Query 033684
Match_columns 113
No_of_seqs 116 out of 540
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 05:06:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033684.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033684hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3430 Dynein light chain typ 100.0 3.2E-42 6.9E-47 228.7 11.7 90 1-91 1-90 (90)
2 PTZ00059 dynein light chain; P 100.0 7E-41 1.5E-45 224.0 12.2 89 1-91 2-90 (90)
3 PLN03058 dynein light chain ty 100.0 2.2E-39 4.7E-44 229.0 12.5 92 3-94 33-125 (128)
4 PF01221 Dynein_light: Dynein 100.0 2.9E-39 6.2E-44 214.9 9.5 89 1-91 1-89 (89)
5 PF04155 Ground-like: Ground-l 97.1 0.0071 1.5E-07 38.7 8.4 54 36-89 23-76 (76)
6 PF05075 DUF684: Protein of un 89.1 3.8 8.2E-05 33.2 8.7 57 37-93 188-254 (345)
7 PF15650 Tox-REase-9: Restrict 71.7 3.2 7E-05 27.8 1.9 18 44-61 70-87 (89)
8 PF12006 DUF3500: Protein of u 65.5 40 0.00087 27.1 7.4 51 8-62 216-267 (313)
9 PF10703 MoaF: Molybdenum cofa 61.7 14 0.0003 29.3 4.1 37 55-94 182-219 (265)
10 TIGR00237 xseA exodeoxyribonuc 61.6 17 0.00038 30.2 4.8 49 38-92 3-57 (432)
11 PF13742 tRNA_anti_2: OB-fold 58.3 34 0.00074 22.5 5.0 52 38-93 5-62 (99)
12 KOG2451 Aldehyde dehydrogenase 57.8 22 0.00047 30.3 4.7 46 4-49 49-94 (503)
13 PF12652 CotJB: CotJB protein; 55.1 8.2 0.00018 25.1 1.5 17 39-55 40-56 (78)
14 COG1570 XseA Exonuclease VII, 53.6 23 0.00049 30.1 4.2 51 38-92 9-63 (440)
15 TIGR02084 leud 3-isopropylmala 53.3 13 0.00028 27.1 2.4 33 37-69 26-62 (156)
16 cd03538 Rieske_RO_Alpha_AntDO 49.2 33 0.00071 24.2 4.0 46 42-91 9-54 (146)
17 PRK00286 xseA exodeoxyribonucl 48.8 40 0.00086 27.8 4.9 52 37-92 8-63 (438)
18 cd03472 Rieske_RO_Alpha_BPDO_l 47.5 39 0.00084 23.3 4.1 41 48-92 1-41 (128)
19 PF14900 DUF4493: Domain of un 46.4 47 0.001 25.0 4.7 37 46-82 119-160 (235)
20 PF08776 VASP_tetra: VASP tetr 45.8 54 0.0012 18.8 3.7 32 15-50 6-37 (40)
21 PF06150 ChaB: ChaB; InterPro 45.6 68 0.0015 19.4 5.1 43 11-57 7-54 (57)
22 PRK13007 succinyl-diaminopimel 45.2 1E+02 0.0022 23.9 6.5 39 13-51 1-40 (352)
23 PRK14023 homoaconitate hydrata 45.0 29 0.00064 25.4 3.3 59 4-69 2-64 (166)
24 PHA02053 hypothetical protein 40.6 8.1 0.00018 26.6 -0.3 20 47-67 72-91 (115)
25 cd03545 Rieske_RO_Alpha_OHBDO_ 40.6 58 0.0013 23.1 4.2 46 42-91 11-57 (150)
26 TIGR03849 arch_ComA phosphosul 37.0 84 0.0018 24.5 4.8 52 10-64 94-158 (237)
27 PF06457 Ectatomin: Ectatomin; 36.4 57 0.0012 17.8 2.7 13 38-50 22-34 (34)
28 PF08006 DUF1700: Protein of u 35.7 96 0.0021 22.3 4.8 39 11-49 15-65 (181)
29 PF07742 BTG: BTG family; Int 34.6 32 0.0007 23.8 2.0 20 38-57 28-47 (118)
30 PF11858 DUF3378: Domain of un 34.6 46 0.001 21.5 2.6 21 72-92 29-49 (81)
31 cd01579 AcnA_Bact_Swivel Bacte 34.4 27 0.00058 24.4 1.6 16 52-67 46-61 (121)
32 PF12362 DUF3646: DNA polymera 33.6 50 0.0011 22.9 2.8 29 37-65 48-76 (117)
33 PF10069 DICT: Sensory domain 28.6 69 0.0015 22.1 2.9 21 51-71 106-127 (129)
34 PF12550 GCR1_C: Transcription 27.9 18 0.00039 23.1 -0.2 12 46-57 29-40 (81)
35 KOG2130 Phosphatidylserine-spe 27.9 50 0.0011 27.4 2.3 18 53-70 277-294 (407)
36 cd01674 Homoaconitase_Swivel H 27.6 63 0.0014 23.0 2.5 33 37-70 24-61 (129)
37 PF08015 Pheromone: Fungal mat 26.3 37 0.00081 20.9 1.1 14 47-60 54-69 (69)
38 cd01578 AcnA_Mitochon_Swivel M 24.3 43 0.00094 24.4 1.2 17 53-69 68-84 (149)
39 TIGR03228 anthran_1_2_A anthra 24.2 1.1E+02 0.0024 25.8 3.7 47 43-93 26-72 (438)
40 TIGR02087 LEUD_arch 3-isopropy 24.0 62 0.0013 23.5 2.0 31 37-67 26-60 (154)
41 PF01743 PolyA_pol: Poly A pol 23.2 2.4E+02 0.0051 19.1 4.8 37 41-79 28-64 (126)
42 COG1352 CheR Methylase of chem 23.0 78 0.0017 24.9 2.5 50 4-59 128-179 (268)
43 PF02881 SRP54_N: SRP54-type p 23.0 1.2E+02 0.0027 18.3 3.0 38 10-47 36-74 (75)
44 PF13774 Longin: Regulated-SNA 22.9 2E+02 0.0042 17.8 4.5 41 67-110 16-58 (83)
45 PF08908 DUF1852: Domain of un 22.5 47 0.001 26.8 1.2 49 47-105 98-147 (322)
46 PF06884 DUF1264: Protein of u 22.4 60 0.0013 24.2 1.7 20 40-59 98-117 (171)
47 PRK00466 acetyl-lysine deacety 22.2 2.5E+02 0.0054 21.9 5.3 43 15-58 6-49 (346)
48 TIGR01916 F420_cofE F420-0:gam 22.2 1.1E+02 0.0024 24.0 3.2 33 36-68 123-155 (243)
49 PF08958 DUF1871: Domain of un 22.2 87 0.0019 20.3 2.2 28 25-54 27-54 (79)
50 PF00352 TBP: Transcription fa 22.1 1E+02 0.0022 19.6 2.6 25 68-92 31-59 (86)
51 PRK06489 hypothetical protein; 21.9 50 0.0011 26.0 1.2 32 38-69 136-168 (360)
52 smart00099 btg1 tob/btg1 famil 21.7 1.5E+02 0.0032 20.4 3.4 38 20-57 7-47 (108)
53 PF06925 MGDG_synth: Monogalac 21.6 91 0.002 21.9 2.5 26 38-63 2-27 (169)
54 PF06840 DUF1241: Protein of u 21.5 57 0.0012 23.9 1.4 14 37-50 122-135 (154)
55 PF10302 DUF2407: DUF2407 ubiq 21.4 45 0.00098 22.3 0.8 7 56-62 90-96 (97)
56 PRK13293 F420-0--gamma-glutamy 20.8 1.2E+02 0.0026 23.8 3.1 32 36-67 124-155 (245)
57 KOG4194 Membrane glycoprotein 20.8 59 0.0013 29.4 1.6 24 53-76 586-609 (873)
No 1
>KOG3430 consensus Dynein light chain type 1 [Cytoskeleton]
Probab=100.00 E-value=3.2e-42 Score=228.68 Aligned_cols=90 Identities=48% Similarity=0.884 Sum_probs=87.3
Q ss_pred CCCCCceEEeCCCCHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhccccCCCceEEEEeCCCceeEEecCCcEEEEec
Q 033684 1 MLEGKPVVQETDMPDELQSHVMELAYQALDLHEVSDCQSIAHYIKQKFDEAYRPAWHCVVGKDFGSCITHLCGSLIFFRM 80 (113)
Q Consensus 1 M~~~~~~I~~sDM~~emq~~ai~~a~~al~~~~~~~~kdiA~~IK~~lD~kyg~~WHcIVG~~Fgs~vThe~~~~i~F~i 80 (113)
|++++++|+.+|||++||++|+++|.+|+++|+. ++++||..||++||++||++||||||+||||+|||++++||||++
T Consensus 1 ~~~~~~~vk~tDM~~~mq~~a~~~a~~al~~f~~-~~k~iA~~iKkefDkkyG~~WhcivG~~FGs~vThe~g~Fiyf~~ 79 (90)
T KOG3430|consen 1 MLERKAVVKATDMPEEMQQEAIELARQALEKFNV-IEKDIAAFIKKEFDKKYGPTWHCIVGRNFGSYVTHETGHFIYFYL 79 (90)
T ss_pred CCCccceEecCCCChHHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHhhhcCCccEEEEcCCcceEEEeecCcEEEEEe
Confidence 7889999999999999999999999999999996 479999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeeC
Q 033684 81 EMMEFLVFKDG 91 (113)
Q Consensus 81 ~~~~~LlfKt~ 91 (113)
|.++|||||+.
