Query 033685
Match_columns 113
No_of_seqs 112 out of 1111
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 05:07:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033685.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033685hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0071 IbpA Molecular chapero 100.0 1.4E-29 3.1E-34 166.8 14.0 108 4-112 39-146 (146)
2 PRK11597 heat shock chaperone 100.0 1.3E-29 2.8E-34 165.8 13.4 104 5-113 32-136 (142)
3 PRK10743 heat shock protein Ib 100.0 2.1E-29 4.5E-34 164.2 13.3 102 6-112 35-137 (137)
4 cd06472 ACD_ScHsp26_like Alpha 100.0 1.6E-28 3.4E-33 150.5 12.2 92 7-98 1-92 (92)
5 PF00011 HSP20: Hsp20/alpha cr 100.0 4.5E-27 9.8E-32 146.1 13.2 101 9-112 1-102 (102)
6 cd06471 ACD_LpsHSP_like Group 99.9 1.5E-26 3.3E-31 141.8 11.6 91 6-98 1-93 (93)
7 cd06470 ACD_IbpA-B_like Alpha- 99.9 5E-26 1.1E-30 138.9 12.4 89 6-98 1-90 (90)
8 cd06497 ACD_alphaA-crystallin_ 99.9 2.9E-24 6.2E-29 130.1 11.2 82 9-98 4-86 (86)
9 cd06498 ACD_alphaB-crystallin_ 99.9 1.8E-23 3.9E-28 126.1 11.0 82 10-99 2-84 (84)
10 cd06478 ACD_HspB4-5-6 Alpha-cr 99.9 2.1E-23 4.6E-28 125.5 11.3 82 9-98 1-83 (83)
11 cd06479 ACD_HspB7_like Alpha c 99.9 1.2E-23 2.6E-28 125.9 9.6 79 9-98 2-81 (81)
12 cd06464 ACD_sHsps-like Alpha-c 99.9 1.5E-22 3.2E-27 121.9 11.6 88 9-98 1-88 (88)
13 cd06481 ACD_HspB9_like Alpha c 99.9 1E-22 2.2E-27 123.5 10.6 83 12-98 4-87 (87)
14 cd06476 ACD_HspB2_like Alpha c 99.9 1.5E-22 3.3E-27 121.8 11.1 81 10-98 2-83 (83)
15 cd06475 ACD_HspB1_like Alpha c 99.9 1.6E-22 3.4E-27 122.5 10.4 82 8-97 3-85 (86)
16 cd06482 ACD_HspB10 Alpha cryst 99.9 9.2E-22 2E-26 119.1 10.3 80 13-97 6-86 (87)
17 cd06526 metazoan_ACD Alpha-cry 99.9 9.6E-22 2.1E-26 118.3 9.2 78 13-98 5-83 (83)
18 cd06477 ACD_HspB3_Like Alpha c 99.9 3.2E-21 6.9E-26 115.9 10.8 79 11-97 3-82 (83)
19 KOG0710 Molecular chaperone (s 99.8 7.8E-20 1.7E-24 125.6 7.1 110 4-113 83-196 (196)
20 cd06480 ACD_HspB8_like Alpha-c 99.8 3.3E-18 7.3E-23 104.2 9.9 81 9-97 9-90 (91)
21 KOG3591 Alpha crystallins [Pos 99.7 1E-16 2.2E-21 108.1 11.9 98 7-112 64-162 (173)
22 cd00298 ACD_sHsps_p23-like Thi 99.7 1.4E-15 3.1E-20 88.6 9.9 80 10-98 1-80 (80)
23 cd06469 p23_DYX1C1_like p23_li 99.5 8.9E-13 1.9E-17 77.8 9.0 71 10-101 1-71 (78)
24 PF05455 GvpH: GvpH; InterPro 99.2 1.6E-10 3.5E-15 77.7 10.4 79 5-103 91-172 (177)
25 cd06463 p23_like Proteins cont 99.2 1.8E-10 3.9E-15 68.0 9.5 76 10-101 1-76 (84)
26 cd06466 p23_CS_SGT1_like p23_l 99.0 3.4E-09 7.4E-14 63.1 8.0 77 9-101 1-77 (84)
27 PF04969 CS: CS domain; Inter 98.8 2.2E-07 4.9E-12 54.1 11.2 77 6-98 1-79 (79)
28 cd06465 p23_hB-ind1_like p23_l 98.6 1.2E-06 2.6E-11 54.8 10.1 78 6-100 1-78 (108)
29 cd06489 p23_CS_hSgt1_like p23_ 98.5 3E-06 6.6E-11 50.5 9.0 77 9-101 1-77 (84)
30 PF08190 PIH1: pre-RNA process 98.5 1.7E-06 3.7E-11 63.3 9.1 65 14-97 260-327 (328)
31 cd06488 p23_melusin_like p23_l 98.2 4E-05 8.7E-10 46.1 9.9 79 7-101 2-80 (87)
32 cd06468 p23_CacyBP p23_like do 98.2 5E-05 1.1E-09 45.9 10.1 79 7-101 3-85 (92)
33 cd06467 p23_NUDC_like p23_like 98.0 9.9E-05 2.1E-09 43.8 8.8 74 9-101 2-77 (85)
34 cd00237 p23 p23 binds heat sho 98.0 0.00022 4.8E-09 44.6 10.4 79 5-101 1-79 (106)
35 cd06493 p23_NUDCD1_like p23_NU 97.9 0.00031 6.7E-09 42.0 9.1 75 8-101 1-77 (85)
36 cd06494 p23_NUDCD2_like p23-li 97.7 0.0014 2.9E-08 40.1 10.2 78 5-102 5-84 (93)
37 PLN03088 SGT1, suppressor of 97.5 0.0016 3.4E-08 48.6 9.4 80 6-101 157-236 (356)
38 KOG1309 Suppressor of G2 allel 97.4 0.00095 2.1E-08 45.3 6.9 79 5-99 3-81 (196)
39 cd06490 p23_NCB5OR p23_like do 97.3 0.013 2.9E-07 35.1 10.4 76 8-101 1-80 (87)
40 cd06492 p23_mNUDC_like p23-lik 96.8 0.029 6.2E-07 33.7 8.8 74 9-101 2-79 (87)
41 cd06495 p23_NUDCD3_like p23-li 95.8 0.22 4.8E-06 30.8 9.8 79 6-100 5-86 (102)
42 PF14913 DPCD: DPCD protein fa 93.8 1 2.2E-05 31.0 8.5 78 5-100 86-170 (194)
43 KOG1667 Zn2+-binding protein M 90.0 3.1 6.7E-05 30.2 7.6 81 7-102 216-296 (320)
44 cd06482 ACD_HspB10 Alpha cryst 89.2 1.1 2.4E-05 26.8 4.4 33 67-100 9-41 (87)
45 KOG3158 HSP90 co-chaperone p23 88.8 3 6.4E-05 28.4 6.5 80 3-100 5-84 (180)
46 cd06477 ACD_HspB3_Like Alpha c 88.0 1.3 2.7E-05 26.4 4.0 33 67-100 8-40 (83)
47 cd06478 ACD_HspB4-5-6 Alpha-cr 87.8 1.6 3.4E-05 25.7 4.3 32 67-99 8-39 (83)
48 cd06470 ACD_IbpA-B_like Alpha- 87.5 3.9 8.5E-05 24.3 6.0 36 66-102 11-46 (90)
49 cd06497 ACD_alphaA-crystallin_ 87.2 1.6 3.4E-05 26.0 4.1 32 67-99 11-42 (86)
50 cd06476 ACD_HspB2_like Alpha c 87.2 2.5 5.4E-05 25.0 4.9 32 67-99 8-39 (83)
51 cd06479 ACD_HspB7_like Alpha c 85.7 2.6 5.5E-05 24.9 4.4 33 67-100 9-41 (81)
52 KOG2265 Nuclear distribution p 85.6 9.3 0.0002 26.1 7.5 77 6-101 19-97 (179)
53 cd06498 ACD_alphaB-crystallin_ 84.4 2.6 5.7E-05 24.9 4.1 32 67-99 8-39 (84)
54 cd06471 ACD_LpsHSP_like Group 84.0 3.5 7.5E-05 24.5 4.6 33 67-100 11-43 (93)
55 cd06526 metazoan_ACD Alpha-cry 83.7 3 6.5E-05 24.3 4.1 34 67-101 8-41 (83)
56 PF13349 DUF4097: Domain of un 82.6 11 0.00023 24.4 9.4 81 7-95 67-147 (166)
57 cd06475 ACD_HspB1_like Alpha c 82.5 3.6 7.8E-05 24.4 4.2 33 67-100 11-43 (86)
58 PRK10743 heat shock protein Ib 82.4 4.5 9.8E-05 26.3 4.9 34 66-100 45-78 (137)
59 cd06481 ACD_HspB9_like Alpha c 82.3 4.5 9.7E-05 24.1 4.5 33 67-100 8-40 (87)
60 PF08308 PEGA: PEGA domain; I 81.9 6.9 0.00015 21.9 5.1 41 7-47 26-67 (71)
61 PF00011 HSP20: Hsp20/alpha cr 81.4 5.3 0.00012 23.9 4.8 33 66-99 7-39 (102)
62 cd06480 ACD_HspB8_like Alpha-c 80.4 5.5 0.00012 24.1 4.5 32 15-46 58-90 (91)
63 cd06464 ACD_sHsps-like Alpha-c 79.3 7 0.00015 22.3 4.7 34 67-101 8-41 (88)
64 cd06472 ACD_ScHsp26_like Alpha 78.9 8.8 0.00019 22.7 5.1 33 67-100 10-43 (92)
65 PF12992 DUF3876: Domain of un 76.6 12 0.00025 22.9 5.1 39 5-44 25-68 (95)
66 PF14814 UB2H: Bifunctional tr 76.3 7.8 0.00017 22.9 4.2 43 54-96 29-73 (85)
67 PRK11597 heat shock chaperone 75.1 16 0.00034 24.0 5.8 33 67-100 44-76 (142)
68 KOG3591 Alpha crystallins [Pos 74.0 5.7 0.00012 26.9 3.6 36 17-52 117-153 (173)
69 COG0071 IbpA Molecular chapero 72.0 13 0.00028 24.1 4.9 33 67-100 51-83 (146)
70 COG5091 SGT1 Suppressor of G2 71.3 2.8 6E-05 30.8 1.7 78 7-99 178-255 (368)
71 cd06467 p23_NUDC_like p23_like 71.3 12 0.00027 21.5 4.3 31 67-97 9-39 (85)
72 KOG3247 Uncharacterized conser 68.1 2.6 5.7E-05 32.5 1.0 78 4-102 2-82 (466)
73 KOG3260 Calcyclin-binding prot 67.2 35 0.00076 23.6 6.2 77 8-100 77-154 (224)
74 PF04972 BON: BON domain; Int 66.2 18 0.00039 19.6 4.1 26 24-50 12-37 (64)
75 cd06469 p23_DYX1C1_like p23_li 65.6 22 0.00048 20.0 5.0 33 15-48 36-69 (78)
76 PF01954 DUF104: Protein of un 60.1 11 0.00023 21.1 2.3 17 81-97 3-19 (60)
77 PRK05518 rpl6p 50S ribosomal p 60.0 53 0.0011 22.4 6.8 46 27-97 12-57 (180)
78 cd07696 IgC_CH3 CH3 domain (th 56.3 42 0.00091 20.1 6.9 40 1-40 1-41 (96)
79 TIGR03654 L6_bact ribosomal pr 54.1 66 0.0014 21.7 6.7 44 28-97 11-54 (175)
80 PRK14290 chaperone protein Dna 53.1 97 0.0021 23.4 8.0 30 70-99 276-305 (365)
81 TIGR03653 arch_L6P archaeal ri 52.9 69 0.0015 21.6 7.0 45 28-97 7-51 (170)
82 CHL00140 rpl6 ribosomal protei 49.8 79 0.0017 21.4 6.4 44 28-97 12-55 (178)
83 PRK05498 rplF 50S ribosomal pr 49.8 79 0.0017 21.4 6.4 44 28-97 12-55 (178)
84 PRK10568 periplasmic protein; 49.3 52 0.0011 22.7 4.8 25 24-49 73-97 (203)
85 cd00503 Frataxin Frataxin is a 48.5 23 0.00051 21.9 2.7 17 81-97 28-44 (105)
86 PF01491 Frataxin_Cyay: Fratax 48.2 29 0.00064 21.5 3.1 19 81-99 30-48 (109)
87 cd06494 p23_NUDCD2_like p23-li 46.6 64 0.0014 19.4 5.7 31 66-96 15-45 (93)
88 PRK00446 cyaY frataxin-like pr 46.6 23 0.0005 22.0 2.5 17 83-99 29-45 (105)
89 TIGR03421 FeS_CyaY iron donor 46.5 22 0.00048 21.9 2.4 17 82-98 26-42 (102)
90 PTZ00027 60S ribosomal protein 45.1 1E+02 0.0022 21.2 6.7 48 27-97 12-59 (190)
91 PF13014 KH_3: KH domain 44.9 35 0.00076 17.0 2.7 21 93-113 23-43 (43)
92 PF07076 DUF1344: Protein of u 43.6 29 0.00063 19.5 2.3 15 70-84 25-39 (61)
93 cd02175 GH16_lichenase lichena 42.8 1E+02 0.0022 21.1 5.5 47 28-77 31-80 (212)
94 PF03983 SHD1: SLA1 homology d 41.5 29 0.00064 20.0 2.2 30 9-38 14-43 (70)
95 PRK11198 LysM domain/BON super 40.4 44 0.00096 21.8 3.2 26 24-50 38-63 (147)
96 KOG3413 Mitochondrial matrix p 39.8 15 0.00033 24.4 0.9 22 77-98 68-89 (156)
97 TIGR03422 mito_frataxin fratax 38.8 23 0.0005 21.6 1.6 16 84-99 30-45 (97)
98 cd02178 GH16_beta_agarase Beta 38.3 1.4E+02 0.0031 21.1 6.7 44 33-77 60-110 (258)
99 PF06045 Rhamnogal_lyase: Rham 36.1 87 0.0019 21.9 4.2 21 81-101 14-34 (203)
100 PF00347 Ribosomal_L6: Ribosom 36.0 82 0.0018 17.6 4.1 44 28-97 2-47 (77)
101 TIGR00251 conserved hypothetic 35.5 1E+02 0.0022 18.5 4.4 40 10-50 1-42 (87)
102 PTZ00179 60S ribosomal protein 34.9 1.5E+02 0.0033 20.3 6.0 47 28-97 12-58 (189)
103 PF09985 DUF2223: Domain of un 34.4 1.7E+02 0.0036 20.7 6.1 91 7-99 35-142 (228)
104 cd07698 IgC_MHC_I_alpha3 Class 34.3 98 0.0021 18.0 6.3 66 14-90 14-82 (93)
105 smart00813 Alpha-L-AF_C Alpha- 32.5 1.4E+02 0.0031 20.0 4.9 29 71-99 159-188 (189)
106 cd02182 GH16_Strep_laminarinas 32.4 1.2E+02 0.0027 21.4 4.7 43 33-76 48-98 (259)
107 cd08023 GH16_laminarinase_like 32.4 1.7E+02 0.0037 20.1 7.0 50 25-77 34-91 (235)
108 PRK14299 chaperone protein Dna 32.3 2E+02 0.0043 20.9 7.2 25 75-99 212-236 (291)
109 PF13141 DUF3979: Protein of u 31.8 1.3E+02 0.0027 18.5 4.4 54 53-111 13-69 (114)
110 PF15525 DUF4652: Domain of un 31.7 1.8E+02 0.0039 20.3 7.6 69 26-97 112-180 (200)
111 PF13620 CarboxypepD_reg: Carb 30.9 87 0.0019 17.4 3.2 28 15-42 48-76 (82)
112 cd07699 IgC_L Immunoglobulin C 30.2 1.1E+02 0.0023 18.3 3.6 37 2-38 5-41 (100)
113 PF00722 Glyco_hydro_16: Glyco 30.2 1.6E+02 0.0035 19.2 4.9 45 33-77 14-59 (185)
114 PF11741 AMIN: AMIN domain; I 29.8 1.2E+02 0.0025 17.5 8.9 16 9-24 2-17 (95)
115 PF12866 DUF3823: Protein of u 29.8 1.6E+02 0.0035 20.7 4.8 28 17-44 79-110 (222)
116 PF14545 DBB: Dof, BCAP, and B 28.9 1.7E+02 0.0038 19.2 5.0 29 13-41 47-78 (142)
117 PF08845 SymE_toxin: Toxin Sym 28.9 96 0.0021 17.0 2.9 21 23-44 35-56 (57)
118 PF08918 PhoQ_Sensor: PhoQ Sen 27.1 49 0.0011 22.5 1.7 16 84-99 53-68 (180)
119 PF14869 DUF4488: Domain of un 26.0 1.9E+02 0.0042 18.8 9.5 75 5-99 26-102 (133)
120 COG0097 RplF Ribosomal protein 25.9 2.2E+02 0.0049 19.5 6.2 21 26-47 10-30 (178)
121 COG1965 CyaY Protein implicate 25.7 83 0.0018 19.7 2.5 17 83-99 30-46 (106)
122 PF07873 YabP: YabP family; I 25.3 65 0.0014 17.9 1.9 21 26-47 23-43 (66)
123 COG4004 Uncharacterized protei 24.9 1.7E+02 0.0038 17.8 4.1 34 7-45 25-58 (96)
124 cd00413 Glyco_hydrolase_16 gly 24.9 2.2E+02 0.0047 19.0 5.2 49 27-77 28-79 (210)
125 PF13600 DUF4140: N-terminal d 24.7 1.1E+02 0.0024 18.3 3.0 26 73-98 30-57 (104)
126 PF10988 DUF2807: Protein of u 24.2 70 0.0015 20.9 2.1 32 14-46 18-49 (181)
127 PF05455 GvpH: GvpH; InterPro 24.2 2.4E+02 0.0053 19.3 6.5 39 13-52 134-172 (177)
128 cd02179 GH16_beta_GRP beta-1,3 23.6 3.1E+02 0.0068 20.4 8.1 15 34-49 42-56 (321)
129 PF14014 DUF4230: Protein of u 23.4 56 0.0012 21.0 1.5 24 77-100 51-79 (157)
130 cd00098 IgC Immunoglobulin Con 23.4 1.5E+02 0.0033 16.7 4.6 71 12-92 11-86 (95)
131 PF08473 VGCC_alpha2: Neuronal 23.1 55 0.0012 20.0 1.3 35 64-99 52-86 (94)
132 PRK13726 conjugal transfer pil 22.8 2E+02 0.0044 19.7 4.2 52 28-98 130-181 (188)
133 PRK09965 3-phenylpropionate di 22.8 1.8E+02 0.0039 17.4 3.7 26 75-100 80-105 (106)
134 TIGR03780 Bac_Flav_CT_N Bacter 22.7 3.2E+02 0.007 20.2 7.1 83 9-100 175-265 (285)
135 PF11730 DUF3297: Protein of u 22.4 1.7E+02 0.0037 16.8 3.2 27 87-113 39-65 (71)
136 cd02180 GH16_fungal_KRE6_gluca 22.4 3.3E+02 0.0071 20.1 5.8 46 28-76 40-90 (295)
137 PF12080 GldM_C: GldM C-termin 22.2 1.5E+02 0.0032 20.1 3.4 37 7-44 6-42 (181)
138 cd01759 PLAT_PL PLAT/LH2 domai 22.1 2.1E+02 0.0046 17.9 7.6 33 67-99 45-78 (113)
139 PRK01379 cyaY frataxin-like pr 21.6 97 0.0021 19.2 2.2 15 83-97 30-44 (103)
140 TIGR02856 spore_yqfC sporulati 21.5 84 0.0018 18.6 1.9 22 25-47 40-61 (85)
141 TIGR02934 nifT_nitrog probable 21.5 99 0.0021 17.7 2.1 15 88-102 9-23 (67)
142 cd03863 M14_CPD_II The second 21.3 1.7E+02 0.0037 22.3 3.9 28 14-41 340-367 (375)
143 PF03368 Dicer_dimer: Dicer di 21.0 1.3E+02 0.0029 17.7 2.7 24 3-26 19-42 (90)
144 COG4070 Predicted peptidyl-pro 20.9 2.9E+02 0.0062 21.7 4.9 30 15-44 115-144 (512)
145 cd06407 PB1_NLP A PB1 domain i 20.8 1E+02 0.0023 18.0 2.2 18 82-99 2-19 (82)
146 PLN02711 Probable galactinol-- 20.3 1.9E+02 0.0042 24.4 4.2 37 73-111 737-775 (777)
No 1
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.4e-29 Score=166.84 Aligned_cols=108 Identities=39% Similarity=0.632 Sum_probs=101.5
Q ss_pred ecceecEEEcCCeEEEEEEcCCCCCCCEEEEEeCCcEEEEEEEEeccccCCCCcEEEeeeeeeeEEEEEECCCCcccCce
Q 033685 4 IPNFINLTETPEAHVFKTDLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQI 83 (113)
Q Consensus 4 ~~p~~dv~e~~~~~~i~~~lpG~~~~~i~v~v~~~~~L~I~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i 83 (113)
+.|++||+++++.|.|.++|||+++++|+|.+.+ +.|+|+|++..+...+...++++|+.+|.|+|+|.||..++++.+
T Consensus 39 ~~P~vdi~e~~~~~~I~~elPG~~kedI~I~~~~-~~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v~~~~~ 117 (146)
T COG0071 39 GTPPVDIEETDDEYRITAELPGVDKEDIEITVEG-NTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVDPEVI 117 (146)
T ss_pred CCCcEEEEEcCCEEEEEEEcCCCChHHeEEEEEC-CEEEEEEEecccccccCCceEEEEEEeeeEEEEEECcccccccce
Confidence 5799999999999999999999999999999999 599999999987777888999999999999999999999999999
Q ss_pred EEEEeCCEEEEEEeCCCCCCCCeEEEEcC
Q 033685 84 KASMESGVLTVTVPKVEVTKPDVKAIEIS 112 (113)
Q Consensus 84 ~A~~~~GiL~I~~pk~~~~~~~~~~I~I~ 112 (113)
+|+|+||+|+|++||..+++...++|+|+
T Consensus 118 ~A~~~nGvL~I~lpk~~~~~~~~~~i~I~ 146 (146)
T COG0071 118 KAKYKNGLLTVTLPKAEPEEKKPKRIEIE 146 (146)
T ss_pred eeEeeCcEEEEEEeccccccccCceeecC
Confidence 99999999999999999887667888874
No 2
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=99.97 E-value=1.3e-29 Score=165.83 Aligned_cols=104 Identities=22% Similarity=0.337 Sum_probs=92.9
Q ss_pred cceecEEE-cCCeEEEEEEcCCCCCCCEEEEEeCCcEEEEEEEEeccccCCCCcEEEeeeeeeeEEEEEECCCCcccCce
Q 033685 5 PNFINLTE-TPEAHVFKTDLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQI 83 (113)
Q Consensus 5 ~p~~dv~e-~~~~~~i~~~lpG~~~~~i~v~v~~~~~L~I~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i 83 (113)
.|++||+| ++++|.|.++|||+++++|+|.+.+ +.|+|+|+++.+ .++.+|++.|+++|.|+|+|.||++||.+
T Consensus 32 ~P~vdI~e~~~~~y~v~adlPGv~kedi~V~v~~-~~LtI~ge~~~~--~~~~~~~~~Er~~g~F~R~f~LP~~vd~~-- 106 (142)
T PRK11597 32 FPPYNIEKSDDNHYRITLALAGFRQEDLDIQLEG-TRLTVKGTPEQP--EKEVKWLHQGLVNQPFSLSFTLAENMEVS-- 106 (142)
T ss_pred CCcEEEEEcCCCEEEEEEEeCCCCHHHeEEEEEC-CEEEEEEEEccc--cCCCcEEEEEEeCcEEEEEEECCCCcccC--
Confidence 48999998 5789999999999999999999998 699999997643 35678999999999999999999999998
Q ss_pred EEEEeCCEEEEEEeCCCCCCCCeEEEEcCC
Q 033685 84 KASMESGVLTVTVPKVEVTKPDVKAIEISG 113 (113)
Q Consensus 84 ~A~~~~GiL~I~~pk~~~~~~~~~~I~I~~ 113 (113)
+|+|+||+|+|++||..++.++.++|+|+.
