BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033683
(113 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IR3|A Chain A, Crystal Structure Of Human 3-Hydroxyacyl-Thioester
Dehydratase 2 (Htd2)
pdb|3IR3|B Chain B, Crystal Structure Of Human 3-Hydroxyacyl-Thioester
Dehydratase 2 (Htd2)
Length = 148
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Query: 14 LRYFSSLEPRILKTGDILRQTRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVH 73
L++F + +K GD R F+ DV +S+++ D NPLH N + A++ F + +VH
Sbjct: 8 LQHFQHMH---IKVGDRAELRRAFTQTDVATFSELTGDVNPLHLNEDFAKHTKFGNTIVH 64
Query: 74 GMLV 77
G+L+
Sbjct: 65 GVLI 68
>pdb|2B3M|A Chain A, Crystal Structure Of Protein Af1124 From Archaeoglobus
Fulgidus
pdb|3K67|A Chain A, Crystal Structure Of Protein Af1124 From Archaeoglobus
Fulgidus
pdb|3K67|B Chain B, Crystal Structure Of Protein Af1124 From Archaeoglobus
Fulgidus
Length = 159
Score = 42.7 bits (99), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 3 INNLLSTKPPLLRYFSSLEPRILKTGDILRQTRIFSSEDVVEYSKVSHDSNPLHFNSESA 62
+ + S K ++ F E LK G + DV + +S D NP+HF+ + A
Sbjct: 15 MKGIYSKKGGKVKPFEKFEGE-LKEGYRFEYEKKLCEIDVAMFGLISGDLNPVHFDEDFA 73
Query: 63 RNAGFDDRLVHGMLVASMFPQII 85
F R+VHGML S+ +
Sbjct: 74 SKTRFGGRVVHGMLTTSLVSAAV 96
>pdb|1IQ6|A Chain A, (R)-Hydratase From A. Caviae Involved In Pha
Biosynthesis
pdb|1IQ6|B Chain B, (R)-Hydratase From A. Caviae Involved In Pha
Biosynthesis
Length = 134
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 34/57 (59%)
Query: 25 LKTGDILRQTRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMF 81
L+ G R ++ F + +V ++ +S D NPLH + A F+ +VHGML+AS+F
Sbjct: 6 LEVGQKARLSKRFGAAEVAAFAALSEDFNPLHLDPAFAATTAFERPIVHGMLLASLF 62
>pdb|3OML|A Chain A, Structure Of Full-Length Peroxisomal Multifunctional
Enzyme Type 2 From Drosophila Melanogaster
Length = 613
Score = 35.0 bits (79), Expect = 0.009, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 38 SSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGM 75
+SED ++S D NPLH + + A AGF ++HG+
Sbjct: 490 TSEDQAALYRLSGDKNPLHIDPQMALLAGFKTPILHGL 527
>pdb|3ZEN|D Chain D, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|3ZEN|E Chain E, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|3ZEN|F Chain F, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|A Chain A, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|B Chain B, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|C Chain C, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
Length = 3089
Score = 33.5 bits (75), Expect = 0.032, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 27/45 (60%)
Query: 41 DVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQII 85
D+ ++ VS D NP+H + +A AG + +VHGM +++ ++
Sbjct: 1235 DMRPFAVVSGDHNPIHTDRAAALLAGLEGPIVHGMWLSAAAQHVV 1279
>pdb|1PN2|A Chain A, Crystal Structure Analysis Of The Selenomethionine
Labelled 2-Enoyl-Coa Hydratase 2 Domain Of Candida
Tropicalis Multifunctional Enzyme Type 2
pdb|1PN2|B Chain B, Crystal Structure Analysis Of The Selenomethionine
Labelled 2-Enoyl-Coa Hydratase 2 Domain Of Candida
Tropicalis Multifunctional Enzyme Type 2
pdb|1PN2|C Chain C, Crystal Structure Analysis Of The Selenomethionine
Labelled 2-Enoyl-Coa Hydratase 2 Domain Of Candida
Tropicalis Multifunctional Enzyme Type 2
pdb|1PN2|D Chain D, Crystal Structure Analysis Of The Selenomethionine
Labelled 2-Enoyl-Coa Hydratase 2 Domain Of Candida
Tropicalis Multifunctional Enzyme Type 2
Length = 280
Score = 32.0 bits (71), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 24/48 (50%)
Query: 33 QTRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASM 80
Q + SED+ ++S D NPLH + A+ A F ++HG +
Sbjct: 164 QVDVPVSEDLAALYRLSGDRNPLHIDPNFAKGAKFPKPILHGXCTYGL 211
>pdb|1PN4|A Chain A, Crystal Structure Of 2-Enoyl-Coa Hydratase 2 Domain Of
Candida Tropicalis Multifunctional Enzyme Type 2
Complexed With (3r)-Hydroxydecanoyl-Coa.
pdb|1PN4|B Chain B, Crystal Structure Of 2-Enoyl-Coa Hydratase 2 Domain Of
Candida Tropicalis Multifunctional Enzyme Type 2
Complexed With (3r)-Hydroxydecanoyl-Coa.
pdb|1PN4|C Chain C, Crystal Structure Of 2-Enoyl-Coa Hydratase 2 Domain Of
Candida Tropicalis Multifunctional Enzyme Type 2
Complexed With (3r)-Hydroxydecanoyl-Coa.