T Consensus 80 g~l~illfK~~ 90 (90)
T KOG3430|consen 80 GVLAILLFKCA 90 (90)
T ss_pred ceEEEEEEecC
Confidence 99999999984
No 2
>PTZ00059 dynein light chain; Provisional
Probab=100.00 E-value=7e-41 Score=224.01 Aligned_cols=89 Identities=40% Similarity=0.833 Sum_probs=86.4
Q ss_pred CCCCCceEEeCCCCHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhccccCCCceEEEEeCCCceeEEecCCcEEEEec
Q 033684 1 MLEGKPVVQETDMPDELQSHVMELAYQALDLHEVSDCQSIAHYIKQKFDEAYRPAWHCVVGKDFGSCITHLCGSLIFFRM 80 (113)
Q Consensus 1 M~~~~~~I~~sDM~~emq~~ai~~a~~al~~~~~~~~kdiA~~IK~~lD~kyg~~WHcIVG~~Fgs~vThe~~~~i~F~i 80 (113)
|++++++|+.+|||++||++|++++.+|+++|+. +++||++||++||++|||+||||||++|||+|||++++||||++
T Consensus 2 m~~~~~~i~~~dM~~emq~~a~~~~~~Al~~~~~--~kdiA~~IK~~fD~~yg~~WhciVG~~Fgs~vthe~~~~i~F~~ 79 (90)
T PTZ00059 2 MSDRKAVVKNADMSEDMQQDAIDCANQALEKFNI--EKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYL 79 (90)
T ss_pred CCCCccEEEECCCCHHHHHHHHHHHHHHHHHcCc--hHHHHHHHHHHHHhhcCCCCEEEEecCeeEEEEEeCCcEEEEEE
Confidence 7888999999999999999999999999999986 59999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeeC
Q 033684 81 EMMEFLVFKDG 91 (113)
Q Consensus 81 ~~~~~LlfKt~ 91 (113)
|+++|||||++
T Consensus 80 ~~~~vLlfK~~ 90 (90)
T PTZ00059 80 GQVAILLFKSG 90 (90)
T ss_pred CCEEEEEEecC
Confidence 99999999985
No 3
>PLN03058 dynein light chain type 1 family protein; Provisional
Probab=100.00 E-value=2.2e-39 Score=229.01 Aligned_cols=92 Identities=37% Similarity=0.657 Sum_probs=86.9
Q ss_pred CCCceEEeCCCCHHHHHHHHHHHHHHHHhcCC-CChHHHHHHHHHhccccCCCceEEEEeCCCceeEEecCCcEEEEecC
Q 033684 3 EGKPVVQETDMPDELQSHVMELAYQALDLHEV-SDCQSIAHYIKQKFDEAYRPAWHCVVGKDFGSCITHLCGSLIFFRME 81 (113)
Q Consensus 3 ~~~~~I~~sDM~~emq~~ai~~a~~al~~~~~-~~~kdiA~~IK~~lD~kyg~~WHcIVG~~Fgs~vThe~~~~i~F~i~ 81 (113)
+.+++|+.+|||++||++|+++|.+|+++++. .++++||++||++||++|||+||||||++|||+|||++++||||++|
T Consensus 33 ~~dv~Ik~sDM~~emQ~~ave~a~~Al~k~~~~~~ekdIA~~IKk~fDkkYG~tWHCIVGk~FGs~VTHe~~~fIyF~ig 112 (128)
T PLN03058 33 ELNVRVRASDMPLVLQNRAFSCARDILDAMPGKLDSKRLALALKKEFDSAYGPAWHCIVGTSFGSYVTHSTGGFLYFSID 112 (128)
T ss_pred CCCCEEEECCCCHHHHHHHHHHHHHHHHHccccCCHHHHHHHHHHHHhhhhCCceEEEECCcEEEEEEEcCCcEEEEEEC
Confidence 46799999999999999999999999999863 34799999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeeCCCC
Q 033684 82 MMEFLVFKDGKDC 94 (113)
Q Consensus 82 ~~~~LlfKt~~~~ 94 (113)
+++||||||+.+|
T Consensus 113 ~~aiLLfKt~~~~ 125 (128)
T PLN03058 113 KVYILLFKTAVEP 125 (128)
T ss_pred CEEEEEEeccCcc
Confidence 9999999999883
No 4
>PF01221 Dynein_light: Dynein light chain type 1 ; InterPro: IPR001372 Dynein is a multisubunit microtubule-dependent motor enzyme that acts as the force generating protein of eukaryotic cilia and flagella. The cytoplasmic isoform of dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. Dynein is composed of a number of ATP-binding large subunits (see IPR004273 from INTERPRO), intermediate size subunits and small subunits. Among the small subunits, there is a family of highly conserved proteins which make up this family [, ]. Both type 1 (DLC1) and 2 (DLC2) dynein light chains have a similar two-layer alpha-beta core structure consisting of beta-alpha(2)-beta-X-beta(2) [, ].; GO: 0007017 microtubule-based process, 0005875 microtubule associated complex; PDB: 1F95_A 1F96_A 1F3C_A 3P8M_B 2XQQ_C 1RE6_A 1CMI_A 1PWK_A 1PWJ_A 4DS1_C ....
Probab=100.00 E-value=2.9e-39 Score=214.95 Aligned_cols=89 Identities=44% Similarity=0.848 Sum_probs=84.3
Q ss_pred CCCCCceEEeCCCCHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhccccCCCceEEEEeCCCceeEEecCCcEEEEec
Q 033684 1 MLEGKPVVQETDMPDELQSHVMELAYQALDLHEVSDCQSIAHYIKQKFDEAYRPAWHCVVGKDFGSCITHLCGSLIFFRM 80 (113)
Q Consensus 1 M~~~~~~I~~sDM~~emq~~ai~~a~~al~~~~~~~~kdiA~~IK~~lD~kyg~~WHcIVG~~Fgs~vThe~~~~i~F~i 80 (113)
|++++++|+.+|||++||++|+++|.+|+++++. ++++|++||++||++|||+||||||++|||++||++++++||++
T Consensus 1 m~~~~~~i~~~dM~~~~~~~~~~~~~~a~~~~~~--~~eiA~~iK~~lD~~yG~~Wh~IVG~~Fg~~~th~~~~~~~f~~ 78 (89)
T PF01221_consen 1 MSENKIVIKSSDMPEEMQEEAIELAKEALKKYQD--EKEIAEFIKQELDKKYGPTWHCIVGKSFGSSVTHEPGTFLYFKI 78 (89)
T ss_dssp SGSCSEEEEEEES-HHHHHHHHHHHHHHHHHCSS--HHHHHHHHHHHHHHHHSS-EEEEEESEEEEEEEEETTEEEEEEE
T ss_pred CCCCccEEEECCCCHHHHHHHHHHHHHHHHHCCc--HHHHHHHHHHHHhcccCCceEEEECCcEEEEEEEcCCcEEEEEE
Confidence 8999999999999999999999999999999985 69999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeeC
Q 033684 81 EMMEFLVFKDG 91 (113)
Q Consensus 81 ~~~~~LlfKt~ 91 (113)
++++||||||+
T Consensus 79 ~~~~~li~kt~ 89 (89)
T PF01221_consen 79 GNIAFLIFKTQ 89 (89)
T ss_dssp TTEEEEEEEE-
T ss_pred CCEEEEEEecC
Confidence 99999999985
No 5
>PF04155 Ground-like: Ground-like domain; InterPro: IPR007284 This group of proteins contain one or more copies of the ground-like domain, which are specific to Caenorhabditis elegans and Caenorhabditis briggsae. It has been proposed that the ground-like domain containing proteins may bind and modulate the activity of Patched-like membrane molecules, reminiscent of the modulating activities of neuropeptides [].
Probab=97.10 E-value=0.0071 Score=38.71 Aligned_cols=54 Identities=11% Similarity=0.070 Sum_probs=45.0
Q ss_pred ChHHHHHHHHHhccccCCCceEEEEeCCCceeEEecCCcEEEEecCCeEEEEEe
Q 033684 36 DCQSIAHYIKQKFDEAYRPAWHCVVGKDFGSCITHLCGSLIFFRMEMMEFLVFK 89 (113)
Q Consensus 36 ~~kdiA~~IK~~lD~kyg~~WHcIVG~~Fgs~vThe~~~~i~F~i~~~~~LlfK 89 (113)
+...+++.|.+.+.++||+.+-||++++-=++.+|-...|--...+++..++|+
T Consensus 23 ~~~~s~~~Iq~~~e~~f~~~f~vIcs~~~Fsy~~~~~~~~C~~~~~g~~c~af~ 76 (76)
T PF04155_consen 23 NLSISKRAIQKAAEKRFGGSFEVICSEGDFSYSTHTDDLYCKVEKNGVTCLAFA 76 (76)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEeCCCceeEEecccceeeeeeCCEEEEEEC
Confidence 368899999999999999999999999433444555577888899999999985
No 6
>PF05075 DUF684: Protein of unknown function (DUF684); InterPro: IPR007767 This family contains uncharacterised proteins from Caenorhabditis elegans.
Probab=89.15 E-value=3.8 Score=33.15 Aligned_cols=57 Identities=16% Similarity=0.188 Sum_probs=39.5
Q ss_pred hHHHHHHHHHhccccCCC-ceEEEEeC------C--CceeEEecCCcEEE-EecCCeEEEEEeeCCC
Q 033684 37 CQSIAHYIKQKFDEAYRP-AWHCVVGK------D--FGSCITHLCGSLIF-FRMEMMEFLVFKDGKD 93 (113)
Q Consensus 37 ~kdiA~~IK~~lD~kyg~-~WHcIVG~------~--Fgs~vThe~~~~i~-F~i~~~~~LlfKt~~~ 93 (113)
..+.|..||+.||+-.-. .+-+||-. + |.....+....+|. |.-|+..++||||-..