T Consensus 107 ~A~~~nGVL~I~lPK~~~~~~~~rkI~I~~ 136 (142)
T PRK11597 107 GATFVNGLLHIDLIRNEPEAIAPQRIAISE 136 (142)
T ss_pred cCEEcCCEEEEEEeccCccccCCcEEEECC
Confidence 799999999999999866566678999873
No 3
>PRK10743 heat shock protein IbpA; Provisional
Probab=99.97 E-value=2.1e-29 Score=164.24 Aligned_cols=102 Identities=22% Similarity=0.356 Sum_probs=92.1
Q ss_pred ceecEEE-cCCeEEEEEEcCCCCCCCEEEEEeCCcEEEEEEEEeccccCCCCcEEEeeeeeeeEEEEEECCCCcccCceE
Q 033685 6 NFINLTE-TPEAHVFKTDLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIK 84 (113)
Q Consensus 6 p~~dv~e-~~~~~~i~~~lpG~~~~~i~v~v~~~~~L~I~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~ 84 (113)
|++||.+ ++++|.|.++|||+++++|+|++.+ +.|+|+|+++.+. ++.+|++.|++.|+|+|+|.||++||.+ +
T Consensus 35 p~~di~ee~~~~~~v~aelPGv~kedi~V~v~~-~~LtI~ge~~~~~--~~~~~~~~Er~~g~F~R~~~LP~~Vd~~--~ 109 (137)
T PRK10743 35 PPYNVELVDENHYRIAIAVAGFAESELEITAQD-NLLVVKGAHADEQ--KERTYLYQGIAERNFERKFQLAENIHVR--G 109 (137)
T ss_pred CcEEEEEcCCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEECccc--cCCcEEEEEEECCEEEEEEECCCCcccC--c
Confidence 8999994 8999999999999999999999998 5999999976543 5678999999999999999999999999 5
Q ss_pred EEEeCCEEEEEEeCCCCCCCCeEEEEcC
Q 033685 85 ASMESGVLTVTVPKVEVTKPDVKAIEIS 112 (113)
Q Consensus 85 A~~~~GiL~I~~pk~~~~~~~~~~I~I~ 112 (113)
|+|+||+|+|++||..++..+.++|+|+
T Consensus 110 A~~~dGVL~I~lPK~~~~~~~~r~I~I~ 137 (137)
T PRK10743 110 ANLVNGLLYIDLERVIPEAKKPRRIEIN 137 (137)
T ss_pred CEEeCCEEEEEEeCCCccccCCeEEeeC
Confidence 9999999999999986666667899985
No 4
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=99.96 E-value=1.6e-28 Score=150.50 Aligned_cols=92 Identities=68% Similarity=1.080 Sum_probs=86.3
Q ss_pred eecEEEcCCeEEEEEEcCCCCCCCEEEEEeCCcEEEEEEEEeccccCCCCcEEEeeeeeeeEEEEEECCCCcccCceEEE
Q 033685 7 FINLTETPEAHVFKTDLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKAS 86 (113)
Q Consensus 7 ~~dv~e~~~~~~i~~~lpG~~~~~i~v~v~~~~~L~I~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~A~ 86 (113)
++||+|+++.|.|.++|||+++++|+|.+.+++.|+|+|.+..+...++..++++|+..|.|.|+|.||.+++.++++|+
T Consensus 1 ~~dv~E~~~~~~i~~~lPGv~~edi~i~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~~~~i~A~ 80 (92)
T cd06472 1 RVDWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENADADEVKAF 80 (92)
T ss_pred CccEEEcCCeEEEEEECCCCChHhEEEEEeCCCEEEEEEEecccccccCCCEEEEEEeccEEEEEEECCCCCCHHHCEEE
Confidence 47999999999999999999999999999974689999998876666778899999999999999999999999999999
Q ss_pred EeCCEEEEEEeC
Q 033685 87 MESGVLTVTVPK 98 (113)
Q Consensus 87 ~~~GiL~I~~pk 98 (113)
|+||+|+|++||
T Consensus 81 ~~nGvL~I~lPK 92 (92)
T cd06472 81 LENGVLTVTVPK 92 (92)
T ss_pred EECCEEEEEecC
Confidence 999999999997
No 5
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=99.95 E-value=4.5e-27 Score=146.07 Aligned_cols=101 Identities=46% Similarity=0.756 Sum_probs=84.3
Q ss_pred cEEEcCCeEEEEEEcCCCCCCCEEEEEeCCcEEEEEEEEeccccCCCCcEEEeeeeeeeEEEEEECCCCcccCceEEEEe
Q 033685 9 NLTETPEAHVFKTDLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASME 88 (113)
Q Consensus 9 dv~e~~~~~~i~~~lpG~~~~~i~v~v~~~~~L~I~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~A~~~ 88 (113)
||.+++++|.|.++|||+++++|+|.+.+ +.|.|+|.+. ....+..+...+++.+.|.|+|.||+++|+++++|+|+
T Consensus 1 di~e~~~~~~i~~~lpG~~~edi~I~~~~-~~L~I~g~~~--~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~a~~~ 77 (102)
T PF00011_consen 1 DIKEDEDEYIIKVDLPGFDKEDIKIKVDD-NKLVISGKRK--EEEEDDRYYRSERRYGSFERSIRLPEDVDPDKIKASYE 77 (102)
T ss_dssp EEEESSSEEEEEEE-TTS-GGGEEEEEET-TEEEEEEEEE--GEECTTCEEEE-S-SEEEEEEEE-STTB-GGG-EEEET
T ss_pred CeEECCCEEEEEEECCCCChHHEEEEEec-Cccceeceee--eeeeeeeeeecccccceEEEEEcCCCcCCcceEEEEec
Confidence 78999999999999999999999999998 5999999998 33456678888999999999999999999999999999
Q ss_pred CCEEEEEEeCCCCCCC-CeEEEEcC
Q 033685 89 SGVLTVTVPKVEVTKP-DVKAIEIS 112 (113)
Q Consensus 89 ~GiL~I~~pk~~~~~~-~~~~I~I~ 112 (113)
||+|+|++||...... ..++|+|+
T Consensus 78 ~GvL~I~~pk~~~~~~~~~~~I~I~ 102 (102)
T PF00011_consen 78 NGVLTITIPKKEEEEDSQPKRIPIK 102 (102)
T ss_dssp TSEEEEEEEBSSSCTTSSSCEE-ET
T ss_pred CCEEEEEEEccccccCCCCeEEEeC
Confidence 9999999999987654 66899986
No 6
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=99.94 E-value=1.5e-26 Score=141.77 Aligned_cols=91 Identities=43% Similarity=0.709 Sum_probs=83.0
Q ss_pred ceecEEEcCCeEEEEEEcCCCCCCCEEEEEeCCcEEEEEEEEecccc--CCCCcEEEeeeeeeeEEEEEECCCCcccCce
Q 033685 6 NFINLTETPEAHVFKTDLPGLRKEEVKVEVEDDRVLQISGQRNIEKE--DKNDTWHRVERSSGMFSRRFRLPENVKMDQI 83 (113)
Q Consensus 6 p~~dv~e~~~~~~i~~~lpG~~~~~i~v~v~~~~~L~I~~~~~~~~~--~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i 83 (113)
|++||.|+++.|.|.++|||+++++|+|.+.+ +.|+|+|+++...+ ....+++++|+..|+|.|+|.|| +++.+.+
T Consensus 1 ~~~di~e~~~~~~i~~~lPGv~~edi~v~~~~-~~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lp-~v~~~~i 78 (93)
T cd06471 1 MKTDIKETDDEYIVEADLPGFKKEDIKLDYKD-GYLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSFYLP-NVDEEEI 78 (93)
T ss_pred CceeEEEcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEccccccccccCCEEEEeeeccEEEEEEECC-CCCHHHC
Confidence 47999999999999999999999999999998 59999999976433 23457999999999999999999 7999999
Q ss_pred EEEEeCCEEEEEEeC
Q 033685 84 KASMESGVLTVTVPK 98 (113)
Q Consensus 84 ~A~~~~GiL~I~~pk 98 (113)
+|+|+||+|+|++||
T Consensus 79 ~A~~~dGvL~I~lPK 93 (93)
T cd06471 79 KAKYENGVLKITLPK 93 (93)
T ss_pred EEEEECCEEEEEEcC
Confidence 999999999999997
No 7
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=99.94 E-value=5e-26 Score=138.90 Aligned_cols=89 Identities=22% Similarity=0.452 Sum_probs=82.6
Q ss_pred ceecEEEcC-CeEEEEEEcCCCCCCCEEEEEeCCcEEEEEEEEeccccCCCCcEEEeeeeeeeEEEEEECCCCcccCceE
Q 033685 6 NFINLTETP-EAHVFKTDLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIK 84 (113)
Q Consensus 6 p~~dv~e~~-~~~~i~~~lpG~~~~~i~v~v~~~~~L~I~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~ 84 (113)
|++||++++ +.|.+.++|||+++++|+|.+.+ +.|+|+|.++.... ++.+|+++|+..|.|.|+|.||.+++.. +
T Consensus 1 p~~di~e~~~~~~~v~~~lPG~~kedi~v~~~~-~~L~I~g~~~~~~~-~~~~~~~~e~~~g~f~R~~~LP~~vd~~--~ 76 (90)
T cd06470 1 PPYNIEKTGENNYRITLAVAGFSEDDLEIEVEN-NQLTVTGKKADEEN-EEREYLHRGIAKRAFERSFNLADHVKVK--G 76 (90)
T ss_pred CCeeeEEcCCCeEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEccccc-CCCcEEEEEEeceEEEEEEECCCCceEC--e
Confidence 789999975 99999999999999999999998 59999999987765 6778999999999999999999999875 9
Q ss_pred EEEeCCEEEEEEeC
Q 033685 85 ASMESGVLTVTVPK 98 (113)
Q Consensus 85 A~~~~GiL~I~~pk 98 (113)
|+|+||+|+|+||+
T Consensus 77 A~~~~GvL~I~l~~ 90 (90)
T cd06470 77 AELENGLLTIDLER 90 (90)
T ss_pred eEEeCCEEEEEEEC
Confidence 99999999999985
No 8
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=99.92 E-value=2.9e-24 Score=130.10 Aligned_cols=82 Identities=28% Similarity=0.505 Sum_probs=72.9
Q ss_pred cEEEcCCeEEEEEEcCCCCCCCEEEEEeCCcEEEEEEEEeccccCCCCcEEEeeeeeeeEEEEEECCCCcccCceEEEE-
Q 033685 9 NLTETPEAHVFKTDLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASM- 87 (113)
Q Consensus 9 dv~e~~~~~~i~~~lpG~~~~~i~v~v~~~~~L~I~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~A~~- 87 (113)
+|.+++++|.|.++|||+++++|+|.+.+ +.|+|+|++.... ++..|.+++ |+|+|.||+++|+++++|+|
T Consensus 4 ~v~e~~~~~~v~~dlpG~~~edi~V~v~~-~~L~I~g~~~~~~--~~~~~~~~e-----f~R~~~LP~~Vd~~~i~A~~~ 75 (86)
T cd06497 4 EVRSDRDKFTIYLDVKHFSPEDLTVKVLD-DYVEIHGKHSERQ--DDHGYISRE-----FHRRYRLPSNVDQSAITCSLS 75 (86)
T ss_pred eEEEcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEccee--CCCCEEEEE-----EEEEEECCCCCChHHeEEEeC
Confidence 68999999999999999999999999998 5999999875432 344565554 99999999999999999999
Q ss_pred eCCEEEEEEeC
Q 033685 88 ESGVLTVTVPK 98 (113)
Q Consensus 88 ~~GiL~I~~pk 98 (113)
+||+|+|++||
T Consensus 76 ~dGvL~I~~PK 86 (86)
T cd06497 76 ADGMLTFSGPK 86 (86)
T ss_pred CCCEEEEEecC
Confidence 89999999997
No 9
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=99.91 E-value=1.8e-23 Score=126.10 Aligned_cols=82 Identities=26% Similarity=0.440 Sum_probs=71.6
Q ss_pred EEEcCCeEEEEEEcCCCCCCCEEEEEeCCcEEEEEEEEeccccCCCCcEEEeeeeeeeEEEEEECCCCcccCceEEEEe-
Q 033685 10 LTETPEAHVFKTDLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASME- 88 (113)
Q Consensus 10 v~e~~~~~~i~~~lpG~~~~~i~v~v~~~~~L~I~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~A~~~- 88 (113)
+.+++++|.|.++|||+++++|+|.+.+ +.|+|+|++.... ++.+++++ .|+|+|.||.++|.++++|+|+
T Consensus 2 ~~~~~~~~~v~~dlpG~~~edi~V~v~~-~~L~I~g~~~~~~--~~~~~~~~-----eF~R~~~LP~~vd~~~i~A~~~~ 73 (84)
T cd06498 2 MRLEKDKFSVNLDVKHFSPEELKVKVLG-DFIEIHGKHEERQ--DEHGFISR-----EFQRKYRIPADVDPLTITSSLSP 73 (84)
T ss_pred eEeCCceEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEccee--CCCCEEEE-----EEEEEEECCCCCChHHcEEEeCC
Confidence 6788999999999999999999999998 5999999875443 33445543 5999999999999999999995
Q ss_pred CCEEEEEEeCC
Q 033685 89 SGVLTVTVPKV 99 (113)
Q Consensus 89 ~GiL~I~~pk~ 99 (113)
||+|+|++||+
T Consensus 74 dGvL~I~lPk~ 84 (84)
T cd06498 74 DGVLTVCGPRK 84 (84)
T ss_pred CCEEEEEEeCC
Confidence 99999999985
No 10
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=99.91 E-value=2.1e-23 Score=125.54 Aligned_cols=82 Identities=26% Similarity=0.452 Sum_probs=71.6
Q ss_pred cEEEcCCeEEEEEEcCCCCCCCEEEEEeCCcEEEEEEEEeccccCCCCcEEEeeeeeeeEEEEEECCCCcccCceEEEE-
Q 033685 9 NLTETPEAHVFKTDLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASM- 87 (113)
Q Consensus 9 dv~e~~~~~~i~~~lpG~~~~~i~v~v~~~~~L~I~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~A~~- 87 (113)
++.+++++|.|.++|||+++++|+|.+.+ +.|+|+|.+.... ++..+.++ .|.|+|.||.++|.++++|+|
T Consensus 1 ~~~~~~~~~~v~~dlpG~~~edI~V~v~~-~~L~I~g~~~~~~--~~~~~~~~-----ef~R~~~LP~~vd~~~i~A~~~ 72 (83)
T cd06478 1 EVRLDKDRFSVNLDVKHFSPEELSVKVLG-DFVEIHGKHEERQ--DEHGFISR-----EFHRRYRLPPGVDPAAITSSLS 72 (83)
T ss_pred CeeecCceEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEceEc--CCCCEEEE-----EEEEEEECCCCcChHHeEEEEC
Confidence 46789999999999999999999999998 5999999875432 23445554 399999999999999999999
Q ss_pred eCCEEEEEEeC
Q 033685 88 ESGVLTVTVPK 98 (113)
Q Consensus 88 ~~GiL~I~~pk 98 (113)
+||+|+|++||
T Consensus 73 ~dGvL~I~~PK 83 (83)
T cd06478 73 ADGVLTISGPR 83 (83)
T ss_pred CCCEEEEEecC
Confidence 69999999997
No 11
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=99.91 E-value=1.2e-23 Score=125.88 Aligned_cols=79 Identities=19% Similarity=0.418 Sum_probs=71.4
Q ss_pred cEEEcCCeEEEEEEcCCCCCCCEEEEEeCCcEEEEEEEEeccccCCCCcEEEeeeeeeeEEEEEECCCCcccCceEEEE-
Q 033685 9 NLTETPEAHVFKTDLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASM- 87 (113)
Q Consensus 9 dv~e~~~~~~i~~~lpG~~~~~i~v~v~~~~~L~I~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~A~~- 87 (113)
||.|+++.|.|.++|||+++++|+|.+.+ +.|+|+|+++.+. + ..+|+|.|+|.||.++|+++++|+|
T Consensus 2 ~v~e~~~~~~v~~dlpG~~pedi~V~v~~-~~L~I~ger~~~~---~-------~~~g~F~R~~~LP~~vd~e~v~A~l~ 70 (81)
T cd06479 2 NVKTLGDTYQFAVDVSDFSPEDIIVTTSN-NQIEVHAEKLASD---G-------TVMNTFTHKCQLPEDVDPTSVSSSLG 70 (81)
T ss_pred CccCcCCeEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEeccC---C-------CEEEEEEEEEECCCCcCHHHeEEEec
Confidence 68999999999999999999999999998 6999999986432 1 2478999999999999999999997
Q ss_pred eCCEEEEEEeC
Q 033685 88 ESGVLTVTVPK 98 (113)
Q Consensus 88 ~~GiL~I~~pk 98 (113)
+||+|+|++++
T Consensus 71 ~~GvL~I~~~~ 81 (81)
T cd06479 71 EDGTLTIKARR 81 (81)
T ss_pred CCCEEEEEecC
Confidence 99999999985
No 12
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.90 E-value=1.5e-22 Score=121.89 Aligned_cols=88 Identities=58% Similarity=0.902 Sum_probs=81.4
Q ss_pred cEEEcCCeEEEEEEcCCCCCCCEEEEEeCCcEEEEEEEEeccccCCCCcEEEeeeeeeeEEEEEECCCCcccCceEEEEe
Q 033685 9 NLTETPEAHVFKTDLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASME 88 (113)
Q Consensus 9 dv~e~~~~~~i~~~lpG~~~~~i~v~v~~~~~L~I~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~A~~~ 88 (113)
++.++++.|.+.++|||+++++|+|.+.+ +.|.|+|++........ .+...++..+.|.|+|.||.+++.+.++|.|.
T Consensus 1 ~i~e~~~~~~i~~~lpg~~~~~i~V~v~~-~~l~I~g~~~~~~~~~~-~~~~~~~~~~~f~r~~~LP~~vd~~~i~a~~~ 78 (88)
T cd06464 1 DVYETDDAYVVEADLPGFKKEDIKVEVED-GVLTISGEREEEEEEEE-NYLRRERSYGSFSRSFRLPEDVDPDKIKASLE 78 (88)
T ss_pred CcEEcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEecccccCC-cEEEEEEeCcEEEEEEECCCCcCHHHcEEEEe
Confidence 57899999999999999999999999999 69999999987665444 78889999999999999999999999999999
Q ss_pred CCEEEEEEeC
Q 033685 89 SGVLTVTVPK 98 (113)
Q Consensus 89 ~GiL~I~~pk 98 (113)
||+|+|++||
T Consensus 79 ~G~L~I~~pk 88 (88)
T cd06464 79 NGVLTITLPK 88 (88)
T ss_pred CCEEEEEEcC
Confidence 9999999997
No 13
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=99.90 E-value=1e-22 Score=123.54 Aligned_cols=83 Identities=29% Similarity=0.542 Sum_probs=72.6
Q ss_pred EcCCeEEEEEEcCCCCCCCEEEEEeCCcEEEEEEEEeccccCCCCcEEEeeeeeeeEEEEEECCCCcccCceEEEE-eCC
Q 033685 12 ETPEAHVFKTDLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASM-ESG 90 (113)
Q Consensus 12 e~~~~~~i~~~lpG~~~~~i~v~v~~~~~L~I~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~A~~-~~G 90 (113)
+..+.|.|.++|||+.+++|+|.+.+ +.|+|+|++......+...|.+ ..|.|+|+|.||++||.+.++|+| +||
T Consensus 4 ~~~d~~~v~~dlpG~~~edI~V~v~~-~~L~I~g~~~~~~~~~~~~~~~---~~~~F~R~~~LP~~Vd~~~i~A~~~~dG 79 (87)
T cd06481 4 DGKEGFSLKLDVRGFSPEDLSVRVDG-RKLVVTGKREKKNEDEKGSFSY---EYQEFVREAQLPEHVDPEAVTCSLSPSG 79 (87)
T ss_pred CccceEEEEEECCCCChHHeEEEEEC-CEEEEEEEEeeecccCCCcEEE---EeeEEEEEEECCCCcChHHeEEEeCCCc
Confidence 45679999999999999999999998 6999999987665544455543 478999999999999999999999 999
Q ss_pred EEEEEEeC
Q 033685 91 VLTVTVPK 98 (113)
Q Consensus 91 iL~I~~pk 98 (113)
+|+|++|+
T Consensus 80 vL~I~~P~ 87 (87)
T cd06481 80 HLHIRAPR 87 (87)
T ss_pred eEEEEcCC
Confidence 99999995
No 14
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=99.89 E-value=1.5e-22 Score=121.76 Aligned_cols=81 Identities=20% Similarity=0.367 Sum_probs=69.8
Q ss_pred EEEcCCeEEEEEEcCCCCCCCEEEEEeCCcEEEEEEEEeccccCCCCcEEEeeeeeeeEEEEEECCCCcccCceEEEEe-
Q 033685 10 LTETPEAHVFKTDLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASME- 88 (113)
Q Consensus 10 v~e~~~~~~i~~~lpG~~~~~i~v~v~~~~~L~I~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~A~~~- 88 (113)
+..++++|.|.+++||+++++|+|.+.+ +.|+|+|++.... +..++.. +.|+|+|.||.++|+++++|+|.
T Consensus 2 ~~~~~d~y~v~~dlpG~~~edi~V~v~~-~~L~I~g~~~~~~--~~~~~~~-----~eF~R~~~LP~~vd~~~v~A~~~~ 73 (83)
T cd06476 2 VESEDDKYQVFLDVCHFTPDEITVRTVD-NLLEVSARHPQRM--DRHGFVS-----REFTRTYILPMDVDPLLVRASLSH 73 (83)
T ss_pred eeccCCeEEEEEEcCCCCHHHeEEEEEC-CEEEEEEEEccee--cCCCEEE-----EEEEEEEECCCCCChhhEEEEecC
Confidence 4568899999999999999999999998 5999999985432 2333444 35999999999999999999995
Q ss_pred CCEEEEEEeC
Q 033685 89 SGVLTVTVPK 98 (113)
Q Consensus 89 ~GiL~I~~pk 98 (113)
||+|+|++||
T Consensus 74 dGvL~I~~Pr 83 (83)
T cd06476 74 DGILCIQAPR 83 (83)
T ss_pred CCEEEEEecC
Confidence 9999999997
No 15
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=99.89 E-value=1.6e-22 Score=122.48 Aligned_cols=82 Identities=26% Similarity=0.505 Sum_probs=71.7
Q ss_pred ecEEEcCCeEEEEEEcCCCCCCCEEEEEeCCcEEEEEEEEeccccCCCCcEEEeeeeeeeEEEEEECCCCcccCceEEEE
Q 033685 8 INLTETPEAHVFKTDLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASM 87 (113)
Q Consensus 8 ~dv~e~~~~~~i~~~lpG~~~~~i~v~v~~~~~L~I~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~A~~ 87 (113)
.||+|++++|.|.++|||+++++|+|.+.+ +.|+|+|++..... ...+. .++|+|+|.||.++|+++++|+|
T Consensus 3 ~~i~e~~~~~~v~~dlPG~~~edi~V~v~~-~~L~I~g~~~~~~~--~~~~~-----~~~f~R~f~LP~~vd~~~v~A~~ 74 (86)
T cd06475 3 SEIRQTADRWKVSLDVNHFAPEELVVKTKD-GVVEITGKHEEKQD--EHGFV-----SRCFTRKYTLPPGVDPTAVTSSL 74 (86)
T ss_pred ceEEEcCCeEEEEEECCCCCHHHEEEEEEC-CEEEEEEEECcCcC--CCCEE-----EEEEEEEEECCCCCCHHHcEEEE
Confidence 489999999999999999999999999998 59999999864332 22232 35899999999999999999999
Q ss_pred e-CCEEEEEEe
Q 033685 88 E-SGVLTVTVP 97 (113)
Q Consensus 88 ~-~GiL~I~~p 97 (113)
. ||+|+|++|
T Consensus 75 ~~dGvL~I~lP 85 (86)
T cd06475 75 SPDGILTVEAP 85 (86)
T ss_pred CCCCeEEEEec
Confidence 6 999999998
No 16
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=99.88 E-value=9.2e-22 Score=119.13 Aligned_cols=80 Identities=24% Similarity=0.348 Sum_probs=69.6
Q ss_pred cCCeEEEEEEcCCCCCCCEEEEEeCCcEEEEEEEEeccccCCCCcEEEeeeeeeeEEEEEECCCCcccCceEEEEeCC-E
Q 033685 13 TPEAHVFKTDLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESG-V 91 (113)
Q Consensus 13 ~~~~~~i~~~lpG~~~~~i~v~v~~~~~L~I~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~A~~~~G-i 91 (113)
+++.|.|.++|||+++++|+|.+.+ +.|+|+|+++......+ ..++++|.|.|+|.||.+||.++++|+|+|| +
T Consensus 6 ~~~~~~v~adlPG~~kedI~V~v~~-~~L~I~ger~~~~e~~~----~~er~~g~F~R~f~LP~~Vd~d~i~A~~~~~~~ 80 (87)
T cd06482 6 DSSNVLASVDVCGFEPDQVKVKVKD-GKVQVSAERENRYDCLG----SKKYSYMNICKEFSLPPGVDEKDVTYSYGLGSV 80 (87)
T ss_pred cCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEecccccCC----ccEEEEEEEEEEEECCCCcChHHcEEEEcCCCE
Confidence 5789999999999999999999998 59999999876543222 2377899999999999999999999999666 9
Q ss_pred EEEEEe
Q 033685 92 LTVTVP 97 (113)
Q Consensus 92 L~I~~p 97 (113)
|+|.-|
T Consensus 81 l~i~~~ 86 (87)
T cd06482 81 VKIETP 86 (87)
T ss_pred EEEeeC
Confidence 999876
No 17
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.87 E-value=9.6e-22 Score=118.25 Aligned_cols=78 Identities=36% Similarity=0.610 Sum_probs=68.2
Q ss_pred cCCeEEEEEEcCCCCCCCEEEEEeCCcEEEEEEEEeccccCCCCcEEEeeeeeeeEEEEEECCCCcccCceEEEEeC-CE
Q 033685 13 TPEAHVFKTDLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMES-GV 91 (113)
Q Consensus 13 ~~~~~~i~~~lpG~~~~~i~v~v~~~~~L~I~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~A~~~~-Gi 91 (113)
.++.|.|.++|||+.+++|+|.+.+ +.|.|+|++..... .. ++..+.|.|+|.||.++|+++++|+|.| |+
T Consensus 5 ~~~~~~v~~dlpG~~~edI~v~v~~-~~L~I~g~~~~~~~--~~-----~~~~~~f~r~~~LP~~vd~~~i~A~~~~~Gv 76 (83)
T cd06526 5 DDEKFQVTLDVKGFKPEELKVKVSD-NKLVVEGKHEERED--EH-----GYVSREFTRRYQLPEGVDPDSVTSSLSSDGV 76 (83)
T ss_pred cCeeEEEEEECCCCCHHHcEEEEEC-CEEEEEEEEeeecc--CC-----CEEEEEEEEEEECCCCCChHHeEEEeCCCcE
Confidence 3469999999999999999999998 69999999876543 11 2346789999999999999999999987 99
Q ss_pred EEEEEeC
Q 033685 92 LTVTVPK 98 (113)
Q Consensus 92 L~I~~pk 98 (113)
|+|++||
T Consensus 77 L~I~~Pk 83 (83)
T cd06526 77 LTIEAPK 83 (83)
T ss_pred EEEEecC
Confidence 9999997
No 18
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=99.87 E-value=3.2e-21 Score=115.88 Aligned_cols=79 Identities=24% Similarity=0.443 Sum_probs=68.2
Q ss_pred EEcCCeEEEEEEcCCCCCCCEEEEEeCCcEEEEEEEEeccccCCCCcEEEeeeeeeeEEEEEECCCCcccCceEEEE-eC
Q 033685 11 TETPEAHVFKTDLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASM-ES 89 (113)
Q Consensus 11 ~e~~~~~~i~~~lpG~~~~~i~v~v~~~~~L~I~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~A~~-~~ 89 (113)
.+++++|.|.++|||+++++|+|.+.+ +.|+|+|++..+.. ..++. .+.|+|+|.||.+|+.++++|+| +|
T Consensus 3 ~e~~~~~~v~~dlpG~~~edI~V~v~~-~~L~I~ge~~~~~~--~~~~~-----~r~F~R~~~LP~~Vd~~~v~A~~~~d 74 (83)
T cd06477 3 EEGKPMFQILLDVVQFRPEDIIIQVFE-GWLLIKGQHGVRMD--EHGFI-----SRSFTRQYQLPDGVEHKDLSAMLCHD 74 (83)
T ss_pred ccCCceEEEEEEcCCCCHHHeEEEEEC-CEEEEEEEEccccC--CCCEE-----EEEEEEEEECCCCcchheEEEEEcCC
Confidence 468899999999999999999999999 59999999876432 23332 23899999999999999999998 89
Q ss_pred CEEEEEEe
Q 033685 90 GVLTVTVP 97 (113)
Q Consensus 90 GiL~I~~p 97 (113)
|+|+|..|
T Consensus 75 GvL~I~~~ 82 (83)
T cd06477 75 GILVVETK 82 (83)
T ss_pred CEEEEEec
Confidence 99999876
No 19
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=7.8e-20 Score=125.65 Aligned_cols=110 Identities=58% Similarity=0.949 Sum_probs=99.9
Q ss_pred ecceecEEEcCCeEEEEEEcCCCCCCCEEEEEeCCcEEEEEEEEeccccC--CCCcEEEeeeeeeeEEEEEECCCCcccC
Q 033685 4 IPNFINLTETPEAHVFKTDLPGLRKEEVKVEVEDDRVLQISGQRNIEKED--KNDTWHRVERSSGMFSRRFRLPENVKMD 81 (113)
Q Consensus 4 ~~p~~dv~e~~~~~~i~~~lpG~~~~~i~v~v~~~~~L~I~~~~~~~~~~--~~~~~~~~e~~~~~f~r~~~lP~~vd~~ 81 (113)
+.++.++.+..+.|.+.+++||+..++++|.+.++++|.|+|.+..+.+. .+..++..|+..|.|.|.+.||+.++.+
T Consensus 83 ~~~~~~v~e~~~~~~~~~~~Pgl~ke~iKv~~~~~~~l~isGe~~~e~e~~~~~~~~~~~E~~~g~F~r~~~lPenv~~d 162 (196)
T KOG0710|consen 83 ARVPWDVKESPDAHEFKVDLPGLKKEDIKVEVEDEKVLTISGERKKEEEESGSGKKWKRVERKLGKFKRRFELPENVDVD 162 (196)
T ss_pred ccCCcccccCCCceEEEeeCCCCCchhceEEeccCcEEEEecccccccccccCCccceeehhcccceEeeecCCccccHH
Confidence 46778899999999999999999999999999997689999999877664 5677899999999999999999999999
Q ss_pred ceEEEEeCCEEEEEEeCCCC--CCCCeEEEEcCC
Q 033685 82 QIKASMESGVLTVTVPKVEV--TKPDVKAIEISG 113 (113)
Q Consensus 82 ~i~A~~~~GiL~I~~pk~~~--~~~~~~~I~I~~ 113 (113)
.++|.|+||+|.|++||..+ .....+.|.|+|
T Consensus 163 ~ikA~~~nGVL~VvvpK~~~~~~~~~v~~i~i~~ 196 (196)
T KOG0710|consen 163 EIKAEMENGVLTVVVPKLEPLLKKPKVRQIAISG 196 (196)
T ss_pred HHHHHhhCCeEEEEEecccccccCCccceeeccC
Confidence 99999999999999999988 577778888875
No 20
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=99.78 E-value=3.3e-18 Score=104.24 Aligned_cols=81 Identities=21% Similarity=0.407 Sum_probs=70.2
Q ss_pred cEEEcCCeEEEEEEcCCCCCCCEEEEEeCCcEEEEEEEEeccccCCCCcEEEeeeeeeeEEEEEECCCCcccCceEEEEe
Q 033685 9 NLTETPEAHVFKTDLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASME 88 (113)
Q Consensus 9 dv~e~~~~~~i~~~lpG~~~~~i~v~v~~~~~L~I~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~A~~~ 88 (113)
-+.+++++|.|.+++.||.+++|+|.+.+ +.|+|+|++...... ..+. .+.|.|+|.||.+||.+.++|++.
