Query 033683
Match_columns 113
No_of_seqs 127 out of 1046
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 05:06:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033683.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033683hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK13693 (3R)-hydroxyacyl-ACP 99.9 2.7E-26 5.9E-31 158.9 8.6 88 20-107 4-94 (142)
2 cd03452 MaoC_C MaoC_C The C-t 99.9 3.2E-25 6.9E-30 153.0 8.7 89 21-109 1-94 (142)
3 cd03453 SAV4209_like SAV4209_l 99.9 2.2E-23 4.7E-28 141.0 8.3 82 27-108 1-85 (127)
4 cd03446 MaoC_like MoaC_like 99.9 4.9E-23 1.1E-27 140.3 8.0 90 21-110 1-97 (140)
5 PF01575 MaoC_dehydratas: MaoC 99.9 3.1E-23 6.7E-28 139.5 6.3 83 26-108 5-93 (122)
6 cd03451 FkbR2 FkbR2 is a Strep 99.9 7.5E-23 1.6E-27 140.3 7.7 90 20-109 2-97 (146)
7 cd03449 R_hydratase (R)-hydrat 99.9 3.2E-22 6.9E-27 133.6 9.8 84 25-108 1-87 (128)
8 COG2030 MaoC Acyl dehydratase 99.9 1.6E-22 3.4E-27 142.3 7.9 90 19-108 14-111 (159)
9 PRK08190 bifunctional enoyl-Co 99.9 2.9E-22 6.2E-27 161.1 9.9 93 17-109 6-101 (466)
10 cd03455 SAV4209 SAV4209 is a S 99.9 4E-22 8.8E-27 134.0 7.6 82 28-109 1-85 (123)
11 cd03454 YdeM YdeM is a Bacillu 99.9 3.8E-21 8.3E-26 131.4 8.8 87 22-109 1-94 (140)
12 cd03447 FAS_MaoC FAS_MaoC, the 99.9 3E-21 6.6E-26 131.2 8.1 75 34-108 7-85 (126)
13 cd03450 NodN NodN (nodulation 99.8 6.1E-21 1.3E-25 133.2 8.2 84 26-109 11-103 (149)
14 TIGR02278 PaaN-DH phenylacetic 99.8 1.7E-20 3.7E-25 156.2 7.9 98 12-109 515-617 (663)
15 PRK11563 bifunctional aldehyde 99.8 5.6E-20 1.2E-24 153.3 7.9 91 19-109 534-629 (675)
16 KOG1206 Peroxisomal multifunct 99.8 2.6E-19 5.7E-24 132.1 6.5 79 34-112 156-235 (272)
17 cd03441 R_hydratase_like (R)-h 99.8 1E-18 2.2E-23 116.1 8.0 75 34-108 7-85 (127)
18 PLN02864 enoyl-CoA hydratase 99.8 1.2E-18 2.7E-23 134.0 7.5 89 22-110 178-272 (310)
19 cd03448 HDE_HSD HDE_HSD The R 99.8 1.6E-18 3.4E-23 117.4 6.9 74 34-108 10-87 (122)
20 PRK13691 (3R)-hydroxyacyl-ACP 99.7 2.4E-17 5.2E-22 116.9 7.4 84 25-109 6-102 (166)
21 PRK13692 (3R)-hydroxyacyl-ACP 99.7 3.1E-17 6.8E-22 115.6 7.1 86 22-109 3-102 (159)
22 PF13452 MaoC_dehydrat_N: N-te 99.1 3.5E-11 7.5E-16 81.2 2.4 83 26-108 2-92 (132)
23 COG3777 Uncharacterized conser 98.5 4.6E-08 9.9E-13 73.2 1.5 75 35-109 166-241 (273)
24 PLN02864 enoyl-CoA hydratase 96.9 0.00072 1.6E-08 52.3 2.9 82 26-107 13-110 (310)
25 PF12119 DUF3581: Protein of u 95.2 0.082 1.8E-06 39.1 6.2 62 34-107 13-75 (218)
26 PRK04424 fatty acid biosynthes 95.0 0.044 9.6E-07 39.3 4.3 64 24-110 79-145 (185)
27 PRK00006 fabZ (3R)-hydroxymyri 93.3 0.13 2.8E-06 34.9 3.8 49 61-109 49-107 (147)
28 cd01288 FabZ FabZ is a 17kD be 93.0 0.16 3.5E-06 33.3 3.8 53 58-110 31-94 (131)
29 PRK13188 bifunctional UDP-3-O- 89.8 0.7 1.5E-05 38.0 4.9 57 54-110 355-422 (464)
30 TIGR02286 PaaD phenylacetic ac 80.0 3.4 7.4E-05 26.7 3.8 40 69-108 30-74 (114)
31 COG1607 Acyl-CoA hydrolase [Li 69.3 7.2 0.00016 27.6 3.4 40 71-110 30-76 (157)
32 cd03440 hot_dog The hotdog fol 67.1 7.7 0.00017 21.7 2.8 42 68-109 14-63 (100)
33 PHA00098 hypothetical protein 60.4 9.4 0.0002 25.2 2.4 40 26-65 14-64 (112)
34 cd00493 FabA_FabZ FabA/Z, beta 58.7 14 0.00031 23.7 3.2 41 68-108 40-93 (131)
35 PF03061 4HBT: Thioesterase su 51.7 19 0.00041 20.7 2.7 37 71-107 3-47 (79)
36 TIGR01750 fabZ beta-hydroxyacy 50.4 32 0.00068 22.8 3.9 43 68-110 49-104 (140)
37 PRK00299 sulfur transfer prote 47.4 9.3 0.0002 23.6 0.8 41 5-50 16-60 (81)
38 cd03443 PaaI_thioesterase PaaI 46.5 41 0.00089 20.7 3.8 38 70-107 29-74 (113)
39 COG2050 PaaI HGG motif-contain 46.3 32 0.0007 23.0 3.4 41 68-108 49-97 (141)
40 COG5496 Predicted thioesterase 46.2 68 0.0015 22.0 4.9 66 26-108 2-75 (130)
41 PRK10694 acyl-CoA esterase; Pr 45.3 28 0.0006 23.5 3.0 40 71-110 28-74 (133)
42 COG0764 FabA 3-hydroxymyristoy 44.9 28 0.00061 24.2 3.0 43 68-110 54-106 (147)
43 PF14765 PS-DH: Polyketide syn 43.8 40 0.00087 24.7 3.9 40 67-106 36-76 (295)
44 cd03422 YedF YedF is a bacteri 40.9 15 0.00033 21.8 1.0 41 5-50 6-50 (69)
45 cd03420 SirA_RHOD_Pry_redox Si 38.9 30 0.00065 20.5 2.1 41 5-50 6-50 (69)
46 cd03423 SirA SirA (also known 38.4 16 0.00035 21.6 0.8 41 5-50 6-50 (69)
47 PF06950 DUF1293: Protein of u 37.1 30 0.00066 23.1 2.0 39 27-65 18-67 (115)
48 COG0425 SirA Predicted redox p 32.9 38 0.00083 20.8 1.9 42 5-51 12-57 (78)
49 TIGR01749 fabA beta-hydroxyacy 31.1 80 0.0017 22.3 3.6 42 67-108 70-119 (169)
50 PLN02647 acyl-CoA thioesterase 30.2 51 0.0011 27.0 2.7 15 97-111 340-354 (437)
51 PF10017 Methyltransf_33: Hist 29.2 73 0.0016 21.2 3.0 27 24-50 81-109 (127)
52 PF07977 FabA: FabA-like domai 28.2 51 0.0011 21.8 2.1 12 97-108 90-101 (138)
53 TIGR00369 unchar_dom_1 unchara 27.4 1.3E+02 0.0027 19.1 3.8 38 70-107 33-78 (117)
54 PF13622 4HBT_3: Thioesterase- 23.3 1.3E+02 0.0029 21.6 3.7 39 69-107 9-50 (255)
55 PF01206 TusA: Sulfurtransfera 22.2 42 0.00091 19.5 0.7 28 24-51 23-52 (70)
56 cd03445 Thioesterase_II_repeat 20.6 2.3E+02 0.0049 17.6 4.5 39 68-106 14-54 (94)
57 cd00556 Thioesterase_II Thioes 20.6 79 0.0017 19.0 1.7 42 69-110 14-63 (99)
58 smart00279 HhH2 Helix-hairpin- 20.2 76 0.0017 16.6 1.4 15 40-54 2-16 (36)
59 KOG2763 Acyl-CoA thioesterase 20.1 38 0.00082 27.1 0.2 15 97-111 249-263 (357)
No 1
>PRK13693 (3R)-hydroxyacyl-ACP dehydratase subunit HadB; Provisional
Probab=99.93 E-value=2.7e-26 Score=158.93 Aligned_cols=88 Identities=30% Similarity=0.429 Sum_probs=79.8
Q ss_pred CCCccCCCCcEEee-eEeeCHHHHHHHHhhcCCCCCCCCCHHHHHhcCCCCceeChHHHHHHHHHHhhhhcCCC--ceeE
Q 033683 20 LEPRILKTGDILRQ-TRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQIISSHFVSP--TVSF 96 (113)
Q Consensus 20 ~~~ed~~VG~~~~~-~~tit~~di~~fa~~sgD~nPiH~D~~~Ak~~g~~~~iv~G~l~~al~~~~l~~~lpg~--~~~~ 96 (113)
++|||++|||+++. ++++|++|+.+|+.+|||+||+|+|++||+++||+++|+||+++++++.+++.++.+++ ...+
T Consensus 4 ~~~ed~~vG~~~~~~~~tvt~~di~~FA~~sgD~nPiH~D~~~A~~~g~~~~iahG~~~~a~~~~~~~~~~~~~~~~~~~ 83 (142)
T PRK13693 4 REFSSVKVGDQLPEKTYPLTRQDLVNYAGVSGDLNPIHWDDEIAKVVGLDTAIAHGMLTMGLGGGYVTSWVGDPGAVTEY 83 (142)
T ss_pred ccHhHcCCCCCcCccceeeCHHHHHHHHHHhCCCCccccCHHHHHhcCCCCcEecHHHHHHHHHHHHHHhcCCCcceEEE
Confidence 34666999999975 79999999999999999999999999999999999999999999999999998887654 3567
Q ss_pred EEEecccchhH
Q 033683 97 SFFSSFPCVVL 107 (113)
Q Consensus 97 ~~rF~~PV~v~ 107 (113)
++||++||++|
T Consensus 84 ~~rF~~pv~~g 94 (142)
T PRK13693 84 NVRFTAVVPVP 94 (142)
T ss_pred EEEecccEECC
Confidence 99999999985
No 2
>cd03452 MaoC_C MaoC_C The C-terminal hot dog fold of the MaoC (monoamine oxidase C) dehydratase regulatory protein. Orthologs of MaoC include PaaZ [Escherichia coli] and PaaN [Pseudomonas putida], which are putative ring-opening enzymes involved in phenylacetic acid degradation. The C-terminal domain of MaoC has sequence similarity to (R)-specific enoyl-CoA hydratase,Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. MaoC also has an N-terminal PutA domain like that found in the E. coli PutA proline dehydrogenase and other members of the aldehyde dehydrogenase family.