T Consensus 188 n~eKAd~Ik~~Le~ilTnDsFYIiVfd~~~~~~~~~~y~~~~~~~dq~I~s~~rGgcNv~VYRS~~~ 254 (345)
T PF05075_consen 188 NEEKADEIKKKLEKILTNDSFYIIVFDDCSGYDNHYYYGFYDNNEDQYIESFNRGGCNVFVYRSKKA 254 (345)
T ss_pred hHHHHHHHHHHHHhhCCCCcEEEEEecccccCCccceeeeccCcccCEEEEEeCCCeEEEEEeeCCC
Confidence 478999999999996543 57888822 1 11222345555665 7789999999999444
No 7
>PF15650 Tox-REase-9: Restriction endonuclease fold toxin 9
Probab=71.74 E-value=3.2 Score=27.77 Aligned_cols=18 Identities=22% Similarity=0.566 Sum_probs=15.3
Q ss_pred HHHhccccCCCceEEEEe
Q 033684 44 IKQKFDEAYRPAWHCVVG 61 (113)
Q Consensus 44 IK~~lD~kyg~~WHcIVG 61 (113)
-|++|...||.+|.|||-
T Consensus 70 Y~~el~~~~G~~W~~~l~ 87 (89)
T PF15650_consen 70 YKQELEKIYGGGWKTRLE 87 (89)
T ss_pred HHHHhcCccCCCeeEEee
Confidence 357899999999999973
No 8
>PF12006 DUF3500: Protein of unknown function (DUF3500); InterPro: IPR021889 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 335 to 438 amino acids in length. This protein has a conserved GHH sequence motif. This protein has two completely conserved G residues that may be functionally important.
Probab=65.52 E-value=40 Score=27.06 Aligned_cols=51 Identities=10% Similarity=0.103 Sum_probs=33.2
Q ss_pred EEeCCCCHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhc-cccCCCceEEEEeC
Q 033684 8 VQETDMPDELQSHVMELAYQALDLHEVSDCQSIAHYIKQKF-DEAYRPAWHCVVGK 62 (113)
Q Consensus 8 I~~sDM~~emq~~ai~~a~~al~~~~~~~~kdiA~~IK~~l-D~kyg~~WHcIVG~ 62 (113)
|..++|+.+.|+.+..++..-+..++. +.|+..-..+ ..-++.+|-+-+|.
T Consensus 216 l~~s~Lt~~Qq~ll~~li~~y~~~~~~----~~a~~~~~~i~~~~ld~t~faW~G~ 267 (313)
T PF12006_consen 216 LAVSELTADQQELLLALIKEYLGRLPE----EDAAERMAEIEEAGLDETYFAWAGG 267 (313)
T ss_pred cChhhCCHHHHHHHHHHHHHHHHhCCH----HHHHHHHHHHHhccccceEEEEecC
Confidence 678999999999999999998888764 3333322222 33334445555553
No 9
>PF10703 MoaF: Molybdenum cofactor biosynthesis protein F; InterPro: IPR024724 Molybdenum cofactor biosynthesis protein F (MoaF) is essential for the production of the monoamine-inducible 30kDa protein in Klebsiella []. It is necessary for reconstituting organoautotrophic growth in Ralstonia eutropha []. MoaF is conserved in proteobacteria and some lower eukaryotes. The operon regulating the Moa genes is responsible for molybdenum cofactor biosynthesis.
Probab=61.74 E-value=14 Score=29.31 Aligned_cols=37 Identities=14% Similarity=0.427 Sum_probs=26.1
Q ss_pred ceEEEEeCCCceeEEecCCcEEEEecC-CeEEEEEeeCCCC
Q 033684 55 AWHCVVGKDFGSCITHLCGSLIFFRME-MMEFLVFKDGKDC 94 (113)
Q Consensus 55 ~WHcIVG~~Fgs~vThe~~~~i~F~i~-~~~~LlfKt~~~~ 94 (113)
+|||+.|..=|-. +....-+|+++ ++.++.|+=.--+
T Consensus 182 ~W~CL~G~e~Gla---D~D~c~~~Ki~d~lYlf~WrEkiiP 219 (265)
T PF10703_consen 182 AWQCLSGVEKGLA---DTDRCHYYKIADNLYLFTWREKIIP 219 (265)
T ss_pred EEEEeeccccCCC---CccceEEEEecCCEEEEEEEecccc
Confidence 7999999865532 35677778874 7788888755443
No 10
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=61.56 E-value=17 Score=30.24 Aligned_cols=49 Identities=14% Similarity=0.488 Sum_probs=37.0
Q ss_pred HHHHHHHHHhccccCCCceEEEEeC--CCceeEEecCCcEEEEecC----CeEEEEEeeCC
Q 033684 38 QSIAHYIKQKFDEAYRPAWHCVVGK--DFGSCITHLCGSLIFFRME----MMEFLVFKDGK 92 (113)
Q Consensus 38 kdiA~~IK~~lD~kyg~~WHcIVG~--~Fgs~vThe~~~~i~F~i~----~~~~LlfKt~~ 92 (113)
.++..+||..|+..|+..| |.|+ ||- +-....+||.+. .+...+|++..
T Consensus 3 sel~~~ik~~le~~~~~v~--V~GEisn~~----~~~sGH~YFtLkD~~a~i~~vmf~~~~ 57 (432)
T TIGR00237 3 SELNAQIKALLEATFLQVW--IQGEISNFT----QPVSGHWYFTLKDENAQVRCVMFRGNN 57 (432)
T ss_pred HHHHHHHHHHHHhhCCcEE--EEEEecCCe----eCCCceEEEEEEcCCcEEEEEEEcChh
Confidence 5788999999999898777 5676 443 224457899983 67889999864
No 11
>PF13742 tRNA_anti_2: OB-fold nucleic acid binding domain
Probab=58.31 E-value=34 Score=22.54 Aligned_cols=52 Identities=17% Similarity=0.475 Sum_probs=37.1
Q ss_pred HHHHHHHHHhcccc--CCCceEEEEeCCCceeEEecCCcEEEEecC----CeEEEEEeeCCC
Q 033684 38 QSIAHYIKQKFDEA--YRPAWHCVVGKDFGSCITHLCGSLIFFRME----MMEFLVFKDGKD 93 (113)
Q Consensus 38 kdiA~~IK~~lD~k--yg~~WHcIVG~~Fgs~vThe~~~~i~F~i~----~~~~LlfKt~~~ 93 (113)
.++.++||..++.. ++..| |.|. =|.++.-.+..+||.+- .+...+|++...
T Consensus 5 s~l~~~ik~~le~~~~~~~vw--V~GE--Is~~~~~~~gh~YftLkD~~a~i~~~~~~~~~~ 62 (99)
T PF13742_consen 5 SELNNYIKDLLERDPPLPNVW--VEGE--ISNLKRHSSGHVYFTLKDEEASISCVIFRSRAR 62 (99)
T ss_pred HHHHHHHHHHHhcCCCcCCEE--EEEE--EeecEECCCceEEEEEEcCCcEEEEEEEHHHHh
Confidence 57899999999998 45667 5666 13333336778899983 567888887643
No 12
>KOG2451 consensus Aldehyde dehydrogenase [Energy production and conversion]
Probab=57.82 E-value=22 Score=30.26 Aligned_cols=46 Identities=15% Similarity=0.269 Sum_probs=36.0
Q ss_pred CCceEEeCCCCHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhcc
Q 033684 4 GKPVVQETDMPDELQSHVMELAYQALDLHEVSDCQSIAHYIKQKFD 49 (113)
Q Consensus 4 ~~~~I~~sDM~~emq~~ai~~a~~al~~~~~~~~kdiA~~IK~~lD 49 (113)
+.+.=+..||+-+.-+++++.|.+|++.|.....++=.+.|++|.|
T Consensus 49 geii~~V~~~~V~e~~kAI~aA~EaF~s~~~~takeRs~lLrkwy~ 94 (503)
T KOG2451|consen 49 GEIIGKVADMTVEEAEKAIDAAYEAFKSYRNLTAKERSALLRKWYE 94 (503)
T ss_pred cchhhcccCCcHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Confidence 4455578999999999999999999999876545566666666555
No 13
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=55.09 E-value=8.2 Score=25.06 Aligned_cols=17 Identities=18% Similarity=0.526 Sum_probs=13.5
Q ss_pred HHHHHHHHhccccCCCc
Q 033684 39 SIAHYIKQKFDEAYRPA 55 (113)
Q Consensus 39 diA~~IK~~lD~kyg~~ 55 (113)
..-+.+++++.++|||.
T Consensus 40 ~~~~~l~~~Ye~~yGPL 56 (78)
T PF12652_consen 40 KQRKQLKKEYEKRYGPL 56 (78)
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 34466889999999995
No 14
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=53.56 E-value=23 Score=30.13 Aligned_cols=51 Identities=22% Similarity=0.501 Sum_probs=40.1
Q ss_pred HHHHHHHHHhccccCCCceEEEEeCCCceeEEecCCcEEEEecC----CeEEEEEeeCC
Q 033684 38 QSIAHYIKQKFDEAYRPAWHCVVGKDFGSCITHLCGSLIFFRME----MMEFLVFKDGK 92 (113)
Q Consensus 38 kdiA~~IK~~lD~kyg~~WHcIVG~~Fgs~vThe~~~~i~F~i~----~~~~LlfKt~~ 92 (113)
.++..+||..||..+|..| |-|. =|.+|+-+....||.+. ++...+|+...
T Consensus 9 Seln~~ik~llE~~~~~V~--v~GE--ISn~t~~~sgH~YFtLKD~~A~i~c~mf~~~~ 63 (440)
T COG1570 9 SELNDYIKRLLERDLGQVW--VRGE--ISNFTRPASGHLYFTLKDERAQIRCVMFKGNN 63 (440)
T ss_pred HHHHHHHHHHHHhcCCeEE--EEEE--ecCCccCCCccEEEEEccCCceEEEEEEcCcc
Confidence 6899999999999999888 5676 45667555558999984 56788888764
No 15
>TIGR02084 leud 3-isopropylmalate dehydratase, small subunit. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. The members of the seed for this model are those sequences which are gene clustered with other genes involved in leucine biosynthesis and include some archaea.
