BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033684
(113 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BRL|A Chain A, Crystal Structure Of Lc8 S88e SWA
Length = 89
Score = 82.4 bits (202), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 59/91 (64%), Gaps = 2/91 (2%)
Query: 1 MLEGKPVVQETDMPDELQSHVMELAYQALDLHEVSDCQSIAHYIKQKFDEAYRPAWHCVV 60
M + K V++ DM +E+Q ++ A QAL+ + + + IA YIK++FD+ Y P WHC+V
Sbjct: 1 MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIE--KDIAAYIKKEFDKKYNPTWHCIV 58
Query: 61 GKDFGSCITHLCGSLIFFRMEMMEFLVFKDG 91
G++FGS +TH I+F + + L+FK+G
Sbjct: 59 GRNFGSYVTHETRHFIYFYLGQVAILLFKEG 89
>pdb|2PG1|A Chain A, Structural Analysis Of A Cytoplasmic Dynein Light Chain-
Intermediate Chain Complex
pdb|2PG1|B Chain B, Structural Analysis Of A Cytoplasmic Dynein Light Chain-
Intermediate Chain Complex
pdb|2PG1|C Chain C, Structural Analysis Of A Cytoplasmic Dynein Light Chain-
Intermediate Chain Complex
pdb|2PG1|D Chain D, Structural Analysis Of A Cytoplasmic Dynein Light Chain-
Intermediate Chain Complex
pdb|3DVT|A Chain A, Biochemical And Structural Characterization Of The Pak1-
Lc8 Interaction
pdb|3DVT|B Chain B, Biochemical And Structural Characterization Of The Pak1-
Lc8 Interaction
pdb|3DVT|C Chain C, Biochemical And Structural Characterization Of The Pak1-
Lc8 Interaction
pdb|3DVT|D Chain D, Biochemical And Structural Characterization Of The Pak1-
Lc8 Interaction
pdb|3DVT|E Chain E, Biochemical And Structural Characterization Of The Pak1-
Lc8 Interaction
pdb|3DVT|F Chain F, Biochemical And Structural Characterization Of The Pak1-
Lc8 Interaction
Length = 91
Score = 82.0 bits (201), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 58/91 (63%), Gaps = 2/91 (2%)
Query: 1 MLEGKPVVQETDMPDELQSHVMELAYQALDLHEVSDCQSIAHYIKQKFDEAYRPAWHCVV 60
M + K V++ DM +E+Q ++ A QAL+ + + + IA YIK++FD+ Y P WHC+V
Sbjct: 3 MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIE--KDIAAYIKKEFDKKYNPTWHCIV 60
Query: 61 GKDFGSCITHLCGSLIFFRMEMMEFLVFKDG 91
G++FGS +TH I+F + + L+FK G
Sbjct: 61 GRNFGSYVTHETRHFIYFYLGQVAILLFKSG 91
>pdb|1RHW|A Chain A, The Solution Structure Of The Ph-Induced Monomer Of
Dynein Light Chain Lc8 From Drosophila
pdb|2P2T|A Chain A, Crystal Structure Of Dynein Light Chain Lc8 Bound To
Residues 123-138 Of Intermediate Chain Ic74
pdb|3E2B|A Chain A, Crystal Structure Of Dynein Light Chain Lc8 In Complex
With A Peptide Derived From Swallow
pdb|3BRI|A Chain A, Crystal Structure Of Apo-Lc8
pdb|3FM7|E Chain E, Quaternary Structure Of Drosophila Melanogaster
IcTCTEX-1LC8; Allosteric Interactions Of Dynein Light
Chains With Dynein Intermediate Chain
pdb|3FM7|F Chain F, Quaternary Structure Of Drosophila Melanogaster
IcTCTEX-1LC8; Allosteric Interactions Of Dynein Light
Chains With Dynein Intermediate Chain
pdb|3GLW|A Chain A, Quaternary Structure Of Drosophila Melanogaster
IcTCTEX-1LC8; Allosteric Interactions Of Dynein Light