Probab=99.92 E-value=3.2e-25 Score=152.96 Aligned_cols=89 Identities=20% Similarity=0.266 Sum_probs=79.3
Q ss_pred CCccCCCCcEEee-eEeeCHHHHHHHHhhcCCCCCCCCCHHHHHhcCCCCceeChHHHHHHHHHHhhhhcCCCc-eeE--
Q 033683 21 EPRILKTGDILRQ-TRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQIISSHFVSPT-VSF-- 96 (113)
Q Consensus 21 ~~ed~~VG~~~~~-~~tit~~di~~fa~~sgD~nPiH~D~~~Ak~~g~~~~iv~G~l~~al~~~~l~~~lpg~~-~~~-- 96 (113)
+|||++|||+++. ++++|++|+..|+.++||+||+|+|++||++++|+++||||+++++++.+++.++.++.. ..+
T Consensus 1 ~~ed~~vG~~~~~~~~tvt~~~i~~Fa~~tgD~nPiH~D~e~A~~~~fg~~ia~G~l~~s~~~~l~~~~~~~~~~~~~g~ 80 (142)
T cd03452 1 NLEQLRPGDSLLTHRRTVTEADIVNFACLTGDHFYAHMDEIAAKASFFGKRVAHGYFVLSAAAGLFVDPAPGPVLANYGL 80 (142)
T ss_pred CccccCCCCEEeeCCEEEcHHHHHHHHHhhCCCCccccCHHHHhhCCCCCeeecHHHHHHHHhhhCccCCcccEEEEecc
Confidence 4788999999975 899999999999999999999999999999999999999999999999998876666543 222
Q ss_pred -EEEecccchhHHH
Q 033683 97 -SFFSSFPCVVLWL 109 (113)
Q Consensus 97 -~~rF~~PV~v~~~ 109 (113)
++||++||++|--
T Consensus 81 ~~~rf~~PV~~GDt 94 (142)
T cd03452 81 ENLRFLEPVYPGDT 94 (142)
T ss_pred ceEEECCCCCCCCE
Confidence 7999999999853
No 3
>cd03453 SAV4209_like SAV4209_like. Similar in sequence to the Streptomyces avermitilis SAV4209 protein, with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=99.89 E-value=2.2e-23 Score=140.98 Aligned_cols=82 Identities=29% Similarity=0.456 Sum_probs=75.6
Q ss_pred CCcEEee-eEeeCHHHHHHHHhhcCCCCCCCCCHHHHHhcCCCCceeChHHHHHHHHHHhhhhcCC--CceeEEEEeccc
Q 033683 27 TGDILRQ-TRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQIISSHFVS--PTVSFSFFSSFP 103 (113)
Q Consensus 27 VG~~~~~-~~tit~~di~~fa~~sgD~nPiH~D~~~Ak~~g~~~~iv~G~l~~al~~~~l~~~lpg--~~~~~~~rF~~P 103 (113)
|||++++ ++++|++|+.+|++++||+||+|+|++||+++||+++++||+++.+++.+++.+++++ ...++++||++|
T Consensus 1 vG~~~~~~~~~vt~~~i~~fa~~sgD~npiH~D~~~A~~~g~~~~i~~G~~~~~~~~~~~~~~~~~~~~i~~~~~rf~~P 80 (127)
T cd03453 1 VGDELPPLTPPVSRADLVRYAGASGDFNPIHYDEDFAKKVGLPGVIAHGMLTMGLLGRLVTDWVGDPGRVVSFGVRFTKP 80 (127)
T ss_pred CCccCCceeeecCHHHHHHHHHhhcCCCccccCHHHHHHcCCCCcEecHHHHHHHHHHHHHHHcCCccceEEEEEEECCc
Confidence 7999987 7999999999999999999999999999999999999999999999999999988753 346778999999
Q ss_pred chhHH
Q 033683 104 CVVLW 108 (113)
Q Consensus 104 V~v~~ 108 (113)
|++|-
T Consensus 81 v~~Gd 85 (127)
T cd03453 81 VPVPD 85 (127)
T ss_pred CcCCC
Confidence 99984
No 4
>cd03446 MaoC_like MoaC_like Similar to the MaoC (monoamine oxidase C) dehydratase regulatory protein but without the N-terminal PutA domain. This protein family has a hot-dog fold similar to that of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=99.89 E-value=4.9e-23 Score=140.32 Aligned_cols=90 Identities=22% Similarity=0.348 Sum_probs=77.0
Q ss_pred CCccCCCCcEEee-eEeeCHHHHHHHHhhcCCCCCCCCCHHHHHhcCCCCceeChHHHHHHHHHHhhhhcC--CCc-eeE
Q 033683 21 EPRILKTGDILRQ-TRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQIISSHFV--SPT-VSF 96 (113)
Q Consensus 21 ~~ed~~VG~~~~~-~~tit~~di~~fa~~sgD~nPiH~D~~~Ak~~g~~~~iv~G~l~~al~~~~l~~~lp--g~~-~~~ 96 (113)
+|||++|||+++. ++++|++++..|+.++||+||+|+|++||++++|+++++||+++++++.+++..... +.. ..+
T Consensus 1 ~~ed~~vG~~~~~~~~tvt~~~i~~fa~~~gD~np~H~D~~~A~~~~~~~~ia~G~~~~a~~~~~~~~~~~~~~~~~~~~ 80 (140)
T cd03446 1 YFEDFEIGQVFESVGRTVTEADVVMFAGLSGDWNPIHTDAEYAKKTRFGERIAHGLLTLSIATGLLQRLGVFERTVVAFY 80 (140)
T ss_pred CcccccCCCEeccCCEEECHHHHHHHHHhhCCCcccccCHHHHccCCCCCceeccccHHHHHhhHhhhcccccceeeEEe
Confidence 4788999999975 799999999999999999999999999999999999999999999999988765322 111 122
Q ss_pred ---EEEecccchhHHHh
Q 033683 97 ---SFFSSFPCVVLWLL 110 (113)
Q Consensus 97 ---~~rF~~PV~v~~~~ 110 (113)
++||.+||++|--|
T Consensus 81 g~~~~~f~~pv~~GD~l 97 (140)
T cd03446 81 GIDNLRFLNPVFIGDTI 97 (140)
T ss_pred ccceEEEcCCCCCCCEE
Confidence 79999999998643
No 5
>PF01575 MaoC_dehydratas: MaoC like domain; InterPro: IPR002539 The C terminus of the MaoC protein is found to share similarity with a wide variety of enzymes. All these enzymes contain multiple domains. This domain is found in parts of two enzymes that have been assigned dehydratase activities. A deletion mutant of the C-terminal 271 amino acids in Q02207 from SWISSPROT abolished its 2-enoyl-CoA hydratase activity, suggesting that this region may be a hydratase enzyme []. The maoC gene is part of a operon with maoA which is involved in the synthesis of monoamine oxidase [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3HMJ_H 2UV8_I 2VKZ_G 1PN4_C 1PN2_B 1S9C_K 3OML_A 1Q6W_B 2B3M_A 3K67_B ....
Probab=99.88 E-value=3.1e-23 Score=139.46 Aligned_cols=83 Identities=25% Similarity=0.429 Sum_probs=69.0
Q ss_pred CCCcEEee--eEeeCHHHHHHHHhhcCCCCCCCCCHHHHHhcCCCCceeChHHHHHHHHHHhhhhcCCC----ceeEEEE
Q 033683 26 KTGDILRQ--TRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQIISSHFVSP----TVSFSFF 99 (113)
Q Consensus 26 ~VG~~~~~--~~tit~~di~~fa~~sgD~nPiH~D~~~Ak~~g~~~~iv~G~l~~al~~~~l~~~lpg~----~~~~~~r 99 (113)
.+|+...+ ++++|++++.+|+.+|||+||||+|++||+++||+++||||+++++++.+++.+++++. ...+++|
T Consensus 5 ~~g~~~~~~~~~tit~~~~~~fa~~sgD~nPiH~D~~~A~~~gf~~~ivhG~~~~a~~~~~~~~~~~~~~~~~~~~~~~r 84 (122)
T PF01575_consen 5 RIGQGIRHSRSRTITEADIRQFAALSGDFNPIHVDPEYARATGFGGPIVHGMLTLALASGLLGDWLGPNPPARLGRFNVR 84 (122)
T ss_dssp CTTSEEEEEEEEEEEHHHHHHHHHHHT---HHHH-HHHHHTSTTSSSB-BHHHHHHHHHHHHHHHHSTTECEEEEEEEEE
T ss_pred CCCCccccccCEEECHHHHHHHHHhhCCCCcceecHHHHhhcCCCCEEEccHHHHHHHHHHHHHhccCccceEEEEEEEE
Confidence 48998886 79999999999999999999999999999999999999999999999999999988763 3456899
Q ss_pred ecccchhHH
Q 033683 100 SSFPCVVLW 108 (113)
Q Consensus 100 F~~PV~v~~ 108 (113)
|.+||++|-
T Consensus 85 F~~PV~~gd 93 (122)
T PF01575_consen 85 FRAPVFPGD 93 (122)
T ss_dssp ESS--BTTE
T ss_pred EeccccCCC
Confidence 999999985
No 6
>cd03451 FkbR2 FkbR2 is a Streptomyces hygroscopicus protein with a hot dog fold that belongs to a conserved family of proteins found in prokaryotes and archaea but not in eukaryotes. FkbR2 has sequence similarity to (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The function of FkbR2 is unknown.
Probab=99.88 E-value=7.5e-23 Score=140.30 Aligned_cols=90 Identities=18% Similarity=0.222 Sum_probs=78.2
Q ss_pred CCCccCCCCcEEee--eEeeCHHHHHHHHhhcCCCCCCCCCHHHHHhcCCCCceeChHHHHHHHHHHhhhhcCC-Cce--
Q 033683 20 LEPRILKTGDILRQ--TRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQIISSHFVS-PTV-- 94 (113)
Q Consensus 20 ~~~ed~~VG~~~~~--~~tit~~di~~fa~~sgD~nPiH~D~~~Ak~~g~~~~iv~G~l~~al~~~~l~~~lpg-~~~-- 94 (113)
+.|||++||+++++ .+++|++++..|+.++||+||+|+|++||++++++++++||+++.+++.++..++.++ .+.
T Consensus 2 ~~~~~~~vG~~~~~~~~~tvt~~~i~~fa~~~gd~~piH~D~~~a~~~~~~~~ia~G~l~~~~~~~~~~~~~~~~~~~~~ 81 (146)
T cd03451 2 LYFEDFTVGQVFEHAPGRTVTEADNVLFTLLTMNTAPLHFDAAYAAKTEFGRRLVNSLFTLSLALGLSVNDTSLTAVANL 81 (146)
T ss_pred CccccCCCccEEecCCCeEEcHHHHHHHHHhhCCCCccccCHHHHhhCCCCCccccHHhHHHHHhhheehhccccceecc
Confidence 46888999999985 6899999999999999999999999999999999999999999999998876665543 222
Q ss_pred e-EEEEecccchhHHH
Q 033683 95 S-FSFFSSFPCVVLWL 109 (113)
Q Consensus 95 ~-~~~rF~~PV~v~~~ 109 (113)
. .+++|++||++|--
T Consensus 82 ~~~~~~f~~pv~~GDt 97 (146)
T cd03451 82 GYDEVRFPAPVFHGDT 97 (146)
T ss_pred CccEEEecCCCCCCCE
Confidence 2 27999999999853
No 7
>cd03449 R_hydratase (R)-hydratase [(R)-specific enoyl-CoA hydratase] catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. (R)-hydratase contains a hot-dog fold similar to those of thioesterase II, and beta-hydroxydecanoyl-ACP dehydratase, MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit. The active site lies within a substrate-binding tunnel formed by the (R)-hydratase homodimer. A subset of the bacterial (R)-hydratases contain a C-terminal phosphotransacetylase (PTA) domain.
Probab=99.88 E-value=3.2e-22 Score=133.64 Aligned_cols=84 Identities=33% Similarity=0.496 Sum_probs=76.5
Q ss_pred CCCCcEEeeeEeeCHHHHHHHHhhcCCCCCCCCCHHHHHhcCCCCceeChHHHHHHHHHHhhhhcCCCce---eEEEEec
Q 033683 25 LKTGDILRQTRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQIISSHFVSPTV---SFSFFSS 101 (113)
Q Consensus 25 ~~VG~~~~~~~tit~~di~~fa~~sgD~nPiH~D~~~Ak~~g~~~~iv~G~l~~al~~~~l~~~lpg~~~---~~~~rF~ 101 (113)
++||++++.++++|++++.+|++++||.||+|+|++||+++||+++++||+++.+++.+++..+.++++. ..++||.
T Consensus 1 ~~~G~~~~~~~tv~~~~~~~fa~~~gd~npiH~D~~~A~~~g~~~~i~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~f~ 80 (128)
T cd03449 1 LKVGDSASLTRTITEEDVELFAELSGDFNPIHLDEEYAKKTRFGGRIAHGMLTASLISAVLGTLLPGPGTIYLSQSLRFL 80 (128)
T ss_pred CCCCCEEEEEEEEcHHHHHHHHHHhCCCCCccCCHHHHhhCCCCCceecHHHHHHHHHHHHhccCCCceEEEEEEEEEEC
Confidence 5799999778999999999999999999999999999999999999999999999999998887766543 3589999
Q ss_pred ccchhHH
Q 033683 102 FPCVVLW 108 (113)
Q Consensus 102 ~PV~v~~ 108 (113)
+||++|-
T Consensus 81 ~Pv~~gd 87 (128)
T cd03449 81 RPVFIGD 87 (128)
T ss_pred CCccCCC
Confidence 9999984
No 8
>COG2030 MaoC Acyl dehydratase [Lipid metabolism]
Probab=99.88 E-value=1.6e-22 Score=142.33 Aligned_cols=90 Identities=22% Similarity=0.371 Sum_probs=79.7
Q ss_pred CCCCccCCCCcEEee--eEeeCHHHHHHHHhhcCCCCCCCCCHHHHHh-cCCCCceeChHHHHHHHHHHhhhhcCCC--c
Q 033683 19 SLEPRILKTGDILRQ--TRIFSSEDVVEYSKVSHDSNPLHFNSESARN-AGFDDRLVHGMLVASMFPQIISSHFVSP--T 93 (113)
Q Consensus 19 ~~~~ed~~VG~~~~~--~~tit~~di~~fa~~sgD~nPiH~D~~~Ak~-~g~~~~iv~G~l~~al~~~~l~~~lpg~--~ 93 (113)
...++++++|+.++. .+++|++|+..|+.++||+||||.|+++|++ ++|+++|+||||+.|++.+++.++.+.+ +
T Consensus 14 ~~~~~~~~vG~~~~~~~~~~~t~~d~~~fa~~tgD~qpiH~D~e~A~~~~~fg~~iahG~~t~a~~~~~~~~~~~~~~~~ 93 (159)
T COG2030 14 GLYFEDFEVGQVFPHSPWRTVTEADIVLFAAVTGDPNPIHLDPEAAKKTSGFGGPIAHGMLTLALAMGLVVAALGDPSVG 93 (159)
T ss_pred ccchhhccCCcEEecCCceEecHHHHHHHHHhcCCCCceecCHHHHhccCCCCCEehhHHHHHHHHHHHHHHhccCccee
Confidence 367888999998887 4799999999999999999999999999999 5999999999999999999998876543 3
Q ss_pred ee---EEEEecccchhHH
Q 033683 94 VS---FSFFSSFPCVVLW 108 (113)
Q Consensus 94 ~~---~~~rF~~PV~v~~ 108 (113)
.+ .++||.+||++|-
T Consensus 94 ~~~g~~~vRF~~PV~~Gd 111 (159)
T COG2030 94 ANLGGDEVRFVKPVFPGD 111 (159)
T ss_pred eeccccceEecCCCCCCC
Confidence 34 3799999999984
No 9
>PRK08190 bifunctional enoyl-CoA hydratase/phosphate acetyltransferase; Validated
Probab=99.87 E-value=2.9e-22 Score=161.11 Aligned_cols=93 Identities=19% Similarity=0.316 Sum_probs=84.2
Q ss_pred cCCCCCccCCCCcEEeeeEeeCHHHHHHHHhhcCCCCCCCCCHHHHHhcCCCCceeChHHHHHHHHHHhhhhcCCCce--
Q 033683 17 FSSLEPRILKTGDILRQTRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQIISSHFVSPTV-- 94 (113)
Q Consensus 17 ~~~~~~ed~~VG~~~~~~~tit~~di~~fa~~sgD~nPiH~D~~~Ak~~g~~~~iv~G~l~~al~~~~l~~~lpg~~~-- 94 (113)
.++++|||++|||+++.++++|++++..|+.++||+||+|+|++||+++||+++|+||+++.+++.+++.+++++.+.