T Consensus 9 ~~~~~~~~f~v~ldv~gF~pEDL~Vkv~~-~~L~V~Gkh~~~~~e--~g~~-----~r~F~R~~~LP~~Vd~~~v~s~l~ 80 (91)
T cd06480 9 PPPNSSEPWKVCVNVHSFKPEELTVKTKD-GFVEVSGKHEEQQKE--GGIV-----SKNFTKKIQLPPEVDPVTVFASLS 80 (91)
T ss_pred CCCCCCCcEEEEEEeCCCCHHHcEEEEEC-CEEEEEEEECcccCC--CCEE-----EEEEEEEEECCCCCCchhEEEEeC
Confidence 34568899999999999999999999998 699999998765422 2333 367999999999999999999996
Q ss_pred -CCEEEEEEe
Q 033685 89 -SGVLTVTVP 97 (113)
Q Consensus 89 -~GiL~I~~p 97 (113)
||+|+|.+|
T Consensus 81 ~dGvL~IeaP 90 (91)
T cd06480 81 PEGLLIIEAP 90 (91)
T ss_pred CCCeEEEEcC
Confidence 999999998
No 21
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=1e-16 Score=108.09 Aligned_cols=98 Identities=22% Similarity=0.460 Sum_probs=84.1
Q ss_pred eecEEEcCCeEEEEEEcCCCCCCCEEEEEeCCcEEEEEEEEeccccCCCCcEEEeeeeeeeEEEEEECCCCcccCceEEE
Q 033685 7 FINLTETPEAHVFKTDLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKAS 86 (113)
Q Consensus 7 ~~dv~e~~~~~~i~~~lpG~~~~~i~v~v~~~~~L~I~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~A~ 86 (113)
..++..+.++|.+.+++..|.+++|+|.+.+ +.|.|+|+..... ++..+.. ..|.|.|.||.+||++.++++
T Consensus 64 ~~~~~~~~~~F~V~lDV~~F~PeEl~Vk~~~-~~l~V~gkHeer~--d~~G~v~-----R~F~R~y~LP~~vdp~~V~S~ 135 (173)
T KOG3591|consen 64 ASEIVNDKDKFEVNLDVHQFKPEELKVKTDD-NTLEVEGKHEEKE--DEHGYVS-----RSFVRKYLLPEDVDPTSVTST 135 (173)
T ss_pred ccccccCCCcEEEEEEcccCcccceEEEeCC-CEEEEEeeecccc--CCCCeEE-----EEEEEEecCCCCCChhheEEe
Confidence 4577889999999999999999999999998 5999999986654 3444443 359999999999999999999
Q ss_pred E-eCCEEEEEEeCCCCCCCCeEEEEcC
Q 033685 87 M-ESGVLTVTVPKVEVTKPDVKAIEIS 112 (113)
Q Consensus 87 ~-~~GiL~I~~pk~~~~~~~~~~I~I~ 112 (113)
+ .||+|+|..||........|.|+|+
T Consensus 136 LS~dGvLtI~ap~~~~~~~~er~ipI~ 162 (173)
T KOG3591|consen 136 LSSDGVLTIEAPKPPPKQDNERSIPIE 162 (173)
T ss_pred eCCCceEEEEccCCCCcCccceEEeEe
Confidence 9 8999999999998766556788775
No 22
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=99.67 E-value=1.4e-15 Score=88.60 Aligned_cols=80 Identities=54% Similarity=0.830 Sum_probs=70.7
Q ss_pred EEEcCCeEEEEEEcCCCCCCCEEEEEeCCcEEEEEEEEeccccCCCCcEEEeeeeeeeEEEEEECCCCcccCceEEEEeC
Q 033685 10 LTETPEAHVFKTDLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMES 89 (113)
Q Consensus 10 v~e~~~~~~i~~~lpG~~~~~i~v~v~~~~~L~I~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~A~~~~ 89 (113)
|.++++.|.|++++||+.+++++|.+.+ +.|.|++....... .+...+.|.+.+.||..++++.++|++.+
T Consensus 1 ~~q~~~~v~i~i~~~~~~~~~i~v~~~~-~~l~v~~~~~~~~~--------~~~~~~~~~~~~~L~~~i~~~~~~~~~~~ 71 (80)
T cd00298 1 WYQTDDEVVVTVDLPGVKKEDIKVEVED-NVLTISGKREEEEE--------RERSYGEFERSFELPEDVDPEKSKASLEN 71 (80)
T ss_pred CEEcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEcCCCc--------ceEeeeeEEEEEECCCCcCHHHCEEEEEC
Confidence 4678899999999999999999999998 69999998765433 33346689999999999999999999999
Q ss_pred CEEEEEEeC
Q 033685 90 GVLTVTVPK 98 (113)
Q Consensus 90 GiL~I~~pk 98 (113)
|.|+|.+||
T Consensus 72 ~~l~i~l~K 80 (80)
T cd00298 72 GVLEITLPK 80 (80)
T ss_pred CEEEEEEcC
Confidence 999999997
No 23
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=99.46 E-value=8.9e-13 Score=77.84 Aligned_cols=71 Identities=21% Similarity=0.277 Sum_probs=64.4
Q ss_pred EEEcCCeEEEEEEcCCCCCCCEEEEEeCCcEEEEEEEEeccccCCCCcEEEeeeeeeeEEEEEECCCCcccCceEEEEeC
Q 033685 10 LTETPEAHVFKTDLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMES 89 (113)
Q Consensus 10 v~e~~~~~~i~~~lpG~~~~~i~v~v~~~~~L~I~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~A~~~~ 89 (113)
+.++++.+.|.+.+||+.+++++|.+.+ +.|.|++ ..|.+.+.||..+++++.+|++.+
T Consensus 1 W~Qt~~~v~i~i~~p~v~~~~v~v~~~~-~~l~i~~--------------------~~~~~~~~l~~~I~~e~~~~~~~~ 59 (78)
T cd06469 1 WSQTDEDVKISVPLKGVKTSKVDIFCSD-LYLKVNF--------------------PPYLFELDLAAPIDDEKSSAKIGN 59 (78)
T ss_pred CcccCCEEEEEEEeCCCccccceEEEec-CEEEEcC--------------------CCEEEEEeCcccccccccEEEEeC
Confidence 4678999999999999999999999998 5899986 138889999999999999999999
Q ss_pred CEEEEEEeCCCC
Q 033685 90 GVLTVTVPKVEV 101 (113)
Q Consensus 90 GiL~I~~pk~~~ 101 (113)
|.|.|+|+|..+
T Consensus 60 ~~l~i~L~K~~~ 71 (78)
T cd06469 60 GVLVFTLVKKEP 71 (78)
T ss_pred CEEEEEEEeCCC
Confidence 999999999865
No 24
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=99.24 E-value=1.6e-10 Score=77.66 Aligned_cols=79 Identities=23% Similarity=0.458 Sum_probs=63.4
Q ss_pred cceecEEEcCC-eEEEEEEcCCCCCCC-EEEEEeCC-cEEEEEEEEeccccCCCCcEEEeeeeeeeEEEEEECCCCcccC
Q 033685 5 PNFINLTETPE-AHVFKTDLPGLRKEE-VKVEVEDD-RVLQISGQRNIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMD 81 (113)
Q Consensus 5 ~p~~dv~e~~~-~~~i~~~lpG~~~~~-i~v~v~~~-~~L~I~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~ 81 (113)
.+.+++.+.++ .++|.++|||+..++ |+|.+..+ ..|+|. . .+.+.+.+.||.. +++
T Consensus 91 ~~~vdtre~dDge~~VvAdLPGVs~dd~idV~l~~d~~~L~i~--~-----------------~~~~~krv~L~~~-~~e 150 (177)
T PF05455_consen 91 SIHVDTRERDDGELVVVADLPGVSDDDAIDVTLDDDEGALTIR--V-----------------GEKYLKRVALPWP-DPE 150 (177)
T ss_pred eeeeeeEecCCCcEEEEEeCCCCCcccceeeEeecCCceEEEe--c-----------------CCceEeeEecCCC-ccc
Confidence 57889998888 699999999998887 99999964 455554 2 1236689999977 688
Q ss_pred ceEEEEeCCEEEEEEeCCCCCC
Q 033685 82 QIKASMESGVLTVTVPKVEVTK 103 (113)
Q Consensus 82 ~i~A~~~~GiL~I~~pk~~~~~ 103 (113)
.++|+|+||+|+|++-+.....
T Consensus 151 ~~~~t~nNgILEIri~~~~~~~ 172 (177)
T PF05455_consen 151 ITSATFNNGILEIRIRRTEESS 172 (177)
T ss_pred eeeEEEeCceEEEEEeecCCCC
Confidence 8999999999999999886543
No 25
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=99.24 E-value=1.8e-10 Score=68.03 Aligned_cols=76 Identities=20% Similarity=0.186 Sum_probs=66.7
Q ss_pred EEEcCCeEEEEEEcCCCCCCCEEEEEeCCcEEEEEEEEeccccCCCCcEEEeeeeeeeEEEEEECCCCcccCceEEEEeC
Q 033685 10 LTETPEAHVFKTDLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMES 89 (113)
Q Consensus 10 v~e~~~~~~i~~~lpG~~~~~i~v~v~~~~~L~I~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~A~~~~ 89 (113)
+.++++.+.|.+.+||..+++++|.+.+ +.|.|++.... .+.|...+.|+..++++..++++.+
T Consensus 1 W~Q~~~~v~i~v~~~~~~~~~~~v~~~~-~~l~i~~~~~~---------------~~~~~~~~~L~~~I~~~~s~~~~~~ 64 (84)
T cd06463 1 WYQTLDEVTITIPLKDVTKKDVKVEFTP-KSLTVSVKGGG---------------GKEYLLEGELFGPIDPEESKWTVED 64 (84)
T ss_pred CcccccEEEEEEEcCCCCccceEEEEec-CEEEEEeeCCC---------------CCceEEeeEccCccchhhcEEEEeC
Confidence 3578999999999999999999999998 69999987531 2347888999999999999999999
Q ss_pred CEEEEEEeCCCC
Q 033685 90 GVLTVTVPKVEV 101 (113)
Q Consensus 90 GiL~I~~pk~~~ 101 (113)
|.|.|+|+|..+
T Consensus 65 ~~l~i~L~K~~~ 76 (84)
T cd06463 65 RKIEITLKKKEP 76 (84)
T ss_pred CEEEEEEEECCC
Confidence 999999999865
No 26
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=99.01 E-value=3.4e-09 Score=63.10 Aligned_cols=77 Identities=21% Similarity=0.216 Sum_probs=67.1
Q ss_pred cEEEcCCeEEEEEEcCCCCCCCEEEEEeCCcEEEEEEEEeccccCCCCcEEEeeeeeeeEEEEEECCCCcccCceEEEEe
Q 033685 9 NLTETPEAHVFKTDLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASME 88 (113)
Q Consensus 9 dv~e~~~~~~i~~~lpG~~~~~i~v~v~~~~~L~I~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~A~~~ 88 (113)
|++++++.+.|.+.+||+.++++.|.+.+ +.|.|++... ..+.|...+.|+..|+++..++++.
T Consensus 1 dW~Qt~~~v~i~v~~~~~~~~~v~v~~~~-~~l~i~~~~~---------------~~~~~~~~~~L~~~I~~~~s~~~~~ 64 (84)
T cd06466 1 DWYQTDTSVTVTIYAKNVDKEDVKVEFNE-QSLSVSIILP---------------GGSEYQLELDLFGPIDPEQSKVSVL 64 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEec-CEEEEEEECC---------------CCCeEEEecccccccCchhcEEEEe
Confidence 67899999999999999999999999998 6999986632 0124778889999999999999999
Q ss_pred CCEEEEEEeCCCC
Q 033685 89 SGVLTVTVPKVEV 101 (113)
Q Consensus 89 ~GiL~I~~pk~~~ 101 (113)
+|.|.|+|.|..+
T Consensus 65 ~~~vei~L~K~~~ 77 (84)
T cd06466 65 PTKVEITLKKAEP 77 (84)
T ss_pred CeEEEEEEEcCCC
Confidence 9999999999865
No 27
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=98.83 E-value=2.2e-07 Score=54.14 Aligned_cols=77 Identities=17% Similarity=0.165 Sum_probs=64.2
Q ss_pred ceecEEEcCCeEEEEEEcCCC--CCCCEEEEEeCCcEEEEEEEEeccccCCCCcEEEeeeeeeeEEEEEECCCCcccCce
Q 033685 6 NFINLTETPEAHVFKTDLPGL--RKEEVKVEVEDDRVLQISGQRNIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQI 83 (113)
Q Consensus 6 p~~dv~e~~~~~~i~~~lpG~--~~~~i~v~v~~~~~L~I~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i 83 (113)
|.++|.++++...|.+.+++. .++++.|.+.+ +.|.++...... ..|...+.|...|+++..
T Consensus 1 ~~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~~~-~~l~v~~~~~~~---------------~~~~~~~~L~~~I~~~~s 64 (79)
T PF04969_consen 1 PRYDWYQTDDEVTVTIPVKPVDISKEDVKVDFTD-TSLSVSIKSGDG---------------KEYLLEGELFGEIDPDES 64 (79)
T ss_dssp SSEEEEEESSEEEEEEE-TTTTSSGGGEEEEEET-TEEEEEEEETTS---------------CEEEEEEEBSS-BECCCE
T ss_pred CCeEEEECCCEEEEEEEEcCCCCChHHeEEEEEe-eEEEEEEEccCC---------------ceEEEEEEEeeeEcchhc
Confidence 678999999999999999665 49999999999 599999654322 137778889999999999
Q ss_pred EEEEeCCEEEEEEeC
Q 033685 84 KASMESGVLTVTVPK 98 (113)
Q Consensus 84 ~A~~~~GiL~I~~pk 98 (113)
+.++.++.|.|+|.|
T Consensus 65 ~~~~~~~~i~i~L~K 79 (79)
T PF04969_consen 65 TWKVKDNKIEITLKK 79 (79)
T ss_dssp EEEEETTEEEEEEEB
T ss_pred EEEEECCEEEEEEEC
Confidence 999999999999986
No 28
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=98.61 E-value=1.2e-06 Score=54.77 Aligned_cols=78 Identities=10% Similarity=0.181 Sum_probs=66.7
Q ss_pred ceecEEEcCCeEEEEEEcCCCCCCCEEEEEeCCcEEEEEEEEeccccCCCCcEEEeeeeeeeEEEEEECCCCcccCceEE
Q 033685 6 NFINLTETPEAHVFKTDLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKA 85 (113)
Q Consensus 6 p~~dv~e~~~~~~i~~~lpG~~~~~i~v~v~~~~~L~I~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~A 85 (113)
|+++++++.+.+.|.+.+||. ++++|.+.. +.|.|++.... . ...|.-.+.|...|+++..+.
T Consensus 1 p~~~W~Qt~~~V~i~i~~~~~--~~~~V~~~~-~~l~v~~~~~~----~----------~~~y~~~~~L~~~I~pe~s~~ 63 (108)
T cd06465 1 PPVLWAQRSDVVYLTIELPDA--KDPKIKLEP-TSLSFKAKGGG----G----------GKKYEFDLEFYKEIDPEESKY 63 (108)
T ss_pred CceeeeECCCEEEEEEEeCCC--CCcEEEEEC-CEEEEEEEcCC----C----------CeeEEEEeEhhhhccccccEE
Confidence 689999999999999999998 889999998 59999975321 1 113667789999999999999
Q ss_pred EEeCCEEEEEEeCCC
Q 033685 86 SMESGVLTVTVPKVE 100 (113)
Q Consensus 86 ~~~~GiL~I~~pk~~ 100 (113)
++.++.|.|+|.|..
T Consensus 64 ~v~~~kveI~L~K~~ 78 (108)
T cd06465 64 KVTGRQIEFVLRKKE 78 (108)
T ss_pred EecCCeEEEEEEECC
Confidence 999999999999987
No 29
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=98.47 E-value=3e-06 Score=50.53 Aligned_cols=77 Identities=19% Similarity=0.230 Sum_probs=64.7
Q ss_pred cEEEcCCeEEEEEEcCCCCCCCEEEEEeCCcEEEEEEEEeccccCCCCcEEEeeeeeeeEEEEEECCCCcccCceEEEEe
Q 033685 9 NLTETPEAHVFKTDLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASME 88 (113)
Q Consensus 9 dv~e~~~~~~i~~~lpG~~~~~i~v~v~~~~~L~I~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~A~~~ 88 (113)
|++++++...|.+.++|+.++++.|.+.+ +.|.+++.... + ..|.-.+.|...++++..+.+..
T Consensus 1 dW~Q~~~~V~iti~~k~~~~~~~~v~~~~-~~l~~~~~~~~-----~----------~~y~~~~~L~~~I~p~~s~~~v~ 64 (84)
T cd06489 1 DWYQTESQVVITILIKNVKPEDVSVEFEK-RELSATVKLPS-----G----------NDYSLKLHLLHPIVPEQSSYKIL 64 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEeC-CEEEEEEECCC-----C----------CcEEEeeecCceecchhcEEEEe
Confidence 67899999999999999999999999998 59999976421 1 13666788999999998888888
Q ss_pred CCEEEEEEeCCCC
Q 033685 89 SGVLTVTVPKVEV 101 (113)
Q Consensus 89 ~GiL~I~~pk~~~ 101 (113)
++-+.|.|.|..+
T Consensus 65 ~~kiei~L~K~~~ 77 (84)
T cd06489 65 STKIEIKLKKTEA 77 (84)
T ss_pred CcEEEEEEEcCCC
Confidence 9999999999754
No 30
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=98.45 E-value=1.7e-06 Score=63.27 Aligned_cols=65 Identities=31% Similarity=0.541 Sum_probs=57.0
Q ss_pred CCeEEEEEEcCCC-CCCCEEEEEeCCcEEEEEEEEeccccCCCCcEEEeeeeeeeEEEEEECCCCcccCceEEEE--eCC
Q 033685 14 PEAHVFKTDLPGL-RKEEVKVEVEDDRVLQISGQRNIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASM--ESG 90 (113)
Q Consensus 14 ~~~~~i~~~lpG~-~~~~i~v~v~~~~~L~I~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~A~~--~~G 90 (113)
.+.++|++.|||+ +..+|++.+.+ +.|.|..... .|.-.+.||..|+.+.++|.| +.+
T Consensus 260 p~~lvv~i~LP~~~s~~~i~LdV~~-~~l~l~~~~~------------------~y~L~l~LP~~V~~~~~~Akf~~~~~ 320 (328)
T PF08190_consen 260 PEELVVEIELPGVESASDIDLDVSE-DRLSLSSPKP------------------KYRLDLPLPYPVDEDNGKAKFDKKTK 320 (328)
T ss_pred CceEEEEEECCCcCccceeEEEEeC-CEEEEEeCCC------------------ceEEEccCCCcccCCCceEEEccCCC
Confidence 5789999999999 78999999999 5999984432 377889999999999999999 568
Q ss_pred EEEEEEe
Q 033685 91 VLTVTVP 97 (113)
Q Consensus 91 iL~I~~p 97 (113)
.|+|++|
T Consensus 321 ~L~vtlp 327 (328)
T PF08190_consen 321 TLTVTLP 327 (328)
T ss_pred EEEEEEE
Confidence 9999998
No 31
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=98.23 E-value=4e-05 Score=46.10 Aligned_cols=79 Identities=16% Similarity=0.071 Sum_probs=66.4
Q ss_pred eecEEEcCCeEEEEEEcCCCCCCCEEEEEeCCcEEEEEEEEeccccCCCCcEEEeeeeeeeEEEEEECCCCcccCceEEE
Q 033685 7 FINLTETPEAHVFKTDLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKAS 86 (113)
Q Consensus 7 ~~dv~e~~~~~~i~~~lpG~~~~~i~v~v~~~~~L~I~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~A~ 86 (113)
..|++++++...|.+.+.|++++++++.+++ +.|.++..... ...|.-.+.|-..|+++..+.+
T Consensus 2 R~dW~Qs~~~V~ItI~~k~~~~~~~~v~~~~-~~l~v~~~~~~---------------~~~y~~~l~L~~~I~~~~s~~~ 65 (87)
T cd06488 2 RHDWHQTGSHVVVSVYAKNSNPELSVVEANS-TVLTIHIVFEG---------------NKEFQLDIELWGVIDVEKSSVN 65 (87)
T ss_pred CccEeeCCCEEEEEEEECcCCccceEEEecC-CEEEEEEECCC---------------CceEEEEeeccceEChhHcEEE
Confidence 3689999999999999999999999999998 58888754321 1137778899999999998888
Q ss_pred EeCCEEEEEEeCCCC
Q 033685 87 MESGVLTVTVPKVEV 101 (113)
Q Consensus 87 ~~~GiL~I~~pk~~~ 101 (113)
...+-+.|++.|..+
T Consensus 66 v~~~kvei~L~K~~~ 80 (87)
T cd06488 66 MLPTKVEIKLRKAEP 80 (87)
T ss_pred ecCcEEEEEEEeCCC
Confidence 899999999999864
No 32
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=98.21 E-value=5e-05 Score=45.86 Aligned_cols=79 Identities=11% Similarity=0.205 Sum_probs=64.1
Q ss_pred eecEEEcCCeEEEEEEcCCCCC---CCEEEEEeCCcEEEEEEEEeccccCCCCcEEEeeeeeeeEEEEEE-CCCCcccCc
Q 033685 7 FINLTETPEAHVFKTDLPGLRK---EEVKVEVEDDRVLQISGQRNIEKEDKNDTWHRVERSSGMFSRRFR-LPENVKMDQ 82 (113)
Q Consensus 7 ~~dv~e~~~~~~i~~~lpG~~~---~~i~v~v~~~~~L~I~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~-lP~~vd~~~ 82 (113)
..++.++++...|.+.+|+... ++++|.+.. +.|.+++... ++ ..|.-.+. |-..++++.
T Consensus 3 ~y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~~-~~l~v~~~~~-----~~----------~~~~~~~~~L~~~I~~e~ 66 (92)
T cd06468 3 KYAWDQSDKFVKIYITLKGVHQLPKENIQVEFTE-RSFELKVHDL-----NG----------KNYRFTINRLLKKIDPEK 66 (92)
T ss_pred eeeeecCCCEEEEEEEccCCCcCCcccEEEEecC-CEEEEEEECC-----CC----------cEEEEEehHhhCccCccc
Confidence 4688999999999999999876 999999998 5999987421 11 12444554 889999999
Q ss_pred eEEEEeCCEEEEEEeCCCC
Q 033685 83 IKASMESGVLTVTVPKVEV 101 (113)
Q Consensus 83 i~A~~~~GiL~I~~pk~~~ 101 (113)
.+.+..++-+.|++.|..+
T Consensus 67 s~~~~~~~ki~i~L~K~~~ 85 (92)
T cd06468 67 SSFKVKTDRIVITLAKKKE 85 (92)
T ss_pred cEEEEeCCEEEEEEEeCCC
Confidence 9999999999999999865
No 33
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=98.04 E-value=9.9e-05 Score=43.77 Aligned_cols=74 Identities=24% Similarity=0.303 Sum_probs=60.3
Q ss_pred cEEEcCCeEEEEEEcC-CCCCCCEEEEEeCCcEEEEEEEEeccccCCCCcEEEeeeeeeeEEEEEECCCCcccCceEEEE
Q 033685 9 NLTETPEAHVFKTDLP-GLRKEEVKVEVEDDRVLQISGQRNIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASM 87 (113)
Q Consensus 9 dv~e~~~~~~i~~~lp-G~~~~~i~v~v~~~~~L~I~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~A~~ 87 (113)
.+.++++...|.+.+| ++.++++.+.+.+ +.|.|+... + .+.-.-.|...|+++...-++
T Consensus 2 ~W~Qt~~~V~i~i~~~~~~~~~dv~v~~~~-~~l~v~~~~-------~-----------~~~l~~~L~~~I~~~~s~w~~ 62 (85)
T cd06467 2 SWTQTLDEVTVTIPLPEGTKSKDVKVEITP-KHLKVGVKG-------G-----------EPLLDGELYAKVKVDESTWTL 62 (85)
T ss_pred EEEeeCCEEEEEEECCCCCcceeEEEEEEc-CEEEEEECC-------C-----------CceEcCcccCceeEcCCEEEE
Confidence 5789999999999998 7899999999998 599998532 0 011233588899999888888
Q ss_pred eC-CEEEEEEeCCCC
Q 033685 88 ES-GVLTVTVPKVEV 101 (113)
Q Consensus 88 ~~-GiL~I~~pk~~~ 101 (113)
.+ ..|.|+++|..+
T Consensus 63 ~~~~~v~i~L~K~~~ 77 (85)
T cd06467 63 EDGKLLEITLEKRNE 77 (85)
T ss_pred eCCCEEEEEEEECCC
Confidence 88 999999999865
No 34
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=98.01 E-value=0.00022 Score=44.58 Aligned_cols=79 Identities=15% Similarity=0.119 Sum_probs=63.3
Q ss_pred cceecEEEcCCeEEEEEEcCCCCCCCEEEEEeCCcEEEEEEEEeccccCCCCcEEEeeeeeeeEEEEEECCCCcccCceE
Q 033685 5 PNFINLTETPEAHVFKTDLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIK 84 (113)
Q Consensus 5 ~p~~dv~e~~~~~~i~~~lpG~~~~~i~v~v~~~~~L~I~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~ 84 (113)
+|++++.++.+.+.|++.+|+ .++++|.+.+ +.|.++|.-. ++. .|.-.+.|=..|+++..+
T Consensus 1 ~p~v~WaQr~~~V~ltI~v~d--~~d~~v~l~~-~~l~f~~~~~-----~g~----------~y~~~l~l~~~I~pe~Sk 62 (106)
T cd00237 1 PAKTLWYDRRDYVFIEFCVED--SKDVKVDFEK-SKLTFSCLNG-----DNV----------KIYNEIELYDRVDPNDSK 62 (106)
T ss_pred CCcceeeECCCEEEEEEEeCC--CCCcEEEEec-CEEEEEEECC-----CCc----------EEEEEEEeecccCcccCe
Confidence 589999999999999999998 5899999998 5999998431 111 244567788889999777
Q ss_pred EEEeCCEEEEEEeCCCC
Q 033685 85 ASMESGVLTVTVPKVEV 101 (113)
Q Consensus 85 A~~~~GiL~I~~pk~~~ 101 (113)
.+...--+.|.+.|+.+
T Consensus 63 ~~v~~r~ve~~L~K~~~ 79 (106)
T cd00237 63 HKRTDRSILCCLRKGKE 79 (106)
T ss_pred EEeCCceEEEEEEeCCC
Confidence 77777789999999864
No 35
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=97.89 E-value=0.00031 Score=41.96 Aligned_cols=75 Identities=15% Similarity=0.177 Sum_probs=58.6
Q ss_pred ecEEEcCCeEEEEEEcC-CCCCCCEEEEEeCCcEEEEEEEEeccccCCCCcEEEeeeeeeeEEEEEECCCCcccCceEEE
Q 033685 8 INLTETPEAHVFKTDLP-GLRKEEVKVEVEDDRVLQISGQRNIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKAS 86 (113)
Q Consensus 8 ~dv~e~~~~~~i~~~lp-G~~~~~i~v~v~~~~~L~I~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~A~ 86 (113)
+++.++.+...|.+.+| |+..++++|.+.. +.|.+... ... .+ -.-.|...++++...=+
T Consensus 1 Y~W~Qt~~~V~v~i~~p~~~~~~dv~v~~~~-~~l~v~~~--~~~---------------~~-~~g~L~~~I~~d~Stw~ 61 (85)
T cd06493 1 YYWQQTEEDLTLTIRLPEDTTKEDIRIKFLP-DHISIALK--DQA---------------PL-LEGKLYSSIDHESSTWI 61 (85)
T ss_pred CccEEeCCEEEEEEECCCCCChhhEEEEEec-CEEEEEeC--CCC---------------eE-EeCcccCcccccCcEEE
Confidence 36789999999999996 9999999999998 58988742 000 01 23368889999977777
Q ss_pred EeCC-EEEEEEeCCCC
Q 033685 87 MESG-VLTVTVPKVEV 101 (113)
Q Consensus 87 ~~~G-iL~I~~pk~~~ 101 (113)
.++| .|.|.|.|..+
T Consensus 62 i~~~~~l~i~L~K~~~ 77 (85)
T cd06493 62 IKENKSLEVSLIKKDE 77 (85)
T ss_pred EeCCCEEEEEEEECCC
Confidence 7666 79999999865
No 36
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=97.73 E-value=0.0014 Score=40.10 Aligned_cols=78 Identities=15% Similarity=0.251 Sum_probs=61.0
Q ss_pred cceecEEEcCCeEEEEEEcC-CCCCCCEEEEEeCCcEEEEEEEEeccccCCCCcEEEeeeeeeeEEEEEECCCCcccCce
Q 033685 5 PNFINLTETPEAHVFKTDLP-GLRKEEVKVEVEDDRVLQISGQRNIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQI 83 (113)
Q Consensus 5 ~p~~dv~e~~~~~~i~~~lp-G~~~~~i~v~v~~~~~L~I~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i 83 (113)
.+...+.++.+...|.+.+| |...+++.|.+.. +.|.|...- . .. +.. .|...|+++..
