Query 033684
Match_columns 113
No_of_seqs 116 out of 540
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 08:05:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033684.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033684hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rjs_A Dynein light chain moto 100.0 1.3E-43 4.4E-48 235.9 8.5 89 1-91 1-89 (89)
2 4ds1_A Dynein light chain 1, c 100.0 1.5E-41 5E-46 229.3 9.4 86 4-91 12-97 (97)
3 1yo3_A Dynein light chain 1; s 100.0 9.5E-41 3.2E-45 227.2 10.9 87 3-91 16-102 (102)
4 1use_A VAsp, vasodilator-stimu 60.3 12 0.00042 21.1 3.5 34 15-52 10-43 (45)
5 3e9v_A Protein BTG2; B-cell tr 59.1 4.6 0.00016 27.3 1.9 46 12-57 1-48 (120)
6 3bw6_A Synaptobrevin homolog Y 48.2 31 0.0011 23.2 4.7 42 66-110 59-103 (144)
7 1wj7_A Hypothetical protein (R 47.5 6.6 0.00022 26.0 1.1 35 24-62 56-91 (104)
8 1eci_A Ectatomin; pore-forming 45.7 33 0.0011 18.2 4.0 32 15-50 5-36 (37)
9 2nut_C Vesicle-trafficking pro 42.6 36 0.0012 23.9 4.5 42 66-110 51-94 (196)
10 1eci_B Ectatomin; pore-forming 37.1 13 0.00046 19.5 1.1 13 38-50 22-34 (34)
11 2bmo_A Oxygenase-alpha NBDO; n 35.0 45 0.0015 26.3 4.4 47 43-93 24-70 (447)
12 2gbw_A Biphenyl 2,3-dioxygenas 33.7 48 0.0016 26.2 4.4 46 43-92 25-70 (454)
13 3gzx_A Biphenyl dioxygenase su 32.5 89 0.003 25.1 5.8 47 42-92 44-90 (457)
14 1uli_A Biphenyl dioxygenase la 31.2 56 0.0019 25.9 4.4 48 42-93 42-89 (460)
15 3uh9_A Metallothiol transferas 31.1 96 0.0033 19.2 5.0 29 67-95 29-57 (145)
16 1qwg_A PSL synthase;, (2R)-pho 30.5 1E+02 0.0035 23.1 5.5 50 10-62 108-170 (251)
17 2z15_A Protein TOB1; human TOB 30.4 10 0.00035 25.9 -0.1 20 38-57 33-52 (130)
18 3vba_A Isopropylmalate/citrama 29.2 19 0.00067 25.7 1.2 18 50-67 49-66 (176)
19 1wgn_A UBAP1, ubiquitin associ 28.6 86 0.003 18.8 3.9 29 23-52 34-62 (63)
20 2b1x_A Naphthalene dioxygenase 27.8 1.1E+02 0.0039 24.2 5.6 46 43-92 33-78 (470)
21 3vca_A Ring-hydroxylating diox 27.6 1.1E+02 0.0037 24.1 5.5 48 42-93 30-77 (412)
22 3kyq_A YKT6, synaptobrevin hom 27.3 1E+02 0.0036 21.8 4.9 42 66-110 56-100 (199)
23 1wyo_A Protein EB3, microtubul 25.4 87 0.003 21.9 4.0 44 10-54 71-128 (159)
24 2pkp_A Homoaconitase small sub 24.7 26 0.0009 24.7 1.2 16 51-66 48-63 (170)
25 2hcu_A 3-isopropylmalate dehyd 23.9 31 0.0011 25.3 1.5 16 51-66 82-97 (213)
26 2jt1_A PEFI protein; solution 23.5 76 0.0026 19.2 3.1 30 13-43 1-33 (77)
27 3n0q_A Putative aromatic-ring 23.4 1.6E+02 0.0053 23.2 5.6 48 42-93 28-75 (409)
28 4afi_A AP-3 complex subunit de 22.2 1.4E+02 0.0047 20.8 4.6 58 37-110 78-137 (173)
29 3kyz_A Sensor protein PFES; AP 21.8 1.1E+02 0.0036 20.6 3.8 56 6-63 8-63 (125)
30 2b61_A Homoserine O-acetyltran 21.1 35 0.0012 24.5 1.3 34 37-70 136-169 (377)
31 3k6g_A Telomeric repeat-bindin 20.3 45 0.0015 22.1 1.6 43 15-58 7-63 (111)
No 1
>3rjs_A Dynein light chain motor protein; parasite, LC8, DLC8, TGDLC8, LIG PIN, DLC1, dynll1, transport protein; 1.50A {Toxoplasma gondii} PDB: 1pwj_A 2xqq_A 1re6_A 3p8m_A 3dvt_A 2pg1_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3brl_A 3dvh_A 3dvp_A 1pwk_A 1f3c_A 1f95_A 1f96_A ...
