BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033685
(113 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GME|A Chain A, Crystal Structure And Assembly Of An Eukaryotic Small Heat
Shock Protein
pdb|1GME|B Chain B, Crystal Structure And Assembly Of An Eukaryotic Small Heat
Shock Protein
pdb|1GME|C Chain C, Crystal Structure And Assembly Of An Eukaryotic Small Heat
Shock Protein
pdb|1GME|D Chain D, Crystal Structure And Assembly Of An Eukaryotic Small Heat
Shock Protein
Length = 151
Score = 97.4 bits (241), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/106 (47%), Positives = 63/106 (59%)
Query: 8 INLTETPEAHVFKTDLPGLXXXXXXXXXXXXXXLQISGQRNIEKEDKNDTWHRVERSSGM 67
++ ETPEAHVFK DLPG+ L +SG+R EKEDKND WHRVERSSG
Sbjct: 46 MDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGK 105
Query: 68 FSRRFRLPENVKMDQIKASMESGXXXXXXXXXXXXXXXXXAIEISG 113
F RRFRL E+ K++++KA +E+G AI+ISG
Sbjct: 106 FVRRFRLLEDAKVEEVKAGLENGVLTVTVPKAEVKKPEVKAIQISG 151
>pdb|2BYU|A Chain A, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|B Chain B, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|C Chain C, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|D Chain D, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|E Chain E, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|F Chain F, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|G Chain G, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|H Chain H, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|I Chain I, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|J Chain J, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|K Chain K, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|L Chain L, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
Length = 101
Score = 94.4 bits (233), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 45/79 (56%), Positives = 55/79 (69%)
Query: 12 ETPEAHVFKTDLPGLXXXXXXXXXXXXXXLQISGQRNIEKEDKNDTWHRVERSSGMFSRR 71
ETPEAHVFK DLPG+ L +SG+R EKEDKND WHRVERSSG F RR
Sbjct: 8 ETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRR 67
Query: 72 FRLPENVKMDQIKASMESG 90
FRL E+ K++++KA +E+G
Sbjct: 68 FRLLEDAKVEEVKAGLENG 86
>pdb|2H50|A Chain A, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|B Chain B, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|C Chain C, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|D Chain D, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|E Chain E, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|F Chain F, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|G Chain G, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|H Chain H, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|I Chain I, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|J Chain J, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|K Chain K, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|L Chain L, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|M Chain M, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|N Chain N, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|O Chain O, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|P Chain P, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|Q Chain Q, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|R Chain R, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|S Chain S, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|T Chain T, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|U Chain U, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|V Chain V, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|W Chain W, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|X Chain X, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|A Chain A, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|B Chain B, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|C Chain C, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|D Chain D, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|E Chain E, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|F Chain F, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|G Chain G, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|H Chain H, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|I Chain I, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|J Chain J, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|K Chain K, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|L Chain L, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|M Chain M, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|N Chain N, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|O Chain O, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|P Chain P, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|Q Chain Q, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|R Chain R, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|S Chain S, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|T Chain T, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|U Chain U, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|V Chain V, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|W Chain W, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|X Chain X, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
Length = 93
Score = 94.0 bits (232), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 45/83 (54%), Positives = 57/83 (68%)
Query: 8 INLTETPEAHVFKTDLPGLXXXXXXXXXXXXXXLQISGQRNIEKEDKNDTWHRVERSSGM 67
++ ETPEAHVFK DLPG+ L +SG+R EKEDKND WHRVERSSG
Sbjct: 3 MDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGK 62
Query: 68 FSRRFRLPENVKMDQIKASMESG 90
F RRFRL E+ K++++KA +E+G
Sbjct: 63 FVRRFRLLEDAKVEEVKAGLENG 85
>pdb|3GT6|A Chain A, Crystal Structure Of The Hspa From Xanthomonas
Axonopodis
pdb|3GT6|B Chain B, Crystal Structure Of The Hspa From Xanthomonas
Axonopodis
pdb|3GUF|A Chain A, Crystal Structure Of The Hspa From Xanthomonas
Axonopodis
pdb|3GUF|B Chain B, Crystal Structure Of The Hspa From Xanthomonas
Axonopodis
Length = 103
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 8 INLTETPEAHVFKTDLPGLXXXXXXXXXXXXXXLQISGQRNIEKEDKNDTWHRVERSSGM 67
+++ E V DLPG+ L I G+R E + + + R+ER G
Sbjct: 10 VDIKEEVNHFVLYADLPGIDPSQIEVQMDKGI-LSIRGERKSESSTETERFSRIERRYGS 68
Query: 68 FSRRFRLPENVKMDQIKASMESG 90
F RRF LP++ D I A+ +G
Sbjct: 69 FHRRFALPDSADADGITAAGRNG 91
>pdb|3GLA|A Chain A, Crystal Structure Of The Hspa From Xanthomonas
Axonopodis
pdb|3GLA|B Chain B, Crystal Structure Of The Hspa From Xanthomonas
Axonopodis
Length = 100
Score = 42.7 bits (99), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 8 INLTETPEAHVFKTDLPGLXXXXXXXXXXXXXXLQISGQRNIEKEDKNDTWHRVERSSGM 67
+++ E V DLPG+ L I G+R E + + + R+ER G
Sbjct: 7 VDIKEEVNHFVLYADLPGIDPSQIEVQMDKGI-LSIRGERKSESSTETERFSRIERRYGS 65
Query: 68 FSRRFRLPENVKMDQIKASMESG 90
F RRF LP++ D I A+ +G
Sbjct: 66 FHRRFALPDSADADGITAAGRNG 88
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,288,853
Number of Sequences: 62578
Number of extensions: 61041
Number of successful extensions: 131
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 126
Number of HSP's gapped (non-prelim): 5
length of query: 113
length of database: 14,973,337
effective HSP length: 77
effective length of query: 36
effective length of database: 10,154,831
effective search space: 365573916
effective search space used: 365573916
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)