Probab=53.34 E-value=13 Score=27.14 Aligned_cols=33 Identities=18% Similarity=0.278 Sum_probs=22.4
Q ss_pred hHHHHHHHHHhcc----ccCCCceEEEEeCCCceeEE
Q 033684 37 CQSIAHYIKQKFD----EAYRPAWHCVVGKDFGSCIT 69 (113)
Q Consensus 37 ~kdiA~~IK~~lD----~kyg~~WHcIVG~~Fgs~vT 69 (113)
..++++++-..+| +++.+..-+|.|+|||+=-|
T Consensus 26 ~~~l~~~~f~~~~p~f~~~~~~g~iiVaG~NFG~GSS 62 (156)
T TIGR02084 26 PKELAKHCMEDLDKDFVKKVKEGDIIVAGENFGCGSS 62 (156)
T ss_pred HHHHHhhhhccCChhHHhhcCCCCEEEccCcccCCCc
Confidence 5677777776666 44556666777889996433
No 16
>cd03538 Rieske_RO_Alpha_AntDO Rieske non-heme iron oxygenase (RO) family, Anthranilate 1,2-dioxygenase (AntDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. AntDO converts anthranilate to catechol, a naturally occurring compound formed through tryptophan degradation and an important intermediate in the metabolism of many N-heterocyclic compounds such as indole, o-nitrobenzoate, carbazole, and quinaldine.
Probab=49.18 E-value=33 Score=24.22 Aligned_cols=46 Identities=15% Similarity=0.221 Sum_probs=32.5
Q ss_pred HHHHHhccccCCCceEEEEeCCCceeEEecCCcEEEEecCCeEEEEEeeC
Q 033684 42 HYIKQKFDEAYRPAWHCVVGKDFGSCITHLCGSLIFFRMEMMEFLVFKDG 91 (113)
Q Consensus 42 ~~IK~~lD~kyg~~WHcIVG~~Fgs~vThe~~~~i~F~i~~~~~LlfKt~ 91 (113)
+....+++.-|...|+.|.-. +-+ -+++.++-+.+++..++|+|..
T Consensus 9 ~~~~~e~~~i~~~~W~~v~~~---~el-p~~G~~~~~~i~g~~i~v~r~~ 54 (146)
T cd03538 9 EIFALEMERLFGNAWIYVGHE---SQV-PNPGDYITTRIGDQPVVMVRHT 54 (146)
T ss_pred HHHHHHHHHHhhcCCEEEEEH---HHC-CCCCCEEEEEECCeeEEEEECC
Confidence 345567777788899987643 122 2356788888888999999864
No 17
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=48.84 E-value=40 Score=27.79 Aligned_cols=52 Identities=19% Similarity=0.442 Sum_probs=38.2
Q ss_pred hHHHHHHHHHhccccCCCceEEEEeCCCceeEEecCCcEEEEecC----CeEEEEEeeCC
Q 033684 37 CQSIAHYIKQKFDEAYRPAWHCVVGKDFGSCITHLCGSLIFFRME----MMEFLVFKDGK 92 (113)
Q Consensus 37 ~kdiA~~IK~~lD~kyg~~WHcIVG~~Fgs~vThe~~~~i~F~i~----~~~~LlfKt~~ 92 (113)
-.++..+||..++..++..| |.|. =|.+++-....+||.+. .+...+|++..
T Consensus 8 vsel~~~ik~~le~~~~~v~--v~gE--is~~~~~~sGH~Yf~Lkd~~a~i~~~~~~~~~ 63 (438)
T PRK00286 8 VSELNRYVKSLLERDLGQVW--VRGE--ISNFTRHSSGHWYFTLKDEIAQIRCVMFKGSA 63 (438)
T ss_pred HHHHHHHHHHHHHhhCCcEE--EEEE--eCCCeeCCCCeEEEEEEcCCcEEEEEEEcChh
Confidence 36899999999999987777 6676 12233335567899984 57899999764
No 18
>cd03472 Rieske_RO_Alpha_BPDO_like Rieske non-heme iron oxygenase (RO) family, Biphenyl dioxygenase (BPDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of BPDO and similar proteins including cumene dioxygenase (CumDO), nitrobenzene dioxygenase (NBDO), alkylbenzene dioxygenase (AkbDO) and dibenzofuran 4,4a-dioxygenase (DFDO). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. BPDO degrades biphenyls and polychlorinated biphenyls (PCB's) while CumDO degrades cumene (isopropylbenzene), an aromatic hydrocarbon that is i
Probab=47.51 E-value=39 Score=23.29 Aligned_cols=41 Identities=12% Similarity=0.246 Sum_probs=27.3
Q ss_pred ccccCCCceEEEEeCCCceeEEecCCcEEEEecCCeEEEEEeeCC
Q 033684 48 FDEAYRPAWHCVVGKDFGSCITHLCGSLIFFRMEMMEFLVFKDGK 92 (113)
Q Consensus 48 lD~kyg~~WHcIVG~~Fgs~vThe~~~~i~F~i~~~~~LlfKt~~ 92 (113)
|++-|...|+.|.=.+ .+ -+++.+..+.+++..++|++..+
T Consensus 1 ~~~i~~~~W~~v~~~~---el-~~~g~~~~~~~~~~~i~l~r~~~ 41 (128)
T cd03472 1 LERVFARSWLLLGHET---HI-PKAGDYLTTYMGEDPVIVVRQKD 41 (128)
T ss_pred CcchhhCCCeEeEEHH---HC-CCCCCEEEEEECCceEEEEECCC
Confidence 4566888999875431 11 13466667778888888888643
No 19
>PF14900 DUF4493: Domain of unknown function (DUF4493)
Probab=46.40 E-value=47 Score=24.96 Aligned_cols=37 Identities=14% Similarity=0.282 Sum_probs=28.8
Q ss_pred HhccccCCCceEEEEeCCCceeEEe--cCC---cEEEEecCC
Q 033684 46 QKFDEAYRPAWHCVVGKDFGSCITH--LCG---SLIFFRMEM 82 (113)
Q Consensus 46 ~~lD~kyg~~WHcIVG~~Fgs~vTh--e~~---~~i~F~i~~ 82 (113)
..|.+.|+..|++-|...-+..+++ ... .-.||..+.
T Consensus 119 ~~f~~~f~~~y~vtV~~~~~~~~~~~~~~~~~~~~~Yf~~~~ 160 (235)
T PF14900_consen 119 DEFKKYFGSDYSVTVSTGAGGSVTFNKDETTSDRSAYFKAGE 160 (235)
T ss_pred HHHHhhhccceEEEEEccCCccEEEeeccCCCCcceEEECCC
Confidence 3466677778999998765777777 555 899999998
No 20
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=45.79 E-value=54 Score=18.80 Aligned_cols=32 Identities=19% Similarity=0.361 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhccc
Q 033684 15 DELQSHVMELAYQALDLHEVSDCQSIAHYIKQKFDE 50 (113)
Q Consensus 15 ~emq~~ai~~a~~al~~~~~~~~kdiA~~IK~~lD~ 50 (113)
+.|+++|++..+.-+++.. .+|-..|+++|.+
T Consensus 6 e~~KqEIL~EvrkEl~K~K----~EIIeA~~~eL~r 37 (40)
T PF08776_consen 6 ERLKQEILEEVRKELQKVK----EEIIEAIRQELSR 37 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhc
Confidence 3588999999999999865 4788888888865
No 21
>PF06150 ChaB: ChaB; InterPro: IPR009317 This family of proteins contain a conserved 60 residue region. This protein is known as ChaB in Escherichia coli and is found next to ChaA, which is a cation transporter protein. ChaB may be regulate ChaA function in some way.; PDB: 1SG7_A.
Probab=45.58 E-value=68 Score=19.42 Aligned_cols=43 Identities=16% Similarity=0.247 Sum_probs=28.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCCChHHHH-----HHHHHhccccCCCceE
Q 033684 11 TDMPDELQSHVMELAYQALDLHEVSDCQSIA-----HYIKQKFDEAYRPAWH 57 (113)
Q Consensus 11 sDM~~emq~~ai~~a~~al~~~~~~~~kdiA-----~~IK~~lD~kyg~~WH 57 (113)
..||..-|+--++....|++.|.+ .+.| ..+|+.+.+ -++.|.
T Consensus 7 ~~LP~~Aq~if~~afn~a~~~~~d---e~~A~~vAw~AVk~~Y~k-~~g~W~ 54 (57)
T PF06150_consen 7 EHLPEHAQRIFRKAFNSAWEEYGD---EERAHRVAWAAVKRKYEK-VNGRWV 54 (57)
T ss_dssp TT--SHHHHHHHHHHHHHHHH--S---HHHHHHHHHHHHHHHEEE-SSS-EE
T ss_pred hHCCHHHHHHHHHHHHHHHHhcCC---HhHHHHHHHHHHHHHhee-cCCEee
Confidence 467777777777788888888864 3454 568999999 788896
No 22
>PRK13007 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=45.25 E-value=1e+02 Score=23.94 Aligned_cols=39 Identities=23% Similarity=0.343 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHhcccc
Q 033684 13 MPDELQSHVMELAYQALDLHEVS-DCQSIAHYIKQKFDEA 51 (113)
Q Consensus 13 M~~emq~~ai~~a~~al~~~~~~-~~kdiA~~IK~~lD~k 51 (113)
|+.++..++++...+.++..+.. ++.++|++|+++|.+.