T Consensus 6 ~~~~~fedl~vG~~~~~~rtvT~~di~~FA~lsGD~nPiH~D~e~Ak~sgfg~~IahG~l~~s~~~~l~~~~~~g~~~~~ 85 (466)
T PRK08190 6 IENRTFDEIAIGDSASLVRTLTPDDIELFAAMSGDVNPAHLDAAYAASDGFHHVVAHGMWGGALISAVLGTRLPGPGTIY 85 (466)
T ss_pred hcCccHhhcCCCCEEeeeEEecHHHHHHHHHHhCCCCCCCcCHHHHHhCCCCCceeCHHHHHHHHHHHHhhhCCCcceEE
Confidence 456788999999999888999999999999999999999999999999999999999999999999998888876543
Q ss_pred -eEEEEecccchhHHH
Q 033683 95 -SFSFFSSFPCVVLWL 109 (113)
Q Consensus 95 -~~~~rF~~PV~v~~~ 109 (113)
..++||.+||++|--
T Consensus 86 ~~~~~rF~~PV~~GDt 101 (466)
T PRK08190 86 LGQSLRFRRPVRIGDT 101 (466)
T ss_pred EEEEEEEeCCcCCCCE
Confidence 358999999999853
No 10
>cd03455 SAV4209 SAV4209 is a Streptomyces avermitilis protein with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The alpha- and gamma-proteobacterial members of this CD have, in addition to a hot dog fold, an N-terminal extension.
Probab=99.87 E-value=4e-22 Score=133.96 Aligned_cols=82 Identities=22% Similarity=0.265 Sum_probs=74.0
Q ss_pred CcEEee-eEeeCHHHHHHHHhhcCCCCCCCCCHHHHHhcCCCCceeChHHHHHHHHHHhhhhcCC--CceeEEEEecccc
Q 033683 28 GDILRQ-TRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQIISSHFVS--PTVSFSFFSSFPC 104 (113)
Q Consensus 28 G~~~~~-~~tit~~di~~fa~~sgD~nPiH~D~~~Ak~~g~~~~iv~G~l~~al~~~~l~~~lpg--~~~~~~~rF~~PV 104 (113)
|+.++. ++++|++++.+|+.+++|+||+|+|++||+++||+++|+||+++++++.+++.++++. ....+++||.+||
T Consensus 1 g~~~~~~~~~vt~~~i~~fa~~s~D~~piH~D~~~A~~~g~~~~ia~G~~~~~~~~~~~~~~~~~~~~~~~~~~rf~~pv 80 (123)
T cd03455 1 GDELPRLSIPPDPTLLFRYSAATRDFHRIHHDRDYARAVGYPDLYVNGPTLAGLVIRYVTDWAGPDARVKSFAFRLGAPL 80 (123)
T ss_pred CCcCCcEEecCCHHHHHHHHhhcCCCCcccCCHHHHHhcCCCceEEEHHHHHHHHHHHHHHccCCcceEEEEEEEeeccc
Confidence 677876 7899999999999999999999999999999999999999999999999999888753 3456789999999
Q ss_pred hhHHH
Q 033683 105 VVLWL 109 (113)
Q Consensus 105 ~v~~~ 109 (113)
++|--
T Consensus 81 ~~Gdt 85 (123)
T cd03455 81 YAGDT 85 (123)
T ss_pred cCCCE
Confidence 99853
No 11
>cd03454 YdeM YdeM is a Bacillus subtilis protein that belongs to a family of prokaryotic proteins of unkown function. YdeM has sequence similarity to the hot-dog fold of (R)-specific enoyl-CoA hydratase. Other enzymes with this fold include the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=99.85 E-value=3.8e-21 Score=131.38 Aligned_cols=87 Identities=14% Similarity=0.161 Sum_probs=74.9
Q ss_pred CccCCCCcEEee-eEeeCHHHHHHHHhhcCCCCCCCCCHHHHHhcCCCCceeChHHHHHHHHHHhhhhc-CC--Cce--e
Q 033683 22 PRILKTGDILRQ-TRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQIISSHF-VS--PTV--S 95 (113)
Q Consensus 22 ~ed~~VG~~~~~-~~tit~~di~~fa~~sgD~nPiH~D~~~Ak~~g~~~~iv~G~l~~al~~~~l~~~l-pg--~~~--~ 95 (113)
|||++||++++. .+++|++++..|+.+ +|+||+|+|++||++++|+++||||+++++++.++..+.. .. ... .
T Consensus 1 ~ed~~vG~~~~~~~~~vt~~~v~~Fa~~-~D~npih~D~e~A~~~~~~~~ia~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (140)
T cd03454 1 FEDLVIGQRFTSGSYTVTEEEIIAFARE-FDPQPFHLDEEAAKESLFGGLAASGWHTAAITMRLLVDAGLSGSASGGSPG 79 (140)
T ss_pred CCcCCCccEEEeCCEEEcHHHHHHHHHc-cCCCccCcCHHHHhcCCCCCeeechHHHHHHHHHhhhhhccccceEEEEcc
Confidence 688999999998 799999999999997 9999999999999999999999999999999998876432 22 112 2
Q ss_pred -EEEEecccchhHHH
Q 033683 96 -FSFFSSFPCVVLWL 109 (113)
Q Consensus 96 -~~~rF~~PV~v~~~ 109 (113)
.+++|.+||++|--
T Consensus 80 ~~~~~f~~pv~~Gd~ 94 (140)
T cd03454 80 IDELRWPRPVRPGDT 94 (140)
T ss_pred eeeeEeCCCCCCCCE
Confidence 37999999999853
No 12
>cd03447 FAS_MaoC FAS_MaoC, the MaoC-like hot dog fold of the fatty acid synthase, beta subunit. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and 17-beta-hydroxysteriod dehydrogenase (HSD).
Probab=99.85 E-value=3e-21 Score=131.18 Aligned_cols=75 Identities=21% Similarity=0.230 Sum_probs=67.6
Q ss_pred eEeeCHHHHHHHHhhcCCCCCCCCCHHHHHhcCCCCceeChHHHHHHHHHHhhhhcCC-C---ceeEEEEecccchhHH
Q 033683 34 TRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQIISSHFVS-P---TVSFSFFSSFPCVVLW 108 (113)
Q Consensus 34 ~~tit~~di~~fa~~sgD~nPiH~D~~~Ak~~g~~~~iv~G~l~~al~~~~l~~~lpg-~---~~~~~~rF~~PV~v~~ 108 (113)
....|++|+..|+.+|||+||||+|++|||++||+++||||||+++++.+++.+++++ . ...+++||++||++|-
T Consensus 7 ~~~~t~~d~~~fa~lsGD~nPiH~D~~~A~~~g~~~~iahG~l~~~~~~~~~~~~~~~~~~~~~~~~~~rf~~PV~~gd 85 (126)
T cd03447 7 LTITAPASNEPYARVSGDFNPIHVSRVFASYAGLPGTITHGMYTSAAVRALVETWAADNDRSRVRSFTASFVGMVLPND 85 (126)
T ss_pred EEEEChHHHHHHHHHhCCCCccCCCHHHHHHcCCCCCeechhHHHHHHHHHHHHhccCCCcceEEEEEEEEcccCcCCC
Confidence 4678999999999999999999999999999999999999999999999998887652 2 3457899999999985
No 13
>cd03450 NodN NodN (nodulation factor N) contains a single hot dog fold similar to those of the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. Rhizobium and related species form nodules on the roots of their legume hosts, a symbiotic process that requires production of Nod factors, which are signal molecules involved in root hair deformation and meristematic cell division. The nodulation gene products, including NodN, are involved in producing the Nod factors, however the role played by NodN is unclear.
Probab=99.84 E-value=6.1e-21 Score=133.22 Aligned_cols=84 Identities=20% Similarity=0.291 Sum_probs=73.7
Q ss_pred CCCcEEee--eEeeCHHHHHHHHhhcCCCCCCCCCHHHHHhcCCCCceeChHHHHHHHHHHhhhhcC--CCc--eeE---
Q 033683 26 KTGDILRQ--TRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQIISSHFV--SPT--VSF--- 96 (113)
Q Consensus 26 ~VG~~~~~--~~tit~~di~~fa~~sgD~nPiH~D~~~Ak~~g~~~~iv~G~l~~al~~~~l~~~lp--g~~--~~~--- 96 (113)
-||++++. .+++|++|+..|+.++||.||+|.|++|||++||+++||||+++++++.+++.++++ +.. ..+
T Consensus 11 ~vG~~~~~~~~~~vt~~di~~FA~~sgD~nPiH~D~e~A~~~gfg~~Ia~G~~t~sl~~~l~~~~~~~~~~~~~~~~g~~ 90 (149)
T cd03450 11 LVGQELGVSDWVTVDQERIDQFADATGDHQWIHVDPERAAAEPFGGTIAHGFLTLSLLPALTPQLFRVEGVKMGVNYGLD 90 (149)
T ss_pred hCCCCcCCCCCEEECHHHHHHHHHhhCCCCccccCHHHHhhCCCCCeEECHHHHHHHHHHHHHhcccCCCceEEEEeecc
Confidence 48999875 479999999999999999999999999999999999999999999999999888754 332 233
Q ss_pred EEEecccchhHHH
Q 033683 97 SFFSSFPCVVLWL 109 (113)
Q Consensus 97 ~~rF~~PV~v~~~ 109 (113)
++||.+||++|--
T Consensus 91 ~~rF~~PV~~GDt 103 (149)
T cd03450 91 KVRFPAPVPVGSR 103 (149)
T ss_pred EEEeCcceeCCcE
Confidence 6999999999853
No 14
>TIGR02278 PaaN-DH phenylacetic acid degradation protein paaN. This family includes paaN genes from Pseudomonas, Sinorhizobium, Rhodopseudomonas, Escherichia, Deinococcus and Corynebacterium. Another homology family (TIGR02288) includes several other species.
Probab=99.82 E-value=1.7e-20 Score=156.20 Aligned_cols=98 Identities=19% Similarity=0.124 Sum_probs=84.4
Q ss_pred CCccccCCCCCccCCCCcEEee-eEeeCHHHHHHHHhhcCCCCCCCCCHHHHHhcCCCCceeChHHHHHHHHHHhhhhcC
Q 033683 12 PLLRYFSSLEPRILKTGDILRQ-TRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQIISSHFV 90 (113)
Q Consensus 12 ~~~~~~~~~~~ed~~VG~~~~~-~~tit~~di~~fa~~sgD~nPiH~D~~~Ak~~g~~~~iv~G~l~~al~~~~l~~~lp 90 (113)
-+.|-.-+++|||++|||+++. ++++|++|+..|+.+|||+||+|+|++||++++|+++|+||+++++++.+++.++.+
T Consensus 515 ~~~~~~~~~~~ed~~VG~~~~~~~~tvt~~dI~~FA~~sgD~nPiH~D~e~A~~s~fg~~Ia~G~l~~sl~~~l~~~~~~ 594 (663)
T TIGR02278 515 GAEVHPFRKPYEDLEIGDSLTTHRRTVTEADIALFAALSGDHFYAHMDEIAARESFFGKRVAHGYFVLSAAAGLFVDPAP 594 (663)
T ss_pred cCCcCCCCCCHHHcCCCCCcCCCCeEEcHHHHHHHHHhhCCCCcccCCHHHHhhCCCCCceeCHHHHHHHHHHHhhccCc
Confidence 3445434789999999999975 799999999999999999999999999999999999999999999999999876655
Q ss_pred CCc-ee---EEEEecccchhHHH
Q 033683 91 SPT-VS---FSFFSSFPCVVLWL 109 (113)
Q Consensus 91 g~~-~~---~~~rF~~PV~v~~~ 109 (113)
+.. .. .++||.+||++|--
T Consensus 595 ~~~~~~~g~~~~rF~~PV~~GDt 617 (663)
T TIGR02278 595 GPVLANYGLENLRFLEPVGPGDT 617 (663)
T ss_pred cchhhhcccceEEEcCCCCCCCE
Confidence 543 22 37999999999853
No 15
>PRK11563 bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase; Provisional
Probab=99.81 E-value=5.6e-20 Score=153.29 Aligned_cols=91 Identities=21% Similarity=0.189 Sum_probs=80.7
Q ss_pred CCCCccCCCCcEEee-eEeeCHHHHHHHHhhcCCCCCCCCCHHHHHhcCCCCceeChHHHHHHHHHHhhhhcCCCc-ee-
Q 033683 19 SLEPRILKTGDILRQ-TRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQIISSHFVSPT-VS- 95 (113)
Q Consensus 19 ~~~~ed~~VG~~~~~-~~tit~~di~~fa~~sgD~nPiH~D~~~Ak~~g~~~~iv~G~l~~al~~~~l~~~lpg~~-~~- 95 (113)
+++|||++|||+++. ++++|++|+..|+.++||+||+|+|++||++++|+++|+||+++++++.+++.++.++.. ..