Chains With Dynein Intermediate Chain
Length = 89
Score = 82.0 bits (201), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 58/91 (63%), Gaps = 2/91 (2%)
Query: 1 MLEGKPVVQETDMPDELQSHVMELAYQALDLHEVSDCQSIAHYIKQKFDEAYRPAWHCVV 60
M + K V++ DM +E+Q ++ A QAL+ + + + IA YIK++FD+ Y P WHC+V
Sbjct: 1 MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIE--KDIAAYIKKEFDKKYNPTWHCIV 58
Query: 61 GKDFGSCITHLCGSLIFFRMEMMEFLVFKDG 91
G++FGS +TH I+F + + L+FK G
Sbjct: 59 GRNFGSYVTHETRHFIYFYLGQVAILLFKSG 89
>pdb|3RJS|A Chain A, Crystal Structure Of Dynein Light Chain 8a (Dlc8) From
Toxoplasma Gondii At 1.5 A Resolution
Length = 89
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 58/91 (63%), Gaps = 2/91 (2%)
Query: 1 MLEGKPVVQETDMPDELQSHVMELAYQALDLHEVSDCQSIAHYIKQKFDEAYRPAWHCVV 60
M + K V++ DMP++LQ ++ A QAL+ + + + IA +IK++FD + P WHCVV
Sbjct: 1 MADRKAVIKNADMPEDLQQDAIDCANQALEKYNIE--KDIAAFIKKEFDRKHNPTWHCVV 58
Query: 61 GKDFGSCITHLCGSLIFFRMEMMEFLVFKDG 91
G++FGS +TH I+F + + L+FK G
Sbjct: 59 GRNFGSYVTHETHHFIYFYIGQVAVLLFKSG 89
>pdb|3DVH|A Chain A, Lc8 Point Mutant K36p
pdb|3DVH|B Chain B, Lc8 Point Mutant K36p
pdb|3DVH|C Chain C, Lc8 Point Mutant K36p
pdb|3DVP|A Chain A, Pak1 Peptide Bound Lc8
pdb|3DVP|B Chain B, Pak1 Peptide Bound Lc8
Length = 91
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 57/91 (62%), Gaps = 2/91 (2%)
Query: 1 MLEGKPVVQETDMPDELQSHVMELAYQALDLHEVSDCQSIAHYIKQKFDEAYRPAWHCVV 60
M + K V++ DM +E+Q ++ A QAL+ + + IA YIK++FD+ Y P WHC+V
Sbjct: 3 MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIE--PDIAAYIKKEFDKKYNPTWHCIV 60
Query: 61 GKDFGSCITHLCGSLIFFRMEMMEFLVFKDG 91
G++FGS +TH I+F + + L+FK G
Sbjct: 61 GRNFGSYVTHETRHFIYFYLGQVAILLFKSG 91
>pdb|1F3C|A Chain A, Refined Solution Structure Of 8kda Dynein Light Chain
(Dlc8)
pdb|1F3C|B Chain B, Refined Solution Structure Of 8kda Dynein Light Chain
(Dlc8)
pdb|1F95|A Chain A, Solution Structure Of Dynein Light Chain 8 (Dlc8) And
Bim Peptide Complex
pdb|1F95|B Chain B, Solution Structure Of Dynein Light Chain 8 (Dlc8) And
Bim Peptide Complex
pdb|1F96|A Chain A, Solution Structure Of Dynein Light Chain 8 (Dlc8) And
Nnos Peptide Complex
pdb|1F96|B Chain B, Solution Structure Of Dynein Light Chain 8 (Dlc8) And
Nnos Peptide Complex
Length = 89
Score = 80.1 bits (196), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 58/91 (63%), Gaps = 2/91 (2%)
Query: 1 MLEGKPVVQETDMPDELQSHVMELAYQALDLHEVSDCQSIAHYIKQKFDEAYRPAWHCVV 60
M + K V++ DM +E+Q +E A QAL+ + + + IA +IK++FD+ Y P WHC+V
Sbjct: 1 MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIE--KDIAAHIKKEFDKKYNPTWHCIV 58
Query: 61 GKDFGSCITHLCGSLIFFRMEMMEFLVFKDG 91
G++FGS +TH I+F + + L+FK G
Sbjct: 59 GRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
>pdb|1PWJ|A Chain A, Structure Of The Monomeric 8-Kda Dynein Light Chain And
Mechanism Of Domain Swapped Dimer Assembly
pdb|2XQQ|A Chain A, Human Dynein Light Chain (Dynll2) In Complex With An In
Vitro Evolved Peptide (Ac-Srgtqte).