Probab=100.00 E-value=1.3e-43 Score=235.88 Aligned_cols=89 Identities=40% Similarity=0.804 Sum_probs=85.3
Q ss_pred CCCCCceEEeCCCCHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhccccCCCceEEEEeCCCceeEEecCCcEEEEec
Q 033684 1 MLEGKPVVQETDMPDELQSHVMELAYQALDLHEVSDCQSIAHYIKQKFDEAYRPAWHCVVGKDFGSCITHLCGSLIFFRM 80 (113)
Q Consensus 1 M~~~~~~I~~sDM~~emq~~ai~~a~~al~~~~~~~~kdiA~~IK~~lD~kyg~~WHcIVG~~Fgs~vThe~~~~i~F~i 80 (113)
|++++++|+.+|||++||++|+++|.+|+++|+. +++||++||++||++|||+||||||++|||+|||++++||||++
T Consensus 1 m~~~k~~i~~~dM~~emq~~a~~~a~~al~~~~~--ek~iA~~IK~~fD~kyg~~WhciVG~~Fgs~vthe~~~fiyF~~ 78 (89)
T 3rjs_A 1 MADRKAVIKNADMPEDLQQDAIDCANQALEKYNI--EKDIAAFIKKEFDRKHNPTWHCVVGRNFGSYVTHETHHFIYFYI 78 (89)
T ss_dssp --CCCCEEEEEESCHHHHHHHHHHHHHHHHHCCS--HHHHHHHHHHHHHHHHCSCCEEEEESSCCCCCCEEEEEEEEEEE
T ss_pred CCCCccEEEECCCCHHHHHHHHHHHHHHHHHCCc--HHHHHHHHHHHHhcccCCCCEEEEecCeeEEEEEcCCcEEEEEE
Confidence 8899999999999999999999999999999987 69999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeeC
Q 033684 81 EMMEFLVFKDG 91 (113)
Q Consensus 81 ~~~~~LlfKt~ 91 (113)
|+++||||||+
T Consensus 79 g~~~iLlfKtg 89 (89)
T 3rjs_A 79 GQVAVLLFKSG 89 (89)
T ss_dssp TTEEEEEEEEC
T ss_pred CCEEEEEEecC
Confidence 99999999996
No 2
>4ds1_A Dynein light chain 1, cytoplasmic; dynein light chain fold, peptide binding, nucle structural protein-transport protein complex; 1.85A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-41 Score=229.26 Aligned_cols=86 Identities=35% Similarity=0.725 Sum_probs=83.8
Q ss_pred CCceEEeCCCCHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhccccCCCceEEEEeCCCceeEEecCCcEEEEecCCe
Q 033684 4 GKPVVQETDMPDELQSHVMELAYQALDLHEVSDCQSIAHYIKQKFDEAYRPAWHCVVGKDFGSCITHLCGSLIFFRMEMM 83 (113)
Q Consensus 4 ~~~~I~~sDM~~emq~~ai~~a~~al~~~~~~~~kdiA~~IK~~lD~kyg~~WHcIVG~~Fgs~vThe~~~~i~F~i~~~ 83 (113)
++++|+.+|||++||++|+++|.+|+++|+. +++||++||++||++|||+||||||++|||+|||++++||||++|++
T Consensus 12 ~k~~I~~~DM~~emq~~a~~~a~~al~~~~~--ek~iA~~IK~~fDkkyG~~WhcIVG~~Fgs~vThe~~~fiyF~~g~~ 89 (97)
T 4ds1_A 12 STPIVKASDITDKLKEDILTISKDALDKYQL--ERDIAGTVKKQLDVKYGNTWHVIVGKNFGSYVTHEKGHFVYFYIGPL 89 (97)
T ss_dssp CCCEEEEEEECHHHHHHHHHHHHHHHHHCSS--HHHHHHHHHHHHHHHHCSCEEEEEEEEEEEEEEECTTEEEEEEETTE
T ss_pred CccEEEECCCCHHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhCccCCCCEEEEccCccEEEEEcCCcEEEEEECCE
Confidence 6899999999999999999999999999986 79999999999999999999999999999999999999999999999
Q ss_pred EEEEEeeC
Q 033684 84 EFLVFKDG 91 (113)
Q Consensus 84 ~~LlfKt~ 91 (113)
+||||||+
T Consensus 90 aiLlfKtg 97 (97)
T 4ds1_A 90 AFLVFKTA 97 (97)
T ss_dssp EEEEEECC
T ss_pred EEEEEecC
Confidence 99999996
No 3
>1yo3_A Dynein light chain 1; structural genomics consortium, microtub malaria, SGC, transport protein; 1.65A {Plasmodium falciparum} PDB: 1f3c_A 1f95_A 1f96_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3dvt_A 2pg1_A 3p8m_A 1pwj_A 2xqq_A 3brl_A 1re6_A 1cmi_A 3dvh_A 3dvp_A ...
Probab=100.00 E-value=9.5e-41 Score=227.16 Aligned_cols=87 Identities=41% Similarity=0.755 Sum_probs=82.9
Q ss_pred CCCceEEeCCCCHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhccccCCCceEEEEeCCCceeEEecCCcEEEEecCC
Q 033684 3 EGKPVVQETDMPDELQSHVMELAYQALDLHEVSDCQSIAHYIKQKFDEAYRPAWHCVVGKDFGSCITHLCGSLIFFRMEM 82 (113)
Q Consensus 3 ~~~~~I~~sDM~~emq~~ai~~a~~al~~~~~~~~kdiA~~IK~~lD~kyg~~WHcIVG~~Fgs~vThe~~~~i~F~i~~ 82 (113)
.++++|+.+|||++||++|+++|.+|+++|+. +++||++||++||++|||+||||||++|||+|||++++||||++|+
T Consensus 16 ~~~~~I~~~DM~~emq~~a~~~a~~Al~k~~~--ekdiA~~IK~~fDkkyG~~WHcIVG~~FGs~vThe~~~fiyF~~g~ 93 (102)
T 1yo3_A 16 PRGSVVKNVDMTEEMQIDAIDCANQALQKYNV--EKDIAAHIKKEFDRKYDPTWHCVVGRNFGSYVTHETKNFIYFYIGQ 93 (102)
T ss_dssp --CCCEEETTSCHHHHHHHHHHHHHHHHHCSS--HHHHHHHHHHHHHHHHCSCEEEEESSSCCCEEESCCCEEEEEEETT
T ss_pred CCCCEEEECCCCHHHHHHHHHHHHHHHHHcCc--HHHHHHHHHHHHhhhcCCCCEEEEccCeeEEEEEeCCcEEEEEECC
Confidence 36799999999999999999999999999976 7999999999999999999999999999999999999999999999
Q ss_pred eEEEEEeeC
Q 033684 83 MEFLVFKDG 91 (113)
Q Consensus 83 ~~~LlfKt~ 91 (113)
++||||||+
T Consensus 94 ~aiLlfKt~ 102 (102)
T 1yo3_A 94 VAILLFKSG 102 (102)
T ss_dssp EEEEEEECC
T ss_pred EEEEEEecC
Confidence 999999985
No 4
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=60.29 E-value=12 Score=21.13 Aligned_cols=34 Identities=12% Similarity=0.168 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhccccC
Q 033684 15 DELQSHVMELAYQALDLHEVSDCQSIAHYIKQKFDEAY 52 (113)
Q Consensus 15 ~emq~~ai~~a~~al~~~~~~~~kdiA~~IK~~lD~ky 52 (113)
+.++++|++..+.-+++.. .+|-..|+.+|.++.