T Consensus 534 ~~~fed~~vG~~~~~~~~tvt~~di~~FA~lsgD~nPiH~D~e~A~~~~fg~~ia~G~l~~sl~~~l~~~~~~~~~~~~~ 613 (675)
T PRK11563 534 RKYFEELRIGDSLLTARRTVTEADIVNFACLSGDTFYAHMDEIAAAANFFGGRVAHGYFVLSAAAGLFVDPAPGPVLANY 613 (675)
T ss_pred CCCHHHcCCCCEeccCCEEEcHHHHHHHHHhhCCCCccccCHHHHhhCCCCCceeCHHHHHHHHHHHhhccCccchhhhc
Confidence 578999999999975 799999999999999999999999999999999999999999999999998876655542 22
Q ss_pred --EEEEecccchhHHH
Q 033683 96 --FSFFSSFPCVVLWL 109 (113)
Q Consensus 96 --~~~rF~~PV~v~~~ 109 (113)
.++||.+||++|--
T Consensus 614 g~~~~rF~~PV~~GDt 629 (675)
T PRK11563 614 GLENLRFLTPVKPGDT 629 (675)
T ss_pred ccceEEEcCCCCCCCE
Confidence 27999999999843
No 16
>KOG1206 consensus Peroxisomal multifunctional beta-oxidation protein and related enzymes [Lipid transport and metabolism]
Probab=99.78 E-value=2.6e-19 Score=132.15 Aligned_cols=79 Identities=30% Similarity=0.424 Sum_probs=72.6
Q ss_pred eEeeCHHHHHHHHhhcCCCCCCCCCHHHHHhcCCCCceeChHHHHHHHHHHhhhhcCCCc-eeEEEEecccchhHHHhhh
Q 033683 34 TRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQIISSHFVSPT-VSFSFFSSFPCVVLWLLLI 112 (113)
Q Consensus 34 ~~tit~~di~~fa~~sgD~nPiH~D~~~Ak~~g~~~~iv~G~l~~al~~~~l~~~lpg~~-~~~~~rF~~PV~v~~~~~~ 112 (113)
.+..|.+|+++|+++|||+||+|+|||.|+.+||+.+|+||+|+.++..+.+..+.|+.. ...++||+.||++|.-|+.
T Consensus 156 v~~~ts~DqaAlyrlsgD~NPLHiDPe~A~~agFetpilHGlc~lg~~~riv~a~~~~a~y~~~kvrF~spV~pGdtll~ 235 (272)
T KOG1206|consen 156 VERFTSEDQAALYRLSGDHNPLHIDPESALEAGFETPILHGLCTLGFSARIVGAQFPPAVYKAQKVRFSSPVGPGDTLLV 235 (272)
T ss_pred eeecchhhHHHHHHhcCCCCccccCHHHHHhcCCCCchhhhHHHhhhhHHHHHHhcCchhhheeeeeecCCCCCchhHHH
Confidence 678999999999999999999999999999999999999999999999999998887543 4678999999999987763
No 17
>cd03441 R_hydratase_like (R)-hydratase [(R)-specific enoyl-CoA hydratase]. Catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. The structure of the monomer includes a five-strand antiparallel beta-sheet wrapped around a central alpha helix, referred to as a hot dog fold. The active site lies within a substrate-binding tunnel formed by the homodimer. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit.
Probab=99.78 E-value=1e-18 Score=116.11 Aligned_cols=75 Identities=28% Similarity=0.396 Sum_probs=68.4
Q ss_pred eEeeCHHHHHHHHhhcCCCCCCCCCHHHHHhcCCCCceeChHHHHHHHHHHhhhhcCC-Cc---eeEEEEecccchhHH
Q 033683 34 TRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQIISSHFVS-PT---VSFSFFSSFPCVVLW 108 (113)
Q Consensus 34 ~~tit~~di~~fa~~sgD~nPiH~D~~~Ak~~g~~~~iv~G~l~~al~~~~l~~~lpg-~~---~~~~~rF~~PV~v~~ 108 (113)
.++++++++..|+.++||.||+|+|++||++.|++++++||+++++++.+++.+++++ .. ...++||.+||++|-
T Consensus 7 ~~~~~~~~~~~fa~~~gd~npiH~d~~~A~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~Pv~~Gd 85 (127)
T cd03441 7 GRTVTEADIALFARLSGDPNPIHVDPEYAKAAGFGGRIAHGMLTLSLASGLLVQWLPGTDGANLGSQSVRFLAPVFPGD 85 (127)
T ss_pred ceEcCHHHHHHHHHHhCCCCccccCHHHHHhCCCCCceechHHHHHHHHhhhhhhccCcccceeEEeEEEEeCCcCCCC
Confidence 7899999999999999999999999999999999999999999999999999888764 22 346899999999984
No 18
>PLN02864 enoyl-CoA hydratase
Probab=99.76 E-value=1.2e-18 Score=134.01 Aligned_cols=89 Identities=17% Similarity=0.081 Sum_probs=74.7
Q ss_pred CccCCCCcEEee--eEeeCHHHHHHHHhhcCCCCCCCCCHHHHHhcCCCCceeChHHHHHHHHHHhhhh-cCCC---cee
Q 033683 22 PRILKTGDILRQ--TRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQIISSH-FVSP---TVS 95 (113)
Q Consensus 22 ~ed~~VG~~~~~--~~tit~~di~~fa~~sgD~nPiH~D~~~Ak~~g~~~~iv~G~l~~al~~~~l~~~-lpg~---~~~ 95 (113)
+++..+|++.+. ....|..++++|+++|||+||||+|++||+++||+++|+||||+++++.+.+.++ .++. ...
T Consensus 178 ~~~~~~p~~~pd~~~~~~t~~~~~~~a~lSGD~NPiH~d~~~A~~~gf~~~IaHGm~t~g~~~~~~~~~~~~~~~~~~~~ 257 (310)
T PLN02864 178 VSAVKIPKSQPDAVFEDQTQPSQALLYRLSGDYNPLHSDPMFAKVAGFTRPILHGLCTLGFAVRAVIKCFCNGDPTAVKT 257 (310)
T ss_pred ccccCCCCCCCCeEEeeccChhHHHHHHhhCCCCcccCCHHHHhhCCCCCceeccHHHHHHHHHHHHhhhcCCCCceEEE
Confidence 455778888774 3578999999999999999999999999999999999999999999998877654 3432 356
Q ss_pred EEEEecccchhHHHh
Q 033683 96 FSFFSSFPCVVLWLL 110 (113)
Q Consensus 96 ~~~rF~~PV~v~~~~ 110 (113)
+++||.+||++|--+
T Consensus 258 ~~~rF~~PV~pGdtl 272 (310)
T PLN02864 258 ISGRFLLHVYPGETL 272 (310)
T ss_pred EEEEEcCCccCCCEE
Confidence 789999999998543
No 19
>cd03448 HDE_HSD HDE_HSD The R-hydratase-like hot dog fold of the 17-beta-hydroxysteriod dehydrogenase (HSD), and Hydratase-Dehydrogenase-Epimerase (HDE) proteins. Other enzymes with this fold include MaoC dehydratase, and the fatty acid synthase beta subunit.
Probab=99.76 E-value=1.6e-18 Score=117.36 Aligned_cols=74 Identities=23% Similarity=0.275 Sum_probs=64.8
Q ss_pred eEeeCHHHHHHHHhhcCCCCCCCCCHHHHHhcCCCCceeChHHHHHHHHHHhhhhc-CCCc---eeEEEEecccchhHH
Q 033683 34 TRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQIISSHF-VSPT---VSFSFFSSFPCVVLW 108 (113)
Q Consensus 34 ~~tit~~di~~fa~~sgD~nPiH~D~~~Ak~~g~~~~iv~G~l~~al~~~~l~~~l-pg~~---~~~~~rF~~PV~v~~ 108 (113)
..++++++...|+. |||+||||+|++|||++||+++|+||+++++++.+++.+++ ++.+ ..+++||.+||++|-
T Consensus 10 ~~~~~~~~~~~~~~-SgD~nPiH~d~e~A~~~g~~~~iahG~~t~a~~~~~~~~~~~~~~~~~~~~~~~rF~~PV~~gD 87 (122)
T cd03448 10 EIPTSPDQALLYRL-SGDYNPLHIDPAFAKAAGFPRPILHGLCTYGFAARAVLEAFADGDPARFKAIKVRFSSPVFPGE 87 (122)
T ss_pred EecCCcChHHHHHH-hCCCCccccCHHHHHHcCCCCceehhHHHHHHHHHHHHHHhcCCCcceeEEEEEEEcCCccCCC
Confidence 57889999999975 99999999999999999999999999999999999887765 3332 346899999999984
No 20
>PRK13691 (3R)-hydroxyacyl-ACP dehydratase subunit HadC; Provisional
Probab=99.71 E-value=2.4e-17 Score=116.95 Aligned_cols=84 Identities=19% Similarity=0.297 Sum_probs=65.6
Q ss_pred CCCCcEEee--eEeeCHHHHHHHHhhcCCCCCCCCCHHHHHhcCCCCceeChHHHHHHHHHHhhhh-c----CCC-c---
Q 033683 25 LKTGDILRQ--TRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQIISSH-F----VSP-T--- 93 (113)
Q Consensus 25 ~~VG~~~~~--~~tit~~di~~fa~~sgD~nPiH~D~~~Ak~~g~~~~iv~G~l~~al~~~~l~~~-l----pg~-~--- 93 (113)
=.||+++++ .+++|++++..||.++||.||+|+|++|||+++|+++||||++. +++...+... . +|. .
T Consensus 6 ~~~g~~~~~~~~~~Vt~~~I~~FA~~~GD~nPlH~D~eyA~~s~fg~~IApgt~~-~~~~~~~~~~~~~~~~~g~~~~~~ 84 (166)
T PRK13691 6 DIRGMVWRYPDYFVVGREQIRQFARAVKCDHPAFFSEDAAAELGYDALVAPLTFV-TIFAKYVQLDFFRHVDVGMETMQI 84 (166)
T ss_pred hhCccCcCCCCCeEECHHHHHHHHHHHCCCCCcccCHHHHHhCCCCCcccCHHHH-HHHHHHhccccccccccCCCccee
Confidence 358999986 47999999999999999999999999999999999999999886 4444433321 1 111 1
Q ss_pred e--eEEEEecccchhHHH
Q 033683 94 V--SFSFFSSFPCVVLWL 109 (113)
Q Consensus 94 ~--~~~~rF~~PV~v~~~ 109 (113)
. ..+++|.+||++|--
T Consensus 85 v~~~q~~~f~rPV~~GDt 102 (166)
T PRK13691 85 VQVDQRFVFHKPVLAGDK 102 (166)
T ss_pred eeeeeEEEEeCCcCCCCE
Confidence 1 236889999999843
No 21
>PRK13692 (3R)-hydroxyacyl-ACP dehydratase subunit HadA; Provisional
Probab=99.70 E-value=3.1e-17 Score=115.58 Aligned_cols=86 Identities=14% Similarity=0.106 Sum_probs=67.1
Q ss_pred CccCCCCcEEee--eEeeCHHHHHHHHhhcCCCCCCCCCHHHHHhcCCCCceeChHHHHHHHHHHhh--hh-------cC
Q 033683 22 PRILKTGDILRQ--TRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQIIS--SH-------FV 90 (113)
Q Consensus 22 ~ed~~VG~~~~~--~~tit~~di~~fa~~sgD~nPiH~D~~~Ak~~g~~~~iv~G~l~~al~~~~l~--~~-------lp 90 (113)
.++..||++++. .+++|++++..||.++||.||+|+|++|||+++|+++++|+.+..++ ++.. .+ ++
T Consensus 3 ~~~~~vG~~~~~~~~~tvt~~dI~~FA~~~GD~nPlh~D~e~A~~~~fg~~iA~~~~~~~~--gl~~~~~~~~~~~l~~~ 80 (159)
T PRK13692 3 LSADIVGMHYRYPDHYEVEREKIREYAVAVQNDDAAYFEEDAAAELGYKGLLAPLTFICVF--GYKAQSAFFKHANIAVA 80 (159)
T ss_pred CChhHceeEcCCCCceEeCHHHHHHHHHHHCCCCCCccCHHHHHhcCCCCcccChHHHHHh--hhhhhhhhhhcccCCCC
Confidence 345789999987 48999999999999999999999999999999999999998885432 2221 11 11
Q ss_pred CCc---eeEEEEecccchhHHH
Q 033683 91 SPT---VSFSFFSSFPCVVLWL 109 (113)
Q Consensus 91 g~~---~~~~~rF~~PV~v~~~ 109 (113)
++. ...+++|.+||++|--
T Consensus 81 ~~~~~~~~q~~~f~~PV~~GDt 102 (159)
T PRK13692 81 DAQIVQVDQVLKFEKPIVAGDK 102 (159)
T ss_pred ccceEeeeeEEEEeCCccCCCE
Confidence 111 2257999999999843
No 22
>PF13452 MaoC_dehydrat_N: N-terminal half of MaoC dehydratase; PDB: 3HMJ_H 2UV8_I 2VKZ_G 1S9C_K 3OML_A 3KHP_A.