T Consensus 5 ~~~y~W~QT~~eV~v~i~lp~~~~~kdv~V~i~~-~~l~V~~~g--------~-~~--------l~G--~L~~~I~~des 64 (93)
T cd06494 5 TPWGCWYQTMDEVFIEVNVPPGTRAKDVKCKLGS-RDISLAVKG--------Q-EV--------LKG--KLFDSVVADEC 64 (93)
T ss_pred CCCcEEEeEcCEEEEEEECCCCCceeeEEEEEEc-CEEEEEECC--------E-EE--------EcC--cccCccCcccC
Confidence 45678999999999999998 8999999999999 599998411 0 00 111 57888999987
Q ss_pred EEEEeCCE-EEEEEeCCCCC
Q 033685 84 KASMESGV-LTVTVPKVEVT 102 (113)
Q Consensus 84 ~A~~~~Gi-L~I~~pk~~~~ 102 (113)
.=++++|- |.|.|.|....
T Consensus 65 tWtled~k~l~I~L~K~~~~ 84 (93)
T cd06494 65 TWTLEDRKLIRIVLTKSNRD 84 (93)
T ss_pred EEEEECCcEEEEEEEeCCCC
Confidence 77788775 89999998643
No 37
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.46 E-value=0.0016 Score=48.64 Aligned_cols=80 Identities=20% Similarity=0.216 Sum_probs=66.3
Q ss_pred ceecEEEcCCeEEEEEEcCCCCCCCEEEEEeCCcEEEEEEEEeccccCCCCcEEEeeeeeeeEEEEEECCCCcccCceEE
Q 033685 6 NFINLTETPEAHVFKTDLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKA 85 (113)
Q Consensus 6 p~~dv~e~~~~~~i~~~lpG~~~~~i~v~v~~~~~L~I~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~A 85 (113)
+..||+++++++.|.+.+.|+.++++.|.+.+ +.|.|+...... ..|...+.|-..|+++..+.
T Consensus 157 ~r~dWyQs~~~V~i~i~~k~~~~~~~~v~~~~-~~l~v~~~~~~~---------------~~y~~~~~L~~~I~p~~s~~ 220 (356)
T PLN03088 157 YRHEFYQKPEEVVVTVFAKGVPAENVNVDFGE-QILSVVIEVPGE---------------DAYHLQPRLFGKIIPDKCKY 220 (356)
T ss_pred cccceeecCCEEEEEEEecCCChHHcEEEeec-CEEEEEEecCCC---------------cceeecccccccccccccEE
Confidence 45789999999999999999999999999998 589888643211 13556678889999999888
Q ss_pred EEeCCEEEEEEeCCCC
Q 033685 86 SMESGVLTVTVPKVEV 101 (113)
Q Consensus 86 ~~~~GiL~I~~pk~~~ 101 (113)
+....-++|+|.|..+
T Consensus 221 ~v~~~Kiei~l~K~~~ 236 (356)
T PLN03088 221 EVLSTKIEIRLAKAEP 236 (356)
T ss_pred EEecceEEEEEecCCC
Confidence 8888899999998754
No 38
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]
Probab=97.41 E-value=0.00095 Score=45.31 Aligned_cols=79 Identities=18% Similarity=0.163 Sum_probs=63.9
Q ss_pred cceecEEEcCCeEEEEEEcCCCCCCCEEEEEeCCcEEEEEEEEeccccCCCCcEEEeeeeeeeEEEEEECCCCcccCceE
Q 033685 5 PNFINLTETPEAHVFKTDLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIK 84 (113)
Q Consensus 5 ~p~~dv~e~~~~~~i~~~lpG~~~~~i~v~v~~~~~L~I~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~ 84 (113)
.+..|++++.+..+|.+-.+++.+++++|.+.+ +.|.+..+.+... .|.-...|-..|.++..+
T Consensus 3 k~r~DwyQt~~~vvIti~~k~v~~~~v~v~~s~-~~l~~~~~~~~g~---------------~~~l~~~L~~~I~pe~~s 66 (196)
T KOG1309|consen 3 KIRHDWYQTETSVVITIFAKNVPKEDVNVEISE-NTLSIVIQLPSGS---------------EYNLQLKLYHEIIPEKSS 66 (196)
T ss_pred cccceeecCCceEEEEEEecCCCccceeEEeec-ceEEEEEecCCch---------------hhhhhHHhccccccccee
Confidence 457899999999999999999999999999998 6999887664322 244555577788888777
Q ss_pred EEEeCCEEEEEEeCC
Q 033685 85 ASMESGVLTVTVPKV 99 (113)
Q Consensus 85 A~~~~GiL~I~~pk~ 99 (113)
-+.----++|+|+|.
T Consensus 67 ~k~~stKVEI~L~K~ 81 (196)
T KOG1309|consen 67 FKVFSTKVEITLAKA 81 (196)
T ss_pred eEeeeeeEEEEeccc
Confidence 777777888999885
No 39
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=97.29 E-value=0.013 Score=35.13 Aligned_cols=76 Identities=13% Similarity=0.142 Sum_probs=55.5
Q ss_pred ecEEEcCCeEEEEEEcCCC--CCCCEEEEEeCCcEEEEEEEEeccccCCCCcEEEeeeeeeeEEEEEECCCCcccCceEE
Q 033685 8 INLTETPEAHVFKTDLPGL--RKEEVKVEVEDDRVLQISGQRNIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKA 85 (113)
Q Consensus 8 ~dv~e~~~~~~i~~~lpG~--~~~~i~v~v~~~~~L~I~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~A 85 (113)
.|++++++...|.+-..+. +..++.+.... +.|.|+-... . ..|...+.|-..++++. +.
T Consensus 1 ~DWyQt~~~Vtitiy~K~~~~~~~~v~v~~~~-~~l~v~~~~~-~---------------~~~~~~~~L~~~I~~~~-~~ 62 (87)
T cd06490 1 YDWFQTDSEVTIVVYTKSKGNPADIVIVDDQQ-RELRVEIILG-D---------------KSYLLHLDLSNEVQWPC-EV 62 (87)
T ss_pred CCceECCCEEEEEEEEcccCCCCccEEEECCC-CEEEEEEECC-C---------------ceEEEeeeccccCCCCc-EE
Confidence 4899999999999998864 44555566565 4888875432 1 12667778888888775 55
Q ss_pred EEe--CCEEEEEEeCCCC
Q 033685 86 SME--SGVLTVTVPKVEV 101 (113)
Q Consensus 86 ~~~--~GiL~I~~pk~~~ 101 (113)
++. -|-++|+|.|..+
T Consensus 63 ~~~~~~~KVEI~L~K~e~ 80 (87)
T cd06490 63 RISTETGKIELVLKKKEP 80 (87)
T ss_pred EEcccCceEEEEEEcCCC
Confidence 554 8899999999865
No 40
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=96.83 E-value=0.029 Score=33.72 Aligned_cols=74 Identities=22% Similarity=0.286 Sum_probs=54.7
Q ss_pred cEEEcCCeEEEEEEcC-C--CCCCCEEEEEeCCcEEEEEEEEeccccCCCCcEEEeeeeeeeEEEEEECCCCcccCceEE
Q 033685 9 NLTETPEAHVFKTDLP-G--LRKEEVKVEVEDDRVLQISGQRNIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKA 85 (113)
Q Consensus 9 dv~e~~~~~~i~~~lp-G--~~~~~i~v~v~~~~~L~I~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~A 85 (113)
.+.++.+...|.+.+| + ....+++|.+.. +.|.|.-.-. ... + .=.|...|+++...=
T Consensus 2 ~W~QT~~ev~v~v~l~~~~~~~~kdv~v~i~~-~~l~v~~~g~--------~~~--------i--~G~L~~~V~~des~W 62 (87)
T cd06492 2 RWTQTLSEVELKVPFKVSFRLKGKDVVVDIQR-KHLKVGLKGQ--------PPI--------I--DGELYNEVKVEESSW 62 (87)
T ss_pred ccEeecCEEEEEEECCCCCCccceEEEEEEec-CEEEEEECCC--------ceE--------E--eCcccCcccccccEE
Confidence 4567888999999996 4 788999999998 5898863211 000 1 225778888887666
Q ss_pred EEeCC-EEEEEEeCCCC
Q 033685 86 SMESG-VLTVTVPKVEV 101 (113)
Q Consensus 86 ~~~~G-iL~I~~pk~~~ 101 (113)
++++| .|.|.|-|..+
T Consensus 63 tled~~~l~i~L~K~~~ 79 (87)
T cd06492 63 LIEDGKVVTVNLEKINK 79 (87)
T ss_pred EEeCCCEEEEEEEECCC
Confidence 67886 89999999864
No 41
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=95.83 E-value=0.22 Score=30.84 Aligned_cols=79 Identities=10% Similarity=0.240 Sum_probs=58.1
Q ss_pred ceecEEEcCCeEEEEEEcC-CC-CCCCEEEEEeCCcEEEEEEEEeccccCCCCcEEEeeeeeeeEEEEEECCCCcccCce
Q 033685 6 NFINLTETPEAHVFKTDLP-GL-RKEEVKVEVEDDRVLQISGQRNIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQI 83 (113)
Q Consensus 6 p~~dv~e~~~~~~i~~~lp-G~-~~~~i~v~v~~~~~L~I~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i 83 (113)
..+.+.++.+...|.+.+| |. ..+++.|.+.. +.|.|.-... ++.... +.. .|+..|+++..
T Consensus 5 e~Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~i~~-~~l~v~~~~~-----~~~~~~--------i~G--~L~~~V~~des 68 (102)
T cd06495 5 ENYTWSQDYTDVEVRVPVPKDVVKGRQVSVDLQS-SSIRVSVRDG-----GGEKVL--------MEG--EFTHKINTENS 68 (102)
T ss_pred CceEEEeECCeEEEEEECCCCCccceEEEEEEEc-CEEEEEEecC-----CCCceE--------EeC--cccCcccCccc
Confidence 4678899999999999999 64 57899999998 5899885410 000000 111 47888998877
Q ss_pred EEEEeCC-EEEEEEeCCC
Q 033685 84 KASMESG-VLTVTVPKVE 100 (113)
Q Consensus 84 ~A~~~~G-iL~I~~pk~~ 100 (113)
.=+++|| .|.|+|-|..
T Consensus 69 ~Wtled~~~l~I~L~K~~ 86 (102)
T cd06495 69 LWSLEPGKCVLLSLSKCS 86 (102)
T ss_pred eEEEeCCCEEEEEEEECC
Confidence 7777886 5899999975
No 42
>PF14913 DPCD: DPCD protein family
Probab=93.76 E-value=1 Score=31.01 Aligned_cols=78 Identities=13% Similarity=0.278 Sum_probs=59.2
Q ss_pred cceecEEEcCCeEEEEEEcCCCCCCCEEEEEeCC-cEEEEEEEEeccccCCCCcEEEeeeeeeeEEEEEECCCC------
Q 033685 5 PNFINLTETPEAHVFKTDLPGLRKEEVKVEVEDD-RVLQISGQRNIEKEDKNDTWHRVERSSGMFSRRFRLPEN------ 77 (113)
Q Consensus 5 ~p~~dv~e~~~~~~i~~~lpG~~~~~i~v~v~~~-~~L~I~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~------ 77 (113)
+|-+-=.++...|..++.=--+..+-.+|.++++ +.++|+...+ .|.+.|.+|+-
T Consensus 86 nP~~~r~dTk~~fqWRIRNLPYP~dvYsVtvd~~~r~ivvRTtNK------------------KYyKk~~IPDl~R~~l~ 147 (194)
T PF14913_consen 86 NPIFVRRDTKTSFQWRIRNLPYPKDVYSVTVDEDERCIVVRTTNK------------------KYYKKFSIPDLDRCGLP 147 (194)
T ss_pred CCEEEEEcCccceEEEEccCCCCccceEEEEcCCCcEEEEECcCc------------------cceeEecCCcHHhhCCC
Confidence 4555556778889999987667899999999876 5688874432 36678888842
Q ss_pred cccCceEEEEeCCEEEEEEeCCC
Q 033685 78 VKMDQIKASMESGVLTVTVPKVE 100 (113)
Q Consensus 78 vd~~~i~A~~~~GiL~I~~pk~~ 100 (113)
.+.+.++..+.+..|.|+..|..
T Consensus 148 l~~~~ls~~h~nNTLIIsYkKP~ 170 (194)
T PF14913_consen 148 LEQSALSFAHQNNTLIISYKKPK 170 (194)
T ss_pred cchhhceeeeecCeEEEEecCcH
Confidence 46777888889999999999864
No 43
>KOG1667 consensus Zn2+-binding protein Melusin/RAR1, contains CHORD domain [General function prediction only]
Probab=90.05 E-value=3.1 Score=30.18 Aligned_cols=81 Identities=15% Similarity=0.148 Sum_probs=65.6
Q ss_pred eecEEEcCCeEEEEEEcCCCCCCCEEEEEeCCcEEEEEEEEeccccCCCCcEEEeeeeeeeEEEEEECCCCcccCceEEE
Q 033685 7 FINLTETPEAHVFKTDLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKAS 86 (113)
Q Consensus 7 ~~dv~e~~~~~~i~~~lpG~~~~~i~v~v~~~~~L~I~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~A~ 86 (113)
.-||..+++.++|.+..-|.-++--.|..+. ..|.|+-..... -..|...+.|=.-|+++..++.
T Consensus 216 R~Dwhqt~~~Vti~VY~k~~lpe~s~iean~-~~l~V~ivf~~g--------------na~fd~d~kLwgvvnve~s~v~ 280 (320)
T KOG1667|consen 216 RHDWHQTNGFVTINVYAKGALPETSNIEANG-TTLHVSIVFGFG--------------NASFDLDYKLWGVVNVEESSVV 280 (320)
T ss_pred hhhhhhcCCeEEEEEEeccCCcccceeeeCC-eEEEEEEEecCC--------------CceeeccceeeeeechhhceEE
Confidence 4589999999999999999988888888887 688887554211 1247778888888999999999
Q ss_pred EeCCEEEEEEeCCCCC
Q 033685 87 MESGVLTVTVPKVEVT 102 (113)
Q Consensus 87 ~~~GiL~I~~pk~~~~ 102 (113)
+-.--.+|+|+|..+.
T Consensus 281 m~~tkVEIsl~k~ep~ 296 (320)
T KOG1667|consen 281 MGETKVEISLKKAEPG 296 (320)
T ss_pred eecceEEEEEeccCCC
Confidence 9999999999998764
No 44
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=89.23 E-value=1.1 Score=26.85 Aligned_cols=33 Identities=15% Similarity=0.233 Sum_probs=29.6
Q ss_pred eEEEEEECCCCcccCceEEEEeCCEEEEEEeCCC
Q 033685 67 MFSRRFRLPENVKMDQIKASMESGVLTVTVPKVE 100 (113)
Q Consensus 67 ~f~r~~~lP~~vd~~~i~A~~~~GiL~I~~pk~~ 100 (113)
.|.-...|| +++++.|+.++.+|.|+|+--+..
T Consensus 9 ~~~v~adlP-G~~kedI~V~v~~~~L~I~ger~~ 41 (87)
T cd06482 9 NVLASVDVC-GFEPDQVKVKVKDGKVQVSAEREN 41 (87)
T ss_pred EEEEEEECC-CCCHHHeEEEEECCEEEEEEEEec
Confidence 477788999 899999999999999999998764
No 45
>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones]
Probab=88.78 E-value=3 Score=28.42 Aligned_cols=80 Identities=9% Similarity=0.165 Sum_probs=58.0
Q ss_pred eecceecEEEcCCeEEEEEEcCCCCCCCEEEEEeCCcEEEEEEEEeccccCCCCcEEEeeeeeeeEEEEEECCCCcccCc
Q 033685 3 LIPNFINLTETPEAHVFKTDLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQ 82 (113)
Q Consensus 3 ~~~p~~dv~e~~~~~~i~~~lpG~~~~~i~v~v~~~~~L~I~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~ 82 (113)
..+|.+.+.+..+-..+++.++.. .+..|.++. +.|+++|.-.... -.|...|.|=..|++++
T Consensus 5 ~~~p~v~Waqr~~~vyltv~Ved~--~d~~v~~e~-~~l~fs~k~~~d~--------------~~~~~~ief~~eIdpe~ 67 (180)
T KOG3158|consen 5 MQPPEVKWAQRRDLVYLTVCVEDA--KDVHVNLEP-SKLTFSCKSGADN--------------HKYENEIEFFDEIDPEK 67 (180)
T ss_pred ccCCcchhhhhcCeEEEEEEeccC--ccceeeccc-cEEEEEeccCCCc--------------eeeEEeeehhhhcCHhh
Confidence 358999999999999999999864 556677777 5899998864221 13666788888899998
Q ss_pred eEEEEeCCEEEEEEeCCC
Q 033685 83 IKASMESGVLTVTVPKVE 100 (113)
Q Consensus 83 i~A~~~~GiL~I~~pk~~ 100 (113)
.+-+-. +-....++++.
T Consensus 68 sk~k~~-~r~if~i~~K~ 84 (180)
T KOG3158|consen 68 SKHKRT-SRSIFCILRKK 84 (180)
T ss_pred cccccc-ceEEEEEEEcc
Confidence 776655 55555555443
No 46
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=88.04 E-value=1.3 Score=26.37 Aligned_cols=33 Identities=15% Similarity=0.146 Sum_probs=29.5
Q ss_pred eEEEEEECCCCcccCceEEEEeCCEEEEEEeCCC
Q 033685 67 MFSRRFRLPENVKMDQIKASMESGVLTVTVPKVE 100 (113)
Q Consensus 67 ~f~r~~~lP~~vd~~~i~A~~~~GiL~I~~pk~~ 100 (113)
.|.-.+.|| +++++.|+.++++|.|+|+--+..
T Consensus 8 ~~~v~~dlp-G~~~edI~V~v~~~~L~I~ge~~~ 40 (83)
T cd06477 8 MFQILLDVV-QFRPEDIIIQVFEGWLLIKGQHGV 40 (83)
T ss_pred eEEEEEEcC-CCCHHHeEEEEECCEEEEEEEEcc
Confidence 477889999 899999999999999999998654
No 47
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=87.77 E-value=1.6 Score=25.74 Aligned_cols=32 Identities=6% Similarity=0.147 Sum_probs=28.8
Q ss_pred eEEEEEECCCCcccCceEEEEeCCEEEEEEeCC
Q 033685 67 MFSRRFRLPENVKMDQIKASMESGVLTVTVPKV 99 (113)
Q Consensus 67 ~f~r~~~lP~~vd~~~i~A~~~~GiL~I~~pk~ 99 (113)
.|.-.+.|| ++.++.|+.++.++.|+|+-.+.
T Consensus 8 ~~~v~~dlp-G~~~edI~V~v~~~~L~I~g~~~ 39 (83)
T cd06478 8 RFSVNLDVK-HFSPEELSVKVLGDFVEIHGKHE 39 (83)
T ss_pred eEEEEEECC-CCCHHHeEEEEECCEEEEEEEEc
Confidence 588899999 99999999999999999998654
No 48
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=87.52 E-value=3.9 Score=24.30 Aligned_cols=36 Identities=19% Similarity=0.271 Sum_probs=30.9
Q ss_pred eeEEEEEECCCCcccCceEEEEeCCEEEEEEeCCCCC
Q 033685 66 GMFSRRFRLPENVKMDQIKASMESGVLTVTVPKVEVT 102 (113)
Q Consensus 66 ~~f~r~~~lP~~vd~~~i~A~~~~GiL~I~~pk~~~~ 102 (113)
..|.-.+.|| ++..+.++..++++.|+|+-.+....
T Consensus 11 ~~~~v~~~lP-G~~kedi~v~~~~~~L~I~g~~~~~~ 46 (90)
T cd06470 11 NNYRITLAVA-GFSEDDLEIEVENNQLTVTGKKADEE 46 (90)
T ss_pred CeEEEEEECC-CCCHHHeEEEEECCEEEEEEEEcccc
Confidence 3588899999 79999999999999999998776543
No 49
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=87.19 E-value=1.6 Score=26.01 Aligned_cols=32 Identities=3% Similarity=0.106 Sum_probs=28.7
Q ss_pred eEEEEEECCCCcccCceEEEEeCCEEEEEEeCC
Q 033685 67 MFSRRFRLPENVKMDQIKASMESGVLTVTVPKV 99 (113)
Q Consensus 67 ~f~r~~~lP~~vd~~~i~A~~~~GiL~I~~pk~ 99 (113)
.|.-.+.|| +++++.++.+..+|.|+|+-.+.
T Consensus 11 ~~~v~~dlp-G~~~edi~V~v~~~~L~I~g~~~ 42 (86)
T cd06497 11 KFTIYLDVK-HFSPEDLTVKVLDDYVEIHGKHS 42 (86)
T ss_pred EEEEEEECC-CCCHHHeEEEEECCEEEEEEEEc
Confidence 588899999 89999999999999999998654
No 50
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=87.17 E-value=2.5 Score=25.00 Aligned_cols=32 Identities=13% Similarity=0.163 Sum_probs=28.7
Q ss_pred eEEEEEECCCCcccCceEEEEeCCEEEEEEeCC
Q 033685 67 MFSRRFRLPENVKMDQIKASMESGVLTVTVPKV 99 (113)
Q Consensus 67 ~f~r~~~lP~~vd~~~i~A~~~~GiL~I~~pk~ 99 (113)
.|.-.+.|| ++.++.|+.+++|+.|+|+--+.
T Consensus 8 ~y~v~~dlp-G~~~edi~V~v~~~~L~I~g~~~ 39 (83)
T cd06476 8 KYQVFLDVC-HFTPDEITVRTVDNLLEVSARHP 39 (83)
T ss_pred eEEEEEEcC-CCCHHHeEEEEECCEEEEEEEEc
Confidence 588899999 89999999999999999998764
No 51
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=85.66 E-value=2.6 Score=24.90 Aligned_cols=33 Identities=9% Similarity=0.202 Sum_probs=29.3
Q ss_pred eEEEEEECCCCcccCceEEEEeCCEEEEEEeCCC
Q 033685 67 MFSRRFRLPENVKMDQIKASMESGVLTVTVPKVE 100 (113)
Q Consensus 67 ~f~r~~~lP~~vd~~~i~A~~~~GiL~I~~pk~~ 100 (113)
.|.-.+.|| +++++.++.+.+++.|+|+--+..
T Consensus 9 ~~~v~~dlp-G~~pedi~V~v~~~~L~I~ger~~ 41 (81)
T cd06479 9 TYQFAVDVS-DFSPEDIIVTTSNNQIEVHAEKLA 41 (81)
T ss_pred eEEEEEECC-CCCHHHeEEEEECCEEEEEEEEec
Confidence 477889999 899999999999999999987653
No 52
>KOG2265 consensus Nuclear distribution protein NUDC [Signal transduction mechanisms]
Probab=85.56 E-value=9.3 Score=26.08 Aligned_cols=77 Identities=18% Similarity=0.275 Sum_probs=54.7
Q ss_pred ceecEEEcCCeEEEEEEcC-CC-CCCCEEEEEeCCcEEEEEEEEeccccCCCCcEEEeeeeeeeEEEEEECCCCcccCce
Q 033685 6 NFINLTETPEAHVFKTDLP-GL-RKEEVKVEVEDDRVLQISGQRNIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQI 83 (113)
Q Consensus 6 p~~dv~e~~~~~~i~~~lp-G~-~~~~i~v~v~~~~~L~I~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i 83 (113)
+-+.|..+=..+.|.+.+| |+ ...+|.+.+.+ +.|.|.-.-.. .+. .| .|...|..+..
T Consensus 19 ~~y~W~QtL~EV~i~i~vp~~~~ksk~v~~~Iq~-~hI~V~~kg~~--------~il----dG------~L~~~vk~des 79 (179)
T KOG2265|consen 19 EKYTWDQTLEEVEIQIPVPPGTAKSKDVHCSIQS-KHIKVGLKGQP--------PIL----DG------ELSHSVKVDES 79 (179)
T ss_pred cceeeeeehhheEEEeecCCCCcccceEEEEeee-eEEEEecCCCC--------cee----cC------ccccccccccc
Confidence 4556777888889999997 88 78899999998 68888733221 010 12 36677888877
Q ss_pred EEEEeCCEEEEEEeCCCC
Q 033685 84 KASMESGVLTVTVPKVEV 101 (113)
Q Consensus 84 ~A~~~~GiL~I~~pk~~~ 101 (113)
.=++++|.+.+.+-++..
T Consensus 80 ~WtiEd~k~i~i~l~K~~ 97 (179)
T KOG2265|consen 80 TWTIEDGKMIVILLKKSN 97 (179)
T ss_pred eEEecCCEEEEEEeeccc
Confidence 777799987777776643
No 53
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=84.37 E-value=2.6 Score=24.94 Aligned_cols=32 Identities=9% Similarity=0.192 Sum_probs=28.5
Q ss_pred eEEEEEECCCCcccCceEEEEeCCEEEEEEeCC
Q 033685 67 MFSRRFRLPENVKMDQIKASMESGVLTVTVPKV 99 (113)
Q Consensus 67 ~f~r~~~lP~~vd~~~i~A~~~~GiL~I~~pk~ 99 (113)
.|.-.+.+| +++++.++.+..++.|+|.--+.
T Consensus 8 ~~~v~~dlp-G~~~edi~V~v~~~~L~I~g~~~ 39 (84)
T cd06498 8 KFSVNLDVK-HFSPEELKVKVLGDFIEIHGKHE 39 (84)
T ss_pred eEEEEEECC-CCCHHHeEEEEECCEEEEEEEEc
Confidence 588889999 89999999999999999998653
No 54
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=84.03 E-value=3.5 Score=24.49 Aligned_cols=33 Identities=27% Similarity=0.426 Sum_probs=29.1
Q ss_pred eEEEEEECCCCcccCceEEEEeCCEEEEEEeCCC
Q 033685 67 MFSRRFRLPENVKMDQIKASMESGVLTVTVPKVE 100 (113)
Q Consensus 67 ~f~r~~~lP~~vd~~~i~A~~~~GiL~I~~pk~~ 100 (113)
.|.-.+.|| +++.+.++..++++.|+|+.-+..