T Consensus 10 e~~KqEIL~E~RkElqK~K----~EIIeAi~~El~~~~ 43 (45)
T 1use_A 10 QRVKQELLEEVKKELQKVK----EEIIEAFVQELRKRG 43 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhcC
Confidence 4588999999999999875 489999999998763
No 5
>3e9v_A Protein BTG2; B-cell translocation gene 2, structural genomics, PSI- 2, protein structure initiative; 1.70A {Homo sapiens} SCOP: d.370.1.1 PDB: 3dju_B 3djn_B
Probab=59.09 E-value=4.6 Score=27.29 Aligned_cols=46 Identities=17% Similarity=0.229 Sum_probs=28.0
Q ss_pred CCCHHHHHHHHHHHHHHHHh--cCCCChHHHHHHHHHhccccCCCceE
Q 033684 12 DMPDELQSHVMELAYQALDL--HEVSDCQSIAHYIKQKFDEAYRPAWH 57 (113)
Q Consensus 12 DM~~emq~~ai~~a~~al~~--~~~~~~kdiA~~IK~~lD~kyg~~WH 57 (113)
||-.|.+..+-=++.-+..+ .+.......++.|.+.|-.+|.++|+
T Consensus 1 ~M~~EI~~av~Fl~~~l~~~~~l~~~~v~~F~~~L~~~L~~~y~~HW~ 48 (120)
T 3e9v_A 1 DMLPEIAAAVGFLSSLLRTRGCVSEQRLKVFSGALQEALTEHYKHHWF 48 (120)
T ss_dssp CCHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred ChHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 45555544443334333333 22112345689999999999999998
No 6
>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A
Probab=48.19 E-value=31 Score=23.23 Aligned_cols=42 Identities=17% Similarity=-0.005 Sum_probs=27.5
Q ss_pred eeEEecCCcEEE-Ee-c-CCeEEEEEeeCCCCCchhhhhhhhhhcccc
Q 033684 66 SCITHLCGSLIF-FR-M-EMMEFLVFKDGKDCTESKEEAVGMLQKSQK 110 (113)
Q Consensus 66 s~vThe~~~~i~-F~-i-~~~~~LlfKt~~~~~~~~~~~~~~~~~~~~ 110 (113)
...|++.+.|++ +. . +++++|+.-.. .-|+.-+++.|+.+++
T Consensus 59 ~R~sv~~~~y~fH~~~~~~gl~~l~i~D~---~yp~rvAF~~L~~i~~ 103 (144)
T 3bw6_A 59 QRQSIEEGNYIGHVYARSEGICGVLITDK---EYPVRPAYTLLNKILD 103 (144)
T ss_dssp EEEEEEETTEEEEEEECTTSEEEEEEEET---TSCHHHHHHHHHHHHH
T ss_pred ceEEEEeCCEEEEEEEecCCEEEEEEECC---CCChhHHHHHHHHHHH
Confidence 344444445444 44 3 78888887654 4578889999988764
No 7
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=47.49 E-value=6.6 Score=26.03 Aligned_cols=35 Identities=17% Similarity=0.125 Sum_probs=26.4
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHhccccC-CCceEEEEeC
Q 033684 24 LAYQALDLHEVSDCQSIAHYIKQKFDEAY-RPAWHCVVGK 62 (113)
Q Consensus 24 ~a~~al~~~~~~~~kdiA~~IK~~lD~ky-g~~WHcIVG~ 62 (113)
.|+.||..++. |+++.|..-|+..- .+.|.++.++
T Consensus 56 eAr~AL~~~ng----Dl~~AI~~Lleg~~~~~~W~~~~kK 91 (104)
T 1wj7_A 56 ECVIALHDCNG----DVNRAINVLLEGNPDTHSWEMVGKK 91 (104)
T ss_dssp HHHHHHHHHTS----CHHHHHHHHHTCSSSCSSCSSCCCC
T ss_pred HHHHHHHHcCC----CHHHHHHHHHhCCCcCCceeeeccc
Confidence 47889998875 57777877777653 4679999876
No 8
>1eci_A Ectatomin; pore-forming toxins, ANT venoms; NMR {Ectatomma tuberculatum} SCOP: a.33.1.1
Probab=45.72 E-value=33 Score=18.17 Aligned_cols=32 Identities=19% Similarity=0.168 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhccc
Q 033684 15 DELQSHVMELAYQALDLHEVSDCQSIAHYIKQKFDE 50 (113)
Q Consensus 15 ~emq~~ai~~a~~al~~~~~~~~kdiA~~IK~~lD~ 50 (113)
...-+.++-....--+++. .+||.+||++.|+
T Consensus 5 kkiweticpt~~~~akkc~----g~iat~ik~~c~k 36 (37)
T 1eci_A 5 KKIWETVCPTVEPWAKKCS----GDIATYIKRECGK 36 (37)
T ss_dssp HHHHHHHHHHHHHHHHTBC----HHHHHHHHHHHHC
T ss_pred HHHHHHhCcchHHHHHHcc----chHHHHHHHHhcc
Confidence 3333444444444444443 6899999999876
No 9
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A
Probab=42.58 E-value=36 Score=23.87 Aligned_cols=42 Identities=19% Similarity=0.260 Sum_probs=26.7
Q ss_pred eeEEecCCcEEEEe-c-CCeEEEEEeeCCCCCchhhhhhhhhhcccc
Q 033684 66 SCITHLCGSLIFFR-M-EMMEFLVFKDGKDCTESKEEAVGMLQKSQK 110 (113)
Q Consensus 66 s~vThe~~~~i~F~-i-~~~~~LlfKt~~~~~~~~~~~~~~~~~~~~ 110 (113)
...|++.+.|.+.+ . +++++|+.-.. .-|+.-+++.|+.++.