Probab=99.11 E-value=3.5e-11 Score=81.17 Aligned_cols=83 Identities=17% Similarity=0.085 Sum_probs=56.5
Q ss_pred CCCcEEee-eEeeCHHHHHHHHhhcCCCCCCCCCHHHHHhcCCCCceeChHHHHHHHHHH--hhhhcCCC---c--eeEE
Q 033683 26 KTGDILRQ-TRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQI--ISSHFVSP---T--VSFS 97 (113)
Q Consensus 26 ~VG~~~~~-~~tit~~di~~fa~~sgD~nPiH~D~~~Ak~~g~~~~iv~G~l~~al~~~~--l~~~lpg~---~--~~~~ 97 (113)
.||.++++ ..++|+++++.|+.+.||.||.|.|+++|++.++++.+|++.+...+.... +...++.. . ...+
T Consensus 2 ~iG~~~~~~~~~v~~~~i~~ya~avg~~~p~~~d~~~a~~~~~~~~~apPt~~~~~~~~~~~~~~~~~~~~~~~vh~~~~ 81 (132)
T PF13452_consen 2 WIGREFEPVTYTVTRRDIRRYALAVGDPNPLYLDEEYARAAGHGGLIAPPTFAVVLAWPAPAMFPDLGFDLTRLVHGEQD 81 (132)
T ss_dssp GTT-B-E-EEEEE-HHHHHHHHHHTT-CTTHHHHCTSS--TTSTT-B--GGGHHHHHHHCCGGCGCCSS-GGGEEEEEEE
T ss_pred CCccEeCCeeEEECHHHHHHHHHHhCcCCccccCHhHhhccCCCCcccCHHHHhhhhcccceeeecCCCChhhEEecCcE
Confidence 47998976 799999999999999999999999999999999999999999988776653 22223221 1 2457
Q ss_pred EEecccchhHH
Q 033683 98 FFSSFPCVVLW 108 (113)
Q Consensus 98 ~rF~~PV~v~~ 108 (113)
++|.+|+.+|-
T Consensus 82 ~~~h~Pl~~Gd 92 (132)
T PF13452_consen 82 IEFHRPLRPGD 92 (132)
T ss_dssp EEESS--BSSE
T ss_pred EEEeCCCCCCC
Confidence 99999999874
No 23
>COG3777 Uncharacterized conserved protein [Function unknown]
Probab=98.49 E-value=4.6e-08 Score=73.23 Aligned_cols=75 Identities=19% Similarity=0.320 Sum_probs=66.8
Q ss_pred EeeCHHHHHHHHhhcCCCCCCCCCHHHHHh-cCCCCceeChHHHHHHHHHHhhhhcCCCceeEEEEecccchhHHH
Q 033683 35 RIFSSEDVVEYSKVSHDSNPLHFNSESARN-AGFDDRLVHGMLVASMFPQIISSHFVSPTVSFSFFSSFPCVVLWL 109 (113)
Q Consensus 35 ~tit~~di~~fa~~sgD~nPiH~D~~~Ak~-~g~~~~iv~G~l~~al~~~~l~~~lpg~~~~~~~rF~~PV~v~~~ 109 (113)
.|.|+-++-+|++++-|-|.||+|..|++. .||++.||||.+.+.++.+.+....|.+...++.|-.+|.|++.-
T Consensus 166 ~tptpvllfrYsaltfN~HrIHyD~~Yat~vEgYpgLVvhGPl~atlll~~~~~~~pq~~~Rf~fR~L~p~f~~~~ 241 (273)
T COG3777 166 FTPTPVLLFRYSALTFNGHRIHYDAPYATYVEGYPGLVVHGPLIATLLLRAFQPFLPQPIRRFRFRNLSPAFPNET 241 (273)
T ss_pred CCCCchheeehhhhccCceeeeccCcceeeccCCCCceecchHHHHHHHHHhhhhccccchheeccccccccCCCC
Confidence 466778888999999999999999999985 799999999999999999999887888888889999999988643
No 24
>PLN02864 enoyl-CoA hydratase
Probab=96.93 E-value=0.00072 Score=52.33 Aligned_cols=82 Identities=9% Similarity=-0.027 Sum_probs=61.5
Q ss_pred CCCcEEee-eEeeCHHHHHHHHhhcCCCCCCCCCHHHHHh----cCCCCceeChHHHHHHHHHHhhh---hcCCCc----
Q 033683 26 KTGDILRQ-TRIFSSEDVVEYSKVSHDSNPLHFNSESARN----AGFDDRLVHGMLVASMFPQIISS---HFVSPT---- 93 (113)
Q Consensus 26 ~VG~~~~~-~~tit~~di~~fa~~sgD~nPiH~D~~~Ak~----~g~~~~iv~G~l~~al~~~~l~~---~lpg~~---- 93 (113)
.+|.+++. +..+|+.|++.||...|+.+|.+.|++.++. .|+++..|...+...+....... ..|+.+
T Consensus 13 ~~g~~~p~~~~~~~~~d~~lyAl~vG~~~~~~~d~~~l~~~ye~~g~~~~~a~PTf~~vl~~~~~~~~~~~~p~~~~d~~ 92 (310)
T PLN02864 13 VLAHKFPEVTYSYTERDVALYALGVGACGRDAVDEDELKYVYHRDGQQFIKVLPTFASLFNLGSLDGFGLDLPGLNYDPS 92 (310)
T ss_pred HhCCcCCCeeEEECHHHHHHHHHhcCCCCCCCCChHHhhhhhccccCCCcccCCceeeeccccCcccccccCCCCCCChh
Confidence 37899986 7899999999999999999999999988887 68888899888776654322111 123222
Q ss_pred --e--eEEEEecccchhH
Q 033683 94 --V--SFSFFSSFPCVVL 107 (113)
Q Consensus 94 --~--~~~~rF~~PV~v~ 107 (113)
+ ..++++.+|+.++
T Consensus 93 ~lVHgeq~i~~~rPlp~~ 110 (310)
T PLN02864 93 LLLHGQQYIEIYKPIPSS 110 (310)
T ss_pred heeeccceEEEECCCCCC
Confidence 2 2358888998875
No 25
>PF12119 DUF3581: Protein of unknown function (DUF3581); InterPro: IPR021974 This family consists of uncharacterised bacterial proteins.
Probab=95.22 E-value=0.082 Score=39.07 Aligned_cols=62 Identities=19% Similarity=0.154 Sum_probs=42.9
Q ss_pred eEeeCHHHHHHHHhhc-CCCCCCCCCHHHHHhcCCCCceeChHHHHHHHHHHhhhhcCCCceeEEEEecccchhH
Q 033683 34 TRIFSSEDVVEYSKVS-HDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQIISSHFVSPTVSFSFFSSFPCVVL 107 (113)
Q Consensus 34 ~~tit~~di~~fa~~s-gD~nPiH~D~~~Ak~~g~~~~iv~G~l~~al~~~~l~~~lpg~~~~~~~rF~~PV~v~ 107 (113)
...+|+++.-.||+-. ||+|||| |++. ++=.|||=+.+|++..-. |-...+..+|...|--+
T Consensus 13 ~v~is~~QAS~FAK~VAgDFNPIH-D~Da------KRFCVPGDLLFalvL~~~-----GlS~~M~f~F~GMVg~~ 75 (218)
T PF12119_consen 13 SVSISAEQASRFAKEVAGDFNPIH-DPDA------KRFCVPGDLLFALVLAKY-----GLSQKMRFRFSGMVGDD 75 (218)
T ss_pred EEEEcHHHHhHHHHHhccCCCccC-CCCC------ccccCccHHHHHHHHHhc-----CccceeEEEEeeeecCC
Confidence 5679999999999864 9999999 4442 456899999999876432 22234455665555433
No 26
>PRK04424 fatty acid biosynthesis transcriptional regulator; Provisional
Probab=94.97 E-value=0.044 Score=39.35 Aligned_cols=64 Identities=11% Similarity=-0.006 Sum_probs=42.3
Q ss_pred cCCCCcEEeeeEeeCHHHHHHHHhhcCCCCCCCCCHHHHHhcCCCCceeChHHHHHHHHHHhhhhcCCCce---eEEEEe
Q 033683 24 ILKTGDILRQTRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQIISSHFVSPTV---SFSFFS 100 (113)
Q Consensus 24 d~~VG~~~~~~~tit~~di~~fa~~sgD~nPiH~D~~~Ak~~g~~~~iv~G~l~~al~~~~l~~~lpg~~~---~~~~rF 100 (113)
+++.|..+.....+|.++. |. +.+++||.++++.+.+++....++... .-+++|
T Consensus 79 eie~g~~a~~~k~Vt~ne~--fn---------------------~~~i~hG~f~~aqa~~la~~~~~~~~~~~~i~~irF 135 (185)
T PRK04424 79 DLELGRSAISILEITEEMV--FS---------------------KTGIARGHHLFAQANSLAVAVIDAELALTGVANIRF 135 (185)
T ss_pred EecCCcEEEEEEecChhhc--cC---------------------CCCeecHHHHHHHHHHHHHHhcCCcEEEEEeeeEEE
Confidence 4556766655677777663 11 357999999999988865432333322 137999
Q ss_pred cccchhHHHh
Q 033683 101 SFPCVVLWLL 110 (113)
Q Consensus 101 ~~PV~v~~~~ 110 (113)
.+||++|--|
T Consensus 136 ~kPV~pGD~L 145 (185)
T PRK04424 136 KRPVKLGERV 145 (185)
T ss_pred ccCCCCCCEE
Confidence 9999999543
No 27
>PRK00006 fabZ (3R)-hydroxymyristoyl-ACP dehydratase; Reviewed
Probab=93.35 E-value=0.13 Score=34.95 Aligned_cols=49 Identities=10% Similarity=-0.115 Sum_probs=28.9
Q ss_pred HHHhcCCCCceeChHHH---HHHHHHHhhhh---cCCCce---e-EEEEecccchhHHH
Q 033683 61 SARNAGFDDRLVHGMLV---ASMFPQIISSH---FVSPTV---S-FSFFSSFPCVVLWL 109 (113)
Q Consensus 61 ~Ak~~g~~~~iv~G~l~---~al~~~~l~~~---lpg~~~---~-~~~rF~~PV~v~~~ 109 (113)
|.+....+.+++||.+. ++.+.+++... .++... . -+++|.+||++|--
T Consensus 49 ~~~ghfp~~pi~PG~l~iE~~aQ~~~~~~~~~~~~~~~~~~l~gi~~~kF~~pv~pGd~ 107 (147)
T PRK00006 49 FFQGHFPGYPVMPGVLIIEAMAQAAGVLALKSEENKGKLVYFAGIDKARFKRPVVPGDQ 107 (147)
T ss_pred cccCCCcCCCcCchhHHHHHHHHHHHHHHhcCcCcCCcEEEEeeeeEEEEccccCCCCE
Confidence 44444557899999877 33333332211 122221 1 26999999999854
No 28
>cd01288 FabZ FabZ is a 17kD beta-hydroxyacyl-acyl carrier protein (ACP) dehydratase that primarily catalyzes the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, the third step in the elongation phase of the bacterial/ plastid, type II, fatty-acid biosynthesis pathway.
Probab=93.03 E-value=0.16 Score=33.31 Aligned_cols=53 Identities=13% Similarity=-0.061 Sum_probs=31.9
Q ss_pred CHHHHHhcCCCCceeChHHHHHHHHHHhhh---hc----CCC-ce---eEEEEecccchhHHHh
Q 033683 58 NSESARNAGFDDRLVHGMLVASMFPQIISS---HF----VSP-TV---SFSFFSSFPCVVLWLL 110 (113)
Q Consensus 58 D~~~Ak~~g~~~~iv~G~l~~al~~~~l~~---~l----pg~-~~---~~~~rF~~PV~v~~~~ 110 (113)
|..|.+....+.+++||.+..-.+...... .. .+. +. .-+++|.+||++|-.+
T Consensus 31 d~~~~~~hf~~~pi~Pg~l~iE~~aQ~~~~~~~~~~~~~~~~~~~l~~~~~~kf~~pv~pgd~l 94 (131)
T cd01288 31 NEPFFQGHFPGNPIMPGVLIIEALAQAAGILGLKSLEDFEGKLVYFAGIDKARFRKPVVPGDQL 94 (131)
T ss_pred CChhhcCCCCCCCcCCchHHHHHHHHHHHHHhhhcccccCCcEEEEeeecccEEccccCCCCEE
Confidence 344566666688999998884443333322 11 122 11 1369999999998654
No 29
>PRK13188 bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; Reviewed
Probab=89.82 E-value=0.7 Score=37.96 Aligned_cols=57 Identities=11% Similarity=-0.073 Sum_probs=37.4
Q ss_pred CCCCCHHHHHhcCCCCceeChHHHH---HHHHHHhhh-hcC---CCcee---E-EEEecccchhHHHh
Q 033683 54 PLHFNSESARNAGFDDRLVHGMLVA---SMFPQIISS-HFV---SPTVS---F-SFFSSFPCVVLWLL 110 (113)
Q Consensus 54 PiH~D~~~Ak~~g~~~~iv~G~l~~---al~~~~l~~-~lp---g~~~~---~-~~rF~~PV~v~~~~ 110 (113)
-++.|..|++....+.+++||.+.. |-..+++.. ..+ +.... . +++|.+||++|--|
T Consensus 355 ~Vs~De~ff~GHFPg~PI~PGVL~IEaMAQaagil~~~~~~~~~g~lg~LlgI~kvKF~~PV~PGDtL 422 (464)
T PRK13188 355 NVTMNEPFFQGHFPGNPVMPGVLQIEAMAQTGGILVLNTVPDPENYSTYFMKIDKVKFRQKVVPGDTL 422 (464)
T ss_pred EcCCCcHHhhccCCCCCccccHHHHHHHHHHHHHHHhhccCCCCCceEEEEeccEEEEcCCCCCCCEE
Confidence 3667888888888889999999887 433333321 111 21111 2 68999999998543
No 30
>TIGR02286 PaaD phenylacetic acid degradation protein PaaD. Sequences scoring between trusted and noise include those from archaea and other species not known to catabolize phenylacetic acid and which are not adjacent to other genes potentially involved with such a pathway.