T Consensus 1 ~~~~~~~~~~~~l~~li~ips~s~~e~~~~~~l~~~l~~~ 40 (352)
T PRK13007 1 MTLDLAADLAELTAALVDIPSVSGDEKALADAVEAALRAL 40 (352)
T ss_pred CccchHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHhC
Confidence 45567788889999988865542 4678999999999985
No 23
>PRK14023 homoaconitate hydratase small subunit; Provisional
Probab=45.05 E-value=29 Score=25.45 Aligned_cols=59 Identities=12% Similarity=0.097 Sum_probs=31.7
Q ss_pred CCceEEeCCCCHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhcc----ccCCCceEEEEeCCCceeEE
Q 033684 4 GKPVVQETDMPDELQSHVMELAYQALDLHEVSDCQSIAHYIKQKFD----EAYRPAWHCVVGKDFGSCIT 69 (113)
Q Consensus 4 ~~~~I~~sDM~~emq~~ai~~a~~al~~~~~~~~kdiA~~IK~~lD----~kyg~~WHcIVG~~Fgs~vT 69 (113)
+++.+...|.+.+.-.-+ +-+.... +..++++++-..+| +++.+..-+|.|+||||=-|
T Consensus 2 grv~~~gdnIdTD~IiPa-----~~l~~~~--~~~~l~~~~f~~~~p~f~~~~~~g~IIVaG~NFG~GSS 64 (166)
T PRK14023 2 ARVWKFGDNINTDDILPG-----KYAPFMV--GEDRFHNYAFAHLRPEFASTVRPGDILVAGRNFGLGSS 64 (166)
T ss_pred CceEEcCCCcchhhcchH-----HHhccCC--CHHHHHhhhccCCChhhHhhcCCCCEEEccCcccCCcc
Confidence 345566666666633221 2222111 24566666655555 44555666667889996433
No 24
>PHA02053 hypothetical protein
Probab=40.62 E-value=8.1 Score=26.62 Aligned_cols=20 Identities=30% Similarity=0.823 Sum_probs=16.1
Q ss_pred hccccCCCceEEEEeCCCcee
Q 033684 47 KFDEAYRPAWHCVVGKDFGSC 67 (113)
Q Consensus 47 ~lD~kyg~~WHcIVG~~Fgs~ 67 (113)
+|.+.| +.|-||-.+++||+
T Consensus 72 ~F~kay-R~~~VIysr~lGS~ 91 (115)
T PHA02053 72 EFQKAY-RSWGVIYSRSLGSY 91 (115)
T ss_pred HHHHHH-HhcCeeeecCCCch
Confidence 455555 68999999999986
No 25
>cd03545 Rieske_RO_Alpha_OHBDO_like Rieske non-heme iron oxygenase (RO) family, Ortho-halobenzoate-1,2-dioxygenase (OHBDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of OHBDO, salicylate 5-hydroxylase (S5H), terephthalate 1,2-dioxygenase system (TERDOS) and similar proteins. ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. OHBDO converts 2-chlorobenzoate (2-CBA) to catechol as well as 2,4-dCBA and 2,5-dCBA to 4-chlorocatechol, as part of the chlorobenzoate degradation pathway. Although ortho-substituted chlorobe
Probab=40.56 E-value=58 Score=23.07 Aligned_cols=46 Identities=15% Similarity=0.218 Sum_probs=32.9
Q ss_pred HHHHHhccccCC-CceEEEEeCCCceeEEecCCcEEEEecCCeEEEEEeeC
Q 033684 42 HYIKQKFDEAYR-PAWHCVVGKDFGSCITHLCGSLIFFRMEMMEFLVFKDG 91 (113)
Q Consensus 42 ~~IK~~lD~kyg-~~WHcIVG~~Fgs~vThe~~~~i~F~i~~~~~LlfKt~ 91 (113)
+....++++-|. ..|+.+.-. +.+ -+++.++-+.+++..++|++..
T Consensus 11 ~~~~~E~~~if~~~~W~~v~~~---~el-~~~g~~~~~~i~g~~iiv~r~~ 57 (150)
T cd03545 11 AYFDREQERIFRGKTWSYVGLE---AEI-PNAGDFKSTFVGDTPVVVTRAE 57 (150)
T ss_pred HHHHHHHHhhhCCCceEEEEEH---HHC-CCCCCEEEEEECCceEEEEECC
Confidence 566778888895 899999765 222 1346677788888888888853
No 26
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=37.03 E-value=84 Score=24.49 Aligned_cols=52 Identities=12% Similarity=0.145 Sum_probs=35.7
Q ss_pred eCCCCHHHHHHHHHHHHHH------------HHhcCCCChHHHHHHHHHhccccCCCceEEEE-eCCC
Q 033684 10 ETDMPDELQSHVMELAYQA------------LDLHEVSDCQSIAHYIKQKFDEAYRPAWHCVV-GKDF 64 (113)
Q Consensus 10 ~sDM~~emq~~ai~~a~~a------------l~~~~~~~~kdiA~~IK~~lD~kyg~~WHcIV-G~~F 64 (113)
..+||.+.+...++.+.+. -......+..+..+.+++.||. |.|++|| +|.-
T Consensus 94 ~~~i~~~~~~rlI~~~~~~g~~v~~EvG~K~~~~~~~~~~~~~i~~~~~~LeA---GA~~ViiEarEs 158 (237)
T TIGR03849 94 SMEISLEERCNLIERAKDNGFMVLSEVGKKSPEKDSELTPDDRIKLINKDLEA---GADYVIIEGRES 158 (237)
T ss_pred ccCCCHHHHHHHHHHHHhCCCeEeccccccCCcccccCCHHHHHHHHHHHHHC---CCcEEEEeehhc
Confidence 4589999999999988843 1111112246778888888986 7888888 5433
No 27
>PF06457 Ectatomin: Ectatomin; InterPro: IPR009458 Ectatomin is a toxin from the venom of the ant Ectatomma tuberculatum. Ectatomin can efficiently insert into the plasma membrane, where it can form channels. Ectatomin was shown to inhibit L-type calcium currents in isolated rat cardiac myocytes []. In these cells, ectatomin induces a gradual, irreversible increase in ion leakage across the membrane, which can lead to cell death. Ectatomin is comprised of two subunits, A and B, which are homologous. The structure of ectatomin reveals that each subunit consists of two alpha helices with a connecting hinge region, which form a hairpin structure that is stabilised by disulphide bridges. A disulphide bridge between the hinge regions of the two subunits links the heterodimer together, forming a closed bundle of four helices with a left-handed twist [].; GO: 0005216 ion channel activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1ECI_A.
Probab=36.42 E-value=57 Score=17.82 Aligned_cols=13 Identities=54% Similarity=0.618 Sum_probs=10.4
Q ss_pred HHHHHHHHHhccc
Q 033684 38 QSIAHYIKQKFDE 50 (113)
Q Consensus 38 kdiA~~IK~~lD~ 50 (113)
.+||.+||++.|+
T Consensus 22 g~iat~ik~~c~k 34 (34)
T PF06457_consen 22 GSIATMIKRKCDK 34 (34)
T ss_dssp CCHHHHHHHHCH-
T ss_pred ccHHHHHHHHhCC
Confidence 4799999998774
No 28
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=35.72 E-value=96 Score=22.29 Aligned_cols=39 Identities=18% Similarity=0.275 Sum_probs=28.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCC------------ChHHHHHHHHHhcc
Q 033684 11 TDMPDELQSHVMELAYQALDLHEVS------------DCQSIAHYIKQKFD 49 (113)
Q Consensus 11 sDM~~emq~~ai~~a~~al~~~~~~------------~~kdiA~~IK~~lD 49 (113)
.+||++.++++++...+-++.-..+ +++++|+.|+.+..
T Consensus 15 ~~lp~~e~~e~l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~~~~ 65 (181)
T PF08006_consen 15 KKLPEEEREEILEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILAEYS 65 (181)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHHhhh
Confidence 3699999999999888777653210 36788888886543
No 29
>PF07742 BTG: BTG family; InterPro: IPR002087 Anti-proliferative proteins have been shown to include mammalian and avian protein BTG1 (which appears to be involved in negative regulation of cell proliferation) and rat/mouse NGF-inducible protein PC3/TIS21 (BTG2) [, , ]. These proteins have from 158 to 363 amino acid residues, that are highly similar and include 3 conserved cysteine residues. BTG2 seems to have a signal sequence; while the other proteins may lack such a domain. The sequence of the N-terminal half of these proteins is well conserved.; PDB: 3DJU_B 3E9V_A 2Z15_D 2D5R_B 3DJN_B.
Probab=34.63 E-value=32 Score=23.83 Aligned_cols=20 Identities=20% Similarity=0.439 Sum_probs=15.5
Q ss_pred HHHHHHHHHhccccCCCceE
Q 033684 38 QSIAHYIKQKFDEAYRPAWH 57 (113)
Q Consensus 38 kdiA~~IK~~lD~kyg~~WH 57 (113)
...++.|.+.|-.+|.++|+
T Consensus 28 ~~F~~~L~~~L~~ry~~HW~ 47 (118)
T PF07742_consen 28 DRFAEELENLLCERYKGHWY 47 (118)
T ss_dssp HHHHHHHHHHHHHHHTTS--
T ss_pred HHHHHHHHHHHHHHHhCCCC
Confidence 44688899999999999997
No 30
>PF11858 DUF3378: Domain of unknown function (DUF3378); InterPro: IPR024568 Ribonuclease HIII 3.1.26 from EC cleaves RNA from DNA-RNA hybrids. It catalyses endonucleolytic cleavage to 5'-phospho-monoesters. Two types of ribonuclease H in Bacillus subtilis, RNase HII (rnhB) and RNase HIII (rnhC), are both known experimentally and are quite similar to each other []. The only RNase H homologue in the Mycoplasmas resembles rnhC. Archaeal forms resemble HII more closely than HIII. This entry represents the uncharacterised N-terminal domain of bacterial RNase HIII.; PDB: 3ASM_A 2D0C_A 2D0B_A 2D0A_A.
Probab=34.58 E-value=46 Score=21.55 Aligned_cols=21 Identities=14% Similarity=0.188 Sum_probs=17.0
Q ss_pred CCcEEEEecCCeEEEEEeeCC
Q 033684 72 CGSLIFFRMEMMEFLVFKDGK 92 (113)
Q Consensus 72 ~~~~i~F~i~~~~~LlfKt~~ 92 (113)
++..+.++.++..|.+|+||.
T Consensus 29 p~~~f~aK~~~~tIt~Y~SGK 49 (81)
T PF11858_consen 29 PYAVFQAKYNGVTITAYKSGK 49 (81)
T ss_dssp TTEEEEEEETTEEEEEETTSE
T ss_pred CCEEEEEeCCCeEEEEEeCCe
Confidence 445566889999999999994
No 31
>cd01579 AcnA_Bact_Swivel Bacterial Aconitase-like swivel domain. Aconitase (aconitate hydratase or citrate hydrolyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism. This distinct subfamily is found only in bacteria and archea. Its exact characteristics are not known.