T Consensus 51 ~r~s~~~~~y~fhy~~~~gl~~l~i~d~---~yp~r~af~fL~~i~~ 94 (196)
T 2nut_C 51 TRCTLEAGAMTFHYIIEQGVCYLVLCEA---AFPKKLAFAYLEDLHS 94 (196)
T ss_dssp SEEEEEETTEEEEEEEETTEEEEEEEET---TSCHHHHHHHHHHHHH
T ss_pred CeEEEEeCCEEEEEEeCCCeEEEEEEcC---CcchHHHHHHHHHHHH
Confidence 33444444444433 3 68888877654 4588889999987753
No 10
>1eci_B Ectatomin; pore-forming toxins, ANT venoms; NMR {Ectatomma tuberculatum} SCOP: a.33.1.1
Probab=37.10 E-value=13 Score=19.46 Aligned_cols=13 Identities=54% Similarity=0.618 Sum_probs=11.1
Q ss_pred HHHHHHHHHhccc
Q 033684 38 QSIAHYIKQKFDE 50 (113)
Q Consensus 38 kdiA~~IK~~lD~ 50 (113)
.+||.+||++.|+
T Consensus 22 g~iat~ik~~c~k 34 (34)
T 1eci_B 22 GSIATMIKKKCDK 34 (34)
T ss_dssp TTHHHHHHHHSCC
T ss_pred ccHHHHHHHHhCC
Confidence 5799999998875
No 11
>2bmo_A Oxygenase-alpha NBDO; nitrobenzene dioxygenase, nitroarene, rieske non-heme dioxygenase, substrate specificity iron- sulfur, metal-binding, NAD; 1.2A {Comamonas SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2bmq_A 2bmr_A* 2hmj_A 2hml_A* 2hmn_A* 1o7n_A 1ndo_A 1o7g_A* 1o7h_A 1o7m_A 1eg9_A 1o7p_A* 1o7w_A 1uuv_A 1uuw_A 2hmk_A* 2hmm_A* 2hmo_A*
Probab=34.97 E-value=45 Score=26.28 Aligned_cols=47 Identities=15% Similarity=0.306 Sum_probs=32.3
Q ss_pred HHHHhccccCCCceEEEEeCCCceeEEecCCcEEEEecCCeEEEEEeeCCC
Q 033684 43 YIKQKFDEAYRPAWHCVVGKDFGSCITHLCGSLIFFRMEMMEFLVFKDGKD 93 (113)
Q Consensus 43 ~IK~~lD~kyg~~WHcIVG~~Fgs~vThe~~~~i~F~i~~~~~LlfKt~~~ 93 (113)
....+++.-|...|++|.-. +.+. +++.++-+.+++..++|||..+.
T Consensus 24 ~~~~E~~~if~~~W~~v~~~---~el~-~~g~~~~~~~~~~~vvv~R~~~G 70 (447)
T 2bmo_A 24 LFQHELKTIFARNWLFLTHD---SLIP-SPGDYVKAKMGVDEVIVSRQNDG 70 (447)
T ss_dssp HHHHHHHHTTTTSCEEEEEG---GGSC-STTEEEEEEETTEEEEEEECTTS
T ss_pred HHHHHHHHhhccCCeEEeEH---HHCC-CCCCeEEEEECCeeEEEEECCCC
Confidence 34567777788999998543 1111 24567778889999999997543
No 12
>2gbw_A Biphenyl 2,3-dioxygenase alpha subunit; rieske oxygenase, oxidoreductase, non heme iron; 1.70A {Sphingobium yanoikuyae} PDB: 2gbx_A* 2ckf_A
Probab=33.69 E-value=48 Score=26.20 Aligned_cols=46 Identities=13% Similarity=0.199 Sum_probs=31.4
Q ss_pred HHHHhccccCCCceEEEEeCCCceeEEecCCcEEEEecCCeEEEEEeeCC
Q 033684 43 YIKQKFDEAYRPAWHCVVGKDFGSCITHLCGSLIFFRMEMMEFLVFKDGK 92 (113)
Q Consensus 43 ~IK~~lD~kyg~~WHcIVG~~Fgs~vThe~~~~i~F~i~~~~~LlfKt~~ 92 (113)
....+++.-|...|++|.-. +.+. +++.++-+.+++..++|||..+
T Consensus 25 ~~~~E~~~if~~~W~~v~~~---~el~-~~g~~~~~~~~~~~vvv~R~~~ 70 (454)
T 2gbw_A 25 VYALEIERIFSRAWLMLGHE---SLVP-KPGDFITTYMAEDKVILSHQSD 70 (454)
T ss_dssp HHHHHHHHTTTTSCEEEEEG---GGSC-STTEEEEEEETTEEEEEEECTT
T ss_pred HHHHHHHHHhhcCcEEEeEH---HHCC-CCCCeEEEEECCeEEEEEEcCC
Confidence 34567777788999997543 1111 2456777788999999999744
No 13
>3gzx_A Biphenyl dioxygenase subunit alpha; rieskie, non-heme iron, 2Fe-2S, aromatic hydroc catabolism, iron, iron-sulfur, metal-binding, NAD; HET: BNL MES; 1.58A {Comamonas testosteroni} PDB: 3gzy_A* 1wql_A 2xso_A 2xsh_A 2xrx_A* 2xr8_A* 2yfi_A 2yfj_A* 2yfl_A*
Probab=32.49 E-value=89 Score=25.06 Aligned_cols=47 Identities=9% Similarity=0.209 Sum_probs=33.3
Q ss_pred HHHHHhccccCCCceEEEEeCCCceeEEecCCcEEEEecCCeEEEEEeeCC
Q 033684 42 HYIKQKFDEAYRPAWHCVVGKDFGSCITHLCGSLIFFRMEMMEFLVFKDGK 92 (113)
Q Consensus 42 ~~IK~~lD~kyg~~WHcIVG~~Fgs~vThe~~~~i~F~i~~~~~LlfKt~~ 92 (113)