Probab=80.02 E-value=3.4 Score=26.65 Aligned_cols=40 Identities=10% Similarity=-0.061 Sum_probs=28.0
Q ss_pred CceeChHHHHHHHHHHhhhhc--CCC---ceeEEEEecccchhHH
Q 033683 69 DRLVHGMLVASMFPQIISSHF--VSP---TVSFSFFSSFPCVVLW 108 (113)
Q Consensus 69 ~~iv~G~l~~al~~~~l~~~l--pg~---~~~~~~rF~~PV~v~~ 108 (113)
.-++||-..++++..+..-.. .+. ...++++|.+|+.+|-
T Consensus 30 ~g~~HGG~i~al~D~~~~~~~~~~~~~~~t~~~~i~f~rp~~~G~ 74 (114)
T TIGR02286 30 HGTAHGGFLFSLADSAFAYACNSYGDAAVAAQCTIDFLRPGRAGE 74 (114)
T ss_pred CCCchHHHHHHHHHHHHHHHhcCCCCceEEEEEEEEEecCCCCCC
Confidence 358999999988877654222 222 2356899999999983
No 31
>COG1607 Acyl-CoA hydrolase [Lipid metabolism]
Probab=69.30 E-value=7.2 Score=27.58 Aligned_cols=40 Identities=18% Similarity=0.046 Sum_probs=27.2
Q ss_pred eeChHHHHHHHHHHhh----hhcCCCcee--E-EEEecccchhHHHh
Q 033683 71 LVHGMLVASMFPQIIS----SHFVSPTVS--F-SFFSSFPCVVLWLL 110 (113)
Q Consensus 71 iv~G~l~~al~~~~l~----~~lpg~~~~--~-~~rF~~PV~v~~~~ 110 (113)
-+||-|.++++..... ++..+..+. . ++.|.+||.+|-++
T Consensus 30 ~ifGG~lm~~mD~~a~i~A~~~a~~~vVTasvd~v~F~~Pv~vGd~v 76 (157)
T COG1607 30 TIFGGWLLSWMDLAAAIAASRHAGGRVVTASVDSVDFKKPVRVGDIV 76 (157)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhCCeEEEEEeceEEEccccccCcEE
Confidence 3778888887655432 345565443 2 59999999999764
No 32
>cd03440 hot_dog The hotdog fold was initially identified in the E. coli FabA (beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase) structure and subsequently in 4HBT (4-hydroxybenzoyl-CoA thioesterase) from Pseudomonas. A number of other seemingly unrelated proteins also share the hotdog fold. These proteins have related, but distinct, catalytic activities that include metabolic roles such as thioester hydrolysis in fatty acid metabolism, and degradation of phenylacetic acid and the environmental pollutant 4-chlorobenzoate. This superfamily also includes the PaaI-like protein FapR, a non-catalytic bacterial homolog involved in transcriptional regulation of fatty acid biosynthesis.
Probab=67.11 E-value=7.7 Score=21.65 Aligned_cols=42 Identities=17% Similarity=0.061 Sum_probs=30.2
Q ss_pred CCceeChHHHHHHHHHHhhhhcC-----CC---ceeEEEEecccchhHHH
Q 033683 68 DDRLVHGMLVASMFPQIISSHFV-----SP---TVSFSFFSSFPCVVLWL 109 (113)
Q Consensus 68 ~~~iv~G~l~~al~~~~l~~~lp-----g~---~~~~~~rF~~PV~v~~~ 109 (113)
....+||.....++......++. +. ...++++|.+|+..|-.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 63 (100)
T cd03440 14 GGGIVHGGLLLALADEAAGAAAARLGGRGLGAVTLSLDVRFLRPVRPGDT 63 (100)
T ss_pred cCCccchHHHHHHHHHHHHHHHHHhccCCCeEEEEEEEeEEecCCCCCCE
Confidence 45689999998888887765432 11 23467999999998653
No 33
>PHA00098 hypothetical protein
Probab=60.37 E-value=9.4 Score=25.17 Aligned_cols=40 Identities=20% Similarity=0.424 Sum_probs=24.9
Q ss_pred CCCcEEee---eEeeCHHHHHHHHh----hcCC----CCCCCCCHHHHHhc
Q 033683 26 KTGDILRQ---TRIFSSEDVVEYSK----VSHD----SNPLHFNSESARNA 65 (113)
Q Consensus 26 ~VG~~~~~---~~tit~~di~~fa~----~sgD----~nPiH~D~~~Ak~~ 65 (113)
.-|+.+.. +|.+.+-....|++ .+|| -+|+|+|++||+..
T Consensus 14 ~rG~~iA~LNv~Rpl~~Vn~Ekf~r~~lG~~~dvp~~~qpL~Id~~YA~~L 64 (112)
T PHA00098 14 KRGTTIAELNVLRPVETVNVEKFAQYGLGLNTDIPFNKQPLRIEPTYAKRL 64 (112)
T ss_pred CCCceeeeeeccccchhhhHHHHHHhccccCCCcCcCCCceEeCHHHHHHH
Confidence 34776432 45555555555554 2344 46899999999863
No 34
>cd00493 FabA_FabZ FabA/Z, beta-hydroxyacyl-acyl carrier protein (ACP)-dehydratases: One of several distinct enzyme types of the dissociative, type II, fatty acid synthase system (found in bacteria and plants) required to complete successive cycles of fatty acid elongation. The third step of the elongation cycle, the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, is catalyzed by FabA or FabZ. FabA is bifunctional and catalyzes an additional isomerization reaction of trans-2-acyl-ACP to cis-3-acyl-ACP, an essential reaction to unsaturated fatty acid synthesis. FabZ is the primary dehydratase that participates in the elongation cycles of saturated as well as unsaturated fatty acid biosynthesis, whereas FabA is more active in the dehydration of beta-hydroxydecanoyl-ACP. The FabA structure is homodimeric with two independent active sites located at the dimer interface.
Probab=58.69 E-value=14 Score=23.68 Aligned_cols=41 Identities=12% Similarity=-0.044 Sum_probs=24.9
Q ss_pred CCceeChHHHHHHHHHHhhhhc---------CCC-ce--e-EEEEecccchhHH
Q 033683 68 DDRLVHGMLVASMFPQIISSHF---------VSP-TV--S-FSFFSSFPCVVLW 108 (113)
Q Consensus 68 ~~~iv~G~l~~al~~~~l~~~l---------pg~-~~--~-~~~rF~~PV~v~~ 108 (113)
+.++++|.+..-.+....+.+. ++. +. . -+++|.+||++|-
T Consensus 40 ~~p~lPg~~~iE~~aQ~~~~~~~~~~~~~~~~~~~~~l~~~~~~kf~~~v~pgd 93 (131)
T cd00493 40 GDPVMPGVLGIEAMAQAAAALAGLLGLGKGNPPRLGYLAGVRKVKFRGPVLPGD 93 (131)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHhcccccccCCcEEEEEEcceeEECCCcCCCC
Confidence 3578888777665555444321 111 11 1 2699999999985
No 35
>PF03061 4HBT: Thioesterase superfamily; InterPro: IPR006683 This family contains a wide variety of enzymes, principally thioesterases. This family includes 4HBT (3.1.2.23 from EC) which catalyses the final step in the biosynthesis of 4-hydroxybenzoate from 4-chlorobenzoate in the soil dwelling microbe Pseudomonas CBS-3. This family includes various cytosolic long-chain acyl-CoA thioester hydrolases. Long-chain acyl-CoA hydrolases hydrolyse palmitoyl-CoA to CoA and palmitate, they also catalyse the hydrolysis of other long chain fatty acyl-CoA thioesters. ; PDB: 3F5O_F 2F0X_D 2H4U_C 2PRX_A 2OV9_D 1YLI_B 3BJK_F 1IXL_A 3DKZ_B 2EIS_B ....
Probab=51.70 E-value=19 Score=20.73 Aligned_cols=37 Identities=27% Similarity=0.163 Sum_probs=24.8
Q ss_pred eeChHHHHHHHHHHhhhh----cCC-C---ceeEEEEecccchhH
Q 033683 71 LVHGMLVASMFPQIISSH----FVS-P---TVSFSFFSSFPCVVL 107 (113)
Q Consensus 71 iv~G~l~~al~~~~l~~~----lpg-~---~~~~~~rF~~PV~v~ 107 (113)
++||-...+++....... .++ . ..+.+++|.+|+..|
T Consensus 3 ~v~~g~~~~~~d~a~~~~~~~~~~~~~~~~~~~~~i~f~~p~~~g 47 (79)
T PF03061_consen 3 IVHGGVYLSLFDEAASAALRSHGGDGRGVVTVELSIDFLRPVRPG 47 (79)
T ss_dssp SBCHHHHHHHHHHHHHHHHHHHHSSTEEEEEEEEEEEESS-BBTT
T ss_pred EEhHHHHHHHHHHHHHHHHHHhccCCcceEEEEEEEEEccccCCC
Confidence 678887888877665543 222 1 345689999999988
No 36
>TIGR01750 fabZ beta-hydroxyacyl-[acyl carrier protein] dehydratase FabZ. This enzyme, FabZ, shows overlapping substrate specificity with FabA with regard to chain length in fatty acid biosynthesis. FabZ works preferentially on shorter chains and is often designated (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase, although its actual specificity is broader. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains.
Probab=50.36 E-value=32 Score=22.78 Aligned_cols=43 Identities=14% Similarity=0.061 Sum_probs=25.4
Q ss_pred CCceeChHHHHHHHHHHhhhh----c---CC--Cc---ee-EEEEecccchhHHHh
Q 033683 68 DDRLVHGMLVASMFPQIISSH----F---VS--PT---VS-FSFFSSFPCVVLWLL 110 (113)
Q Consensus 68 ~~~iv~G~l~~al~~~~l~~~----l---pg--~~---~~-~~~rF~~PV~v~~~~ 110 (113)
+.++++|.+..-.+....+-+ . ++ .. .. -+++|.+||++|--|
T Consensus 49 ~~pv~Pg~l~iE~~aQ~~~~~~~~~~~~~~~~~~~~~l~~~~~~kF~~~v~pGd~l 104 (140)
T TIGR01750 49 EKPIMPGVLIVEALAQAGGVLAILSLGGEIGKGKLVYFAGIDKAKFRRPVVPGDQL 104 (140)
T ss_pred CcCcChHHHHHHHHHHHHHHHheccccccCCCCcEEEEeecceeEECCccCCCCEE
Confidence 457899977765554443211 1 11 11 11 269999999998643
No 37
>PRK00299 sulfur transfer protein SirA; Reviewed
Probab=47.42 E-value=9.3 Score=23.62 Aligned_cols=41 Identities=12% Similarity=0.294 Sum_probs=29.7
Q ss_pred ccccCCCCC--ccccCCCCCccCCCCcEEee--eEeeCHHHHHHHHhhcC
Q 033683 5 NLLSTKPPL--LRYFSSLEPRILKTGDILRQ--TRIFSSEDVVEYSKVSH 50 (113)
Q Consensus 5 ~~~~~~~~~--~~~~~~~~~ed~~VG~~~~~--~~tit~~di~~fa~~sg 50 (113)
.+.||-|-. .+.+++ +++|+.+.. .-.-+.+|+..|++.+|
T Consensus 16 Gl~CP~Pll~~kk~l~~-----l~~G~~l~V~~dd~~~~~di~~~~~~~G 60 (81)
T PRK00299 16 GLRCPEPVMMVRKTVRN-----MQPGETLLIIADDPATTRDIPSFCRFMD 60 (81)
T ss_pred CCCCCHHHHHHHHHHHc-----CCCCCEEEEEeCCccHHHHHHHHHHHcC
Confidence 355665533 224555 999999885 57789999999999776
No 38
>cd03443 PaaI_thioesterase PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not been determined. Sequence similarity between PaaI, E. coli medium chain acyl-CoA thioesterase II, and human thioesterase III suggests they all belong to the same thioesterase superfamily. The conserved fold present in these thioesterases is referred to as an asymmetric hot dog fold, similar to those of 4-hydroxybenzoyl-CoA thioesterase (4HBT) and the beta-hydroxydecanoyl-ACP dehydratases (FabA/FabZ).