pdb|2XQQ|B Chain B, Human Dynein Light Chain (Dynll2) In Complex With An In
Vitro Evolved Peptide (Ac-Srgtqte).
pdb|2XQQ|C Chain C, Human Dynein Light Chain (Dynll2) In Complex With An In
Vitro Evolved Peptide (Ac-Srgtqte).
pdb|2XQQ|D Chain D, Human Dynein Light Chain (Dynll2) In Complex With An In
Vitro Evolved Peptide (Ac-Srgtqte)
Length = 89
Score = 79.7 bits (195), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 58/91 (63%), Gaps = 2/91 (2%)
Query: 1 MLEGKPVVQETDMPDELQSHVMELAYQALDLHEVSDCQSIAHYIKQKFDEAYRPAWHCVV 60
M + K V++ DM +++Q ++ A QA++ + + + IA YIK++FD+ Y P WHC+V
Sbjct: 1 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIE--KDIAAYIKKEFDKKYNPTWHCIV 58
Query: 61 GKDFGSCITHLCGSLIFFRMEMMEFLVFKDG 91
G++FGS +TH I+F + + L+FK G
Sbjct: 59 GRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
>pdb|3P8M|A Chain A, Human Dynein Light Chain (Dynll2) In Complex With An In
Vitro Evolved Peptide Dimerized By Leucine Zipper
pdb|3P8M|B Chain B, Human Dynein Light Chain (Dynll2) In Complex With An In
Vitro Evolved Peptide Dimerized By Leucine Zipper
Length = 92
Score = 79.7 bits (195), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 58/91 (63%), Gaps = 2/91 (2%)
Query: 1 MLEGKPVVQETDMPDELQSHVMELAYQALDLHEVSDCQSIAHYIKQKFDEAYRPAWHCVV 60
M + K V++ DM +++Q ++ A QA++ + + + IA YIK++FD+ Y P WHC+V
Sbjct: 4 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIE--KDIAAYIKKEFDKKYNPTWHCIV 61
Query: 61 GKDFGSCITHLCGSLIFFRMEMMEFLVFKDG 91
G++FGS +TH I+F + + L+FK G
Sbjct: 62 GRNFGSYVTHETKHFIYFYLGQVAILLFKSG 92
>pdb|1RE6|A Chain A, Localisation Of Dynein Light Chains 1 And 2 And Their
Pro- Apoptotic Ligands
pdb|1RE6|B Chain B, Localisation Of Dynein Light Chains 1 And 2 And Their
Pro- Apoptotic Ligands
Length = 94
Score = 79.3 bits (194), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 58/91 (63%), Gaps = 2/91 (2%)
Query: 1 MLEGKPVVQETDMPDELQSHVMELAYQALDLHEVSDCQSIAHYIKQKFDEAYRPAWHCVV 60
M + K V++ DM +++Q ++ A QA++ + + + IA YIK++FD+ Y P WHC+V
Sbjct: 6 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIE--KDIAAYIKKEFDKKYNPTWHCIV 63
Query: 61 GKDFGSCITHLCGSLIFFRMEMMEFLVFKDG 91
G++FGS +TH I+F + + L+FK G
Sbjct: 64 GRNFGSYVTHETKHFIYFYLGQVAILLFKSG 94
>pdb|1CMI|A Chain A, Structure Of The Human PinLC8 DIMER WITH A BOUND PEPTIDE
pdb|1CMI|B Chain B, Structure Of The Human PinLC8 DIMER WITH A BOUND PEPTIDE
Length = 85
Score = 79.3 bits (194), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 56/87 (64%), Gaps = 2/87 (2%)
Query: 5 KPVVQETDMPDELQSHVMELAYQALDLHEVSDCQSIAHYIKQKFDEAYRPAWHCVVGKDF 64
K V++ DM +E+Q +E A QAL+ + + + IA +IK++FD+ Y P WHC+VG++F
Sbjct: 1 KAVIKNADMSEEMQQDSVECATQALEKYNIE--KDIAAHIKKEFDKKYNPTWHCIVGRNF 58
Query: 65 GSCITHLCGSLIFFRMEMMEFLVFKDG 91
GS +TH I+F + + L+FK G
Sbjct: 59 GSYVTHETKHFIYFYLGQVAILLFKSG 85
>pdb|1YO3|A Chain A, 1.65 Angstrom Structure Of The Dynein Light Chain 1 From
Plasmodium Falciparum