pdb|1PN4|D Chain D, Crystal Structure Of 2-Enoyl-Coa Hydratase 2 Domain Of
Candida Tropicalis Multifunctional Enzyme Type 2
Complexed With (3r)-Hydroxydecanoyl-Coa
Length = 280
Score = 32.0 bits (71), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 24/48 (50%)
Query: 33 QTRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASM 80
Q + SED+ ++S D NPL + A+ A F ++HGM +
Sbjct: 164 QVDVPVSEDLAALYRLSGDRNPLQIDPNFAKGAKFPKPILHGMCTYGL 211
>pdb|2CDH|S Chain S, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|T Chain T, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|U Chain U, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|V Chain V, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|W Chain W, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|X Chain X, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution
Length = 248
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 47 KVSHDSNPLHFNSESARNAGFDDRLVHGMLV 77
++S D NPLH + A AGFD ++HG+
Sbjct: 148 RLSGDWNPLHIDPNFASLAGFDKPILHGLCT 178
>pdb|1S9C|A Chain A, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|B Chain B, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|C Chain C, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|D Chain D, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|E Chain E, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|F Chain F, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|G Chain G, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|H Chain H, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|I Chain I, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|J Chain J, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|K Chain K, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|L Chain L, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
Length = 298
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 47 KVSHDSNPLHFNSESARNAGFDDRLVHGMLV 77
++S D NPLH + A AGFD ++HG+
Sbjct: 189 RLSGDWNPLHIDPNFASLAGFDKPILHGLCT 219
>pdb|3KH8|A Chain A, Crystal Structure Of Maoc-Like Dehydratase From
Phytophthora Capsici
pdb|3KH8|B Chain B, Crystal Structure Of Maoc-Like Dehydratase From
Phytophthora Capsici
Length = 332
Score = 28.5 bits (62), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 47 KVSHDSNPLHFNSESARNAGFDDRLVHGML 76
++S D N LH + E A++ GF ++HG+
Sbjct: 224 RLSGDYNSLHIDPEIAKSVGFKQPILHGLC 253
>pdb|2VKZ|G Chain G, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|H Chain H, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|I Chain I, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|3HMJ|G Chain G, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|H Chain H, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|I Chain I, Saccharomyces Cerevisiae Fas Type I
pdb|2UV8|G Chain G, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|H Chain H, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|I Chain I, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
Length = 2051
Score = 28.5 bits (62), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 45 YSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVAS 79
Y++VS D NP+H + A A + HGM ++
Sbjct: 1553 YARVSGDLNPIHVSRHFASYANLPGTITHGMFSSA 1587
>pdb|2BEI|A Chain A, X-Ray Structure Of Thialysine N-Acetyltransferase
(Ssat2) From Homo Sapiens
pdb|2BEI|B Chain B, X-Ray Structure Of Thialysine N-Acetyltransferase
(Ssat2) From Homo Sapiens
pdb|2Q4V|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Thialysine N- Acetyltransferase (Ssat2) From Homo
Sapiens
pdb|2Q4V|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Thialysine N- Acetyltransferase (Ssat2) From Homo
Sapiens
Length = 170
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 8/62 (12%)
Query: 21 EPRILKTGDILRQTRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASM 80
E + GDILR R ++ E+ K+S + + + E+ R GF D + LVA +
Sbjct: 8 EAKEGDCGDILRLIR-----ELAEFEKLS---DQVKISEEALRADGFGDNPFYHCLVAEI 59
Query: 81 FP 82
P
Sbjct: 60 LP 61
>pdb|2UVA|G Chain G, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVA|H Chain H, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVA|I Chain I, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVA|J Chain J, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVA|K Chain K, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVA|L Chain L, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVC|G Chain G, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVC|H Chain H, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVC|I Chain I, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVC|J Chain J, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVC|K Chain K, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVC|L Chain L, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
Length = 2060
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 11/41 (26%), Positives = 21/41 (51%)
Query: 45 YSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQII 85
Y++VS D NP+H + + A + HGM ++ ++
Sbjct: 1562 YARVSGDYNPIHVSRVFSSYANLPGTITHGMYTSAAVRSLV 1602
>pdb|1DT6|A Chain A, Structure Of Mammalian Cytochrome P450 2c5
pdb|1N6B|A Chain A, Microsomal Cytochrome P450 2c5/3lvdh Complex With A
Dimethyl Derivative Of Sulfaphenazole
pdb|1NR6|A Chain A, Microsomal Cytochrome P450 2c53LVDH COMPLEX WITH
DICLOFENAC
Length = 473
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 11 PPLLRYFSSLEPRILKTGDILRQTRIFSSEDVVEYSKVSHDSNPLHF 57
P LL YF + +LK D ++ F E V E+ K+ +NP F
Sbjct: 202 PALLDYFPGIHKTLLKNADYIKN---FIMEKVKEHQKLLDVNNPRDF 245
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.139 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,436,119
Number of Sequences: 62578
Number of extensions: 71231
Number of successful extensions: 227
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 214
Number of HSP's gapped (non-prelim): 16
length of query: 113
length of database: 14,973,337
effective HSP length: 77
effective length of query: 36
effective length of database: 10,154,831
effective search space: 365573916
effective search space used: 365573916
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)