T Consensus 11 ~~~i~~~lP-Gv~~edi~v~~~~~~L~I~g~~~~ 43 (93)
T cd06471 11 EYIVEADLP-GFKKEDIKLDYKDGYLTISAKRDE 43 (93)
T ss_pred EEEEEEECC-CCCHHHeEEEEECCEEEEEEEEcc
Confidence 577889999 799999999999999999887764
No 55
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=83.72 E-value=3 Score=24.33 Aligned_cols=34 Identities=18% Similarity=0.228 Sum_probs=30.4
Q ss_pred eEEEEEECCCCcccCceEEEEeCCEEEEEEeCCCC
Q 033685 67 MFSRRFRLPENVKMDQIKASMESGVLTVTVPKVEV 101 (113)
Q Consensus 67 ~f~r~~~lP~~vd~~~i~A~~~~GiL~I~~pk~~~ 101 (113)
.|.-.+.|| ++.++.|+.+.+++.|+|+-.+...
T Consensus 8 ~~~v~~dlp-G~~~edI~v~v~~~~L~I~g~~~~~ 41 (83)
T cd06526 8 KFQVTLDVK-GFKPEELKVKVSDNKLVVEGKHEER 41 (83)
T ss_pred eEEEEEECC-CCCHHHcEEEEECCEEEEEEEEeee
Confidence 588899999 6999999999999999999987654
No 56
>PF13349 DUF4097: Domain of unknown function (DUF4097)
Probab=82.55 E-value=11 Score=24.44 Aligned_cols=81 Identities=19% Similarity=0.261 Sum_probs=46.7
Q ss_pred eecEEEcCCeEEEEEEcCCCCCCCEEEEEeCCcEEEEEEEEeccccCCCCcEEEeeeeeeeEEEEEECCCCcccCceEEE
Q 033685 7 FINLTETPEAHVFKTDLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKAS 86 (113)
Q Consensus 7 ~~dv~e~~~~~~i~~~lpG~~~~~i~v~v~~~~~L~I~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~A~ 86 (113)
.+.|...++ ..+++...| +.+++...+ +.|.|+.......... .+..... ...-.-.+.||.....++++..
T Consensus 67 ~V~I~~~~~-~~i~v~~~~---k~~~~~~~~-~~L~I~~~~~~~~~~~--~~~~~~~-~~~~~i~I~lP~~~~l~~i~i~ 138 (166)
T PF13349_consen 67 DVEIKPSDD-DKIKVEYNG---KKPEISVEG-GTLTIKSKDRESFFFK--GFNFNNS-DNKSKITIYLPKDYKLDKIDIK 138 (166)
T ss_pred eEEEEEcCC-ccEEEEEcC---cEEEEEEcC-CEEEEEEecccccccc--eEEEccc-CCCcEEEEEECCCCceeEEEEE
Confidence 344554333 444444421 157888887 5899986622211111 1111111 2345568899999888899998
Q ss_pred EeCCEEEEE
Q 033685 87 MESGVLTVT 95 (113)
Q Consensus 87 ~~~GiL~I~ 95 (113)
-.+|-+.+.
T Consensus 139 ~~~G~i~i~ 147 (166)
T PF13349_consen 139 TSSGDITIE 147 (166)
T ss_pred eccccEEEE
Confidence 898977764
No 57
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=82.52 E-value=3.6 Score=24.42 Aligned_cols=33 Identities=12% Similarity=0.238 Sum_probs=29.6
Q ss_pred eEEEEEECCCCcccCceEEEEeCCEEEEEEeCCC
Q 033685 67 MFSRRFRLPENVKMDQIKASMESGVLTVTVPKVE 100 (113)
Q Consensus 67 ~f~r~~~lP~~vd~~~i~A~~~~GiL~I~~pk~~ 100 (113)
.|.-.+.|| +++++.++.++.++.|+|+--+..
T Consensus 11 ~~~v~~dlP-G~~~edi~V~v~~~~L~I~g~~~~ 43 (86)
T cd06475 11 RWKVSLDVN-HFAPEELVVKTKDGVVEITGKHEE 43 (86)
T ss_pred eEEEEEECC-CCCHHHEEEEEECCEEEEEEEECc
Confidence 588899999 999999999999999999997653
No 58
>PRK10743 heat shock protein IbpA; Provisional
Probab=82.37 E-value=4.5 Score=26.29 Aligned_cols=34 Identities=6% Similarity=0.199 Sum_probs=29.3
Q ss_pred eeEEEEEECCCCcccCceEEEEeCCEEEEEEeCCC
Q 033685 66 GMFSRRFRLPENVKMDQIKASMESGVLTVTVPKVE 100 (113)
Q Consensus 66 ~~f~r~~~lP~~vd~~~i~A~~~~GiL~I~~pk~~ 100 (113)
..|.-...|| +++.+++..++++|.|+|+--+..
T Consensus 45 ~~~~v~aelP-Gv~kedi~V~v~~~~LtI~ge~~~ 78 (137)
T PRK10743 45 NHYRIAIAVA-GFAESELEITAQDNLLVVKGAHAD 78 (137)
T ss_pred CEEEEEEECC-CCCHHHeEEEEECCEEEEEEEECc
Confidence 3577788999 999999999999999999987654
No 59
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=82.26 E-value=4.5 Score=24.05 Aligned_cols=33 Identities=15% Similarity=0.238 Sum_probs=29.1
Q ss_pred eEEEEEECCCCcccCceEEEEeCCEEEEEEeCCC
Q 033685 67 MFSRRFRLPENVKMDQIKASMESGVLTVTVPKVE 100 (113)
Q Consensus 67 ~f~r~~~lP~~vd~~~i~A~~~~GiL~I~~pk~~ 100 (113)
.|.-.+.|| ++.++.|+.+++++.|+|+--+..
T Consensus 8 ~~~v~~dlp-G~~~edI~V~v~~~~L~I~g~~~~ 40 (87)
T cd06481 8 GFSLKLDVR-GFSPEDLSVRVDGRKLVVTGKREK 40 (87)
T ss_pred eEEEEEECC-CCChHHeEEEEECCEEEEEEEEee
Confidence 477889999 899999999999999999998653
No 60
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=81.91 E-value=6.9 Score=21.89 Aligned_cols=41 Identities=17% Similarity=0.238 Sum_probs=28.9
Q ss_pred eecEE-EcCCeEEEEEEcCCCCCCCEEEEEeCCcEEEEEEEE
Q 033685 7 FINLT-ETPEAHVFKTDLPGLRKEEVKVEVEDDRVLQISGQR 47 (113)
Q Consensus 7 ~~dv~-e~~~~~~i~~~lpG~~~~~i~v~v~~~~~L~I~~~~ 47 (113)
|+.+. -..+.|.|++..+|+..-.-.|.+..+....|+...
T Consensus 26 p~~~~~l~~G~~~v~v~~~Gy~~~~~~v~v~~~~~~~v~~~L 67 (71)
T PF08308_consen 26 PLTLKDLPPGEHTVTVEKPGYEPYTKTVTVKPGETTTVNVTL 67 (71)
T ss_pred cceeeecCCccEEEEEEECCCeeEEEEEEECCCCEEEEEEEE
Confidence 33444 346788899999998888777888766666666553
No 61
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=81.35 E-value=5.3 Score=23.91 Aligned_cols=33 Identities=15% Similarity=0.325 Sum_probs=27.7
Q ss_pred eeEEEEEECCCCcccCceEEEEeCCEEEEEEeCC
Q 033685 66 GMFSRRFRLPENVKMDQIKASMESGVLTVTVPKV 99 (113)
Q Consensus 66 ~~f~r~~~lP~~vd~~~i~A~~~~GiL~I~~pk~ 99 (113)
..|.-.+.|| +++.++++.+++++.|.|+--+.
T Consensus 7 ~~~~i~~~lp-G~~~edi~I~~~~~~L~I~g~~~ 39 (102)
T PF00011_consen 7 DEYIIKVDLP-GFDKEDIKIKVDDNKLVISGKRK 39 (102)
T ss_dssp SEEEEEEE-T-TS-GGGEEEEEETTEEEEEEEEE
T ss_pred CEEEEEEECC-CCChHHEEEEEecCccceeceee
Confidence 3578899999 88999999999999999998877
No 62
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=80.35 E-value=5.5 Score=24.09 Aligned_cols=32 Identities=19% Similarity=0.236 Sum_probs=26.2
Q ss_pred CeEEEEEEcC-CCCCCCEEEEEeCCcEEEEEEE
Q 033685 15 EAHVFKTDLP-GLRKEEVKVEVEDDRVLQISGQ 46 (113)
Q Consensus 15 ~~~~i~~~lp-G~~~~~i~v~v~~~~~L~I~~~ 46 (113)
..|.=.+.|| +++.+.|+-.+..++.|+|.+.
T Consensus 58 r~F~R~~~LP~~Vd~~~v~s~l~~dGvL~IeaP 90 (91)
T cd06480 58 KNFTKKIQLPPEVDPVTVFASLSPEGLLIIEAP 90 (91)
T ss_pred EEEEEEEECCCCCCchhEEEEeCCCCeEEEEcC
Confidence 3577788899 8999999999994469999863
No 63
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=79.30 E-value=7 Score=22.29 Aligned_cols=34 Identities=32% Similarity=0.488 Sum_probs=29.9
Q ss_pred eEEEEEECCCCcccCceEEEEeCCEEEEEEeCCCC
Q 033685 67 MFSRRFRLPENVKMDQIKASMESGVLTVTVPKVEV 101 (113)
Q Consensus 67 ~f~r~~~lP~~vd~~~i~A~~~~GiL~I~~pk~~~ 101 (113)
.|.-.+.|| +++.+.++.++.++.|.|+..+...
T Consensus 8 ~~~i~~~lp-g~~~~~i~V~v~~~~l~I~g~~~~~ 41 (88)
T cd06464 8 AYVVEADLP-GFKKEDIKVEVEDGVLTISGEREEE 41 (88)
T ss_pred EEEEEEECC-CCCHHHeEEEEECCEEEEEEEEecc
Confidence 578899999 5999999999999999999887754
No 64
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=78.91 E-value=8.8 Score=22.73 Aligned_cols=33 Identities=24% Similarity=0.433 Sum_probs=27.6
Q ss_pred eEEEEEECCCCcccCceEEEEeCC-EEEEEEeCCC
Q 033685 67 MFSRRFRLPENVKMDQIKASMESG-VLTVTVPKVE 100 (113)
Q Consensus 67 ~f~r~~~lP~~vd~~~i~A~~~~G-iL~I~~pk~~ 100 (113)
.|.-.+.|| ++..+.++..+.+| .|+|+--+..
T Consensus 10 ~~~i~~~lP-Gv~~edi~i~v~~~~~L~I~g~~~~ 43 (92)
T cd06472 10 AHVFKADVP-GVKKEDVKVEVEDGRVLRISGERKK 43 (92)
T ss_pred eEEEEEECC-CCChHhEEEEEeCCCEEEEEEEecc
Confidence 577889999 78999999999865 9999987653
No 65
>PF12992 DUF3876: Domain of unknown function, B. Theta Gene description (DUF3876); InterPro: IPR024452 This bacterial family of conserved proteins has no known function.
Probab=76.64 E-value=12 Score=22.91 Aligned_cols=39 Identities=13% Similarity=0.066 Sum_probs=29.6
Q ss_pred cceecEEEcCCeEEEEEEcCCC-----CCCCEEEEEeCCcEEEEE
Q 033685 5 PNFINLTETPEAHVFKTDLPGL-----RKEEVKVEVEDDRVLQIS 44 (113)
Q Consensus 5 ~p~~dv~e~~~~~~i~~~lpG~-----~~~~i~v~v~~~~~L~I~ 44 (113)
.|.+.|+++++.|.|.+--+.- .++...|.-.++ .+.|.
T Consensus 25 ~P~v~I~r~g~~Y~vti~~~~~~~~~~~p~tY~i~~~~g-~~fI~ 68 (95)
T PF12992_consen 25 KPDVTIYRNGGSYKVTITYRSGYTGRAKPETYPIQEEDG-NLFIE 68 (95)
T ss_pred CCCEEEEECCCeEEEEEEEEcCcCCcccceEEEEEEeCC-EEEEe
Confidence 7999999999999999876643 555666776664 66666
No 66
>PF14814 UB2H: Bifunctional transglycosylase second domain; PDB: 3FWL_A 3VMA_A.
Probab=76.26 E-value=7.8 Score=22.92 Aligned_cols=43 Identities=12% Similarity=0.414 Sum_probs=26.6
Q ss_pred CCCcEEEeeeeeeeEEEEEECCCCcccCc-eEEEEeCCEEE-EEE
Q 033685 54 KNDTWHRVERSSGMFSRRFRLPENVKMDQ-IKASMESGVLT-VTV 96 (113)
Q Consensus 54 ~~~~~~~~e~~~~~f~r~~~lP~~vd~~~-i~A~~~~GiL~-I~~ 96 (113)
..+.|....-.+-=|.|.|.+|+...+.. ++-+|.+|-+. |.-
T Consensus 29 ~pG~y~~~g~~i~i~~R~F~F~Dg~e~~~~~~l~f~~~~V~~i~~ 73 (85)
T PF14814_consen 29 RPGEYSRSGNRIEIYTRGFDFPDGQEPARRVRLTFSGGRVSSIQD 73 (85)
T ss_dssp STTEEEEETTEEEEEE--EEETTCEE--EEEEEEEETTEEEEEEE
T ss_pred CCeEEEEECCEEEEEECCCCCCCCCccCEEEEEEECCCEEEEEEE
Confidence 34445555555556889999999987776 88889888443 443
No 67
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=75.08 E-value=16 Score=23.95 Aligned_cols=33 Identities=15% Similarity=0.253 Sum_probs=29.2
Q ss_pred eEEEEEECCCCcccCceEEEEeCCEEEEEEeCCC
Q 033685 67 MFSRRFRLPENVKMDQIKASMESGVLTVTVPKVE 100 (113)
Q Consensus 67 ~f~r~~~lP~~vd~~~i~A~~~~GiL~I~~pk~~ 100 (113)
.|.-...|| +++.+++...+++|.|+|+--+..
T Consensus 44 ~y~v~adlP-Gv~kedi~V~v~~~~LtI~ge~~~ 76 (142)
T PRK11597 44 HYRITLALA-GFRQEDLDIQLEGTRLTVKGTPEQ 76 (142)
T ss_pred EEEEEEEeC-CCCHHHeEEEEECCEEEEEEEEcc
Confidence 577889999 899999999999999999997653
No 68
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=74.05 E-value=5.7 Score=26.92 Aligned_cols=36 Identities=28% Similarity=0.318 Sum_probs=29.8
Q ss_pred EEEEEEcC-CCCCCCEEEEEeCCcEEEEEEEEecccc
Q 033685 17 HVFKTDLP-GLRKEEVKVEVEDDRVLQISGQRNIEKE 52 (113)
Q Consensus 17 ~~i~~~lp-G~~~~~i~v~v~~~~~L~I~~~~~~~~~ 52 (113)
|.=+..|| |++++.|.-.+..++.|+|+|.+.....
T Consensus 117 F~R~y~LP~~vdp~~V~S~LS~dGvLtI~ap~~~~~~ 153 (173)
T KOG3591|consen 117 FVRKYLLPEDVDPTSVTSTLSSDGVLTIEAPKPPPKQ 153 (173)
T ss_pred EEEEecCCCCCChhheEEeeCCCceEEEEccCCCCcC
Confidence 44567788 9999999999998889999999866543
No 69
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=72.04 E-value=13 Score=24.10 Aligned_cols=33 Identities=24% Similarity=0.389 Sum_probs=29.9
Q ss_pred eEEEEEECCCCcccCceEEEEeCCEEEEEEeCCC
Q 033685 67 MFSRRFRLPENVKMDQIKASMESGVLTVTVPKVE 100 (113)
Q Consensus 67 ~f~r~~~lP~~vd~~~i~A~~~~GiL~I~~pk~~ 100 (113)
.|.-++.|| +++.+.|+-++.++.|+|+.-+..
T Consensus 51 ~~~I~~elP-G~~kedI~I~~~~~~l~I~g~~~~ 83 (146)
T COG0071 51 EYRITAELP-GVDKEDIEITVEGNTLTIRGEREE 83 (146)
T ss_pred EEEEEEEcC-CCChHHeEEEEECCEEEEEEEecc
Confidence 577789999 899999999999999999999875
No 70
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=71.34 E-value=2.8 Score=30.85 Aligned_cols=78 Identities=22% Similarity=0.133 Sum_probs=55.1
Q ss_pred eecEEEcCCeEEEEEEcCCCCCCCEEEEEeCCcEEEEEEEEeccccCCCCcEEEeeeeeeeEEEEEECCCCcccCceEEE
Q 033685 7 FINLTETPEAHVFKTDLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKAS 86 (113)
Q Consensus 7 ~~dv~e~~~~~~i~~~lpG~~~~~i~v~v~~~~~L~I~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~A~ 86 (113)
..++.++.+...|-+--|-+..++|++.+.. |.|.|+-+.+...- -|.-...|-..|+++..+-+
T Consensus 178 ~yd~s~Ts~t~~ifiy~~pv~deqVs~~~e~-NTL~I~~q~~~~~~--------------~~~~~~~Ly~ev~P~~~s~k 242 (368)
T COG5091 178 AYDFSETSDTAIIFIYRPPVGDEQVSPVLEG-NTLSISYQPRRLRL--------------WNDITISLYKEVYPDIRSIK 242 (368)
T ss_pred eeeccccceeEEEEEecCCCCccccceeecC-Ccceeeeeccccch--------------HHHhhhhhhhhcCcchhhhh
Confidence 4567777888888888899999999999998 79999966532211 13345667777888776665
Q ss_pred EeCCEEEEEEeCC
Q 033685 87 MESGVLTVTVPKV 99 (113)
Q Consensus 87 ~~~GiL~I~~pk~ 99 (113)
.---.++|++.|.
T Consensus 243 ~fsK~~e~~l~KV 255 (368)
T COG5091 243 SFSKRVEVHLRKV 255 (368)
T ss_pred hcchhheehhhhh
Confidence 5446667766654
No 71
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=71.29 E-value=12 Score=21.45 Aligned_cols=31 Identities=26% Similarity=0.343 Sum_probs=26.6
Q ss_pred eEEEEEECCCCcccCceEEEEeCCEEEEEEe
Q 033685 67 MFSRRFRLPENVKMDQIKASMESGVLTVTVP 97 (113)
Q Consensus 67 ~f~r~~~lP~~vd~~~i~A~~~~GiL~I~~p 97 (113)
...-+|.+|..+..+++.+.+.+.-|.|.++
T Consensus 9 ~V~i~i~~~~~~~~~dv~v~~~~~~l~v~~~ 39 (85)
T cd06467 9 EVTVTIPLPEGTKSKDVKVEITPKHLKVGVK 39 (85)
T ss_pred EEEEEEECCCCCcceeEEEEEEcCEEEEEEC
Confidence 3556788999999999999999999999886
No 72
>KOG3247 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.14 E-value=2.6 Score=32.49 Aligned_cols=78 Identities=19% Similarity=0.240 Sum_probs=54.2
Q ss_pred ecceecEEEcCCeEEEEEEcCCCCCCCEEEEEeCCcEEEEEEEEeccccCCCCcEEEeeeeeeeEEEEEECCCCc-ccCc
Q 033685 4 IPNFINLTETPEAHVFKTDLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKNDTWHRVERSSGMFSRRFRLPENV-KMDQ 82 (113)
Q Consensus 4 ~~p~~dv~e~~~~~~i~~~lpG~~~~~i~v~v~~~~~L~I~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~v-d~~~ 82 (113)
..|.+.+..+++.+.|.+..|-.....+.+..-+ +....+ .+.|--...+|.-+ +-..
T Consensus 2 ltp~f~itqdee~~~L~I~~p~~~a~~le~~a~~-nm~~f~--------------------~~pyflrl~~p~~~~~d~~ 60 (466)
T KOG3247|consen 2 LTPQFAITQDEEFCTLIIPRPLNQASKLEIDAAA-NMASFS--------------------AGPYFLRLAGPGMVEDDAR 60 (466)
T ss_pred CCceeeeeecCceEEEEeeccccchhccchhhHh-hhhhhc--------------------cchhHHhhcCcchhhhhcc
Confidence 4688999999999999999996666677776665 455444 23344456667554 3333
Q ss_pred eEEEE--eCCEEEEEEeCCCCC
Q 033685 83 IKASM--ESGVLTVTVPKVEVT 102 (113)
Q Consensus 83 i~A~~--~~GiL~I~~pk~~~~ 102 (113)
-.|+| ++|-..|.+||..+.
T Consensus 61 ~n~s~d~kd~~~~vK~~K~~~~ 82 (466)
T KOG3247|consen 61 PNASYDAKDGYAHVKVPKFHPG 82 (466)
T ss_pred ccCccccccceeEEeecCCCcc
Confidence 44555 689999999997653
No 73
>KOG3260 consensus Calcyclin-binding protein CacyBP [Signal transduction mechanisms]
Probab=67.20 E-value=35 Score=23.62 Aligned_cols=77 Identities=14% Similarity=0.213 Sum_probs=53.2
Q ss_pred ecEEEcCCeEEEEEEcCCCCCCCEEEEEeCCcEEEEEEEEeccccCCCCcEEEeeeeeeeEEEEE-ECCCCcccCceEEE
Q 033685 8 INLTETPEAHVFKTDLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKNDTWHRVERSSGMFSRRF-RLPENVKMDQIKAS 86 (113)
Q Consensus 8 ~dv~e~~~~~~i~~~lpG~~~~~i~v~v~~~~~L~I~~~~~~~~~~~~~~~~~~e~~~~~f~r~~-~lP~~vd~~~i~A~ 86 (113)
+-|-++++.+.+.+.|-|++.+++++..+. +.|.+.-..- ++ .+|.-.+ .|-.++++++-+..
T Consensus 77 ygWDQs~kfVK~yItL~GV~eenVqv~ftp-~Sldl~v~dl-----qG----------K~y~~~vnnLlk~I~vEks~~k 140 (224)
T KOG3260|consen 77 YGWDQSNKFVKMYITLEGVDEENVQVEFTP-MSLDLKVHDL-----QG----------KNYRMIVNNLLKPISVEKSSKK 140 (224)
T ss_pred cCccccCCeeEEEEEeecccccceeEEecc-cceeeeeeec-----CC----------cceeeehhhhccccChhhcccc
Confidence 456677888899999999999999999998 6888774431 11 1233222 24466788887777
Q ss_pred EeCCEEEEEEeCCC
Q 033685 87 MESGVLTVTVPKVE 100 (113)
Q Consensus 87 ~~~GiL~I~~pk~~ 100 (113)
..-....|.+.|-+
T Consensus 141 vKtd~v~I~~kkVe 154 (224)
T KOG3260|consen 141 VKTDTVLILCKKVE 154 (224)
T ss_pred cccceEEEeehhhh
Confidence 77777777775543
No 74
>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.
Probab=66.24 E-value=18 Score=19.56 Aligned_cols=26 Identities=31% Similarity=0.512 Sum_probs=20.1
Q ss_pred CCCCCCCEEEEEeCCcEEEEEEEEecc
Q 033685 24 PGLRKEEVKVEVEDDRVLQISGQRNIE 50 (113)
Q Consensus 24 pG~~~~~i~v~v~~~~~L~I~~~~~~~ 50 (113)
++++..+|+|.+.++ .+.++|.-...
T Consensus 12 ~~~~~~~i~v~v~~g-~v~L~G~v~s~ 37 (64)
T PF04972_consen 12 PWLPDSNISVSVENG-VVTLSGEVPSQ 37 (64)
T ss_dssp -CTT-TTEEEEEECT-EEEEEEEESSC
T ss_pred cccCCCeEEEEEECC-EEEEEeeCcHH
Confidence 457777999999985 99999998543
No 75
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=65.56 E-value=22 Score=19.95 Aligned_cols=33 Identities=18% Similarity=0.330 Sum_probs=27.4
Q ss_pred CeEEEEEEcC-CCCCCCEEEEEeCCcEEEEEEEEe
Q 033685 15 EAHVFKTDLP-GLRKEEVKVEVEDDRVLQISGQRN 48 (113)
Q Consensus 15 ~~~~i~~~lp-G~~~~~i~v~v~~~~~L~I~~~~~ 48 (113)
+.|.+.++|| .+++++.+..+.++ .|.|+-.+.
T Consensus 36 ~~~~~~~~l~~~I~~e~~~~~~~~~-~l~i~L~K~ 69 (78)
T cd06469 36 PPYLFELDLAAPIDDEKSSAKIGNG-VLVFTLVKK 69 (78)
T ss_pred CCEEEEEeCcccccccccEEEEeCC-EEEEEEEeC
Confidence 5688899999 47999999999984 899996664
No 76
>PF01954 DUF104: Protein of unknown function DUF104; InterPro: IPR008203 This family includes short archaebacterial proteins of unknown function. Archaeoglobus fulgidus has twelve copies of this protein, with several being clustered together in the genome.; PDB: 2NWT_A.
Probab=60.10 E-value=11 Score=21.06 Aligned_cols=17 Identities=41% Similarity=0.507 Sum_probs=11.8
Q ss_pred CceEEEEeCCEEEEEEe
Q 033685 81 DQIKASMESGVLTVTVP 97 (113)
Q Consensus 81 ~~i~A~~~~GiL~I~~p 97 (113)
..|.|.|+||+|.-.=|
T Consensus 3 ~~I~aiYe~GvlkPl~~ 19 (60)
T PF01954_consen 3 KVIEAIYENGVLKPLEP 19 (60)
T ss_dssp --EEEEEETTEEEECS-
T ss_pred ceEEEEEECCEEEECCC
Confidence 35899999999875433
No 77
>PRK05518 rpl6p 50S ribosomal protein L6P; Reviewed
Probab=60.01 E-value=53 Score=22.42 Aligned_cols=46 Identities=28% Similarity=0.449 Sum_probs=31.7
Q ss_pred CCCCEEEEEeCCcEEEEEEEEeccccCCCCcEEEeeeeeeeEEEEEECCCCcccCceEEEEeCCEEEEEEe
Q 033685 27 RKEEVKVEVEDDRVLQISGQRNIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESGVLTVTVP 97 (113)
Q Consensus 27 ~~~~i~v~v~~~~~L~I~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~A~~~~GiL~I~~p 97 (113)
=+++++|.+++ +.++++|.. |...+.| |.. .+....+++.|.+...
T Consensus 12 IP~~V~v~i~~-~~v~VkGp~------------------G~L~~~~--~~~----~v~i~~~~~~i~v~~~ 57 (180)
T PRK05518 12 IPEGVTVEIEG-LVVTVKGPK------------------GELTRDF--WYP----GVTISVEDGKVVIETE 57 (180)
T ss_pred cCCCCEEEEEC-CEEEEECCC------------------eEEEEEe--cCC----cEEEEEECCEEEEEEC
Confidence 36789999998 699999764 4444444 321 4566678888888755
No 78
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=56.30 E-value=42 Score=20.13 Aligned_cols=40 Identities=15% Similarity=0.050 Sum_probs=31.7
Q ss_pred CceecceecEEEcCCeEEEEEEcCCC-CCCCEEEEEeCCcE
Q 033685 1 MWLIPNFINLTETPEAHVFKTDLPGL-RKEEVKVEVEDDRV 40 (113)
Q Consensus 1 ~~~~~p~~dv~e~~~~~~i~~~lpG~-~~~~i~v~v~~~~~ 40 (113)
++.++|+.+=...++.-.|.=-+-|+ .+.+|.|....++.
T Consensus 1 v~~~pPs~~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~ 41 (96)
T cd07696 1 VTLLPPSPKQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSG 41 (96)
T ss_pred CEecCcCHHHhccCCCeEEEEEEeCCCCCCCcEEEEEECCe
Confidence 35677877666667888888889999 99999999987533
No 79
>TIGR03654 L6_bact ribosomal protein L6, bacterial type.
Probab=54.07 E-value=66 Score=21.72 Aligned_cols=44 Identities=30% Similarity=0.562 Sum_probs=30.7
Q ss_pred CCCEEEEEeCCcEEEEEEEEeccccCCCCcEEEeeeeeeeEEEEEECCCCcccCceEEEEeCCEEEEEEe
Q 033685 28 KEEVKVEVEDDRVLQISGQRNIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESGVLTVTVP 97 (113)
Q Consensus 28 ~~~i~v~v~~~~~L~I~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~A~~~~GiL~I~~p 97 (113)
+++++|++++ +.|+|+|.. |...+.| |. .+....+++.|.+...