+....++++-|+..|++|.-. +.+ -+++.++-+.+++..++|||..+
T Consensus 44 ~~~~~E~~~if~~~W~~v~~~---~el-p~~G~~~~~~i~~~~vvv~R~~d 90 (457)
T 3gzx_A 44 DLYQLELERVFGRSWLMLGHE---THI-PKIGDYLTTYMGEDPVIMVRQKD 90 (457)
T ss_dssp HHHHHHHHHTTTTSCEEEEEG---GGS-CSTTEEEEEEETTEEEEEEECTT
T ss_pred HHHHHHHHHHHhcCCEEEeEH---HHc-CCCCCeEEEEECCEEEEEEECCC
Confidence 455678888899999998654 111 12455666788999999999754
No 14
>1uli_A Biphenyl dioxygenase large subunit; alpha3 BETA3 hetero hexamer, oxidoreductase; 2.20A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 1ulj_A* 3en1_A* 3eqq_A
Probab=31.20 E-value=56 Score=25.95 Aligned_cols=48 Identities=13% Similarity=0.245 Sum_probs=32.5
Q ss_pred HHHHHhccccCCCceEEEEeCCCceeEEecCCcEEEEecCCeEEEEEeeCCC
Q 033684 42 HYIKQKFDEAYRPAWHCVVGKDFGSCITHLCGSLIFFRMEMMEFLVFKDGKD 93 (113)
Q Consensus 42 ~~IK~~lD~kyg~~WHcIVG~~Fgs~vThe~~~~i~F~i~~~~~LlfKt~~~ 93 (113)
+....+++.-|...|++|.-. +.+. +++.++-+.+++..++|||..+.
T Consensus 42 ~~~~~E~~~if~~~W~~v~~~---~el~-~~g~~~~~~i~~~~vvv~R~~~G 89 (460)
T 1uli_A 42 ALYEQELERIFGRSWLLMGHE---TQIP-KAGDFMTNYMGEDPVMVVRQKNG 89 (460)
T ss_dssp HHHHHHHHHTTTTSCEEEEEG---GGSC-STTEEEEEEETTEEEEEEECTTS
T ss_pred HHHHHHHHHhhhcCceEEEEH---HHCC-CCCCeEEEEECCeEEEEEEcCCC
Confidence 344567777889999997543 1111 24556777889999999997543
No 15
>3uh9_A Metallothiol transferase FOSB 2; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol; HET: MSE; 1.60A {Bacillus anthracis}
Probab=31.10 E-value=96 Score=19.22 Aligned_cols=29 Identities=7% Similarity=-0.026 Sum_probs=19.6
Q ss_pred eEEecCCcEEEEecCCeEEEEEeeCCCCC
Q 033684 67 CITHLCGSLIFFRMEMMEFLVFKDGKDCT 95 (113)
Q Consensus 67 ~vThe~~~~i~F~i~~~~~LlfKt~~~~~ 95 (113)
.+..+.....+|..++..+.++..+...+
T Consensus 29 ~~~~~~~~~~~~~~~~~~l~l~~~~~~~~ 57 (145)
T 3uh9_A 29 KLLVKGRKLAYFDLNGLWIALNVEEDIPR 57 (145)
T ss_dssp EEEEECSSEEEEEETTEEEEEEECCSCCC
T ss_pred eEEecCCcEEEEEeCCeEEEEecCCCCCC
Confidence 33344566778888888888888765433
No 16
>1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} SCOP: c.1.27.1
Probab=30.46 E-value=1e+02 Score=23.12 Aligned_cols=50 Identities=14% Similarity=0.167 Sum_probs=37.2
Q ss_pred eCCCCHHHHHHHHHHHHHH-HHhc-----------CCCChHHHHHHHHHhccccCCCceEEEE-eC
Q 033684 10 ETDMPDELQSHVMELAYQA-LDLH-----------EVSDCQSIAHYIKQKFDEAYRPAWHCVV-GK 62 (113)
Q Consensus 10 ~sDM~~emq~~ai~~a~~a-l~~~-----------~~~~~kdiA~~IK~~lD~kyg~~WHcIV-G~ 62 (113)
..+||.+.+..+++.+.+. +.-. ...+..+..+.+++.||. |.|.+|| +|
T Consensus 108 ~i~l~~~~~~~~I~~~~~~G~~v~~EvG~k~~~~~~~~~~~~~I~~~~~~LeA---GA~~ViiEar 170 (251)
T 1qwg_A 108 SSDISLEERNNAIKRAKDNGFMVLTEVGKKMPDKDKQLTIDDRIKLINFDLDA---GADYVIIEGR 170 (251)
T ss_dssp SSCCCHHHHHHHHHHHHHTTCEEEEEECCSSHHHHTTCCHHHHHHHHHHHHHH---TCSEEEECCT
T ss_pred cccCCHHHHHHHHHHHHHCCCEEeeeccccCCcccCCCCHHHHHHHHHHHHHC---CCcEEEEeee
Confidence 4589999999999988776 2211 112357889999999998 8888988 44
No 17
>2z15_A Protein TOB1; human TOB1 protein, phosphorylation, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.30A {Homo sapiens} SCOP: d.370.1.1 PDB: 2d5r_B
Probab=30.35 E-value=10 Score=25.87 Aligned_cols=20 Identities=10% Similarity=0.378 Sum_probs=17.1
Q ss_pred HHHHHHHHHhccccCCCceE
Q 033684 38 QSIAHYIKQKFDEAYRPAWH 57 (113)
Q Consensus 38 kdiA~~IK~~lD~kyg~~WH 57 (113)
...++.|.+.|-.+|.++|.