pdb|1YO3|B Chain B, 1.65 Angstrom Structure Of The Dynein Light Chain 1 From
Plasmodium Falciparum
pdb|1YO3|C Chain C, 1.65 Angstrom Structure Of The Dynein Light Chain 1 From
Plasmodium Falciparum
Length = 102
Score = 76.6 bits (187), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 54/85 (63%), Gaps = 2/85 (2%)
Query: 7 VVQETDMPDELQSHVMELAYQALDLHEVSDCQSIAHYIKQKFDEAYRPAWHCVVGKDFGS 66
VV+ DM +E+Q ++ A QAL + V + IA +IK++FD Y P WHCVVG++FGS
Sbjct: 20 VVKNVDMTEEMQIDAIDCANQALQKYNVE--KDIAAHIKKEFDRKYDPTWHCVVGRNFGS 77
Query: 67 CITHLCGSLIFFRMEMMEFLVFKDG 91
+TH + I+F + + L+FK G
Sbjct: 78 YVTHETKNFIYFYIGQVAILLFKSG 102
>pdb|1PWK|A Chain A, Structure Of The Monomeric 8-Kda Dynein Light Chain And
Mechanism Of Domain Swapped Dimer Assembly
Length = 91
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 58/93 (62%), Gaps = 4/93 (4%)
Query: 1 MLEGKPVVQETDMPDELQSHVMELAYQALDLHEVSDCQSIAHYIKQKFDEAYRPAWHCVV 60
M + K V++ DM +++Q ++ A QA++ + + + IA YIK++FD+ Y P WHC+V
Sbjct: 1 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIE--KDIAAYIKKEFDKKYNPTWHCIV 58
Query: 61 GK--DFGSCITHLCGSLIFFRMEMMEFLVFKDG 91
G+ +FGS +TH I+F + + L+FK G
Sbjct: 59 GRSGNFGSYVTHETKHFIYFYLGQVAILLFKSG 91
>pdb|4DS1|A Chain A, The Structure Of A Yeast Dyn2-Nup159 Complex And The
Molecular Basis For The Dynein Light Chain - Nuclear
Pore Interaction
pdb|4DS1|C Chain C, The Structure Of A Yeast Dyn2-Nup159 Complex And The
Molecular Basis For The Dynein Light Chain - Nuclear
Pore Interaction
Length = 97
Score = 70.5 bits (171), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 54/84 (64%), Gaps = 2/84 (2%)
Query: 6 PVVQETDMPDELQSHVMELAYQALDLHEVSDCQSIAHYIKQKFDEAYRPAWHCVVGKDFG 65
P+V+ +D+ D+L+ ++ ++ ALD +++ + IA +K++ D Y WH +VGK+FG
Sbjct: 14 PIVKASDITDKLKEDILTISKDALDKYQLE--RDIAGTVKKQLDVKYGNTWHVIVGKNFG 71
Query: 66 SCITHLCGSLIFFRMEMMEFLVFK 89
S +TH G ++F + + FLVFK
Sbjct: 72 SYVTHEKGHFVYFYIGPLAFLVFK 95
>pdb|2GEJ|A Chain A, Crystal Structure Of Phosphatidylinositol
Mannosyltransferase (Pima) From Mycobacterium Smegmatis
In Complex With Gdp-Man
pdb|2GEK|A Chain A, Crystal Structure Of Phosphatidylinositol
Mannosyltransferase (Pima) From Mycobacterium Smegmatis
In Complex With Gdp
Length = 406
Score = 25.4 bits (54), Expect = 8.9, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 12 DMPDELQSHVMELAYQALDL-HEVSDCQSIAHYIK 45
D+P +QSHV++LA D HEVS + ++K
Sbjct: 32 DVPGGVQSHVLQLAEVLRDAGHEVSVLAPASPHVK 66
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,278,224
Number of Sequences: 62578
Number of extensions: 119374
Number of successful extensions: 221
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 194
Number of HSP's gapped (non-prelim): 15
length of query: 113
length of database: 14,973,337
effective HSP length: 77
effective length of query: 36
effective length of database: 10,154,831
effective search space: 365573916
effective search space used: 365573916
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)