T Consensus 11 P~~V~v~~~~-~~v~v~Gp~------------------G~l~~~l--~~-----~i~i~~~~~~i~v~~~ 54 (175)
T TIGR03654 11 PAGVEVTIDG-NVVTVKGPK------------------GELSRTL--HP-----GVTVKVEDGQLTVSRP 54 (175)
T ss_pred CCCcEEEEeC-CEEEEEcCC------------------eEEEEEc--CC-----CeEEEEECCEEEEEec
Confidence 5788999998 699999764 4444444 53 4455678888777755
No 80
>PRK14290 chaperone protein DnaJ; Provisional
Probab=53.06 E-value=97 Score=23.35 Aligned_cols=30 Identities=10% Similarity=0.274 Sum_probs=21.6
Q ss_pred EEEECCCCcccCceEEEEeCCEEEEEEeCC
Q 033685 70 RRFRLPENVKMDQIKASMESGVLTVTVPKV 99 (113)
Q Consensus 70 r~~~lP~~vd~~~i~A~~~~GiL~I~~pk~ 99 (113)
..+.|.+.+....+....-+|.++|.+|..
T Consensus 276 ~~Isl~eAl~G~~~~I~~~~g~i~V~Ip~g 305 (365)
T PRK14290 276 QKINFPQAALGGEIEIKLFREKYNLKIPEG 305 (365)
T ss_pred EEeCHHHHhCCCEEEEEcCCceEEEEECCc
Confidence 355556667667677777788899999954
No 81
>TIGR03653 arch_L6P archaeal ribosomal protein L6P. Members of this protein family are the archaeal ribosomal protein L6P. The top-scoring proteins not selected by this model are eukaryotic cytosolic ribosomal protein L9. Bacterial ribosomal protein L6 scores lower and is described by a distinct model.
Probab=52.89 E-value=69 Score=21.61 Aligned_cols=45 Identities=24% Similarity=0.458 Sum_probs=30.9
Q ss_pred CCCEEEEEeCCcEEEEEEEEeccccCCCCcEEEeeeeeeeEEEEEECCCCcccCceEEEEeCCEEEEEEe
Q 033685 28 KEEVKVEVEDDRVLQISGQRNIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESGVLTVTVP 97 (113)
Q Consensus 28 ~~~i~v~v~~~~~L~I~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~A~~~~GiL~I~~p 97 (113)
+++++|++.+ +.++++|.. |...+.|. |. .+....+++.|.+..+
T Consensus 7 P~~V~v~i~~-~~i~vkGp~------------------G~L~~~~~-~~-----~v~i~~~~~~i~v~~~ 51 (170)
T TIGR03653 7 PEGVSVTIEG-NIVTVKGPK------------------GEVTRELW-YP-----GIEISVEDGKVVIETD 51 (170)
T ss_pred CCCCEEEEeC-CEEEEECCC------------------eEEEEEEe-CC-----cEEEEEeCCEEEEEeC
Confidence 5688999998 699999764 44444442 32 4555678888888755
No 82
>CHL00140 rpl6 ribosomal protein L6; Validated
Probab=49.78 E-value=79 Score=21.40 Aligned_cols=44 Identities=20% Similarity=0.556 Sum_probs=29.9
Q ss_pred CCCEEEEEeCCcEEEEEEEEeccccCCCCcEEEeeeeeeeEEEEEECCCCcccCceEEEEeCCEEEEEEe
Q 033685 28 KEEVKVEVEDDRVLQISGQRNIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESGVLTVTVP 97 (113)
Q Consensus 28 ~~~i~v~v~~~~~L~I~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~A~~~~GiL~I~~p 97 (113)
+++++|++++ +.|+|+|.. |.. +..||. .+....+++.|.+..+
T Consensus 12 P~~V~v~i~~-~~v~vkGp~------------------G~l--~~~~~~-----~v~i~~~~~~i~v~~~ 55 (178)
T CHL00140 12 PDNVNVSIDD-QIIKVKGPK------------------GTL--SRKIPD-----LITIEIQDNSLFVSKK 55 (178)
T ss_pred CCCCEEEEEC-CEEEEECCC------------------EEE--EEECCC-----CeEEEEeCCEEEEEcC
Confidence 5678899998 699999764 333 345664 3455678887777654
No 83
>PRK05498 rplF 50S ribosomal protein L6; Validated
Probab=49.77 E-value=79 Score=21.37 Aligned_cols=44 Identities=27% Similarity=0.513 Sum_probs=30.3
Q ss_pred CCCEEEEEeCCcEEEEEEEEeccccCCCCcEEEeeeeeeeEEEEEECCCCcccCceEEEEeCCEEEEEEe
Q 033685 28 KEEVKVEVEDDRVLQISGQRNIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESGVLTVTVP 97 (113)
Q Consensus 28 ~~~i~v~v~~~~~L~I~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~A~~~~GiL~I~~p 97 (113)
+++++|++.+ +.|+|+|.. |...+.| |. .+....+++.|.+...
T Consensus 12 P~~V~v~~~~-~~v~vkGp~------------------G~l~~~~--~~-----~v~i~~~~~~i~v~~~ 55 (178)
T PRK05498 12 PAGVEVTING-NVVTVKGPK------------------GELSRTL--NP-----DVTVKVEDNEITVTRP 55 (178)
T ss_pred CCCCEEEEEC-CEEEEECCC------------------EEEEEEc--CC-----CeEEEEECCEEEEEcC
Confidence 5788999998 699999764 4455554 43 3455568887777654
No 84
>PRK10568 periplasmic protein; Provisional
Probab=49.31 E-value=52 Score=22.66 Aligned_cols=25 Identities=16% Similarity=0.385 Sum_probs=21.2
Q ss_pred CCCCCCCEEEEEeCCcEEEEEEEEec
Q 033685 24 PGLRKEEVKVEVEDDRVLQISGQRNI 49 (113)
Q Consensus 24 pG~~~~~i~v~v~~~~~L~I~~~~~~ 49 (113)
++++..+|+|.+.+| .+.+.|.-..
T Consensus 73 ~~i~~~~I~V~v~~G-~V~L~G~V~s 97 (203)
T PRK10568 73 DNIKSTDISVKTHQK-VVTLSGFVES 97 (203)
T ss_pred CCCCCCceEEEEECC-EEEEEEEeCC
Confidence 567778999999995 9999999864
No 85
>cd00503 Frataxin Frataxin is a nuclear-encoded mitochondrial protein implicated in Friedreich's ataxia (FRDA), an human autosomal recessive neurodegenerative disease; Frataxin is found in eukaryotes and in purple bacteria; lack of frataxin causes iron to accumulate in the mitochondrial matrix suggesting that frataxin is involved in mitochondrial iron homeostasis and possibly in iron transport; the domain has an alpha-beta fold consisting of two helices flanking an antiparallel beta sheet.
Probab=48.55 E-value=23 Score=21.89 Aligned_cols=17 Identities=35% Similarity=0.515 Sum_probs=14.8
Q ss_pred CceEEEEeCCEEEEEEe
Q 033685 81 DQIKASMESGVLTVTVP 97 (113)
Q Consensus 81 ~~i~A~~~~GiL~I~~p 97 (113)
..+.+.+.+|+|+|+++
T Consensus 28 ~d~D~e~~~gVLti~f~ 44 (105)
T cd00503 28 ADIDVETQGGVLTLTFG 44 (105)
T ss_pred cCEeeeccCCEEEEEEC
Confidence 45778889999999998
No 86
>PF01491 Frataxin_Cyay: Frataxin-like domain; InterPro: IPR002908 The eukaryotic proteins in this entry include frataxin, the protein that is mutated in Friedreich's ataxia [], and related sequences. Friedreich's ataxia is a progressive neurodegenerative disorder caused by loss of function mutations in the gene encoding frataxin (FRDA). Frataxin mRNA is predominantly expressed in tissues with a high metabolic rate (including liver, kidney, brown fat and heart). Mouse and yeast frataxin homologues contain a potential N-terminal mitochondrial targeting sequence, and human frataxin has been observed to co-localise with a mitochondrial protein. Furthermore, disruption of the yeast gene has been shown to result in mitochondrial dysfunction. Friedreich's ataxia is thus believed to be a mitochondrial disease caused by a mutation in the nuclear genome (specifically, expansion of an intronic GAA triplet repeat) [, , ]. The bacterial proteins in this entry are iron-sulphur cluster (FeS) metabolism CyaY proteins hmologous to eukaryotic frataxin. Partial Phylogenetic Profiling [] suggests that CyaY most likely functions as part of the ISC system for FeS cluster biosynthesis, and is supported by expermimental data in some species [, ]. ; PDB: 1EW4_A 2P1X_A 1SOY_A 2EFF_A 3T3T_B 3S4M_A 3T3K_A 3S5D_A 1LY7_A 3T3X_B ....
Probab=48.15 E-value=29 Score=21.52 Aligned_cols=19 Identities=32% Similarity=0.504 Sum_probs=15.8
Q ss_pred CceEEEEeCCEEEEEEeCC
Q 033685 81 DQIKASMESGVLTVTVPKV 99 (113)
Q Consensus 81 ~~i~A~~~~GiL~I~~pk~ 99 (113)
..+.+.+.+|+|+|.++..
T Consensus 30 ~d~d~e~~~gVLti~~~~~ 48 (109)
T PF01491_consen 30 ADIDVERSGGVLTIEFPDG 48 (109)
T ss_dssp STEEEEEETTEEEEEETTS
T ss_pred CceEEEccCCEEEEEECCC
Confidence 3588999999999999643
No 87
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=46.59 E-value=64 Score=19.39 Aligned_cols=31 Identities=13% Similarity=0.258 Sum_probs=27.0
Q ss_pred eeEEEEEECCCCcccCceEEEEeCCEEEEEE
Q 033685 66 GMFSRRFRLPENVKMDQIKASMESGVLTVTV 96 (113)
Q Consensus 66 ~~f~r~~~lP~~vd~~~i~A~~~~GiL~I~~ 96 (113)
....-+|++|.++....+...+...-|.|.+
T Consensus 15 ~eV~v~i~lp~~~~~kdv~V~i~~~~l~V~~ 45 (93)
T cd06494 15 DEVFIEVNVPPGTRAKDVKCKLGSRDISLAV 45 (93)
T ss_pred CEEEEEEECCCCCceeeEEEEEEcCEEEEEE
Confidence 3456678899999999999999999999988
No 88
>PRK00446 cyaY frataxin-like protein; Provisional
Probab=46.57 E-value=23 Score=21.96 Aligned_cols=17 Identities=35% Similarity=0.446 Sum_probs=14.5
Q ss_pred eEEEEeCCEEEEEEeCC
Q 033685 83 IKASMESGVLTVTVPKV 99 (113)
Q Consensus 83 i~A~~~~GiL~I~~pk~ 99 (113)
+.+.+.+|+|+|+++..
T Consensus 29 ~D~e~~~gVLti~f~~~ 45 (105)
T PRK00446 29 IDCERNGGVLTLTFENG 45 (105)
T ss_pred eeeeccCCEEEEEECCC
Confidence 67888999999999853
No 89
>TIGR03421 FeS_CyaY iron donor protein CyaY. Members of this protein family are the iron-sulfur cluster (FeS) metabolism protein CyaY, a homolog of eukaryotic frataxin. ISC is one of several bacterial systems for FeS assembly; we find by Partial Phylogenetic Profiling vs. the ISC system that CyaY most like work with the ISC system for FeS cluster biosynthesis. A study of of cyaY mutants in Salmonella enterica bears this out. Although the trusted cutoff is set low enough to include eukaryotic frataxin sequences, a narrower, exception-type model (TIGR03421) identifies identifies members of that specific set.
Probab=46.48 E-value=22 Score=21.93 Aligned_cols=17 Identities=35% Similarity=0.511 Sum_probs=14.4
Q ss_pred ceEEEEeCCEEEEEEeC
Q 033685 82 QIKASMESGVLTVTVPK 98 (113)
Q Consensus 82 ~i~A~~~~GiL~I~~pk 98 (113)
.+.+.+.+|+|+|+++.
T Consensus 26 d~D~e~~~gVLti~f~~ 42 (102)
T TIGR03421 26 DIDCERAGGVLTLTFEN 42 (102)
T ss_pred CeeeecCCCEEEEEECC
Confidence 36788899999999984
No 90
>PTZ00027 60S ribosomal protein L6; Provisional
Probab=45.10 E-value=1e+02 Score=21.23 Aligned_cols=48 Identities=27% Similarity=0.350 Sum_probs=32.2
Q ss_pred CCCCEEEEEeCCcEEEEEEEEeccccCCCCcEEEeeeeeeeEEEEEECCCCcccCceEEEEeCCEEEEEEe
Q 033685 27 RKEEVKVEVEDDRVLQISGQRNIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESGVLTVTVP 97 (113)
Q Consensus 27 ~~~~i~v~v~~~~~L~I~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~A~~~~GiL~I~~p 97 (113)
=+++++|++.+ +.++|+|.. |...+.| |..- ..+....++|.|.|.-+
T Consensus 12 IP~~V~V~i~~-~~v~VkGp~------------------G~L~~~~--~~~~--~~i~i~~~~~~i~v~~~ 59 (190)
T PTZ00027 12 IPEGVTVTVKS-RKVTVTGKY------------------GELTRSF--RHLP--VDIKLSKDGKYIKVEMW 59 (190)
T ss_pred cCCCCEEEEEC-CEEEEECCC------------------ceEEEEe--cCCC--ceEEEEeCCCEEEEEeC
Confidence 36899999998 699999764 4444444 3211 24666678888777755
No 91
>PF13014 KH_3: KH domain
Probab=44.90 E-value=35 Score=17.01 Aligned_cols=21 Identities=14% Similarity=0.445 Sum_probs=12.6
Q ss_pred EEEEeCCCCCCCCeEEEEcCC
Q 033685 93 TVTVPKVEVTKPDVKAIEISG 113 (113)
Q Consensus 93 ~I~~pk~~~~~~~~~~I~I~~ 113 (113)
.|.+|+........+.|.|.|
T Consensus 23 ~I~i~~~~~~~~~~~~v~I~G 43 (43)
T PF13014_consen 23 KIQIPPENEPGSNERVVTITG 43 (43)
T ss_pred EEEECCccCCCCCceEEEEEC
Confidence 567776444444557777765
No 92
>PF07076 DUF1344: Protein of unknown function (DUF1344); InterPro: IPR009780 This family consists of several short, hypothetical bacterial proteins of around 80 residues in length. Members of this family are found in Rhizobium, Agrobacterium and Brucella species. The function of this family is unknown.
Probab=43.57 E-value=29 Score=19.48 Aligned_cols=15 Identities=33% Similarity=0.851 Sum_probs=10.5
Q ss_pred EEEECCCCcccCceE
Q 033685 70 RRFRLPENVKMDQIK 84 (113)
Q Consensus 70 r~~~lP~~vd~~~i~ 84 (113)
++|.||..++.+.++
T Consensus 25 ksy~lp~ef~~~~L~ 39 (61)
T PF07076_consen 25 KSYKLPEEFDFDGLK 39 (61)
T ss_pred CEEECCCcccccccC
Confidence 477788887766554
No 93
>cd02175 GH16_lichenase lichenase, member of glycosyl hydrolase family 16. Lichenase, also known as 1,3-1,4-beta-glucanase, is a member of glycosyl hydrolase family 16, that specifically cleaves 1,4-beta-D-glucosidic bonds in mixed-linked beta glucans that also contain 1,3-beta-D-glucosidic linkages. Natural substrates of beta-glucanase are beta-glucans from grain endosperm cell walls or lichenan from the Islandic moss, Cetraria islandica. This protein is found not only in bacteria but also in anaerobic fungi. This domain includes two seven-stranded antiparallel beta-sheets that are adjacent to one another forming a compact, jellyroll beta-sandwich structure.
Probab=42.83 E-value=1e+02 Score=21.07 Aligned_cols=47 Identities=11% Similarity=0.121 Sum_probs=27.7
Q ss_pred CCCEEEEEeCCcEEEEEEEEeccc--cCCCCcEEE-eeeeeeeEEEEEECCCC
Q 033685 28 KEEVKVEVEDDRVLQISGQRNIEK--EDKNDTWHR-VERSSGMFSRRFRLPEN 77 (113)
Q Consensus 28 ~~~i~v~v~~~~~L~I~~~~~~~~--~~~~~~~~~-~e~~~~~f~r~~~lP~~ 77 (113)
+++++|+ +| .|.|++.+.... .-..+.+.. ....+|.|+-++++|..
T Consensus 31 ~~nv~v~--~g-~L~l~~~~~~~~~~~~tsg~i~S~~~f~yG~~ear~k~~~~ 80 (212)
T cd02175 31 ADNVEFS--DG-GLALTLTNDTYGEKPYACGEYRTRGFYGYGRYEVRMKPAKG 80 (212)
T ss_pred cccEEEE--CC-eEEEEEeCCcCCCCccccceEEECceEEeeEEEEEEEcCCC
Confidence 4565554 64 899998765421 111222222 22467889999999853
No 94
>PF03983 SHD1: SLA1 homology domain 1, SHD1 ; InterPro: IPR007131 The SLA1 homology domain is found in the cytoskeleton assembly control protein SLA1, which is responsible for the correct formation of the actin cytoskeleton.; GO: 0008092 cytoskeletal protein binding, 0030674 protein binding, bridging, 0042802 identical protein binding, 0043130 ubiquitin binding; PDB: 2HBP_A.
Probab=41.52 E-value=29 Score=20.00 Aligned_cols=30 Identities=10% Similarity=0.257 Sum_probs=23.1
Q ss_pred cEEEcCCeEEEEEEcCCCCCCCEEEEEeCC
Q 033685 9 NLTETPEAHVFKTDLPGLRKEEVKVEVEDD 38 (113)
Q Consensus 9 dv~e~~~~~~i~~~lpG~~~~~i~v~v~~~ 38 (113)
.|.+..+.|.+.+.+-|+....|.+.-.+|
T Consensus 14 tWtD~tG~f~VeA~fv~~~dgkV~L~k~nG 43 (70)
T PF03983_consen 14 TWTDRTGKFKVEAEFVGVNDGKVHLHKTNG 43 (70)
T ss_dssp EEEBSSS--EEEEEEEEEETTEEEEE-TTS
T ss_pred EEEeCCCCEEEEEEEEEeeCCEEEEEecCC
Confidence 466778899999999999988999888876
No 95
>PRK11198 LysM domain/BON superfamily protein; Provisional
Probab=40.40 E-value=44 Score=21.78 Aligned_cols=26 Identities=35% Similarity=0.547 Sum_probs=21.6
Q ss_pred CCCCCCCEEEEEeCCcEEEEEEEEecc
Q 033685 24 PGLRKEEVKVEVEDDRVLQISGQRNIE 50 (113)
Q Consensus 24 pG~~~~~i~v~v~~~~~L~I~~~~~~~ 50 (113)
.|+...+++|.+.+| .++++|.....
T Consensus 38 ~~~~~~~i~V~v~~G-~v~l~G~v~s~ 63 (147)
T PRK11198 38 QGLGDADVNVQVEDG-KATVSGDAASQ 63 (147)
T ss_pred cCCCcCCceEEEeCC-EEEEEEEeCCH
Confidence 477788899999985 99999997653
No 96
>KOG3413 consensus Mitochondrial matrix protein frataxin, involved in Fe/S protein biosynthesis [Inorganic ion transport and metabolism]
Probab=39.81 E-value=15 Score=24.38 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=16.6
Q ss_pred CcccCceEEEEeCCEEEEEEeC
Q 033685 77 NVKMDQIKASMESGVLTVTVPK 98 (113)
Q Consensus 77 ~vd~~~i~A~~~~GiL~I~~pk 98 (113)
.+..+.--+.|.||+|+|.++-
T Consensus 68 ~~~~~~~Dv~y~~GVLTl~lg~ 89 (156)
T KOG3413|consen 68 EVPGEGFDVDYADGVLTLKLGS 89 (156)
T ss_pred hcCccccccccccceEEEEecC
Confidence 3444556677999999999983
No 97
>TIGR03422 mito_frataxin frataxin. Frataxin is a mitochondrial protein, mutation of which leads to the disease Friedreich's ataxia. Its orthologs are widely distributed in the bacteria, associated with the ISC system for iron-sulfur cluster assembly, and designated CyaY. This exception-type model allows those examples of frataxin per se that score above the trusted cutoff to the CyaY equivalog-type model (TIGR03421) to be named appropriately.
Probab=38.84 E-value=23 Score=21.64 Aligned_cols=16 Identities=44% Similarity=0.711 Sum_probs=13.0
Q ss_pred EEEEeCCEEEEEEeCC
Q 033685 84 KASMESGVLTVTVPKV 99 (113)
Q Consensus 84 ~A~~~~GiL~I~~pk~ 99 (113)
.+.+.+|+|+|.++..
T Consensus 30 D~e~~~gVLti~~~~~ 45 (97)
T TIGR03422 30 DVEYSSGVLTLELPSV 45 (97)
T ss_pred ccccCCCEEEEEECCC
Confidence 6678999999999743
No 98
>cd02178 GH16_beta_agarase Beta-agarase, member of glycosyl hydrolase family 16. Beta-agarase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of agarose, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Agarose is a linear chain of galactose units linked by alternating L-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Agarose forms thermo-reversible gels that are widely used in the food industry or as a laboratory medium. While beta-agarases are also found in two other families derived from the sequence-based classification of glycosyl hydrolases (GH50, and GH86) the GH16 members are most abundant. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to as a jellyroll fold.
Probab=38.26 E-value=1.4e+02 Score=21.08 Aligned_cols=44 Identities=25% Similarity=0.278 Sum_probs=27.0
Q ss_pred EEEeCCcEEEEEEEEecccc-CCCCcEE------EeeeeeeeEEEEEECCCC
Q 033685 33 VEVEDDRVLQISGQRNIEKE-DKNDTWH------RVERSSGMFSRRFRLPEN 77 (113)
Q Consensus 33 v~v~~~~~L~I~~~~~~~~~-~~~~~~~------~~e~~~~~f~r~~~lP~~ 77 (113)
+.+.+| .|.|++.+..... .....+. .....+|.|+-+++||..
T Consensus 60 v~v~~G-~L~i~a~~~~~~~~~~~~~~tsg~i~t~~~~~YG~~EaR~K~p~~ 110 (258)
T cd02178 60 VSVEDG-NLVLSATRHPGTELGNGYKVTTGSITSKEKVKYGYFEARAKASNL 110 (258)
T ss_pred eEEECC-EEEEEEEcCCCCcCCCCccEEEEEEEeCCceEEEEEEEEEEcCCC
Confidence 566775 8999998765321 1111122 122366899999999953
No 99
>PF06045 Rhamnogal_lyase: Rhamnogalacturonate lyase family; InterPro: IPR010325 Rhamnogalacturonate lyase degrades the rhamnogalacturonan I (RG-I) backbone of pectin []. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi.
Probab=36.05 E-value=87 Score=21.91 Aligned_cols=21 Identities=19% Similarity=0.341 Sum_probs=16.8
Q ss_pred CceEEEEeCCEEEEEEeCCCC
Q 033685 81 DQIKASMESGVLTVTVPKVEV 101 (113)
Q Consensus 81 ~~i~A~~~~GiL~I~~pk~~~ 101 (113)
+.-++.++||++.|+|-|...
T Consensus 14 ~~~~VvldNGiVqVtls~p~G 34 (203)
T PF06045_consen 14 QGRQVVLDNGIVQVTLSKPGG 34 (203)
T ss_pred cCCEEEEECCEEEEEEcCCCc
Confidence 445688999999999998744
No 100
>PF00347 Ribosomal_L6: Ribosomal protein L6; InterPro: IPR020040 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. L6 is a protein from the large (50S) subunit. In Escherichia coli, it is located in the aminoacyl-tRNA binding site of the peptidyltransferase centre, and is known to bind directly to 23S rRNA. It belongs to a family of ribosomal proteins, including L6 from bacteria, cyanelles (structures that perform similar functions to chloroplasts, but have structural and biochemical characteristics of Cyanobacteria) and mitochondria; and L9 from mammals, Drosophila, plants and yeast. L6 contains two domains with almost identical folds, suggesting that is was derived by the duplication of an ancient RNA-binding protein gene. Analysis reveals several sites on the protein surface where interactions with other ribosome components may occur, the N terminus being involved in protein-protein interactions and the C terminus containing possible RNA-binding sites []. This entry represents the alpha-beta domain found duplicated in ribosomal L6 proteins. This domain consists of two beta-sheets and one alpha-helix packed around single core [].; GO: 0003735 structural constituent of ribosome, 0019843 rRNA binding, 0006412 translation, 0005840 ribosome; PDB: 2HGJ_H 2HGQ_H 2HGU_H 1S1I_H 3O5H_I 3O58_I 3J16_F 3IZS_F 2V47_H 2WDJ_H ....
Probab=35.95 E-value=82 Score=17.59 Aligned_cols=44 Identities=25% Similarity=0.426 Sum_probs=28.7
Q ss_pred CCCEEEEEeCCcEEEEEEEEeccccCCCCcEEEeeeeeeeEEEEEECCCCcccCceEEE--EeCCEEEEEEe
Q 033685 28 KEEVKVEVEDDRVLQISGQRNIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKAS--MESGVLTVTVP 97 (113)
Q Consensus 28 ~~~i~v~v~~~~~L~I~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~A~--~~~GiL~I~~p 97 (113)
++.++|.+.+ +.+.+.|.. -..++.||.. ++.. .+++.+.+...
T Consensus 2 P~gV~v~~~~-~~i~v~G~~--------------------g~l~~~~~~~-----v~v~~~~~~~~~~~~~~ 47 (77)
T PF00347_consen 2 PEGVKVTIKG-NIITVKGPK--------------------GELSRPIPPG-----VKVEIKVEDNKITVSVL 47 (77)
T ss_dssp STTCEEEEET-TEEEEESSS--------------------SEEEEEETTT-----EEEEEEEETTSEEEEEE
T ss_pred CCcEEEEEeC-cEEEEECCC--------------------EeEEEECCCC-----eeEEEEcCCCceEEEEC
Confidence 4678899998 688888653 2256777744 4444 55776666554
No 101
>TIGR00251 conserved hypothetical protein TIGR00251.
Probab=35.46 E-value=1e+02 Score=18.47 Aligned_cols=40 Identities=8% Similarity=0.129 Sum_probs=27.9
Q ss_pred EEEcCCeEEEEEEc-CCCCCCCEEEEEeCC-cEEEEEEEEecc
Q 033685 10 LTETPEAHVFKTDL-PGLRKEEVKVEVEDD-RVLQISGQRNIE 50 (113)
Q Consensus 10 v~e~~~~~~i~~~l-pG~~~~~i~v~v~~~-~~L~I~~~~~~~ 50 (113)
+.++++++.|.+.+ |+.+++.|.= +.++ ..|.|+-...+.
T Consensus 1 ~~~~~~g~~l~v~V~P~A~~~~i~g-~~~~~~~Lki~v~ApP~ 42 (87)
T TIGR00251 1 VRENDDGLLIRIYVQPKASKDSIVG-YNEWRKRVEVKIKAPPV 42 (87)
T ss_pred CeEeCCeEEEEEEEeeCCCcceecc-ccCCCCeEEEEEecCCC
Confidence 35678889999988 8988888743 4441 378887665443
No 102
>PTZ00179 60S ribosomal protein L9; Provisional
Probab=34.90 E-value=1.5e+02 Score=20.34 Aligned_cols=47 Identities=23% Similarity=0.367 Sum_probs=30.7
Q ss_pred CCCEEEEEeCCcEEEEEEEEeccccCCCCcEEEeeeeeeeEEEEEECCCCcccCceEEEEeCCEEEEEEe
Q 033685 28 KEEVKVEVEDDRVLQISGQRNIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESGVLTVTVP 97 (113)
Q Consensus 28 ~~~i~v~v~~~~~L~I~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~A~~~~GiL~I~~p 97 (113)
+++++|++++ +.|+|+|.. |... ..||..- -.+....+++.|.+.-+
T Consensus 12 P~~V~V~i~~-~~ItVkGpk------------------G~Ls--~~~~~~~--~~i~i~~~~~~I~v~~~ 58 (189)
T PTZ00179 12 PEDVTVSVKD-RIVTVKGKR------------------GTLT--KDLRHLQ--LDFRVNKKNRTFTAVRW 58 (189)
T ss_pred CCCCEEEEeC-CEEEEECCC------------------cEEE--EEcCCCC--cEEEEEecCCEEEEEeC
Confidence 6789999998 699999764 3333 3445320 13555677888877744
No 103
>PF09985 DUF2223: Domain of unknown function (DUF2223); InterPro: IPR019248 This entry represents various prokaryotic membrane-anchored proteins predicted to be involved in the regulation of amylopullulanase. ; PDB: 1UG9_A 1ULV_A.