T Consensus 33 ~~F~~~L~~~L~~~y~~HWy 52 (130)
T 2z15_A 33 NIFGEELERLLKKKYEGHWY 52 (130)
T ss_dssp HHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHhcCCCC
Confidence 45688899999999999994
No 18
>3vba_A Isopropylmalate/citramalate isomerase small subun; lyase, LEUD, cytosol; 2.00A {Methanocaldococcus jannaschii}
Probab=29.15 E-value=19 Score=25.66 Aligned_cols=18 Identities=33% Similarity=0.479 Sum_probs=12.8
Q ss_pred ccCCCceEEEEeCCCcee
Q 033684 50 EAYRPAWHCVVGKDFGSC 67 (113)
Q Consensus 50 ~kyg~~WHcIVG~~Fgs~ 67 (113)
.+|.+.+-+|.|+|||+=
T Consensus 49 ~~~~~g~IlVaG~NFG~G 66 (176)
T 3vba_A 49 KKVKPGDIIVGGKNFGCG 66 (176)
T ss_dssp HHCCTTCEEEECTTBTBS
T ss_pred HhcCCCCEEEeCCCccCC
Confidence 345566778888899863
No 19
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=28.57 E-value=86 Score=18.78 Aligned_cols=29 Identities=14% Similarity=0.175 Sum_probs=23.1
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHhccccC
Q 033684 23 ELAYQALDLHEVSDCQSIAHYIKQKFDEAY 52 (113)
Q Consensus 23 ~~a~~al~~~~~~~~kdiA~~IK~~lD~ky 52 (113)
+.|..||+..+. |.+..|++|-...|-.-
T Consensus 34 ~qA~kALKat~~-NvErAaDWLFSH~D~~~ 62 (63)
T 1wgn_A 34 ECVLRAMKKKGE-NIEQILDYLFAHSGPSS 62 (63)
T ss_dssp HHHHHHHHHHCS-CHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHhCCCCCC
Confidence 368899998775 47889999999888653
No 20
>2b1x_A Naphthalene dioxygenase large subunit; rieske non-heme iron oxygenase, oxidoreductase; 2.00A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2b24_A
Probab=27.77 E-value=1.1e+02 Score=24.16 Aligned_cols=46 Identities=17% Similarity=0.258 Sum_probs=31.2
Q ss_pred HHHHhccccCCCceEEEEeCCCceeEEecCCcEEEEecCCeEEEEEeeCC
Q 033684 43 YIKQKFDEAYRPAWHCVVGKDFGSCITHLCGSLIFFRMEMMEFLVFKDGK 92 (113)
Q Consensus 43 ~IK~~lD~kyg~~WHcIVG~~Fgs~vThe~~~~i~F~i~~~~~LlfKt~~ 92 (113)
....+++.-|...|++|.-. +.+. +++.++-+.+++..++|||..+
T Consensus 33 ~~~~E~~~if~~~W~~v~~~---~el~-~~g~~~~~~~~g~~vvv~R~~~ 78 (470)
T 2b1x_A 33 VHDVERERIFGHAWVFLAHE---SEIP-ERGDYVVRYISEDQFIVCRDEG 78 (470)
T ss_dssp HHHHHHHHTTTTSCEEEEEG---GGSC-STTEEEEEEETTEEEEEEECTT
T ss_pred HHHHHHHHHhhcCCeEeeeH---HHCC-CCCCeEEEEECCeEEEEEEcCC
Confidence 34456677788999997543 1111 2356777788999999999744
No 21
>3vca_A Ring-hydroxylating dioxygenase; rieske-type, mononuclear non-heme iron, N-demethylase, oxido; 1.59A {Sinorhizobium meliloti} PDB: 3vcp_A
Probab=27.65 E-value=1.1e+02 Score=24.11 Aligned_cols=48 Identities=13% Similarity=0.263 Sum_probs=34.4
Q ss_pred HHHHHhccccCCCceEEEEeCCCceeEEecCCcEEEEecCCeEEEEEeeCCC
Q 033684 42 HYIKQKFDEAYRPAWHCVVGKDFGSCITHLCGSLIFFRMEMMEFLVFKDGKD 93 (113)
Q Consensus 42 ~~IK~~lD~kyg~~WHcIVG~~Fgs~vThe~~~~i~F~i~~~~~LlfKt~~~ 93 (113)
+....+++.-|...|++|.-. +.+. +++.++-+.+++..++|||..++
T Consensus 30 ~~~~~E~~~if~~~W~~v~~~---~elp-~~G~~~~~~i~g~~vvv~R~~dG 77 (412)
T 3vca_A 30 EVYALDLQHIFYKQWLYAVPV---CQLA-KAGSYTTLRVGAYEVVIVRSRDG 77 (412)
T ss_dssp HHHHHHHHHTTTTSCEEEEEG---GGGC-STTEEEEEEETTEEEEEEECTTS
T ss_pred HHHHHHHHHHHhccCEEEEEH---HHCC-CCCCeEEEEECCEEEEEEEcCCC
Confidence 445677888899999998654 1111 24667778899999999997543