Probab=46.46 E-value=41 Score=20.75 Aligned_cols=38 Identities=18% Similarity=0.094 Sum_probs=26.5
Q ss_pred ceeChHHHHHHHHHHhhhh----c-CCC---ceeEEEEecccchhH
Q 033683 70 RLVHGMLVASMFPQIISSH----F-VSP---TVSFSFFSSFPCVVL 107 (113)
Q Consensus 70 ~iv~G~l~~al~~~~l~~~----l-pg~---~~~~~~rF~~PV~v~ 107 (113)
.++||....+++....... . ++. ..+++++|.+|+..+
T Consensus 29 g~vhgg~l~~l~d~a~~~~~~~~~~~~~~~~~~~~~i~f~~p~~~~ 74 (113)
T cd03443 29 GIVHGGAIATLADTAGGLAALSALPPGALAVTVDLNVNYLRPARGG 74 (113)
T ss_pred CeEeHHHHHHHHHHHHHHHHhhccCCCCceEEEEEEEeEEcCCCCC
Confidence 4899998888887776532 2 122 345689999999863
No 39
>COG2050 PaaI HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=46.32 E-value=32 Score=22.97 Aligned_cols=41 Identities=12% Similarity=0.042 Sum_probs=28.9
Q ss_pred CCceeChHHHHHHHHHHhhh----hcCC-C---ceeEEEEecccchhHH
Q 033683 68 DDRLVHGMLVASMFPQIISS----HFVS-P---TVSFSFFSSFPCVVLW 108 (113)
Q Consensus 68 ~~~iv~G~l~~al~~~~l~~----~lpg-~---~~~~~~rF~~PV~v~~ 108 (113)
+.-++||-+.++++....+- .++. . ..+++++|.+|+..|-
T Consensus 49 ~~G~~HGG~i~alaD~a~~~a~~~~~~~~~~~~ti~l~i~flr~~~~g~ 97 (141)
T COG2050 49 PGGILHGGVIAALADSAAGLAANSLLGVVALAVTLELNINFLRPVKEGD 97 (141)
T ss_pred CCceeeHHHHHHHHHHHHHHHHhhccCccceeEEEEEEehhccCCCCCe
Confidence 45699999999987666542 2222 1 2467899999998875
No 40
>COG5496 Predicted thioesterase [General function prediction only]
Probab=46.24 E-value=68 Score=22.04 Aligned_cols=66 Identities=8% Similarity=0.021 Sum_probs=36.4
Q ss_pred CCCcEEeeeEeeCHHHHHHHHhhcCCCCCCCCCHHHHHhcCCCCceeChHHHHHHHHHH----hhhhcCCC----ceeEE
Q 033683 26 KTGDILRQTRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQI----ISSHFVSP----TVSFS 97 (113)
Q Consensus 26 ~VG~~~~~~~tit~~di~~fa~~sgD~nPiH~D~~~Ak~~g~~~~iv~G~l~~al~~~~----l~~~lpg~----~~~~~ 97 (113)
.+|......+.+++++-..++. .++-...++-+.+. +++... +..+++.. |....
T Consensus 2 ~~g~~~e~~~lv~dn~t~~~~~----------------~~~~~~VlATp~mi-~~~E~a~~el~~~~Ld~g~ttVG~ev~ 64 (130)
T COG5496 2 MDGLTLEGEFLVRDNHTVPPAE----------------GSGMLNVLATPAMI-GFMENASYELLQPYLDNGETTVGTEVL 64 (130)
T ss_pred CCceeeEEEEEecccccCchhH----------------hCCccceeehHHHH-HHHHHHHHHHHHhhCcCCcceeeEEEE
Confidence 4566666666666554443333 34444455555543 333322 33455532 44567
Q ss_pred EEecccchhHH
Q 033683 98 FFSSFPCVVLW 108 (113)
Q Consensus 98 ~rF~~PV~v~~ 108 (113)
+|-.+|+.+|.
T Consensus 65 vrHla~~~~G~ 75 (130)
T COG5496 65 VRHLAATPPGL 75 (130)
T ss_pred eeeccCCCCCC
Confidence 89999998885
No 41
>PRK10694 acyl-CoA esterase; Provisional
Probab=45.28 E-value=28 Score=23.51 Aligned_cols=40 Identities=13% Similarity=-0.096 Sum_probs=25.4
Q ss_pred eeChHHHHHHHHHHhh----hhcCCCce--eE-EEEecccchhHHHh
Q 033683 71 LVHGMLVASMFPQIIS----SHFVSPTV--SF-SFFSSFPCVVLWLL 110 (113)
Q Consensus 71 iv~G~l~~al~~~~l~----~~lpg~~~--~~-~~rF~~PV~v~~~~ 110 (113)
.+||-..+.++..... ++..+... .+ +++|.+|+.+|-++
T Consensus 28 ~lfGG~ll~~~D~~a~i~a~~~~~~~~vtv~vd~i~F~~Pv~~Gd~l 74 (133)
T PRK10694 28 DIFGGWLMSQMDIGGAILAKEIAHGRVVTVRVEGMTFLRPVAVGDVV 74 (133)
T ss_pred cEeHHHHHHHHHHHHHHHHHHHcCCceEEEEECceEECCCcccCcEE
Confidence 7777777776554422 22333332 33 57999999999876
No 42
>COG0764 FabA 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases [Lipid metabolism]
Probab=44.91 E-value=28 Score=24.20 Aligned_cols=43 Identities=12% Similarity=0.103 Sum_probs=25.7
Q ss_pred CCceeChHHHHHHH---HHHhhhhcCC-Cc-----ee-EEEEecccchhHHHh
Q 033683 68 DDRLVHGMLVASMF---PQIISSHFVS-PT-----VS-FSFFSSFPCVVLWLL 110 (113)
Q Consensus 68 ~~~iv~G~l~~al~---~~~l~~~lpg-~~-----~~-~~~rF~~PV~v~~~~ 110 (113)
+.++++|-+..--+ .+++..+..+ .+ .. -++||++||.+|.-+
T Consensus 54 ~~PimPGVLileamaQ~~g~~~~~~~~~~~~~~~~~gid~~kF~~~V~PGd~l 106 (147)
T COG0764 54 GDPIMPGVLILEAMAQAAGFLLGWLLGNKGKLGYFLGIDNAKFKRPVLPGDQL 106 (147)
T ss_pred CCCCcchhHHHHHHHHHHHHHHhccccCCccEEEEEEecceeecCccCCCCEE
Confidence 46899997665433 3333334433 22 12 269999999998653
No 43
>PF14765 PS-DH: Polyketide synthase dehydratase; PDB: 3KG7_D 3KG9_A 3KG8_B 3HRR_A 3HRQ_A 3EL6_A 3KG6_B 2VZ8_A 2VZ9_A.
Probab=43.82 E-value=40 Score=24.72 Aligned_cols=40 Identities=15% Similarity=0.081 Sum_probs=28.8
Q ss_pred CCCceeChHHHHHHHHHHhhhhcCCCceeE-EEEecccchh
Q 033683 67 FDDRLVHGMLVASMFPQIISSHFVSPTVSF-SFFSSFPCVV 106 (113)
Q Consensus 67 ~~~~iv~G~l~~al~~~~l~~~lpg~~~~~-~~rF~~PV~v 106 (113)
.+.++++|.....++...+....++....+ +++|.+|+.+
T Consensus 36 ~g~~i~Pga~~le~~~~Aa~~~~~~~~~~l~~~~~~~pl~l 76 (295)
T PF14765_consen 36 QGQPILPGAAYLEMALEAARQLSPSSVVELRDLRFHRPLVL 76 (295)
T ss_dssp TTEEEE-HHHHHHHHHHHHHHHTCSSEEEEEEEEE-S-EEE
T ss_pred CCEeeehhHHHHHHHHHHHHHhhCcccceEEEeEecccEEe
Confidence 467899999999998888777666665554 6999999864
No 44
>cd03422 YedF YedF is a bacterial SirA-like protein of unknown function. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=40.91 E-value=15 Score=21.81 Aligned_cols=41 Identities=22% Similarity=0.216 Sum_probs=30.1
Q ss_pred ccccCCCCC--ccccCCCCCccCCCCcEEee--eEeeCHHHHHHHHhhcC
Q 033683 5 NLLSTKPPL--LRYFSSLEPRILKTGDILRQ--TRIFSSEDVVEYSKVSH 50 (113)
Q Consensus 5 ~~~~~~~~~--~~~~~~~~~ed~~VG~~~~~--~~tit~~di~~fa~~sg 50 (113)
.+.||-|-. ...+++ +..||.+.. ....+.+++..|++..|
T Consensus 6 G~~CP~Pvi~~kkal~~-----l~~G~~l~V~~d~~~s~~ni~~~~~~~g 50 (69)
T cd03422 6 GEPCPYPAIATLEALPS-----LKPGEILEVISDCPQSINNIPIDARNHG 50 (69)
T ss_pred CCcCCHHHHHHHHHHHc-----CCCCCEEEEEecCchHHHHHHHHHHHcC
Confidence 456666644 224555 999998875 67889999999998665
No 45
>cd03420 SirA_RHOD_Pry_redox SirA_RHOD_Pry_redox. SirA-like domain located within a multidomain protein of unknown function. Other domains include RHOD (rhodanese homology domain), and Pry_redox (pyridine nucleotide-disulphide oxidoreductase) as well as a C-terminal domain that corresponds to COG2210. This fold is referred to as a two-layered alpha/beta sandwich, structurally similar to that of translation initiation factor 3.
Probab=38.91 E-value=30 Score=20.47 Aligned_cols=41 Identities=20% Similarity=0.230 Sum_probs=29.4
Q ss_pred ccccCCCCC--ccccCCCCCccCCCCcEEee--eEeeCHHHHHHHHhhcC
Q 033683 5 NLLSTKPPL--LRYFSSLEPRILKTGDILRQ--TRIFSSEDVVEYSKVSH 50 (113)
Q Consensus 5 ~~~~~~~~~--~~~~~~~~~ed~~VG~~~~~--~~tit~~di~~fa~~sg 50 (113)
++.||-|-. ...+++ ++.|+.+.. ...-+.+|+..|++..|
T Consensus 6 G~~CP~Pvl~~kkal~~-----l~~G~~l~V~~d~~~a~~di~~~~~~~G 50 (69)
T cd03420 6 GLQCPGPILKLKKEIDK-----LQDGEQLEVKASDPGFARDAQAWCKSTG 50 (69)
T ss_pred CCcCCHHHHHHHHHHHc-----CCCCCEEEEEECCccHHHHHHHHHHHcC
Confidence 455665533 223444 999999885 57889999999998776
No 46
>cd03423 SirA SirA (also known as UvrY, and YhhP) belongs to a family of two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is thought to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=38.40 E-value=16 Score=21.65 Aligned_cols=41 Identities=20% Similarity=0.305 Sum_probs=29.2
Q ss_pred ccccCCCCC--ccccCCCCCccCCCCcEEee--eEeeCHHHHHHHHhhcC
Q 033683 5 NLLSTKPPL--LRYFSSLEPRILKTGDILRQ--TRIFSSEDVVEYSKVSH 50 (113)
Q Consensus 5 ~~~~~~~~~--~~~~~~~~~ed~~VG~~~~~--~~tit~~di~~fa~~sg 50 (113)
.+.||-|-. .+.+++ +..|+.+.. .-..+.+|+..|++..|
T Consensus 6 G~~CP~P~i~~k~~l~~-----l~~G~~l~V~~dd~~s~~di~~~~~~~g 50 (69)
T cd03423 6 GLRCPEPVMMLHKKVRK-----MKPGDTLLVLATDPSTTRDIPKFCTFLG 50 (69)
T ss_pred CCcCCHHHHHHHHHHHc-----CCCCCEEEEEeCCCchHHHHHHHHHHcC
Confidence 355666533 223555 999998875 56789999999998766
No 47
>PF06950 DUF1293: Protein of unknown function (DUF1293); InterPro: IPR009712 This entry is represented by Vibrio phage Vf33, Vpf117. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial and phage proteins of around 115 residues in length. The function of this family is unknown.
Probab=37.13 E-value=30 Score=23.07 Aligned_cols=39 Identities=21% Similarity=0.382 Sum_probs=23.9
Q ss_pred CCcEEee--eEeeCHHHHHHHHh----hcCCCC-----CCCCCHHHHHhc
Q 033683 27 TGDILRQ--TRIFSSEDVVEYSK----VSHDSN-----PLHFNSESARNA 65 (113)
Q Consensus 27 VG~~~~~--~~tit~~di~~fa~----~sgD~n-----PiH~D~~~Ak~~ 65 (113)
-|++... .|.+.+-+...|.+ .++|.| |+++|..||+..
T Consensus 18 sg~~A~Lnvlrp~~~Vn~eKF~r~~iG~~tdvnP~~kqpL~I~~~YA~~L 67 (115)
T PF06950_consen 18 SGESAELNVLRPLEEVNSEKFKRRTIGESTDVNPQNKQPLRIDHDYAKKL 67 (115)
T ss_pred CCceeEEEeeccchhcchHHhhhcccccccccCcCCCCCeEecHHHHHHH
Confidence 3555443 45555544444443 467774 799999999763
No 48
>COG0425 SirA Predicted redox protein, regulator of disulfide bond formation [Posttranslational modification, protein turnover, chaperones]
Probab=32.90 E-value=38 Score=20.83 Aligned_cols=42 Identities=24% Similarity=0.330 Sum_probs=30.2
Q ss_pred ccccCCC-CCcc-ccCCCCCccCCCCcEEee--eEeeCHHHHHHHHhhcCC
Q 033683 5 NLLSTKP-PLLR-YFSSLEPRILKTGDILRQ--TRIFSSEDVVEYSKVSHD 51 (113)
Q Consensus 5 ~~~~~~~-~~~~-~~~~~~~ed~~VG~~~~~--~~tit~~di~~fa~~sgD 51 (113)
.++||=| |..+ ..++ +++|+.+.. .-.-+..|+..|+...|.
