A 3 QHSKYSDAQLSAIVNDMIA 21 (80)
T ss_dssp CCCCCCHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHH
Confidence 3689999999999999985
No 9
>3da5_A Argonaute; PAZ domain, RNA binding, SH3-like barrel, RNA binding protein; 1.94A {Thermococcus thioreducens}
Probab=39.57 E-value=34 Score=21.66 Aligned_cols=41 Identities=17% Similarity=0.066 Sum_probs=33.5
Q ss_pred ChHHHHHHHHHHhccccccccc---cceEEEEEecCCCccEEee
Q 033681 12 DGDYQHNKIMEMLVVKFLHQTL---TDVIIPTFDIRLLQPISFS 52 (113)
Q Consensus 12 ~~~~l~~~L~~~~g~~~l~d~~---~~v~i~a~di~~~~~~~f~ 52 (113)
+.+.|+++|++.=|+..|+|.. +-|.-|++.--+++|.++.
T Consensus 18 ~~~~l~~fl~~h~~~~~l~dias~~k~vykp~f~~y~~~p~li~ 61 (128)
T 3da5_A 18 NKDALRDFLKEHRGTILLRDIASEHKVVYKPIFKRYNGDPDLIE 61 (128)
T ss_dssp CHHHHHHHHHHTTTTEEEEETTSSSCCEEEECBCTTCSSBCEEC
T ss_pred CHHHHHHHHHHhhcceeHHhhcchhhhHHhHHHHHhcCCCCccc
Confidence 6789999999999999998875 3456788888888887754
No 10
>1eer_A Erythropoietin; signal transduction, hematopoietic cytokine, cytokine receptor class 1, complex (cytokine/receptor); 1.90A {Homo sapiens} SCOP: a.26.1.2 PDB: 1buy_A 1cn4_C
Probab=23.26 E-value=42 Score=22.80 Aligned_cols=37 Identities=14% Similarity=0.200 Sum_probs=26.5
Q ss_pred ccCCChHHHHHHHHHHhc-ccccccc------ccceEEEEEecC
Q 033681 8 LSQCDGDYQHNKIMEMLV-VKFLHQT------LTDVIIPTFDIR 44 (113)
Q Consensus 8 ~~~y~~~~l~~~L~~~~g-~~~l~d~------~~~v~i~a~di~ 44 (113)
+|.+|..-|+++|+|--. +..|... ..+|.+|.++++
T Consensus 4 rpiCD~RvL~~~I~EA~eae~~~~~C~e~c~ls~~v~vP~t~vn 47 (166)
T 1eer_A 4 RLICDSRVLERYLLEAKEAEKITTGCAEHCSLNEKITVPDTKVN 47 (166)
T ss_dssp SGGGSHHHHHHHHHHHHHHHHHGGGCTTSCEEEEEEEECCCCBC
T ss_pred CCccCHHHHHHHHHHHHHHHHHHhhCcccCCCCCceecCceeee
Confidence 578899999999998764 3444433 357888888764
No 11
>1v7m_V Thrombopoietin; FAB fragment, complex (cytokine/antibody), immune system/cytokine complex; 2.51A {Homo sapiens} SCOP: a.26.1.2 PDB: 1v7n_V
Probab=22.75 E-value=44 Score=22.68 Aligned_cols=37 Identities=24% Similarity=0.285 Sum_probs=24.4
Q ss_pred ccCCChHHHHHHHHHHhc-cccccc------cccceEEEEEecC
Q 033681 8 LSQCDGDYQHNKIMEMLV-VKFLHQ------TLTDVIIPTFDIR 44 (113)
Q Consensus 8 ~~~y~~~~l~~~L~~~~g-~~~l~d------~~~~v~i~a~di~ 44 (113)
+|.+|..-|+++|+|--. +..|.. +..+|.+|.++++
T Consensus 4 ~piCD~RvL~~~I~EA~dae~~~~~C~~~c~Ls~~V~vP~t~vn 47 (163)
T 1v7m_V 4 PPACDLRVLSKLLRDSHVLHSRLSQCPEVHPLPTPVLLPAVDFS 47 (163)
T ss_dssp ---CCSCHHHHHHHHHHHHHHGGGSSSSCCCCSSCEEEECCCCC
T ss_pred CcccCHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceecCceeee
Confidence 577888888888887654 334433 2478999999875
Done!