No 22
>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}
Probab=27.28 E-value=1e+02 Score=21.85 Aligned_cols=42 Identities=14% Similarity=0.093 Sum_probs=27.9
Q ss_pred eeEEecCCcEEEE-ec--CCeEEEEEeeCCCCCchhhhhhhhhhcccc
Q 033684 66 SCITHLCGSLIFF-RM--EMMEFLVFKDGKDCTESKEEAVGMLQKSQK 110 (113)
Q Consensus 66 s~vThe~~~~i~F-~i--~~~~~LlfKt~~~~~~~~~~~~~~~~~~~~ 110 (113)
...|++.+.|.+. ++ +++++|+--.. .-|+.-+++.|+.+++
T Consensus 56 ~r~s~~~~~y~fH~y~~~~gl~yl~itd~---~yp~r~AF~fL~ei~~ 100 (199)
T 3kyq_A 56 SRASVKEQEYLCHVYVRSDSLAGVVIADS---EYPSRVAFTLLEKVLD 100 (199)
T ss_dssp EEEEEECSSEEEEEEECTTSEEEEEEEET---TSCHHHHHHHHHHHHH
T ss_pred CeEEEEeCCEEEEEEEecCCEEEEEEECC---CCCHHHHHHHHHHHHH
Confidence 4455555555544 44 67888877655 4478888999988753
No 23
>1wyo_A Protein EB3, microtubule-associated protein RP/EB family member 3; CH domain, microtubule-binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.42 E-value=87 Score=21.90 Aligned_cols=44 Identities=18% Similarity=0.293 Sum_probs=33.3
Q ss_pred eCCCCHHHHHHHHHHHHHHHHhcCCC--------------ChHHHHHHHHHhccccCCC
Q 033684 10 ETDMPDELQSHVMELAYQALDLHEVS--------------DCQSIAHYIKQKFDEAYRP 54 (113)
Q Consensus 10 ~sDM~~emq~~ai~~a~~al~~~~~~--------------~~kdiA~~IK~~lD~kyg~ 54 (113)
.+.++-++.+.+ .+.++|++++..+ |.-+.++.+|+.+|..|++
T Consensus 71 ~a~~e~e~~~N~-k~lQ~af~k~gV~k~ipV~kLvkgk~qdNlEFlqWfk~f~d~n~~~ 128 (159)
T 1wyo_A 71 QAKLEHEYIHNF-KVLQAAFKKMGVDKIIPVEKLVKGKFQDNFEFIQWFKKFFDANYDG 128 (159)
T ss_dssp TCCSSHHHHHHH-HHHHHHHHHHTCCCCCCHHHHTTTCSHHHHHHHHHHHHHHHTTCCS
T ss_pred CCCChHHHHHHH-HHHHHHHHHcCCCCccCHHHHhcCCchhHHHHHHHHHHHHHHcCCC
Confidence 566666666665 6778888888642 2367899999999999975
No 24
>2pkp_A Homoaconitase small subunit; beta barrel, amino-acid biosynthesis, leucine biosynthesis, structural genomics, NPPSFA; 2.10A {Methanocaldococcus jannaschii}
Probab=24.74 E-value=26 Score=24.68 Aligned_cols=16 Identities=25% Similarity=0.420 Sum_probs=12.3
Q ss_pred cCCCceEEEEeCCCce
Q 033684 51 AYRPAWHCVVGKDFGS 66 (113)
Q Consensus 51 kyg~~WHcIVG~~Fgs 66 (113)
++.+.|-+|.|+|||+
T Consensus 48 ~~~~~~iivaG~nfG~ 63 (170)
T 2pkp_A 48 KVKEGDVIVAGENFGC 63 (170)
T ss_dssp HCCTTCEEEECTTBTB
T ss_pred hCCCCCEEEecCCCCC
Confidence 3456788888999985
No 25
>2hcu_A 3-isopropylmalate dehydratase small subunit; beta barrel, lyase; 2.10A {Streptococcus mutans}
Probab=23.90 E-value=31 Score=25.30 Aligned_cols=16 Identities=38% Similarity=0.719 Sum_probs=12.9
Q ss_pred cCCCceEEEEeCCCce
Q 033684 51 AYRPAWHCVVGKDFGS 66 (113)
Q Consensus 51 kyg~~WHcIVG~~Fgs 66 (113)
+|.+..-+|+|+||||
T Consensus 82 ~~~~~~IlvaG~NfGc 97 (213)
T 2hcu_A 82 EYREASILITGDNFGA 97 (213)
T ss_dssp GGTTCCEEEECSSBTC
T ss_pred hhcCCcEEEecCCCCC
Confidence 4667788888999996
No 26
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=23.52 E-value=76 Score=19.20 Aligned_cols=30 Identities=13% Similarity=0.348 Sum_probs=20.7
Q ss_pred CCHHHHHHHHHHHHHHHHh---cCCCChHHHHHH
Q 033684 13 MPDELQSHVMELAYQALDL---HEVSDCQSIAHY 43 (113)
Q Consensus 13 M~~emq~~ai~~a~~al~~---~~~~~~kdiA~~ 43 (113)
|++..++.|++...+-++. ++. .-.|||+.