Probab=34.35 E-value=1.7e+02 Score=20.72 Aligned_cols=91 Identities=13% Similarity=0.202 Sum_probs=46.7
Q ss_pred eecEEEcCCeEEEEEEcC----------CCCCCCEEEEEeCCcEEEEEEEEe-ccccCCCCcEEEeeeeeeeE---EEEE
Q 033685 7 FINLTETPEAHVFKTDLP----------GLRKEEVKVEVEDDRVLQISGQRN-IEKEDKNDTWHRVERSSGMF---SRRF 72 (113)
Q Consensus 7 ~~dv~e~~~~~~i~~~lp----------G~~~~~i~v~v~~~~~L~I~~~~~-~~~~~~~~~~~~~e~~~~~f---~r~~ 72 (113)
.+.|++.++.|.+++.+. ||+..-|.|.++....-.-+.... ....- +..|...=+ ...| ...+
T Consensus 35 ~f~v~~~g~~~~f~~~~~~l~NpW~~P~GFS~q~i~IYid~~~gg~~~~~~pG~n~~~-~~~Wd~ai~-i~Gw~~~~~~~ 112 (228)
T PF09985_consen 35 SFKVYEDGDNLVFRFTFADLTNPWNGPNGFSLQIIQIYIDTPDGGGTSTLKPGLNVEF-GHPWDYAIR-ISGWGSYGNAI 112 (228)
T ss_dssp EEEEEEETTEEEEEEEESS---TT---SS-SSEEEEEEEE-S-SS-EE-S-GGG-EEE-SS-ECEEEE-EEST--T--EE
T ss_pred EEEEEEcCCEEEEEEEECCCCCCcccccCccceEEEEEEecCCCCcccccCCcccCCC-CCCccEEEE-EEeeecccceE
Confidence 467899999999999983 677888888888641111110000 00000 222222111 1123 4566
Q ss_pred ECCCCcc-cCc--eEEEEeCCEEEEEEeCC
Q 033685 73 RLPENVK-MDQ--IKASMESGVLTVTVPKV 99 (113)
Q Consensus 73 ~lP~~vd-~~~--i~A~~~~GiL~I~~pk~ 99 (113)
..|+.-. ... +.+.-.++.+++.+||.
T Consensus 113 ~~~~G~~~~~~~~v~~~~~~~~I~~~vpk~ 142 (228)
T PF09985_consen 113 YDADGTAISGAPQVSVDPSGNTIIVEVPKK 142 (228)
T ss_dssp E-TTS-E-EE--EEEEECCCTEEEEEEEGG
T ss_pred EccCCccCCCcceEEeccCCCEEEEEcCHH
Confidence 7776655 223 44444688999999998
No 104
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=34.28 E-value=98 Score=18.01 Aligned_cols=66 Identities=9% Similarity=0.161 Sum_probs=38.8
Q ss_pred CCeEEEEEEcCCCCCCCEEEEEeCCcEEEEEEEEe-ccccCCCCcEEEeeeeeeeEEE--EEECCCCcccCceEEEEeCC
Q 033685 14 PEAHVFKTDLPGLRKEEVKVEVEDDRVLQISGQRN-IEKEDKNDTWHRVERSSGMFSR--RFRLPENVKMDQIKASMESG 90 (113)
Q Consensus 14 ~~~~~i~~~lpG~~~~~i~v~v~~~~~L~I~~~~~-~~~~~~~~~~~~~e~~~~~f~r--~~~lP~~vd~~~i~A~~~~G 90 (113)
++...|.=.+-|+-+.+|+|....++.....+... ....+. .|.|.. .+.++.. +.+..+|...+.
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~----------d~ty~~~s~l~v~~~-~~~~ytC~V~H~ 82 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNG----------DGTYQLWVTLEVPPE-DKARYSCRVEHS 82 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECC----------CCeEEEEEEEEECCC-CCCEEEEEEEeC
Confidence 45788888999999999999888754322222211 111111 233443 5666554 666677777654
No 105
>smart00813 Alpha-L-AF_C Alpha-L-arabinofuranosidase C-terminus. This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase. This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides.
Probab=32.46 E-value=1.4e+02 Score=20.00 Aligned_cols=29 Identities=38% Similarity=0.485 Sum_probs=19.0
Q ss_pred EEECCCCcccCceE-EEEeCCEEEEEEeCC
Q 033685 71 RFRLPENVKMDQIK-ASMESGVLTVTVPKV 99 (113)
Q Consensus 71 ~~~lP~~vd~~~i~-A~~~~GiL~I~~pk~ 99 (113)
++.=|+.|.+.... +...+|.|+++||+.
T Consensus 159 t~~~p~~V~p~~~~~~~~~~~~~~~~lp~~ 188 (189)
T smart00813 159 TFEDPNKVVPVTSTLAAVEGGTLTVTLPPH 188 (189)
T ss_pred CCCCCCeeeccccCCceeeCCEEEEEeCCC
Confidence 34556666665543 345778999999974
No 106
>cd02182 GH16_Strep_laminarinase_like Streptomyces laminarinase-like, member of glycosyl hydrolase family 16. Proteins similar to Streptomyces sioyaensis beta-1,3-glucanase (laminarinase) present in Actinomycetales as well as Peziomycotina. Laminarinases belong to glycosyl hydrolase family 16 and hydrolyze the glycosidic bond of the 1,3-beta-linked glucan, a major component of fungal and plant cell walls and the structural and storage polysaccharides (laminarin) of marine macro-algae. Members of the GH16 family have a conserved jelly roll fold with an active site channel.
Probab=32.42 E-value=1.2e+02 Score=21.45 Aligned_cols=43 Identities=16% Similarity=0.163 Sum_probs=22.2
Q ss_pred EEEe-CCcEEEEEEEEeccccCCCCcEEEeee---e----eeeEEEEEECCC
Q 033685 33 VEVE-DDRVLQISGQRNIEKEDKNDTWHRVER---S----SGMFSRRFRLPE 76 (113)
Q Consensus 33 v~v~-~~~~L~I~~~~~~~~~~~~~~~~~~e~---~----~~~f~r~~~lP~ 76 (113)
+.+. +| .|+|++.+.....-..+.+..... . .++|+-+++||.
T Consensus 48 ~~v~~dG-~L~I~a~~~~~~~ytSg~i~s~~~~~~~~~gg~~~~EaRik~p~ 98 (259)
T cd02182 48 VQLSGNG-TLQITPLRDGSGKWTSGRIETTRTDFAAPPGGKLRVEASIRLGD 98 (259)
T ss_pred EEEcCCC-eEEEEEEecCCCCEEEEEEEECCccccccCCCcEEEEEEEECCC
Confidence 3455 64 899999875321111112222111 1 126788888885
No 107
>cd08023 GH16_laminarinase_like Laminarinase, member of the glycosyl hydrolase family 16. Laminarinase, also known as glucan endo-1,3-beta-D-glucosidase, is a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=32.40 E-value=1.7e+02 Score=20.15 Aligned_cols=50 Identities=24% Similarity=0.334 Sum_probs=29.3
Q ss_pred CCCCCCEEEEEeCCcEEEEEEEEeccccCC-----CCcEEE---eeeeeeeEEEEEECCCC
Q 033685 25 GLRKEEVKVEVEDDRVLQISGQRNIEKEDK-----NDTWHR---VERSSGMFSRRFRLPEN 77 (113)
Q Consensus 25 G~~~~~i~v~v~~~~~L~I~~~~~~~~~~~-----~~~~~~---~e~~~~~f~r~~~lP~~ 77 (113)
...++++. +.+| .|.|++......... .+.+.. ....+|.|+-++++|..
T Consensus 34 ~~~~~nv~--v~~G-~L~i~~~~~~~~~~~~~~~~sg~i~S~~~~~~~yG~~E~r~k~~~~ 91 (235)
T cd08023 34 TYRPENAY--VEDG-NLVITARKEPDKGGDGYPYTSGRITTKGKFSFTYGRVEARAKLPKG 91 (235)
T ss_pred eCCCCCeE--EECC-EEEEEEEECCCCCCCcccEEEEEEEECCCcceeCCEEEEEEEccCC
Confidence 34556655 4574 999999876532111 112222 22356788889998854
No 108
>PRK14299 chaperone protein DnaJ; Provisional
Probab=32.34 E-value=2e+02 Score=20.93 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=16.5
Q ss_pred CCCcccCceEEEEeCCEEEEEEeCC
Q 033685 75 PENVKMDQIKASMESGVLTVTVPKV 99 (113)
Q Consensus 75 P~~vd~~~i~A~~~~GiL~I~~pk~ 99 (113)
.+.+-...+....-||.++|.+|..
T Consensus 212 ~eAl~G~~~~v~tldG~~~v~ip~~ 236 (291)
T PRK14299 212 PIAVVGGKVRVMTLDGPVEVTIPPR 236 (291)
T ss_pred HHHhCCCEEEEECCCCCEEEEeCCC
Confidence 3445555566666678888888854
No 109
>PF13141 DUF3979: Protein of unknown function (DUF3979)
Probab=31.84 E-value=1.3e+02 Score=18.49 Aligned_cols=54 Identities=11% Similarity=0.181 Sum_probs=33.2
Q ss_pred CCCCcEEEeeeeeeeEEEEEECCCCcccCceEEEE---eCCEEEEEEeCCCCCCCCeEEEEc
Q 033685 53 DKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASM---ESGVLTVTVPKVEVTKPDVKAIEI 111 (113)
Q Consensus 53 ~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~A~~---~~GiL~I~~pk~~~~~~~~~~I~I 111 (113)
..++.|..+|.. ..+.+-+.+-.+.+++++ +-+-+.|++=|....-+.-++|.|
T Consensus 13 k~gwkyiiqe~n-----~~y~iv~~~~~~~msvelyfneyde~ritlyk~g~pittmqriai 69 (114)
T PF13141_consen 13 KGGWKYIIQEQN-----GKYSIVNEILKEHMSVELYFNEYDEVRITLYKDGNPITTMQRIAI 69 (114)
T ss_pred CCCcEEEEEEcC-----CcEEehHHHhhhceeeEEEecccceEEEEEEeCCCchhheeeeee
Confidence 456677777633 244566666667777775 566888888876544444455544
No 110
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=31.70 E-value=1.8e+02 Score=20.28 Aligned_cols=69 Identities=13% Similarity=0.186 Sum_probs=48.2
Q ss_pred CCCCCEEEEEeCCcEEEEEEEEeccccCCCCcEEEeeeeeeeEEEEEECCCCcccCceEEEEeCCEEEEEEe
Q 033685 26 LRKEEVKVEVEDDRVLQISGQRNIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESGVLTVTVP 97 (113)
Q Consensus 26 ~~~~~i~v~v~~~~~L~I~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~A~~~~GiL~I~~p 97 (113)
+.|. --+++++.+.++|.| .....-.++++++......|.-..-+...+. ..+-++|++..+.|.+.+-
T Consensus 112 ~sPK-~i~WiDD~~L~vIIG-~a~GTvS~GGnLy~~nl~tg~~~~ly~~~dk-kqQVis~e~~gd~L~Lki~ 180 (200)
T PF15525_consen 112 YSPK-YIEWIDDNNLAVIIG-YAHGTVSKGGNLYKYNLNTGNLTELYEWKDK-KQQVISAEKNGDNLNLKIN 180 (200)
T ss_pred cCCc-eeEEecCCcEEEEEc-cccceEccCCeEEEEEccCCceeEeeecccc-ceeEEEEEEeCCEEEEEEE
Confidence 4455 446777654455544 4455556888899888888888877777654 5566999999998877764
No 111
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=30.89 E-value=87 Score=17.42 Aligned_cols=28 Identities=14% Similarity=0.290 Sum_probs=17.8
Q ss_pred CeEEEEEEcCCCCCCCE-EEEEeCCcEEE
Q 033685 15 EAHVFKTDLPGLRKEEV-KVEVEDDRVLQ 42 (113)
Q Consensus 15 ~~~~i~~~lpG~~~~~i-~v~v~~~~~L~ 42 (113)
+.|.|.+..+|+..... .|.+..+....
T Consensus 48 g~Y~l~v~~~g~~~~~~~~v~v~~~~~~~ 76 (82)
T PF13620_consen 48 GTYTLRVSAPGYQPQTQENVTVTAGQTTT 76 (82)
T ss_dssp EEEEEEEEBTTEE-EEEEEEEESSSSEEE
T ss_pred EeEEEEEEECCcceEEEEEEEEeCCCEEE
Confidence 56788888888777766 46666543333
No 112
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=30.23 E-value=1.1e+02 Score=18.33 Aligned_cols=37 Identities=11% Similarity=-0.000 Sum_probs=27.0
Q ss_pred ceecceecEEEcCCeEEEEEEcCCCCCCCEEEEEeCC
Q 033685 2 WLIPNFINLTETPEAHVFKTDLPGLRKEEVKVEVEDD 38 (113)
Q Consensus 2 ~~~~p~~dv~e~~~~~~i~~~lpG~~~~~i~v~v~~~ 38 (113)
+.++|+..-...++...|.-.+-|+.+.+|+|....+
T Consensus 5 ~v~~p~~~~~~~~~~~~L~C~~~gfyP~~i~v~W~~~ 41 (100)
T cd07699 5 TIFPPSSEELEKSGKATLVCLINDFYPGFATVQWKVD 41 (100)
T ss_pred EEECCCHHHHccCCCcEEEEEEEeEECCCCEEEEEEC
Confidence 3455555444445678888899999999999998753
No 113
>PF00722 Glyco_hydro_16: Glycosyl hydrolases family 16; InterPro: IPR000757 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 16 GH16 from CAZY comprises enzymes with a number of known activities; lichenase (3.2.1.73 from EC); xyloglucan xyloglucosyltransferase (2.4.1.207 from EC); agarase (3.2.1.81 from EC); kappa-carrageenase (3.2.1.83 from EC); endo-beta-1,3-glucanase (3.2.1.39 from EC); endo-beta-1,3-1,4-glucanase (3.2.1.6 from EC); endo-beta-galactosidase (3.2.1.103 from EC).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DGT_A 2CL2_A 2WLQ_A 2WNE_A 2W39_A 2W52_A 3ILN_A 4DFS_A 1UMZ_A 1UN1_B ....
Probab=30.20 E-value=1.6e+02 Score=19.22 Aligned_cols=45 Identities=22% Similarity=0.321 Sum_probs=24.2
Q ss_pred EEEeCCcEEEEEEEEeccccCCCCcEE-EeeeeeeeEEEEEECCCC
Q 033685 33 VEVEDDRVLQISGQRNIEKEDKNDTWH-RVERSSGMFSRRFRLPEN 77 (113)
Q Consensus 33 v~v~~~~~L~I~~~~~~~~~~~~~~~~-~~e~~~~~f~r~~~lP~~ 77 (113)
|.+.+|+.|.+++..........+.+. .....+|+|+-.+++|..
T Consensus 14 v~~~~g~~L~L~~~~~~~~~~~sg~i~s~~~~~yG~~ear~k~~~~ 59 (185)
T PF00722_consen 14 VTVEDGGNLVLRADKEPGKPYTSGEIQSKFSFKYGRFEARIKAPPG 59 (185)
T ss_dssp EEEETTSEEEEEEEEEETEEEEEEEEEESSEBSSEEEEEEEECSCS
T ss_pred EEEcCCCEEEEEEEecccCceEeCEEEEcceeECcEEEEEEEecCC
Confidence 445553478888777542221122222 222457888888887643
No 114
>PF11741 AMIN: AMIN domain; InterPro: IPR021731 This N-terminal domain of various bacterial protein families is crucial for the targetting of periplasmic or extracellular proteins to specific regions of the bacterial envelope. AMIN is derived from the N-terminal domain of AmiC, an N-acetylmuramoyl-l-alanine amidase of Escherichia coli which localises to the septal ring during division and plays a key role in the separation of daughter cells. The AMIN domain is present in several protein families besides amidases suggesting that AMIN may represent a general targetting determinant involved in the localisation of periplasmic protein complexes []. ; GO: 0008745 N-acetylmuramoyl-L-alanine amidase activity
Probab=29.83 E-value=1.2e+02 Score=17.45 Aligned_cols=16 Identities=13% Similarity=0.113 Sum_probs=10.3
Q ss_pred cEEEcCCeEEEEEEcC
Q 033685 9 NLTETPEAHVFKTDLP 24 (113)
Q Consensus 9 dv~e~~~~~~i~~~lp 24 (113)
++.+++++..|.++++
T Consensus 2 ~v~~~~~~~~v~i~~~ 17 (95)
T PF11741_consen 2 RVNPTDDGTRVVIDTD 17 (95)
T ss_pred EEeeCCCcEEEEEEeC
Confidence 4566666666666666
No 115
>PF12866 DUF3823: Protein of unknown function (DUF3823); InterPro: IPR024278 This is a family of uncharacterised proteins from Bacteroidetes. These proteins have characteristic DN and DR sequence-motifs but their function is not known.; PDB: 3HN5_B 4EIU_A.
Probab=29.81 E-value=1.6e+02 Score=20.73 Aligned_cols=28 Identities=4% Similarity=0.077 Sum_probs=12.5
Q ss_pred EEEEE-EcCC---CCCCCEEEEEeCCcEEEEE
Q 033685 17 HVFKT-DLPG---LRKEEVKVEVEDDRVLQIS 44 (113)
Q Consensus 17 ~~i~~-~lpG---~~~~~i~v~v~~~~~L~I~ 44 (113)
|.+.+ +=|| ...+.+.|.+.+...+.+.
T Consensus 79 Yki~~~~G~fp~~~~~dti~v~i~G~t~~d~e 110 (222)
T PF12866_consen 79 YKIVPKNGNFPWVVPVDTIEVDIKGNTTQDFE 110 (222)
T ss_dssp EEEEE-CTSCSBSCCE--EEEEESSCEEEEEE
T ss_pred eEEEEcCCCCcccCCCccEEEEecCceEEeEE
Confidence 44444 4455 5555666666543333333
No 116
>PF14545 DBB: Dof, BCAP, and BANK (DBB) motif,
Probab=28.91 E-value=1.7e+02 Score=19.22 Aligned_cols=29 Identities=21% Similarity=0.162 Sum_probs=22.6
Q ss_pred cCCeEEEEEEcCCC---CCCCEEEEEeCCcEE
Q 033685 13 TPEAHVFKTDLPGL---RKEEVKVEVEDDRVL 41 (113)
Q Consensus 13 ~~~~~~i~~~lpG~---~~~~i~v~v~~~~~L 41 (113)
-.+.|++.+.+|.+ ....++|.+..|+.+
T Consensus 47 ~~N~yt~~~~aPd~~~~pag~V~v~v~~~g~~ 78 (142)
T PF14545_consen 47 WENPYTLQFKAPDFCLEPAGSVNVRVYCDGVS 78 (142)
T ss_pred EECCEEEEEECchhcCCCCceEEEEEEECCEE
Confidence 34678999999988 888899988875333
No 117
>PF08845 SymE_toxin: Toxin SymE, type I toxin-antitoxin system; InterPro: IPR014944 This entry represents a SOS-induced gene whose product shows homology to the antitoxin MazE (SymE), the coding region contains a cis-encoded antisense RNA. The small antisense RNA and the gene have the all the hallmarks of a toxin-antitoxin module. The synthesis of the SymE is tightly repressed at multiple levels; at the transcriptional level by the LexA repressor, at the level of mRNA stability and translation by the SymR RNA and at the level of protein stability by the Lon protease. SymE co-purifies with ribosomes and overproduction of the protein leads to cell growth inhibition, decreased protein synthesis and increased RNA degradation. These properties are shared with several RNA endonuclease toxins of toxin-antitoxin modules. It seems probable that the SymE protein represents an evolutionary derivative of a toxin containing the AbrB fold, whose representatives are typically antitoxins. The SymE promoted cleavage of RNA cleavage may be important for the recycling of RNAs damaged under SOS-inducing conditions []. ; GO: 0003723 RNA binding, 0016788 hydrolase activity, acting on ester bonds, 0016070 RNA metabolic process, 0005737 cytoplasm
Probab=28.89 E-value=96 Score=16.98 Aligned_cols=21 Identities=33% Similarity=0.401 Sum_probs=16.7
Q ss_pred cCCCCC-CCEEEEEeCCcEEEEE
Q 033685 23 LPGLRK-EEVKVEVEDDRVLQIS 44 (113)
Q Consensus 23 lpG~~~-~~i~v~v~~~~~L~I~ 44 (113)
-.||.. +.++|.+..| .|+|+
T Consensus 35 ~aGF~~G~~v~V~v~~g-~lvIt 56 (57)
T PF08845_consen 35 EAGFTIGDPVKVRVMPG-CLVIT 56 (57)
T ss_pred HhCCCCCCEEEEEEECC-EEEEe
Confidence 368854 6899999995 89886
No 118
>PF08918 PhoQ_Sensor: PhoQ Sensor; InterPro: IPR015014 The PhoQ Sensor is required for the virulence of various Gram-negative bacteria by allowing interaction of PhoPQ with the intracellular membrane, resulting in remodelling of the bacterial cell surface and subsequent bacterial resistance to host antimicrobial peptides. The domain contains a major flat acidic surface, which binds to at least 3 calcium ions, neutralising the domain's negative charge and allowing interaction with the negatively charged membrane []. ; GO: 0004673 protein histidine kinase activity, 0005524 ATP binding, 0046872 metal ion binding, 0000160 two-component signal transduction system (phosphorelay), 0018106 peptidyl-histidine phosphorylation, 0016020 membrane; PDB: 1YAX_D 3BQA_B 3BQ8_B.
Probab=27.09 E-value=49 Score=22.54 Aligned_cols=16 Identities=38% Similarity=0.418 Sum_probs=11.2
Q ss_pred EEEEeCCEEEEEEeCC
Q 033685 84 KASMESGVLTVTVPKV 99 (113)
Q Consensus 84 ~A~~~~GiL~I~~pk~ 99 (113)
-|.++||.|+|.+|..
T Consensus 53 LAqW~dnkL~i~~P~~ 68 (180)
T PF08918_consen 53 LAQWEDNKLTIEVPPN 68 (180)
T ss_dssp HEEEETTCEEE---TT
T ss_pred hhheeCCeeEEeCCCc
Confidence 3789999999999975
No 119
>PF14869 DUF4488: Domain of unknown function (DUF4488)
Probab=26.04 E-value=1.9e+02 Score=18.81 Aligned_cols=75 Identities=12% Similarity=0.140 Sum_probs=41.6
Q ss_pred cceecEEEcCCeEEEEEEcCCCCCCCEEEEEeCCcEEEEEEEEeccccCCCCcEEEeeeeeeeEEEEEECCCCcccCc-e
Q 033685 5 PNFINLTETPEAHVFKTDLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQ-I 83 (113)
Q Consensus 5 ~p~~dv~e~~~~~~i~~~lpG~~~~~i~v~v~~~~~L~I~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~-i 83 (113)
.|.+.|.-+|+.|+--+-+|+- +..++..|+....+++ . ..-+..+++.+|.....++ +
T Consensus 26 ~~~lKilS~Dgtf~Ni~~~~~~-----------~aiIt~~GtY~~~sD~---~------Y~E~IeKnv~lp~~~g~~n~l 85 (133)
T PF14869_consen 26 SNVLKILSDDGTFVNITMIPKS-----------GAIITGYGTYEQPSDN---I------YVESIEKNVHLPFLDGKDNEL 85 (133)
T ss_pred cccEEEEcCCCcEEEEEEeCCC-----------CcEEEEeEEEEEcCCc---c------ceeeecceecCcccCCCccEE
Confidence 3455666666655544444431 1345555554443322 1 1224667888886665555 7
Q ss_pred EEEE-eCCEEEEEEeCC
Q 033685 84 KASM-ESGVLTVTVPKV 99 (113)
Q Consensus 84 ~A~~-~~GiL~I~~pk~ 99 (113)
+-++ +|++|.|++--.
T Consensus 86 ~fe~~~dnll~iky~~~ 102 (133)
T PF14869_consen 86 EFELLHDNLLKIKYFLP 102 (133)
T ss_pred EEEecCCCEEEEEEEcC
Confidence 7777 677888877644
No 120
>COG0097 RplF Ribosomal protein L6P/L9E [Translation, ribosomal structure and biogenesis]
Probab=25.85 E-value=2.2e+02 Score=19.46 Aligned_cols=21 Identities=24% Similarity=0.491 Sum_probs=17.0
Q ss_pred CCCCCEEEEEeCCcEEEEEEEE
Q 033685 26 LRKEEVKVEVEDDRVLQISGQR 47 (113)
Q Consensus 26 ~~~~~i~v~v~~~~~L~I~~~~ 47 (113)
.-++++++++++ +.++++|.+
T Consensus 10 ~~P~gV~V~i~~-~~v~vkGpk 30 (178)
T COG0097 10 VIPAGVTVSIEG-QVVTVKGPK 30 (178)
T ss_pred ecCCCeEEEEec-cEEEEECCC
Confidence 348899999997 699998764
No 121
>COG1965 CyaY Protein implicated in iron transport, frataxin homolog [Inorganic ion transport and metabolism]
Probab=25.66 E-value=83 Score=19.70 Aligned_cols=17 Identities=35% Similarity=0.540 Sum_probs=13.8
Q ss_pred eEEEEeCCEEEEEEeCC
Q 033685 83 IKASMESGVLTVTVPKV 99 (113)
Q Consensus 83 i~A~~~~GiL~I~~pk~ 99 (113)
+-+.+.+|+|+|+++..
T Consensus 30 ~D~d~qg~VlTl~f~ng 46 (106)
T COG1965 30 IDCEIQGGVLTLTFDNG 46 (106)
T ss_pred cceecCCCEEEEEECCC
Confidence 55777899999999865
No 122
>PF07873 YabP: YabP family; InterPro: IPR022476 Members of this protein family are the YabP and YqfC proteins of the bacterial sporulation program, as found in Bacillus subtilis, Clostridium tetani, and other spore-forming members of the Firmicutes. ; PDB: 2KYI_B 3IPF_B 2KS0_A.
Probab=25.34 E-value=65 Score=17.93 Aligned_cols=21 Identities=24% Similarity=0.514 Sum_probs=17.1
Q ss_pred CCCCCEEEEEeCCcEEEEEEEE
Q 033685 26 LRKEEVKVEVEDDRVLQISGQR 47 (113)
Q Consensus 26 ~~~~~i~v~v~~~~~L~I~~~~ 47 (113)
++.+.|.+.... +.|.|+|+.
T Consensus 23 f~~~~I~l~t~~-g~l~I~G~~ 43 (66)
T PF07873_consen 23 FDDEEIRLNTKK-GKLTIKGEG 43 (66)
T ss_dssp EETTEEEEEETT-EEEEEEEEE
T ss_pred ECCCEEEEEeCC-EEEEEECce
Confidence 567888888888 499999885
No 123
>COG4004 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.88 E-value=1.7e+02 Score=17.83 Aligned_cols=34 Identities=15% Similarity=0.333 Sum_probs=26.3
Q ss_pred eecEEEcCCeEEEEEEcCCCCCCCEEEEEeCCcEEEEEE
Q 033685 7 FINLTETPEAHVFKTDLPGLRKEEVKVEVEDDRVLQISG 45 (113)
Q Consensus 7 ~~dv~e~~~~~~i~~~lpG~~~~~i~v~v~~~~~L~I~~ 45 (113)
.++|.+.+| .|....||.+ .|.+..++ +.|.|.+
T Consensus 25 g~~v~~eGD--~ivas~pgis--~ieik~E~-kkL~v~t 58 (96)
T COG4004 25 GWTVSEEGD--RIVASSPGIS--RIEIKPEN-KKLLVNT 58 (96)
T ss_pred CeeEeeccc--EEEEecCCce--EEEEeccc-ceEEEec
Confidence 357888888 6677789865 58888888 5899987
No 124
>cd00413 Glyco_hydrolase_16 glycosyl hydrolase family 16. The O-Glycosyl hydrolases are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A glycosyl hydrolase classification system based on sequence similarity has led to the definition of more than 95 different families inlcuding glycosyl hydrolase family 16. Family 16 includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.
