RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 033685
(113 letters)
>gnl|CDD|107229 cd06472, ACD_ScHsp26_like, Alpha crystallin domain (ACD) found in
Saccharomyces cerevisiae (Sc) small heat shock protein
(Hsp)26 and similar proteins. sHsps are molecular
chaperones that suppress protein aggregation and
protect against cell stress, and are generally active
as large oligomers consisting of multiple subunits.
ScHsp26 is temperature-regulated, it switches from an
inactive to a chaperone-active form upon elevation in
temperature. It associates into large 24-mers storage
forms which upon heat shock disassociate into dimers.
These dimers initiate the interaction with non-native
substrate proteins and re-assemble into large globular
assemblies having one monomer of substrate bound per
dimer. This group also contains Arabidopsis thaliana
(Ath) Hsp15.7, a peroxisomal matrix protein which can
complement the morphological phenotype of S. cerevisiae
mutants deficient in Hsps26. AthHsp15.7 is minimally
expressed under normal conditions and is strongly
induced by heat and oxidative stress. Also belonging to
this group is wheat HSP16.9 which differs in quaternary
structure from the shell-type particles of ScHsp26, it
assembles as a dodecameric double disc, with each disc
organized as a trimer of dimers.
Length = 92
Score = 145 bits (369), Expect = 4e-47
Identities = 63/87 (72%), Positives = 74/87 (85%)
Query: 12 ETPEAHVFKTDLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKNDTWHRVERSSGMFSRR 71
ETPEAHVFK D+PG++KE+VKVEVED RVL+ISG+R E+E K D WHRVERSSG F RR
Sbjct: 6 ETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRR 65
Query: 72 FRLPENVKMDQIKASMESGVLTVTVPK 98
FRLPEN D++KA +E+GVLTVTVPK
Sbjct: 66 FRLPENADADEVKAFLENGVLTVTVPK 92
>gnl|CDD|215655 pfam00011, HSP20, Hsp20/alpha crystallin family.
Length = 101
Score = 116 bits (293), Expect = 2e-35
Identities = 49/101 (48%), Positives = 67/101 (66%), Gaps = 3/101 (2%)
Query: 12 ETPEAHVFKTDLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKNDTWHRVERSSGMFSRR 71
E +A V K D+PG + EE+KV+VED+RVL EKE+++D R ERS FSR+
Sbjct: 4 EDKDAFVVKLDVPGFKPEELKVKVEDNRVLVKGKH---EKEEEDDHGLRSERSYRSFSRK 60
Query: 72 FRLPENVKMDQIKASMESGVLTVTVPKVEVTKPDVKAIEIS 112
F LPEN D++KAS++ GVLTVTVPK+E + + I+I
Sbjct: 61 FVLPENADPDKVKASLKDGVLTVTVPKLEPPEKKPRRIQIQ 101
>gnl|CDD|107221 cd06464, ACD_sHsps-like, Alpha-crystallin domain (ACD) of
alpha-crystallin-type small(s) heat shock proteins
(Hsps). sHsps are small stress induced proteins with
monomeric masses between 12 -43 kDa, whose common
feature is the Alpha-crystallin domain (ACD). sHsps
are generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps.
Length = 88
Score = 101 bits (254), Expect = 1e-29
Identities = 51/90 (56%), Positives = 71/90 (78%), Gaps = 2/90 (2%)
Query: 9 NLTETPEAHVFKTDLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKNDTWHRVERSSGMF 68
++ ET +A+V + DLPG +KE++KVEVED VL ISG+R E+E++ + + R ERS G F
Sbjct: 1 DVYETDDAYVVEADLPGFKKEDIKVEVEDG-VLTISGEREEEEEEE-ENYLRRERSYGSF 58
Query: 69 SRRFRLPENVKMDQIKASMESGVLTVTVPK 98
SR FRLPE+V D+IKAS+E+GVLT+T+PK
Sbjct: 59 SRSFRLPEDVDPDKIKASLENGVLTITLPK 88
>gnl|CDD|223149 COG0071, IbpA, Molecular chaperone (small heat shock protein)
[Posttranslational modification, protein turnover,
chaperones].