Probab=34.42 E-value=27 Score=24.35 Aligned_cols=16 Identities=19% Similarity=0.225 Sum_probs=11.2
Q ss_pred CCCceEEEEeCCCcee
Q 033684 52 YRPAWHCVVGKDFGSC 67 (113)
Q Consensus 52 yg~~WHcIVG~~Fgs~ 67 (113)
+|..+-+|.|+|||+=
T Consensus 46 ~~~~~iiVaG~nFG~G 61 (121)
T cd01579 46 AAGPGFIVGGENYGQG 61 (121)
T ss_pred cCCCeEEEcCCcCCCC
Confidence 3555667778899964
No 32
>PF12362 DUF3646: DNA polymerase III gamma and tau subunits C terminal; InterPro: IPR022107 This domain family is found in bacteria, and is approximately 120 amino acids in length. The family is found in association with PF00004 from PFAM. The proteins in this family are frequently annotated as the gamma and tau subunits of DNA polymerase III, however there is little accompanying literature to back this up.
Probab=33.64 E-value=50 Score=22.87 Aligned_cols=29 Identities=17% Similarity=0.344 Sum_probs=25.8
Q ss_pred hHHHHHHHHHhccccCCCceEEEEeCCCc
Q 033684 37 CQSIAHYIKQKFDEAYRPAWHCVVGKDFG 65 (113)
Q Consensus 37 ~kdiA~~IK~~lD~kyg~~WHcIVG~~Fg 65 (113)
..++|..|.+.|..--|..|.|.+++.=|
T Consensus 48 p~dl~~~L~~~L~~wTG~rW~V~~s~~~g 76 (117)
T PF12362_consen 48 PKDLAQRLSRKLQEWTGQRWIVSLSNEPG 76 (117)
T ss_pred CHHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 48999999999999999999999987644
No 33
>PF10069 DICT: Sensory domain found in DIguanylate Cyclases & Two-component systems; InterPro: IPR019278 This entry, found in various cyanobacterial sensor proteins that catalyse the reaction [ATP + protein L-histidine = ADP + protein N- phospho-L-histidine], has no known function.
Probab=28.60 E-value=69 Score=22.13 Aligned_cols=21 Identities=29% Similarity=0.640 Sum_probs=13.9
Q ss_pred cCCCceEEEE-eCCCceeEEec
Q 033684 51 AYRPAWHCVV-GKDFGSCITHL 71 (113)
Q Consensus 51 kyg~~WHcIV-G~~Fgs~vThe 71 (113)
.....|+||| |.+|.|.+..+
T Consensus 106 ~L~~EWfvvv~~~~~~~~LvA~ 127 (129)
T PF10069_consen 106 PLRREWFVVVDGPHFAAALVAR 127 (129)
T ss_pred CceeEEEEEEECCCCeEEEEEe
Confidence 3456799988 45787766543
No 34
>PF12550 GCR1_C: Transcriptional activator of glycolytic enzymes; InterPro: IPR022210 This domain family is found in eukaryotes, and is approximately 80 amino acids in length. This family is activates the transcription of glycolytic enzymes.
Probab=27.89 E-value=18 Score=23.08 Aligned_cols=12 Identities=17% Similarity=0.797 Sum_probs=9.8
Q ss_pred HhccccCCCceE
Q 033684 46 QKFDEAYRPAWH 57 (113)
Q Consensus 46 ~~lD~kyg~~WH 57 (113)
..|+++||..|-
T Consensus 29 ~~le~~yG~~WR 40 (81)
T PF12550_consen 29 RSLEKKYGSKWR 40 (81)
T ss_pred HHHHHHhChhhc
Confidence 357899999996
No 35
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=27.88 E-value=50 Score=27.43 Aligned_cols=18 Identities=28% Similarity=0.418 Sum_probs=13.1
Q ss_pred CCceEEEEeCCCceeEEe
Q 033684 53 RPAWHCVVGKDFGSCITH 70 (113)
Q Consensus 53 g~~WHcIVG~~Fgs~vTh 70 (113)
+|.||||+--..--.||+
T Consensus 277 ~GWWHvVlNle~TIAiTq 294 (407)
T KOG2130|consen 277 SGWWHVVLNLEPTIAITQ 294 (407)
T ss_pred CCeEEEEeccCceeeeee
Confidence 567999987666666664
No 36
>cd01674 Homoaconitase_Swivel Homoaconitase swivel domain. This family includes homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase is part of an unusual lysine biosynthesis pathway found only in filamentous fungi, in which lysine is synthesized via the alpha-aminoadipate pathway. In this pathway, homoaconitase catalyzes the conversion of cis-homoaconitic acid into homoisocitric acid. The reaction mechanism is believed to be similar to that of other aconitases. This is the swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=27.61 E-value=63 Score=23.03 Aligned_cols=33 Identities=18% Similarity=0.450 Sum_probs=19.7
Q ss_pred hHHHHHHHHHhccccC----CCceEEEE-eCCCceeEEe
Q 033684 37 CQSIAHYIKQKFDEAY----RPAWHCVV-GKDFGSCITH 70 (113)
Q Consensus 37 ~kdiA~~IK~~lD~ky----g~~WHcIV-G~~Fgs~vTh 70 (113)
.+++|+++-+.+|..| .+. .+|| |+|||+=-+.
T Consensus 24 ~e~la~~~~e~~dp~f~~~v~~g-dilVaG~nFG~GSSR 61 (129)
T cd01674 24 PEKMAEVCMENYDSEFSTKTKQG-DILVSGFNFGTGSSR 61 (129)
T ss_pred HHHHHHhhcccCCchhhhcCCCC-CEEEeCCccCCCCcH
Confidence 4667777776666444 223 4555 6799965443
No 37
>PF08015 Pheromone: Fungal mating-type pheromone; InterPro: IPR012597 This family corresponds to mating-type pheromone proteins. The homobasidiomycetes, or mushroom fungi, have arguably the most complex mating system of all known organisms. Many species possess a mating system known as bifactorial incompatibility, where two unlinked loci control the mating-type of an individual incompatibility loci (the A and B mating-type loci). Each A mating-type sublocus encodes a pair of divergently transcribed homeodomain transcription factors while the genes responsible for B mating-type activity encode lipopeptide pheromones and G-protein -coupled pheromone receptors [].; GO: 0000772 mating pheromone activity, 0016020 membrane
Probab=26.30 E-value=37 Score=20.94 Aligned_cols=14 Identities=21% Similarity=0.434 Sum_probs=9.1
Q ss_pred hccccCCC--ceEEEE
Q 033684 47 KFDEAYRP--AWHCVV 60 (113)
Q Consensus 47 ~lD~kyg~--~WHcIV 60 (113)
.+++..|+ +|-|||
T Consensus 54 d~Er~~~g~~~~fCVI 69 (69)
T PF08015_consen 54 DFERRGGGGAGAFCVI 69 (69)
T ss_pred CccccCCCCceEEEeC
Confidence 34555555 688886
No 38
>cd01578 AcnA_Mitochon_Swivel Mitochondrial aconitase A swivel domain. Aconitase (also known as aconitate hydratase and citrate hydro-lyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. This is the mitochondrial form. The mitochondrial product is coded by a nuclear gene. Most members of this subfamily are mitochondrial but there are some bacterial members.
Probab=24.28 E-value=43 Score=24.39 Aligned_cols=17 Identities=12% Similarity=0.415 Sum_probs=12.6
Q ss_pred CCceEEEEeCCCceeEE
Q 033684 53 RPAWHCVVGKDFGSCIT 69 (113)
Q Consensus 53 g~~WHcIVG~~Fgs~vT 69 (113)
|-.|-+|.|+|||+=-+
T Consensus 68 g~~~iIVaG~nyG~GSS 84 (149)
T cd01578 68 GIKWVVIGDENYGEGSS 84 (149)
T ss_pred CCCeEEEccCccCCCCc
Confidence 55798888999985433
No 39
>TIGR03228 anthran_1_2_A anthranilate 1,2-dioxygenase, large subunit. Anthranilate (2-aminobenzoate) is an intermediate of tryptophan (Trp) biosynthesis and degradation. Members of this family are the large subunit of anthranilate 1,2-dioxygenase, which acts in Trp degradation by converting anthranilate to catechol. Closely related paralogs typically are the benzoate 1,2-dioxygenase large subunit, among the larger set of ring-hydroxylating dioxygenases.
Probab=24.22 E-value=1.1e+02 Score=25.82 Aligned_cols=47 Identities=15% Similarity=0.277 Sum_probs=34.7
Q ss_pred HHHHhccccCCCceEEEEeCCCceeEEecCCcEEEEecCCeEEEEEeeCCC
Q 033684 43 YIKQKFDEAYRPAWHCVVGKDFGSCITHLCGSLIFFRMEMMEFLVFKDGKD 93 (113)
Q Consensus 43 ~IK~~lD~kyg~~WHcIVG~~Fgs~vThe~~~~i~F~i~~~~~LlfKt~~~ 93 (113)
....++++-|+++|+.|-=. |-+ -+++.|+-+++++..++|+|..+.
T Consensus 26 if~~E~~~IF~~~W~~v~h~---sel-p~~GDy~t~~ig~~pviv~R~~dG 72 (438)
T TIGR03228 26 LFDLEMELIFEKNWIYACHE---SEL-PNNHDFVTVRAGRQPMIVTRDGKG 72 (438)
T ss_pred HHHHHHHHHHhhCCEEEEEH---HHC-CCCCCeEEEEECCeEEEEEECCCC
Confidence 34467777789999987543 333 345778889999999999997654
No 40
>TIGR02087 LEUD_arch 3-isopropylmalate dehydratase, small subunit. This subfamily is most closely related to the 3-isopropylmalate dehydratase, small subunits which form TIGR00171. This subfamily includes the members of TIGR02084 which are gene clustered with other genes of leucine biosynthesis. The rest of the subfamily includes mainly archaeal species which exhibit two hits to this model. In these cases it is possible that one or the other of the hits does not have a 3-isopropylmalate dehydratase activity but rather one of the other related aconitase-like activities.