T Consensus 12 G~~CP~Pv~~~kk~l~~-----m~~Ge~LeV~~ddp~~~~dIp~~~~~~~~ 57 (78)
T COG0425 12 GLRCPGPVVETKKALAK-----LKPGEILEVIADDPAAKEDIPAWAKKEGG 57 (78)
T ss_pred CCcCCccHHHHHHHHHc-----CCCCCEEEEEecCcchHHHHHHHHHHcCC
Confidence 4566666 3333 4556 999999985 577888999999995553
No 49
>TIGR01749 fabA beta-hydroxyacyl-[acyl carrier protein] dehydratase FabA. This enzyme, FabA, shows overlapping substrate specificity with FabZ with regard to chain length in fatty acid biosynthesis. It is commonly designated 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60) as if it were specific for that chain length, but its specificity is broader; it is active even in the initiation of fatty acid biosynthesis. This enzyme can also isomerize trans-2-decenoyl-ACP to cis-3-decenoyl-ACP to bypass reduction by FabI and instead allow biosynthesis of unsaturated fatty acids. FabA cannot elongate unsaturated fatty acids.
Probab=31.14 E-value=80 Score=22.27 Aligned_cols=42 Identities=10% Similarity=-0.060 Sum_probs=25.6
Q ss_pred CCCceeChHHHHHHHHHHhhhhc-----CCCce--e-EEEEecccchhHH
Q 033683 67 FDDRLVHGMLVASMFPQIISSHF-----VSPTV--S-FSFFSSFPCVVLW 108 (113)
Q Consensus 67 ~~~~iv~G~l~~al~~~~l~~~l-----pg~~~--~-~~~rF~~PV~v~~ 108 (113)
.+.+++||.+..=.+...++-+. ++.+. . -+++|++||++|.
T Consensus 70 p~~PvmPG~L~iEamAQ~~~~~~~~~~~~~~g~l~gi~~~kfr~~v~Pgd 119 (169)
T TIGR01749 70 IGDPVMPGCLGLDAMWQLVGFFLGWLGGPGRGRALGVGEVKFTGQVLPTA 119 (169)
T ss_pred CCCCcCchHHHHHHHHHHHHHHHhccccCCceEEeeccEEEEccCEecCC
Confidence 35788999877655554443221 11111 1 1699999999984
No 50
>PLN02647 acyl-CoA thioesterase
Probab=30.24 E-value=51 Score=27.04 Aligned_cols=15 Identities=20% Similarity=-0.228 Sum_probs=13.2
Q ss_pred EEEecccchhHHHhh
Q 033683 97 SFFSSFPCVVLWLLL 111 (113)
Q Consensus 97 ~~rF~~PV~v~~~~~ 111 (113)
++.|.+||.||.+|-
T Consensus 340 ~v~F~~PV~vGdil~ 354 (437)
T PLN02647 340 HVDFLRPVDVGDFLR 354 (437)
T ss_pred ceEecCccccCcEEE
Confidence 599999999998764
No 51
>PF10017 Methyltransf_33: Histidine-specific methyltransferase, SAM-dependent; InterPro: IPR019257 This domain is found in methyltransferases and various hypothetical proteins.
Probab=29.20 E-value=73 Score=21.19 Aligned_cols=27 Identities=15% Similarity=0.292 Sum_probs=22.9
Q ss_pred cCCCCcEEee--eEeeCHHHHHHHHhhcC
Q 033683 24 ILKTGDILRQ--TRIFSSEDVVEYSKVSH 50 (113)
Q Consensus 24 d~~VG~~~~~--~~tit~~di~~fa~~sg 50 (113)
.|+.|+++.. +++.|++++...+..+|
T Consensus 81 ~~~~GE~I~~e~S~Ky~~~~~~~l~~~aG 109 (127)
T PF10017_consen 81 HFKEGERIHTENSYKYSPEEFEALAEQAG 109 (127)
T ss_pred EECCCCEEEEEEeeCcCHHHHHHHHHHCC
Confidence 5788999986 89999999999888654
No 52
>PF07977 FabA: FabA-like domain; InterPro: IPR013114 Fatty acids biosynthesis occurs by two distinct pathways: in fungi, mammals and mycobacteria, type I or associative fatty-acid biosynthesis (type I FAS) is accomplished by multifunctional proteins in which distinct domains catalyse specific reactions; in plants and most bacteria, type II or dissociative fatty-acid biosynthesis (type II FAS) is accomplished by distinct enzymes []. Both FabZ and FabA catalyse the dehydration of beta-hydroxyacyl acyl carrier protein (ACP) to trans 2-enoyl ACP. However, FabZ and FabA display subtle differences in substrate specificities, whereby FabA is most effective on acyl ACPs of 9-11 carbon atoms in length, while FabZ is less specific. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains. This enzyme domain has a HotDog fold.; PDB: 3D6X_F 2GLV_J 2GLM_E 2GLP_E 2GLL_C 1U1Z_F 3ESI_A 3AZB_T 3AZA_M 3AZ9_U ....
Probab=28.16 E-value=51 Score=21.82 Aligned_cols=12 Identities=8% Similarity=-0.424 Sum_probs=8.1
Q ss_pred EEEecccchhHH
Q 033683 97 SFFSSFPCVVLW 108 (113)
Q Consensus 97 ~~rF~~PV~v~~ 108 (113)
+++|.+||.+|.
T Consensus 90 ~~kF~~~v~Pg~ 101 (138)
T PF07977_consen 90 NVKFRGPVYPGD 101 (138)
T ss_dssp EEEE-S-B-TTE
T ss_pred EEEECccEeCCC
Confidence 699999999987
No 53
>TIGR00369 unchar_dom_1 uncharacterized domain 1. Most proteins containing this domain consist almost entirely of a single copy of this domain. A protein from C. elegans consists of two tandem copies of the domain. The domain is also found as the N-terminal region of an apparent initiation factor eIF-2B alpha subunit of Aquifex aeolicus. The function of the domain is unknown.
Probab=27.35 E-value=1.3e+02 Score=19.10 Aligned_cols=38 Identities=13% Similarity=-0.048 Sum_probs=25.1
Q ss_pred ceeChHHHHHHHHHHhh----hhcC-CC---ceeEEEEecccchhH
Q 033683 70 RLVHGMLVASMFPQIIS----SHFV-SP---TVSFSFFSSFPCVVL 107 (113)
Q Consensus 70 ~iv~G~l~~al~~~~l~----~~lp-g~---~~~~~~rF~~PV~v~ 107 (113)
-.+||-..++++..... ...+ +. ..+++++|.+|+..|
T Consensus 33 g~vhGG~l~~l~D~a~~~a~~~~~~~~~~~vt~~l~i~f~~p~~~g 78 (117)
T TIGR00369 33 GSLHGGVSAALADTAGSAAGYLCNSGGQAVVGLELNANHLRPAREG 78 (117)
T ss_pred ccChHHHHHHHHHHHHHHHHHhhcCCCceEEEEEEEeeeccccCCC
Confidence 47888888887664441 1122 22 235689999999888
No 54
>PF13622 4HBT_3: Thioesterase-like superfamily; PDB: 2PIM_A 3RQB_A 3CJY_A 3RD7_A 3BBJ_B.
Probab=23.35 E-value=1.3e+02 Score=21.64 Aligned_cols=39 Identities=21% Similarity=0.245 Sum_probs=26.4
Q ss_pred CceeChHHHHHHHHHHhhhhcCC---CceeEEEEecccchhH
Q 033683 69 DRLVHGMLVASMFPQIISSHFVS---PTVSFSFFSSFPCVVL 107 (113)
Q Consensus 69 ~~iv~G~l~~al~~~~l~~~lpg---~~~~~~~rF~~PV~v~ 107 (113)
+..+||-++++++...+....++ ...++.+.|.+|+..|
T Consensus 9 g~~~~GG~~a~~~~~A~~~~~~~~~~~~~s~~~~fl~p~~~~ 50 (255)
T PF13622_consen 9 GRVVHGGYLAQLLAAAARTHAPPPGFDPHSLHVYFLRPVPPG 50 (255)
T ss_dssp TTCE-HHHHHHHHHHHHHHCHTTTSSEEEEEEEEESS--BSC
T ss_pred CCcChhHHHHHHHHHHHHHhccCCCCceEEEEeEeccccccC
Confidence 56788888888888877765422 2467889999998776
No 55
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=22.16 E-value=42 Score=19.52 Aligned_cols=28 Identities=18% Similarity=0.254 Sum_probs=21.9
Q ss_pred cCCCCcEEee--eEeeCHHHHHHHHhhcCC
Q 033683 24 ILKTGDILRQ--TRIFSSEDVVEYSKVSHD 51 (113)
Q Consensus 24 d~~VG~~~~~--~~tit~~di~~fa~~sgD 51 (113)
++..|+.+.. ...-+.+|+..|+...|-
T Consensus 23 ~l~~G~~l~v~~d~~~~~~di~~~~~~~g~ 52 (70)
T PF01206_consen 23 ELPPGEVLEVLVDDPAAVEDIPRWCEENGY 52 (70)
T ss_dssp TSGTT-EEEEEESSTTHHHHHHHHHHHHTE
T ss_pred hcCCCCEEEEEECCccHHHHHHHHHHHCCC
Confidence 3999999985 567788999999987763
No 56
>cd03445 Thioesterase_II_repeat2 Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=20.63 E-value=2.3e+02 Score=17.61 Aligned_cols=39 Identities=15% Similarity=-0.036 Sum_probs=29.8
Q ss_pred CCceeChHHHHHHHHHHhhhhcCC--CceeEEEEecccchh
Q 033683 68 DDRLVHGMLVASMFPQIISSHFVS--PTVSFSFFSSFPCVV 106 (113)
Q Consensus 68 ~~~iv~G~l~~al~~~~l~~~lpg--~~~~~~~rF~~PV~v 106 (113)
++..++|-+++|.....+.+..|. ...++...|.+|+..
T Consensus 14 ~~~~~~GG~l~a~a~~Aa~~~~~~~~~~~s~~~~Fl~p~~~ 54 (94)
T cd03445 14 QGRGVFGGQVLAQALVAAARTVPDDRVPHSLHSYFLRPGDP 54 (94)
T ss_pred CCCceEHHHHHHHHHHHHHhhCCCCCCeEEEEEEecCCCCC
Confidence 567889999999888877766664 345678899988754
No 57
>cd00556 Thioesterase_II Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=20.58 E-value=79 Score=18.96 Aligned_cols=42 Identities=21% Similarity=0.227 Sum_probs=27.9
Q ss_pred CceeChHHHHHHHHHHhhhhcC-------CCceeEEEEecccchh-HHHh
Q 033683 69 DRLVHGMLVASMFPQIISSHFV-------SPTVSFSFFSSFPCVV-LWLL 110 (113)
Q Consensus 69 ~~iv~G~l~~al~~~~l~~~lp-------g~~~~~~~rF~~PV~v-~~~~ 110 (113)
+..+||-..+++....+..... ....++++.|.+|... .|++
T Consensus 14 ~~~~hgg~la~l~D~a~~~~~~~~~~~~~~~t~~~~i~F~~~~~~~~~~~ 63 (99)
T cd00556 14 DRRVFGGQLAAQSDLAALRTVPRPHGASGFASLDHHIYFHRPGDADEWLL 63 (99)
T ss_pred CHHHHHHHHHHHHHHHHHhhhhcccCCCCeeeeEEEEEEcCCCCCCccEE
Confidence 5688888888877666543221 1234668999999988 4554
No 58
>smart00279 HhH2 Helix-hairpin-helix class 2 (Pol1 family) motifs.
Probab=20.22 E-value=76 Score=16.56 Aligned_cols=15 Identities=20% Similarity=0.474 Sum_probs=12.0
Q ss_pred HHHHHHHhhcCCCCC
Q 033683 40 EDVVEYSKVSHDSNP 54 (113)
Q Consensus 40 ~di~~fa~~sgD~nP 54 (113)
+++..|+.++||+..
T Consensus 2 ~q~~~~~~L~GD~~d 16 (36)
T smart00279 2 EQLIDYAILVGDYSD 16 (36)
T ss_pred HHHHHHHHHhCcCCC
Confidence 567788889998875
No 59
>KOG2763 consensus Acyl-CoA thioesterase [Lipid transport and metabolism]
Probab=20.10 E-value=38 Score=27.13 Aligned_cols=15 Identities=20% Similarity=-0.022 Sum_probs=12.9
Q ss_pred EEEecccchhHHHhh
Q 033683 97 SFFSSFPCVVLWLLL 111 (113)
Q Consensus 97 ~~rF~~PV~v~~~~~ 111 (113)
.+.|.+||-||+.|-
T Consensus 249 ~i~F~~pVdvG~~L~ 263 (357)
T KOG2763|consen 249 DIEFQKPVDVGCVLT 263 (357)
T ss_pred hhhccCcceeeeEEE
Confidence 389999999999873
Done!