Probab=24.86 E-value=2.2e+02 Score=18.98 Aligned_cols=49 Identities=18% Similarity=0.255 Sum_probs=27.8
Q ss_pred CCCCEEEEEeCCcEEEEEEEEecc-ccCCCCcEE--EeeeeeeeEEEEEECCCC
Q 033685 27 RKEEVKVEVEDDRVLQISGQRNIE-KEDKNDTWH--RVERSSGMFSRRFRLPEN 77 (113)
Q Consensus 27 ~~~~i~v~v~~~~~L~I~~~~~~~-~~~~~~~~~--~~e~~~~~f~r~~~lP~~ 77 (113)
.++++. +.+++.|.|++.+... .....+.+. .....+|+|+-++++|..
T Consensus 28 ~~~nv~--~~~~G~L~l~~~~~~~~~~~~sg~i~s~~~~~~yG~~ear~k~~~~ 79 (210)
T cd00413 28 SPNNVY--VENDGGLTLRTDRDQTDGPYSSAEIDSQKNNYTYGYYEARAKLAGG 79 (210)
T ss_pred CccCEE--EeCCCeEEEEEEecCCCCceEeEEEEeCcceEeeEEEEEEEEcCCC
Confidence 455544 4441389999887543 111112222 233456889999999965
No 125
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=24.67 E-value=1.1e+02 Score=18.31 Aligned_cols=26 Identities=31% Similarity=0.570 Sum_probs=20.3
Q ss_pred ECCCCcccCceEEEEeCC--EEEEEEeC
Q 033685 73 RLPENVKMDQIKASMESG--VLTVTVPK 98 (113)
Q Consensus 73 ~lP~~vd~~~i~A~~~~G--iL~I~~pk 98 (113)
.||..+|++.++.+..+| ++-|.+-.
T Consensus 30 ~Lp~~~d~~Sl~V~~~g~~~i~~v~~~~ 57 (104)
T PF13600_consen 30 GLPPSLDPDSLRVSGEGGVTILSVRFRR 57 (104)
T ss_pred CCCcccCCCcEEEEecCCEEEEEEEEEE
Confidence 489999999999998886 55555544
No 126
>PF10988 DUF2807: Protein of unknown function (DUF2807); InterPro: IPR021255 This bacterial family of proteins has no known function. ; PDB: 3JX8_A 3LJY_C 3LYC_A 3PET_A.
Probab=24.23 E-value=70 Score=20.93 Aligned_cols=32 Identities=25% Similarity=0.293 Sum_probs=21.5
Q ss_pred CCeEEEEEEcCCCCCCCEEEEEeCCcEEEEEEE
Q 033685 14 PEAHVFKTDLPGLRKEEVKVEVEDDRVLQISGQ 46 (113)
Q Consensus 14 ~~~~~i~~~lpG~~~~~i~v~v~~~~~L~I~~~ 46 (113)
++.+.+++..|.--.+.+++.+.+ +.|.|+-.
T Consensus 18 g~~~~v~v~~~~~l~~~i~~~v~~-g~L~I~~~ 49 (181)
T PF10988_consen 18 GDSPSVEVEADENLLDRIKVEVKD-GTLKISYK 49 (181)
T ss_dssp -SS-EEEEEEEHHHHCCEEEEEET-TEEEEEE-
T ss_pred CCCcEEEEEEChhhcceEEEEEEC-CEEEEEEC
Confidence 455677777775446788888887 48888866
No 127
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=24.20 E-value=2.4e+02 Score=19.29 Aligned_cols=39 Identities=21% Similarity=0.215 Sum_probs=29.9
Q ss_pred cCCeEEEEEEcCCCCCCCEEEEEeCCcEEEEEEEEecccc
Q 033685 13 TPEAHVFKTDLPGLRKEEVKVEVEDDRVLQISGQRNIEKE 52 (113)
Q Consensus 13 ~~~~~~i~~~lpG~~~~~i~v~v~~~~~L~I~~~~~~~~~ 52 (113)
.++.|.=++.||--..+..+++++++ .|.|.-.+..+..
T Consensus 134 ~~~~~~krv~L~~~~~e~~~~t~nNg-ILEIri~~~~~~~ 172 (177)
T PF05455_consen 134 VGEKYLKRVALPWPDPEITSATFNNG-ILEIRIRRTEESS 172 (177)
T ss_pred cCCceEeeEecCCCccceeeEEEeCc-eEEEEEeecCCCC
Confidence 44456678889855678889999995 9999988876554
No 128
>cd02179 GH16_beta_GRP beta-1,3-glucan recognition protein, member of glycosyl hydrolase family 16. Beta-GRP (beta-1,3-glucan recognition protein) is one of several pattern recognition receptors (PRRs), also referred to as biosensor proteins, that complexes with pathogen-associated beta-1,3-glucans and then transduces signals necessary for activation of an appropriate innate immune response. They are present in insects and lack all catalytic residues. This subgroup also contains related proteins of unknown function that still contain the active site. Their structures adopt a jelly roll fold with a deep active site channel harboring the catalytic residues, like those of other glycosyl hydrolase family 16 members.
Probab=23.65 E-value=3.1e+02 Score=20.37 Aligned_cols=15 Identities=27% Similarity=0.014 Sum_probs=10.9
Q ss_pred EEeCCcEEEEEEEEec
Q 033685 34 EVEDDRVLQISGQRNI 49 (113)
Q Consensus 34 ~v~~~~~L~I~~~~~~ 49 (113)
.+.+| .|.|++....
T Consensus 42 ~v~dG-~L~I~p~~~~ 56 (321)
T cd02179 42 FVKDG-NLVIEPTLLE 56 (321)
T ss_pred EEeCC-eEEEEEeecc
Confidence 45674 8999998754
No 129
>PF14014 DUF4230: Protein of unknown function (DUF4230)
Probab=23.41 E-value=56 Score=21.04 Aligned_cols=24 Identities=25% Similarity=0.563 Sum_probs=17.0
Q ss_pred CcccCceE---EEE--eCCEEEEEEeCCC
Q 033685 77 NVKMDQIK---ASM--ESGVLTVTVPKVE 100 (113)
Q Consensus 77 ~vd~~~i~---A~~--~~GiL~I~~pk~~ 100 (113)
++|.++++ ... +++.|+|++|...
T Consensus 51 GiDLs~i~~~~i~~d~~~~~i~I~LP~~~ 79 (157)
T PF14014_consen 51 GIDLSKIKEEDIEVDEDGKTITITLPPPE 79 (157)
T ss_pred EEEhHHCCcceEEEcCCCCEEEEECCCcE
Confidence 45555555 445 8889999999764
No 130
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=23.39 E-value=1.5e+02 Score=16.73 Aligned_cols=71 Identities=11% Similarity=0.081 Sum_probs=41.3
Q ss_pred EcCCeEEEEEEcCCCCCCCEEEEEeCCcEEEEEEEE-eccccCCCCcEEEeeeeeeeEEE--EEECCCCc--ccCceEEE
Q 033685 12 ETPEAHVFKTDLPGLRKEEVKVEVEDDRVLQISGQR-NIEKEDKNDTWHRVERSSGMFSR--RFRLPENV--KMDQIKAS 86 (113)
Q Consensus 12 e~~~~~~i~~~lpG~~~~~i~v~v~~~~~L~I~~~~-~~~~~~~~~~~~~~e~~~~~f~r--~~~lP~~v--d~~~i~A~ 86 (113)
..++...|.=.+-|+.+.+++|....++...-.+.. ....... .|.|.. .+.++..- +....+|.
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~----------~gt~~~~s~l~v~~~~~~~~~~y~C~ 80 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNS----------DGTYSVSSQLTVSPSDWNSGDTYTCV 80 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCC----------CCCEEEEEEEEECHHHhCCCCCEEEE
Confidence 567788888888999999888887764333222222 1111122 233443 45555442 66667887
Q ss_pred EeCCEE
Q 033685 87 MESGVL 92 (113)
Q Consensus 87 ~~~GiL 92 (113)
..+.-|
T Consensus 81 v~h~~~ 86 (95)
T cd00098 81 VTHESL 86 (95)
T ss_pred EEeCCC
Confidence 766544
No 131
>PF08473 VGCC_alpha2: Neuronal voltage-dependent calcium channel alpha 2acd; InterPro: IPR013680 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. This eukaryotic domain has been found in the neuronal voltage-dependent calcium channel (VGCC) alpha 2a, 2c, and 2d subunits. It is also found in other calcium channel alpha-2/delta subunits to the N terminus of a Cache domain (IPR004010 from INTERPRO).
Probab=23.12 E-value=55 Score=19.97 Aligned_cols=35 Identities=23% Similarity=0.301 Sum_probs=28.8
Q ss_pred eeeeEEEEEECCCCcccCceEEEEeCCEEEEEEeCC
Q 033685 64 SSGMFSRRFRLPENVKMDQIKASMESGVLTVTVPKV 99 (113)
Q Consensus 64 ~~~~f~r~~~lP~~vd~~~i~A~~~~GiL~I~~pk~ 99 (113)
..-.|+-.+.||. ....-|+|.+.|-+|.+...+.
T Consensus 52 ~gT~ySLaLVLP~-Ys~~~i~A~l~d~i~q~~~~~~ 86 (94)
T PF08473_consen 52 NGTDYSLALVLPS-YSMYYIQANLSDTILQAKSKKS 86 (94)
T ss_pred CCCcceeEEEcCC-CccceeecccchHHHHHHhhcc
Confidence 3457999999996 8888899999999888876654
No 132
>PRK13726 conjugal transfer pilus assembly protein TraE; Provisional
Probab=22.81 E-value=2e+02 Score=19.68 Aligned_cols=52 Identities=17% Similarity=0.054 Sum_probs=28.7
Q ss_pred CCCEEEEEeCCcEEEEEEEEeccccCCCCcEEEeeeeeeeEEEEEECCCCcccCceEEEEeCCEEEEEEeC
Q 033685 28 KEEVKVEVEDDRVLQISGQRNIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESGVLTVTVPK 98 (113)
Q Consensus 28 ~~~i~v~v~~~~~L~I~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~A~~~~GiL~I~~pk 98 (113)
+..+.+.... +.+.|+|..+.....+ .+......-.++-+|++|.|.+.=-+
T Consensus 130 ~~~i~v~~~~-~~V~V~Gtlkt~vg~~------------------~~~~~~k~Y~l~~~y~~G~l~L~~f~ 181 (188)
T PRK13726 130 QTSVRVWPQY-GRVDIRGVLKTWIGDS------------------KPFTEIKHYILILKRENGVTWLDNFG 181 (188)
T ss_pred eeeEEEccCC-CEEEEEEEEEEEECCc------------------ccCchheEEEEEEEEcCCEEEEEEEE
Confidence 3566666666 5888888865432110 01111222336677889988876433
No 133
>PRK09965 3-phenylpropionate dioxygenase ferredoxin subunit; Provisional
Probab=22.76 E-value=1.8e+02 Score=17.44 Aligned_cols=26 Identities=15% Similarity=0.400 Sum_probs=19.4
Q ss_pred CCCcccCceEEEEeCCEEEEEEeCCC
Q 033685 75 PENVKMDQIKASMESGVLTVTVPKVE 100 (113)
Q Consensus 75 P~~vd~~~i~A~~~~GiL~I~~pk~~ 100 (113)
|.........++.++|.+.|.++..+
T Consensus 80 p~~~~l~~y~v~v~~g~v~v~~~~~~ 105 (106)
T PRK09965 80 PATDPLRTYPVHVEGGDIFIDLPEAQ 105 (106)
T ss_pred CCCCCcceEeEEEECCEEEEEccCCC
Confidence 44445666778889999999998654
No 134
>TIGR03780 Bac_Flav_CT_N Bacteroides conjugative transposon TraN protein. Members of this family are the TraN protein encoded by transfer region genes of conjugative transposons of Bacteroides. The family is related to conjugative transfer proteins VirB9 and TrbG of Agrobacterium Ti plasmids.
Probab=22.66 E-value=3.2e+02 Score=20.17 Aligned_cols=83 Identities=13% Similarity=0.267 Sum_probs=42.7
Q ss_pred cEEEcCCeEEEEEEcC-----CCCCCCEEEEEeCCcEEEEEEEEeccccCCCCcEEEeee--eeeeEEEEEECCCCcccC
Q 033685 9 NLTETPEAHVFKTDLP-----GLRKEEVKVEVEDDRVLQISGQRNIEKEDKNDTWHRVER--SSGMFSRRFRLPENVKMD 81 (113)
Q Consensus 9 dv~e~~~~~~i~~~lp-----G~~~~~i~v~v~~~~~L~I~~~~~~~~~~~~~~~~~~e~--~~~~f~r~~~lP~~vd~~ 81 (113)
.++-.+|.+.+++.+- .++-+.|.+.+.|.+.-.-++..+.+.. .-..+..... ..++++-.|.||.
T Consensus 175 ~Iy~~~d~lyf~~~l~N~Sni~ydID~irfki~DKK~~KrTa~Qe~ei~-Pl~~~n~~~~i~gk~~~r~V~vl~K----- 248 (285)
T TIGR03780 175 GIYTHNDLLYFHTSLENKTNIPFDIDFIRFKIVDKKKAKRTAMQEIEID-PLRVYNSVIVIAGKSTYRTVYVLPK----- 248 (285)
T ss_pred eEEEECCEEEEEEEEEcCCCCCcEeEEEEEEEEecchhhcceeeeEEEE-eEEEeccccEEcCCceEEEEEEEec-----
Confidence 5677888888988884 4556667777765322222222221110 0000000011 1235666777773
Q ss_pred ceEEEE-eCCEEEEEEeCCC
Q 033685 82 QIKASM-ESGVLTVTVPKVE 100 (113)
Q Consensus 82 ~i~A~~-~~GiL~I~~pk~~ 100 (113)
-++ +|-+|.|.+--++
T Consensus 249 ---fTiPddKvL~IEi~Ekn 265 (285)
T TIGR03780 249 ---FTIPDDKLLTIEMYEKN 265 (285)
T ss_pred ---ccCCCCcEEEEEEEEcC
Confidence 334 4567888877665
No 135
>PF11730 DUF3297: Protein of unknown function (DUF3297); InterPro: IPR021724 This family is expressed in Proteobacteria and Actinobacteria. The function is not known.
Probab=22.38 E-value=1.7e+02 Score=16.82 Aligned_cols=27 Identities=19% Similarity=0.287 Sum_probs=20.0
Q ss_pred EeCCEEEEEEeCCCCCCCCeEEEEcCC
Q 033685 87 MESGVLTVTVPKVEVTKPDVKAIEISG 113 (113)
Q Consensus 87 ~~~GiL~I~~pk~~~~~~~~~~I~I~~ 113 (113)
...|+..|..+|......++--|.++|
T Consensus 39 iSEGWvrv~~gka~DR~G~Pl~iklkG 65 (71)
T PF11730_consen 39 ISEGWVRVAAGKALDRRGNPLTIKLKG 65 (71)
T ss_pred ccCCEEEeecCcccccCCCeeEEEEcc
Confidence 478888888888877666666666655
No 136
>cd02180 GH16_fungal_KRE6_glucanase Saccharomyces cerevisiae KRE6 and related glucanses, member of glycosyl hydrolase family 16. KRE6 is a Saccharomyces cerevisiae glucanase that participates in the synthesis of beta-1,6-glucan, a major structural component of the cell wall. It is a golgi membrane protein required for normal beta-1,6-glucan levels in the cell wall. KRE6 is closely realted to laminarinase, a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=22.36 E-value=3.3e+02 Score=20.09 Aligned_cols=46 Identities=13% Similarity=0.141 Sum_probs=26.7
Q ss_pred CCCEEEEEeCCcEEEEEEEEeccccCC--CCcEEE---eeeeeeeEEEEEECCC
Q 033685 28 KEEVKVEVEDDRVLQISGQRNIEKEDK--NDTWHR---VERSSGMFSRRFRLPE 76 (113)
Q Consensus 28 ~~~i~v~v~~~~~L~I~~~~~~~~~~~--~~~~~~---~e~~~~~f~r~~~lP~ 76 (113)
++++ .+.+| .|.|++.+......+ .+.+.. ....+|.|+-.++||.
T Consensus 40 ~~nv--~v~~G-~L~I~a~~~~~~~~~ytSg~i~T~~k~~f~yG~~EaR~klp~ 90 (295)
T cd02180 40 PDAV--TTING-SLRITMDQFRNHGLNFRSGMLQSWNKLCFTGGYIEASASLPG 90 (295)
T ss_pred CcCe--EecCC-eEEEEEEeecCCCCCEEEEEEEECCcceeeCCEEEEEEECCC
Confidence 3444 45675 899999875321111 111221 2335778999999996
No 137
>PF12080 GldM_C: GldM C-terminal domain; InterPro: IPR022719 This domain is found in bacteria at the C terminus of the GldM protein. This domain is typically between 169 to 182 amino acids in length and has two completely conserved residues (Y and N) that may be functionally important. GldM, is named for the member from Bacteriodetes Flavobacterium johnsoniae, which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes [].
Probab=22.19 E-value=1.5e+02 Score=20.15 Aligned_cols=37 Identities=16% Similarity=0.208 Sum_probs=24.7
Q ss_pred eecEEEcCCeEEEEEEcCCCCCCCEEEEEeCCcEEEEE
Q 033685 7 FINLTETPEAHVFKTDLPGLRKEEVKVEVEDDRVLQIS 44 (113)
Q Consensus 7 ~~dv~e~~~~~~i~~~lpG~~~~~i~v~v~~~~~L~I~ 44 (113)
.|++...+=.=-|.+.+||+..+.+.++..++ .|.=.
T Consensus 6 ~MNVLY~G~~NpisIsvpgv~~~~v~~s~~gg-sl~~~ 42 (181)
T PF12080_consen 6 KMNVLYRGVDNPISISVPGVPSNKVPASATGG-SLSKS 42 (181)
T ss_pred ccceEecCCCCcEEEEeCCCCccccEEEeeCC-EEEec
Confidence 34555444444578889999999999887763 44433
No 138
>cd01759 PLAT_PL PLAT/LH2 domain of pancreatic triglyceride lipase. Lipases hydrolyze phospholipids and triglycerides to generate fatty acids for energy production or for storage and to release inositol phosphates that act as second messengers. The central role of triglyceride lipases is in energy production. The proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins.
Probab=22.06 E-value=2.1e+02 Score=17.87 Aligned_cols=33 Identities=24% Similarity=0.443 Sum_probs=19.0
Q ss_pred eEEEEEECCCCc-ccCceEEEEeCCEEEEEEeCC
Q 033685 67 MFSRRFRLPENV-KMDQIKASMESGVLTVTVPKV 99 (113)
Q Consensus 67 ~f~r~~~lP~~v-d~~~i~A~~~~GiL~I~~pk~ 99 (113)
.|..-+....++ +...++-.|++.++-...|+.
T Consensus 45 tys~li~~d~dvG~l~~Vkf~W~~~~~n~~~p~~ 78 (113)
T cd01759 45 TYSAFIDVDVDVGPLTKVKFIWNNNVINITLPKV 78 (113)
T ss_pred EEEEEEEccCCCCCEEEEEEEEeCCccCCCCCeE
Confidence 455556555554 444566667777665544443
No 139
>PRK01379 cyaY frataxin-like protein; Provisional
Probab=21.57 E-value=97 Score=19.17 Aligned_cols=15 Identities=13% Similarity=0.419 Sum_probs=11.6
Q ss_pred eEEEEeCCEEEEEEe
Q 033685 83 IKASMESGVLTVTVP 97 (113)
Q Consensus 83 i~A~~~~GiL~I~~p 97 (113)
+.+.+.+|+|+|++.
T Consensus 30 ~D~e~~~gVLtl~~~ 44 (103)
T PRK01379 30 IDVDLQGDILNLDTD 44 (103)
T ss_pred eeeeccCCEEEEEeC
Confidence 667778899988864
No 140
>TIGR02856 spore_yqfC sporulation protein YqfC. This small protein, designated YqfC in Bacillus subtilis, is both restricted to and universal in sporulating species of the Firmcutes, such as Bacillus subtilis and Clostridium perfringens. It is part of the sigma(E)-controlled regulon, and its mutation leads to a sporulation defect.
Probab=21.52 E-value=84 Score=18.62 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=17.5
Q ss_pred CCCCCCEEEEEeCCcEEEEEEEE
Q 033685 25 GLRKEEVKVEVEDDRVLQISGQR 47 (113)
Q Consensus 25 G~~~~~i~v~v~~~~~L~I~~~~ 47 (113)
-|+.+.|.+....| .|.|+|+.
T Consensus 40 ~y~~~~I~l~t~~G-~l~I~G~~ 61 (85)
T TIGR02856 40 VFSPEEVKLNSTNG-KITIEGKN 61 (85)
T ss_pred EECCCEEEEEcCce-EEEEEccc
Confidence 45788888888884 89999874
No 141
>TIGR02934 nifT_nitrog probable nitrogen fixation protein FixT. This largely uncharacterized protein family is assigned a role in nitrogen fixation by two criteria. First, its gene occurs, generally, among genes essential for expression of active nitrogenase. Second, its phylogenetic profile closely matches that of nitrogen-fixing bacteria. However, mutational studies in Klebsiella pneumoniae failed to demonstrate any phenotype for deletion or overexpression of the protein.
Probab=21.50 E-value=99 Score=17.69 Aligned_cols=15 Identities=33% Similarity=0.596 Sum_probs=10.8
Q ss_pred eCCEEEEEEeCCCCC
Q 033685 88 ESGVLTVTVPKVEVT 102 (113)
Q Consensus 88 ~~GiL~I~~pk~~~~ 102 (113)
.+|.|.+.+||+.-+
T Consensus 9 ~~g~l~~YvpKKDLE 23 (67)
T TIGR02934 9 RAGELSAYVPKKDLE 23 (67)
T ss_pred CCCCEEEEEECCcch
Confidence 456788888888643
No 142
>cd03863 M14_CPD_II The second carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain II. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, while the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally ac
Probab=21.27 E-value=1.7e+02 Score=22.33 Aligned_cols=28 Identities=18% Similarity=0.237 Sum_probs=20.9
Q ss_pred CCeEEEEEEcCCCCCCCEEEEEeCCcEE
Q 033685 14 PEAHVFKTDLPGLRKEEVKVEVEDDRVL 41 (113)
Q Consensus 14 ~~~~~i~~~lpG~~~~~i~v~v~~~~~L 41 (113)
.+.|.|++..+|+....++|.|..++..
T Consensus 340 pG~ytl~vs~~GY~~~~~~v~V~~~~~~ 367 (375)
T cd03863 340 PGTYKVTASARGYDPVTKTVEVDSKGAV 367 (375)
T ss_pred CeeEEEEEEEcCcccEEEEEEEcCCCcE
Confidence 4568888888888888888888765333
No 143
>PF03368 Dicer_dimer: Dicer dimerisation domain; InterPro: IPR005034 This domain is found in members of the Dicer protein family of dsRNA nucleases. This entry represents a dsRNA-binding domain. RNA interference (RNAi) is an ancient gene-silencing process that plays a fundamental role in diverse eukaryotic functions including viral defence, chromatin remodelling, genome rearrangement, developmental timing, brain morphogenesis, and stem cell maintenance. All RNAi pathways require the multidomain ribonuclease Dicer, which initiates RNAi by cleaving double-stranded RNA (dsRNA) substrates into small fragments ~25 nuleotides in length. A typical eukaryotic Dicer consists of a helicase domain (PDOC51192 from PROSITEDOC), a domain of unknown function, and a PAZ domain (PDOC50821 from PROSITEDOC) at the amino (N)-terminus as well as two ribonuclease III domains (PDOC00448 from PROSITEDOC) and a dsRNA-binding domain (dsRBD) (PDOC50137 from PROSITEDOC) at the carboxy (C)-terminus. The domain of unknown function of ~100 amino acids is predicted to adopt the canonical alpha-beta-beta-beta-alpha-fold found in all dsRBDs [, , , ].; GO: 0016891 endoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2KOU_A.
Probab=20.97 E-value=1.3e+02 Score=17.71 Aligned_cols=24 Identities=8% Similarity=0.020 Sum_probs=14.4
Q ss_pred eecceecEEEcCCeEEEEEEcCCC
Q 033685 3 LIPNFINLTETPEAHVFKTDLPGL 26 (113)
Q Consensus 3 ~~~p~~dv~e~~~~~~i~~~lpG~ 26 (113)
...|.+.+...++.|.-++.||.-
T Consensus 19 ~~~P~~~~~~~~~~~~c~v~LP~~ 42 (90)
T PF03368_consen 19 NLKPEFEIEKIGSGFICTVILPIN 42 (90)
T ss_dssp -SS-EEEEEE--G-EEEEEE--TT
T ss_pred cCCceEEEEEcCCcEEEEEECCCC
Confidence 347888999999999999999953
No 144
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=20.88 E-value=2.9e+02 Score=21.74 Aligned_cols=30 Identities=20% Similarity=0.268 Sum_probs=20.9
Q ss_pred CeEEEEEEcCCCCCCCEEEEEeCCcEEEEE
Q 033685 15 EAHVFKTDLPGLRKEEVKVEVEDDRVLQIS 44 (113)
Q Consensus 15 ~~~~i~~~lpG~~~~~i~v~v~~~~~L~I~ 44 (113)
+.|.+.+-++|+++++-.+-+...+.....
T Consensus 115 ~~~dvvl~l~g~dpdethiiiskkr~~~~Y 144 (512)
T COG4070 115 EAFDVVLSLSGFDPDETHIIISKKRHVAEY 144 (512)
T ss_pred ccceEEEEccCCCCCcceEEEEecceeeEe
Confidence 368889999999998877666643333333
No 145
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=20.79 E-value=1e+02 Score=18.03 Aligned_cols=18 Identities=17% Similarity=0.348 Sum_probs=15.2
Q ss_pred ceEEEEeCCEEEEEEeCC
Q 033685 82 QIKASMESGVLTVTVPKV 99 (113)
Q Consensus 82 ~i~A~~~~GiL~I~~pk~ 99 (113)
.++|.|.+.+..+++|..
T Consensus 2 ~vK~~~~~d~~r~~l~~~ 19 (82)
T cd06407 2 RVKATYGEEKIRFRLPPS 19 (82)
T ss_pred EEEEEeCCeEEEEEcCCC
Confidence 478999999999999854
No 146
>PLN02711 Probable galactinol--sucrose galactosyltransferase
Probab=20.32 E-value=1.9e+02 Score=24.44 Aligned_cols=37 Identities=19% Similarity=0.301 Sum_probs=25.5
Q ss_pred ECC--CCcccCceEEEEeCCEEEEEEeCCCCCCCCeEEEEc
Q 033685 73 RLP--ENVKMDQIKASMESGVLTVTVPKVEVTKPDVKAIEI 111 (113)
Q Consensus 73 ~lP--~~vd~~~i~A~~~~GiL~I~~pk~~~~~~~~~~I~I 111 (113)
..| +.+|...+.-+|++|.|++.+|-.... ....|+|
T Consensus 737 ~~P~~c~v~~~~~~f~y~~g~~~~~~~~~~~~--~~~~v~~ 775 (777)
T PLN02711 737 EKPRSCKIDGEEVEFGYEDCMVVVQVPWSGSS--GLSLIEY 775 (777)
T ss_pred CCCeEEEECCEEeeeEecCCEEEEEecCCCcC--CceeEEE
Confidence 445 446767777778999999999987632 3344554
Done!