Probab=24.03 E-value=62 Score=23.46 Aligned_cols=31 Identities=29% Similarity=0.444 Sum_probs=19.3
Q ss_pred hHHHHHHHHHhccccC----CCceEEEEeCCCcee
Q 033684 37 CQSIAHYIKQKFDEAY----RPAWHCVVGKDFGSC 67 (113)
Q Consensus 37 ~kdiA~~IK~~lD~ky----g~~WHcIVG~~Fgs~ 67 (113)
.+++++++-..+|..| .+..-+|.|+|||+=
T Consensus 26 ~~~l~~~~f~~~~p~f~~~~~~g~iiVaG~NFG~G 60 (154)
T TIGR02087 26 PDELASHAMEGIDPEFAKKVRPGDVIVAGKNFGCG 60 (154)
T ss_pred HHHHHhhccCcCCchhhhcCCCCcEEEcCCcccCC
Confidence 4677777766665433 445445557799964
No 41
>PF01743 PolyA_pol: Poly A polymerase head domain; InterPro: IPR002646 This group includes nucleic acid independent RNA polymerases, such as polynucleotide adenylyltransferase (2.7.7.19 from EC), which adds the poly (A) tail to mRNA. This group also includes the tRNA nucleotidyltransferase that adds the CCA to the 3' of the tRNA 2.7.7.25 from EC.; GO: 0003723 RNA binding, 0016779 nucleotidyltransferase activity, 0006396 RNA processing; PDB: 1VFG_A 3H38_A 3H3A_B 3H39_B 3H37_A 1MIY_A 1MIV_B 1MIW_B 1OU5_B 3AQN_A ....
Probab=23.17 E-value=2.4e+02 Score=19.13 Aligned_cols=37 Identities=16% Similarity=0.223 Sum_probs=26.5
Q ss_pred HHHHHHhccccCCCceEEEEeCCCceeEEecCCcEEEEe
Q 033684 41 AHYIKQKFDEAYRPAWHCVVGKDFGSCITHLCGSLIFFR 79 (113)
Q Consensus 41 A~~IK~~lD~kyg~~WHcIVG~~Fgs~vThe~~~~i~F~ 79 (113)
+..+.+.|.+++++.|++ |+.|+..--+..+..+.+.
T Consensus 28 ~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~di~ 64 (126)
T PF01743_consen 28 PEEFAKLLAKKLGGVFVV--GKRFGTVRVVFGGGSIDIA 64 (126)
T ss_dssp HHHHHHHHCTTCCEEEEE--ETTTTEEEEEETTCEEEEE
T ss_pred HHHHHHHHHhhccccccc--ccccceeeecCCCcccccc
Confidence 456677788888888777 9999987666665554443
No 42
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=22.99 E-value=78 Score=24.92 Aligned_cols=50 Identities=6% Similarity=0.036 Sum_probs=34.0
Q ss_pred CCceEEeCCCCHHHHHHHHHHHHHHHHhcCC-CChHHH-HHHHHHhccccCCCceEEE
Q 033684 4 GKPVVQETDMPDELQSHVMELAYQALDLHEV-SDCQSI-AHYIKQKFDEAYRPAWHCV 59 (113)
Q Consensus 4 ~~~~I~~sDM~~emq~~ai~~a~~al~~~~~-~~~kdi-A~~IK~~lD~kyg~~WHcI 59 (113)
..+.|..+|.+....+.|..-. |+. +..+.+ .+.++++|++.-|+.|.+.
T Consensus 128 ~~~~I~AtDId~~~L~~A~~G~------Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v~ 179 (268)
T COG1352 128 FRVKILATDIDLSVLEKARAGI------YPSRELLRGLPPELLRRYFERGGDGSYRVK 179 (268)
T ss_pred CceEEEEEECCHHHHHHHhcCC------CChhHhhccCCHHHHhhhEeecCCCcEEEC
Confidence 4689999999998776664332 331 101223 5777899999888878765
No 43
>PF02881 SRP54_N: SRP54-type protein, helical bundle domain; InterPro: IPR013822 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the N-terminal helical bundle domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 1J8M_F 1J8Y_F 2J37_W 2OG2_A 3B9Q_A 2V3C_C 3NDB_B 1ZU5_B 1ZU4_A 1WGW_A ....
Probab=22.97 E-value=1.2e+02 Score=18.26 Aligned_cols=38 Identities=13% Similarity=0.261 Sum_probs=18.6
Q ss_pred eCCCCHHHHHHHHHHHHH-HHHhcCCCChHHHHHHHHHh
Q 033684 10 ETDMPDELQSHVMELAYQ-ALDLHEVSDCQSIAHYIKQK 47 (113)
Q Consensus 10 ~sDM~~emq~~ai~~a~~-al~~~~~~~~kdiA~~IK~~ 47 (113)
.+|+..+.-+++++..++ .+........+.+-+.++.+
T Consensus 36 ~aDVg~~~a~~i~~~ik~~~~~~~~~~~~~~v~~~l~~~ 74 (75)
T PF02881_consen 36 EADVGVEVAEKIIENIKKKLIKKKGINPREEVKKALKEE 74 (75)
T ss_dssp HTTTSHHHHHHHHHHHHHHHHCTTSSHHHHHHHHHHHHH
T ss_pred HcCcCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHH
Confidence 456666666666666666 44422222123444444443
No 44
>PF13774 Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3BW6_A 1H8M_A 3EGX_C 2NUP_C 3EGD_C 2NUT_C 3KYQ_A 1IFQ_B 2VX8_D ....
Probab=22.92 E-value=2e+02 Score=17.76 Aligned_cols=41 Identities=17% Similarity=0.358 Sum_probs=24.9
Q ss_pred eEEecCCcEEE-Ee-cCCeEEEEEeeCCCCCchhhhhhhhhhcccc
Q 033684 67 CITHLCGSLIF-FR-MEMMEFLVFKDGKDCTESKEEAVGMLQKSQK 110 (113)
Q Consensus 67 ~vThe~~~~i~-F~-i~~~~~LlfKt~~~~~~~~~~~~~~~~~~~~ 110 (113)
..|++.+.+.+ +. -+++++|.--.. .-|+.-+++.|+.+++
T Consensus 16 k~s~~~~~~~fh~~~~~~i~~~citd~---~~~~r~aF~fL~~i~~ 58 (83)
T PF13774_consen 16 KMSYESGNYVFHYLVEDGIAYLCITDK---SYPKRVAFAFLEEIKQ 58 (83)
T ss_dssp EEEEEETTEEEEEEEETTEEEEEEEET---TS-HHHHHHHHHHHHH
T ss_pred eEEEEECCEEEEEEEcCCeEEEEEEcC---CCCcchHHHHHHHHHH
Confidence 34444444444 33 367777766554 4588899999998764
No 45
>PF08908 DUF1852: Domain of unknown function (DUF1852); InterPro: IPR015004 This group of proteins are functionally uncharacterised.
Probab=22.52 E-value=47 Score=26.79 Aligned_cols=49 Identities=24% Similarity=0.251 Sum_probs=35.0
Q ss_pred hccccCCCceEEEEeCCCceeEEecCCcEEEEecCCeEEEEEeeCCC-CCchhhhhhhhh
Q 033684 47 KFDEAYRPAWHCVVGKDFGSCITHLCGSLIFFRMEMMEFLVFKDGKD-CTESKEEAVGML 105 (113)
Q Consensus 47 ~lD~kyg~~WHcIVG~~Fgs~vThe~~~~i~F~i~~~~~LlfKt~~~-~~~~~~~~~~~~ 105 (113)
-+|++-|..-.=|||.||.|+|.- -+.+|||--.+.. +.-+-|+.+|-|
T Consensus 98 IvD~kt~~rieGivGNnFSSYVRD----------YDFSVlL~~hnk~~~~fs~P~~FGdL 147 (322)
T PF08908_consen 98 IVDHKTNERIEGIVGNNFSSYVRD----------YDFSVLLPEHNKDQPEFSIPENFGDL 147 (322)
T ss_pred EEecCCCceecceecccccccccc----------ccceeECHHHhCCCCCCCCCCchhhh
Confidence 478888888888999999999851 2566777666533 344667777766
No 46
>PF06884 DUF1264: Protein of unknown function (DUF1264); InterPro: IPR010686 This family contains a number of bacterial and eukaryotic proteins of unknown function that are approximately 200 residues long. Some family members are annotated as putative lipoproteins.
Probab=22.45 E-value=60 Score=24.24 Aligned_cols=20 Identities=20% Similarity=0.388 Sum_probs=14.3
Q ss_pred HHHHHHHhccccCCCceEEE
Q 033684 40 IAHYIKQKFDEAYRPAWHCV 59 (113)
Q Consensus 40 iA~~IK~~lD~kyg~~WHcI 59 (113)
+.+.+-+.+-+.||++||--
T Consensus 98 ae~~~m~~l~~tYGKt~HtW 117 (171)
T PF06884_consen 98 AEKAEMEKLVKTYGKTWHTW 117 (171)
T ss_pred HHHHHHHHHHhhhCCeEEec
Confidence 44555566778899998864
No 47
>PRK00466 acetyl-lysine deacetylase; Validated
Probab=22.22 E-value=2.5e+02 Score=21.89 Aligned_cols=43 Identities=9% Similarity=0.148 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHhcCC-CChHHHHHHHHHhccccCCCceEE
Q 033684 15 DELQSHVMELAYQALDLHEV-SDCQSIAHYIKQKFDEAYRPAWHC 58 (113)
Q Consensus 15 ~emq~~ai~~a~~al~~~~~-~~~kdiA~~IK~~lD~kyg~~WHc 58 (113)
+.|++++++...+.++--+. .++.++|++|+++|.+ .|-.++.