Length = 146
Score = 92.1 bits (229), Expect = 3e-25
Identities = 41/105 (39%), Positives = 67/105 (63%), Gaps = 1/105 (0%)
Query: 8 INLTETPEAHVFKTDLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKNDTWHRVERSSGM 67
+++ ET + + +LPG+ KE++++ VE + + I G+R E+E++ + + R ER+ G
Sbjct: 43 VDIEETDDEYRITAELPGVDKEDIEITVEGNTLT-IRGEREEEEEEEEEGYLRRERAYGE 101
Query: 68 FSRRFRLPENVKMDQIKASMESGVLTVTVPKVEVTKPDVKAIEIS 112
F R FRLPE V + IKA ++G+LTVT+PK E + K IEI
Sbjct: 102 FERTFRLPEKVDPEVIKAKYKNGLLTVTLPKAEPEEKKPKRIEIE 146
>gnl|CDD|107228 cd06471, ACD_LpsHSP_like, Group of bacterial proteins containing
an alpha crystallin domain (ACD) similar to
Lactobacillus plantarum (Lp) small heat shock proteins
(sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are
molecular chaperones that suppress protein aggregation
and protect against cell stress, and are generally
active as large oligomers consisting of multiple
subunits. Transcription of the genes encoding Lp HSP
18.5, 18.55 and 19.3 is regulated by a variety of
stresses including heat, cold and ethanol. Early
growing L. plantarum cells contain elevated levels of
these mRNAs which rapidly fall of as the cells enter
stationary phase. Also belonging to this group is
Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis
(syn. Leuconostoc oenos) (Oo) HSP18. Transcription of
the gene encoding BbHSP20 is strongly induced following
heat or osmotic shock, and that of the gene encoding
OoHSP18 following heat, ethanol or acid shock. OoHSP18
is peripherally associated with the cytoplasmic
membrane.
Length = 93
Score = 84.5 bits (210), Expect = 8e-23
Identities = 39/89 (43%), Positives = 58/89 (65%), Gaps = 4/89 (4%)
Query: 12 ETPEAHVFKTDLPGLRKEEVKVEVEDDRVLQISGQRNIEKE--DKNDTWHRVERSSGMFS 69
ET + ++ + DLPG +KE++K++ +D L IS +R+ K+ DK + R ER G FS
Sbjct: 7 ETDDEYIVEADLPGFKKEDIKLDYKDG-YLTISAKRDESKDEKDKKGNYIRRERYYGSFS 65
Query: 70 RRFRLPENVKMDQIKASMESGVLTVTVPK 98
R F LP NV ++IKA E+GVL +T+PK
Sbjct: 66 RSFYLP-NVDEEEIKAKYENGVLKITLPK 93
>gnl|CDD|107219 cd00298, ACD_sHsps_p23-like, This domain family includes the
alpha-crystallin domain (ACD) of alpha-crystallin-type
small heat shock proteins (sHsps) and a similar domain
found in p23-like proteins. sHsps are small stress
induced proteins with monomeric masses between 12 -43
kDa, whose common feature is this ACD. sHsps are
generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps. p23 is a cochaperone of the Hsp90 chaperoning
pathway. It binds Hsp90 and participates in the folding
of a number of Hsp90 clients including the progesterone
receptor. p23 also has a passive chaperoning activity.
p23 in addition may act as the cytosolic prostaglandin
E2 synthase. Included in this family is the p23-like
C-terminal CHORD-SGT1 (CS) domain of suppressor of G2
allele of Skp1 (Sgt1) and the p23-like domains of
human butyrate-induced transcript 1 (hB-ind1), NUD
(nuclear distribution) C, Melusin, and NAD(P)H
cytochrome b5 (NCB5) oxidoreductase (OR).