T Consensus 1 ~~~~r~~~IL~~I~~~i~~~~g~~p-sv~EIa~~ 33 (77)
T 2jt1_A 1 MSESIVTKIISIVQERQNMDDGAPV-KTRDIADA 33 (77)
T ss_dssp CCCTHHHHHHHHHHHHHHHHTTSCE-EHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhccCCCc-CHHHHHHH
Confidence 7778888898888887766 332 24566654
No 27
>3n0q_A Putative aromatic-ring hydroxylating dioxygenase; rieske [2Fe-2S] domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.80A {Ruegeria SP}
Probab=23.36 E-value=1.6e+02 Score=23.19 Aligned_cols=48 Identities=8% Similarity=0.283 Sum_probs=34.2
Q ss_pred HHHHHhccccCCCceEEEEeCCCceeEEecCCcEEEEecCCeEEEEEeeCCC
Q 033684 42 HYIKQKFDEAYRPAWHCVVGKDFGSCITHLCGSLIFFRMEMMEFLVFKDGKD 93 (113)
Q Consensus 42 ~~IK~~lD~kyg~~WHcIVG~~Fgs~vThe~~~~i~F~i~~~~~LlfKt~~~ 93 (113)
+....+++.-|...|++|.-. +.+. +++.++-+.+++..++|||..++
T Consensus 28 ~~~~~E~~~if~~~W~~v~~~---~elp-~~G~~~~~~i~g~~vvv~R~~dG 75 (409)
T 3n0q_A 28 EVFQTDLQEIFYKEWLFAIPA---CELD-KPGSYVTHQVGNYNVIIVRGADN 75 (409)
T ss_dssp HHHHHHHHHTTTTSCEEEEEG---GGSC-STTEEEEEEETTEEEEEEECTTS
T ss_pred HHHHHHHHHHHhcCCEEEEEH---HHCC-CCCCeEEEEECCEEEEEEEcCCC
Confidence 445667778899999998754 1111 24567778889999999997543
No 28
>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens}
Probab=22.20 E-value=1.4e+02 Score=20.78 Aligned_cols=58 Identities=17% Similarity=0.288 Sum_probs=35.0
Q ss_pred hHHHHHHHHHhccccCCCceEEEEeCCCceeEEecCCcEEE-Eec-CCeEEEEEeeCCCCCchhhhhhhhhhcccc
Q 033684 37 CQSIAHYIKQKFDEAYRPAWHCVVGKDFGSCITHLCGSLIF-FRM-EMMEFLVFKDGKDCTESKEEAVGMLQKSQK 110 (113)
Q Consensus 37 ~kdiA~~IK~~lD~kyg~~WHcIVG~~Fgs~vThe~~~~i~-F~i-~~~~~LlfKt~~~~~~~~~~~~~~~~~~~~ 110 (113)
...+|+.|=+.+... +...|++.+.+.+ |.+ +++++|.--. ..-|+.-+|+-|+.+++
T Consensus 78 f~~va~~iL~kip~~-------------~~r~t~~~~~y~fHyl~~dgl~yl~i~D---~~~~rr~aF~FLedI~~ 137 (173)
T 4afi_A 78 FLEVTEQILAKIPSE-------------NNKLTYSHGNYLFHYICQDRIVYLCITD---DDFERSRAFSFLNEVKK 137 (173)
T ss_dssp HHHHHHHHHTTSCSS-------------SEEEEEEETTEEEEEEEETTEEEEEEEE---TTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCC-------------CCeEEEEECCEEEEEEEECCEEEEEEEC---CccChhHHHHHHHHHHH
Confidence 456666665555441 2334444444444 333 6777776654 45588899999988764
No 29
>3kyz_A Sensor protein PFES; APC37897.4, the sensor domain of two-component sensor PFES, pseudomonas aeruginosa PA01, structural genomics, PSI-2; 1.50A {Pseudomonas aeruginosa}
Probab=21.77 E-value=1.1e+02 Score=20.61 Aligned_cols=56 Identities=14% Similarity=0.127 Sum_probs=37.5
Q ss_pred ceEEeCCCCHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhccccCCCceEEEEeCC
Q 033684 6 PVVQETDMPDELQSHVMELAYQALDLHEVSDCQSIAHYIKQKFDEAYRPAWHCVVGKD 63 (113)
Q Consensus 6 ~~I~~sDM~~emq~~ai~~a~~al~~~~~~~~kdiA~~IK~~lD~kyg~~WHcIVG~~ 63 (113)
.+-..+-+|++-|+.+.+.|.+|=......+...+++.++.-= .+ .++|-.||+.+
T Consensus 8 ~e~~~~~l~~~~q~~L~~~A~~Ae~~~~~g~~~~L~~W~~~l~-~~-e~~w~~Vl~~~ 63 (125)
T 3kyz_A 8 VERSTYFLAPADRHYLADYARQAEDAWRREGAAGAERFRKELS-AK-EDTWVALVGPH 63 (125)
T ss_dssp -----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-HTSCEEEECTT
T ss_pred HHHHHccCCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hh-cCEEEEEecCC
Confidence 3445677899999999999999988775433456676666521 22 37899999863
No 30
>2b61_A Homoserine O-acetyltransferase; acyl-enzyme, aspartate pathway, coenzyme A, structure-functi studies, alpha-beta hydrolase fold; 1.65A {Haemophilus influenzae} SCOP: c.69.1.40
Probab=21.14 E-value=35 Score=24.49 Aligned_cols=34 Identities=18% Similarity=0.281 Sum_probs=24.9
Q ss_pred hHHHHHHHHHhccccCCCceEEEEeCCCceeEEe
Q 033684 37 CQSIAHYIKQKFDEAYRPAWHCVVGKDFGSCITH 70 (113)
Q Consensus 37 ~kdiA~~IK~~lD~kyg~~WHcIVG~~Fgs~vTh 70 (113)
..++|+.|...++..-....+++||.|+|+.+..
T Consensus 136 ~~~~~~~l~~~l~~l~~~~~~~lvGhS~Gg~ia~ 169 (377)
T 2b61_A 136 VQDIVKVQKALLEHLGISHLKAIIGGSFGGMQAN 169 (377)
T ss_dssp HHHHHHHHHHHHHHTTCCCEEEEEEETHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcceeEEEEEChhHHHHH
Confidence 5677777777776543356677999999988653
No 31
>3k6g_A Telomeric repeat-binding factor 2-interacting Pro; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=20.31 E-value=45 Score=22.12 Aligned_cols=43 Identities=7% Similarity=0.215 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChHHH--------------HHHHHHhccccCCCceEE
Q 033684 15 DELQSHVMELAYQALDLHEVSDCQSI--------------AHYIKQKFDEAYRPAWHC 58 (113)
Q Consensus 15 ~emq~~ai~~a~~al~~~~~~~~kdi--------------A~~IK~~lD~kyg~~WHc 58 (113)
+.--..++++..+++.+++.+ .-.| ..++-.-.-..-+|.|||
T Consensus 7 ~~~vg~~~~~i~~lMeef~~D-L~sVTqAlLK~SGel~at~~fL~~~~r~dg~PiWsr 63 (111)
T 3k6g_A 7 QPEVGAAIKIIRQLMEKFNLD-LSTVTQAFLKNSGELEATSAFLASGQRADGYPIWSR 63 (111)
T ss_dssp HHHHHHHHHHHHHHHHHTTCC-HHHHHHHHHHTTTCHHHHHHHHHHSSCTTSCCCCCH
T ss_pred CCcccHHHHHHHHHHHHHhhh-HHHHHHHHHHccccHHHHHHHHhCCCcCCCCcceee
Confidence 334445566666777766542 3333 333433332345688987
Done!