T Consensus 6 ~~~~~~~~~~l~~lv~i~s~s~~e~~~~~~l~~~l~~-~g~~~~~ 49 (346)
T PRK00466 6 ELVKQKAKELLLDLLSIYTPSGNETNATKFFEKISNE-LNLKLEI 49 (346)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHH-cCCeEEE
Confidence 45677788888777765432 2478999999999985 5655553
No 48
>TIGR01916 F420_cofE F420-0:gamma-glutamyl ligase. This model represents an enzyme of coenzyme F(420) biosynthesis, as catalyzed by MJ0768 of Methanococcus jannaschii and by the N-terminal half of FbiB of Mycobacterium bovis strain BCG. Note that only two glutamates are ligated in M. jannaschii, but five to six in the Mycobacterium lineage. In M. jannaschii, CofE catalyzes the GTP-dependent addition of two L-glutamates.
Probab=22.19 E-value=1.1e+02 Score=23.99 Aligned_cols=33 Identities=15% Similarity=0.118 Sum_probs=29.1
Q ss_pred ChHHHHHHHHHhccccCCCceEEEEeCCCceeE
Q 033684 36 DCQSIAHYIKQKFDEAYRPAWHCVVGKDFGSCI 68 (113)
Q Consensus 36 ~~kdiA~~IK~~lD~kyg~~WHcIVG~~Fgs~v 68 (113)
|....|+.|++.|-+++|..=-|||..+||--+
T Consensus 123 DPd~sA~~ir~~l~~~~g~~v~VIItDt~gr~~ 155 (243)
T TIGR01916 123 DPDASAEKIRRGLRELTGVDVGVIITDTNGRPF 155 (243)
T ss_pred ChHHHHHHHHHHHHHHHCCCEEEEEECCCCCcc
Confidence 467789999999999999999999999888653
No 49
>PF08958 DUF1871: Domain of unknown function (DUF1871); InterPro: IPR015053 This set of hypothetical proteins is produced by prokaryotes pertaining to the Bacillus genus. ; PDB: 1U84_A.
Probab=22.17 E-value=87 Score=20.26 Aligned_cols=28 Identities=21% Similarity=0.332 Sum_probs=19.5
Q ss_pred HHHHHHhcCCCChHHHHHHHHHhccccCCC
Q 033684 25 AYQALDLHEVSDCQSIAHYIKQKFDEAYRP 54 (113)
Q Consensus 25 a~~al~~~~~~~~kdiA~~IK~~lD~kyg~ 54 (113)
+..++...+ +...+|+.|..-|...||.
T Consensus 27 Iv~~v~~~~--~~~~LA~~Iq~If~~SF~e 54 (79)
T PF08958_consen 27 IVQAVHEND--DPEELAKKIQSIFEFSFGE 54 (79)
T ss_dssp HHHHHTT-S---HHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHhCC--CHHHHHHHHHHHHHHHHcc
Confidence 344555444 4789999999999888874
No 50
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ]. TBP associates with a host of factors, including the general transcription factors TFIIA, -B, -D, -E, and -H, to form huge multi-subunit pre-initiation complexes on the core promoter. Through its association with different transcription factors, TBP can initiate transcription from different RNA polymerases. There are several related TBPs, including TBP-like (TBPL) proteins []. The C-terminal core of TBP (~180 residues) is highly conserved and contains two 77-amino acid repeats that produce a saddle-shaped structure that straddles the DNA; this region binds to the TATA box and interacts with transcription factors and regulatory proteins []. By contrast, the N-terminal region varies in both length and sequence.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0006367 transcription initiation from RNA polymerase II promoter; PDB: 1D3U_A 1PCZ_B 1AIS_A 1NGM_A 1TBP_A 1TBA_B 1YTB_A 1RM1_A 1YTF_A 1NH2_A ....
Probab=22.10 E-value=1e+02 Score=19.56 Aligned_cols=25 Identities=20% Similarity=0.372 Sum_probs=16.0
Q ss_pred EEecCCc--EEEEec--CCeEEEEEeeCC
Q 033684 68 ITHLCGS--LIFFRM--EMMEFLVFKDGK 92 (113)
Q Consensus 68 vThe~~~--~i~F~i--~~~~~LlfKt~~ 92 (113)
+.|+|+. .+.+++ ....++||+||.
T Consensus 31 ~~YePe~fpgl~~r~~~p~~t~~IF~sGk 59 (86)
T PF00352_consen 31 VEYEPERFPGLIYRLRNPKATVLIFSSGK 59 (86)
T ss_dssp EEEETTTESSEEEEETTTTEEEEEETTSE
T ss_pred cEEeeccCCeEEEeecCCcEEEEEEcCCE
Confidence 4666663 234444 377888998885
No 51
>PRK06489 hypothetical protein; Provisional
Probab=21.86 E-value=50 Score=26.01 Aligned_cols=32 Identities=9% Similarity=0.169 Sum_probs=21.9
Q ss_pred HHHHHHHHHhccccCC-CceEEEEeCCCceeEE
Q 033684 38 QSIAHYIKQKFDEAYR-PAWHCVVGKDFGSCIT 69 (113)
Q Consensus 38 kdiA~~IK~~lD~kyg-~~WHcIVG~~Fgs~vT 69 (113)
.++|+.+...+....| ..+|+|||-|+|+.+.
T Consensus 136 ~~~a~~~~~~l~~~lgi~~~~~lvG~SmGG~vA 168 (360)
T PRK06489 136 DDMVEAQYRLVTEGLGVKHLRLILGTSMGGMHA 168 (360)
T ss_pred HHHHHHHHHHHHHhcCCCceeEEEEECHHHHHH
Confidence 5667666665533344 4578899999998764
No 52
>smart00099 btg1 tob/btg1 family. The tob/btg1 is a family of proteins that inhibit cell proliferation.
Probab=21.73 E-value=1.5e+02 Score=20.42 Aligned_cols=38 Identities=16% Similarity=0.315 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhcCCCC---hHHHHHHHHHhccccCCCceE
Q 033684 20 HVMELAYQALDLHEVSD---CQSIAHYIKQKFDEAYRPAWH 57 (113)
Q Consensus 20 ~ai~~a~~al~~~~~~~---~kdiA~~IK~~lD~kyg~~WH 57 (113)
.++.-....+++++.-+ ....++.|-+.|-.+|-++|+
T Consensus 7 ~av~Fl~~~l~~~~~l~~~~v~~F~~~L~~~L~~~y~~HWy 47 (108)
T smart00099 7 AAVNFITSLLRKHNKLSKRRVEIFAEKLTRLLKEKYKNHWY 47 (108)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 34555666676665422 234588888888889988886
No 53
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=21.65 E-value=91 Score=21.93 Aligned_cols=26 Identities=15% Similarity=0.087 Sum_probs=22.4
Q ss_pred HHHHHHHHHhccccCCCceEEEEeCC
Q 033684 38 QSIAHYIKQKFDEAYRPAWHCVVGKD 63 (113)
Q Consensus 38 kdiA~~IK~~lD~kyg~~WHcIVG~~ 63 (113)
...|+.|++.|..+||+...|.|..-
T Consensus 2 ~~aA~Al~eal~~~~~~~~~v~v~D~ 27 (169)
T PF06925_consen 2 NSAARALAEALERRRGPDAEVEVVDF 27 (169)
T ss_pred HHHHHHHHHHHHhhcCCCCEEEEEeh
Confidence 35799999999999999999998763
No 54
>PF06840 DUF1241: Protein of unknown function (DUF1241); InterPro: IPR009652 This family consists of several programmed cell death 10 protein (PDCD10 or TFAR15) sequences. The function of this family is unknown.; PDB: 3L8I_A 3RQG_B 3RQE_B 3L8J_A 3RQF_B 3AJM_B.
Probab=21.53 E-value=57 Score=23.86 Aligned_cols=14 Identities=36% Similarity=0.427 Sum_probs=12.5
Q ss_pred hHHHHHHHHHhccc
Q 033684 37 CQSIAHYIKQKFDE 50 (113)
Q Consensus 37 ~kdiA~~IK~~lD~ 50 (113)
.|+||..||+-||.
T Consensus 122 IK~IAsaIK~lLdA 135 (154)
T PF06840_consen 122 IKEIASAIKKLLDA 135 (154)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 58999999999984
No 55
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=21.37 E-value=45 Score=22.27 Aligned_cols=7 Identities=43% Similarity=1.184 Sum_probs=5.8
Q ss_pred eEEEEeC
Q 033684 56 WHCVVGK 62 (113)
Q Consensus 56 WHcIVG~ 62 (113)
=||+||.
T Consensus 90 IhCsIGd 96 (97)
T PF10302_consen 90 IHCSIGD 96 (97)
T ss_pred EEEeccC
Confidence 4999995
No 56
>PRK13293 F420-0--gamma-glutamyl ligase; Reviewed
Probab=20.83 E-value=1.2e+02 Score=23.81 Aligned_cols=32 Identities=13% Similarity=0.124 Sum_probs=28.5
Q ss_pred ChHHHHHHHHHhccccCCCceEEEEeCCCcee
Q 033684 36 DCQSIAHYIKQKFDEAYRPAWHCVVGKDFGSC 67 (113)
Q Consensus 36 ~~kdiA~~IK~~lD~kyg~~WHcIVG~~Fgs~ 67 (113)
|...-|+.|++.|-+++|..=-|||..+||--
T Consensus 124 DPd~SA~~ir~~l~~~~g~~v~VIItDt~gr~ 155 (245)
T PRK13293 124 NPDESAERIREGLEELTGKKVGVIITDTNGRP 155 (245)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEEcCCCcc
Confidence 56778999999999999999999999999843
No 57
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=20.82 E-value=59 Score=29.45 Aligned_cols=24 Identities=25% Similarity=0.504 Sum_probs=19.3
Q ss_pred CCceEEEEeCCCceeEEecCCcEE
Q 033684 53 RPAWHCVVGKDFGSCITHLCGSLI 76 (113)
Q Consensus 53 g~~WHcIVG~~Fgs~vThe~~~~i 76 (113)
.|..||||...|||.+++-.+--+
T Consensus 586 ~grYQCVvtN~FGStysqk~KltV 609 (873)
T KOG4194|consen 586 EGRYQCVVTNHFGSTYSQKAKLTV 609 (873)
T ss_pred CceEEEEEecccCcchhheeEEEe
Confidence 478999999999999887655433
Done!