Length = 80
Score = 76.9 bits (190), Expect = 6e-20
Identities = 42/88 (47%), Positives = 58/88 (65%), Gaps = 9/88 (10%)
Query: 11 TETPEAHVFKTDLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKNDTWHRVERSSGMFSR 70
+T + V DLPG++KE++KVEVED+ L ISG+R E+E ERS G F R
Sbjct: 2 YQTDDEVVVTVDLPGVKKEDIKVEVEDNV-LTISGKREEEEE--------RERSYGEFER 52
Query: 71 RFRLPENVKMDQIKASMESGVLTVTVPK 98
F LPE+V ++ KAS+E+GVL +T+PK
Sbjct: 53 SFELPEDVDPEKSKASLENGVLEITLPK 80
>gnl|CDD|107247 cd06526, metazoan_ACD, Alpha-crystallin domain (ACD) of metazoan
alpha-crystallin-type small(s) heat shock proteins
(Hsps). sHsps are small stress induced proteins with
monomeric masses between 12 -43 kDa, whose common
feature is the Alpha-crystallin domain (ACD). sHsps
are generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps.
Length = 83
Score = 58.7 bits (143), Expect = 8e-13
Identities = 28/78 (35%), Positives = 47/78 (60%), Gaps = 9/78 (11%)
Query: 22 DLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMD 81
D+ G + EE+KV+V D++++ + G+ E++ D V R F+RR++LPE V D
Sbjct: 14 DVKGFKPEELKVKVSDNKLV-VEGKH----EEREDEHGYVSRE---FTRRYQLPEGVDPD 65
Query: 82 QIKASM-ESGVLTVTVPK 98
+ +S+ GVLT+ PK
Sbjct: 66 SVTSSLSSDGVLTIEAPK 83
>gnl|CDD|107227 cd06470, ACD_IbpA-B_like, Alpha-crystallin domain (ACD) found in
Escherichia coli inclusion body-associated proteins
IbpA and IbpB, and similar proteins. IbpA and IbpB are
16 kDa small heat shock proteins (sHsps). sHsps are
molecular chaperones that suppress protein aggregation
and protect against cell stress, and are generally
active as large oligomers consisting of multiple
subunits. IbpA and IbpB are produced during high-level
production of various heterologous proteins,
specifically human prorenin, renin and bovine
insulin-like growth factor 2 (bIGF-2), and are strongly
associated with inclusion bodies containing these
heterologous proteins. IbpA and IbpB work as an
integrated system to stabilize thermally aggregated
proteins in a disaggregation competent state. The
chaperone activity of IbpB is also significantly
elevated as the temperature increases from normal to
heat shock. The high temperature results in the
disassociation of 2-3-MDa IbpB oligomers into smaller
approximately 600-kDa structures. This elevated
activity seen under heat shock conditions is retained
for an extended period of time after the temperature is
returned to normal. IbpA also forms multimers.
Length = 90
Score = 51.8 bits (125), Expect = 4e-10
Identities = 20/72 (27%), Positives = 45/72 (62%), Gaps = 4/72 (5%)
Query: 23 LPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQ 82
+ G ++++++EVE++ L ++G++ E+ ++ + HR + F R F L ++VK+
Sbjct: 19 VAGFSEDDLEIEVENN-QLTVTGKKADEENEEREYLHR-GIAKRAFERSFNLADHVKVKG 76
Query: 83 IKASMESGVLTV 94
A +E+G+LT+
Sbjct: 77 --AELENGLLTI 86
>gnl|CDD|107233 cd06478, ACD_HspB4-5-6, Alpha-crystallin domain found in
alphaA-crystallin (HspB4), alphaB-crystallin (HspB5),
and the small heat shock protein (sHsp) HspB6, also
known as Hsp20. sHsps are molecular chaperones that
suppress protein aggregation and protect against cell
stress, and are generally active as large oligomers
consisting of multiple subunits. Alpha crystallin, an
abundant protein in the mammalian lens, is a large (700
kDa) heteropolymer composed of HspB4 and HspB5,
generally in a molar ratio of HspB4:HspB5 of 3:1. Only
trace amounts of HspB4 are found in tissues other than
the lens. HspB5 on the other hand is also expressed
constitutively in other tissues including brain, heart,
and type I and type IIa skeletal muscle fibers, and in
several cancers including gliomas, renal cell
carcinomas, basal-like and metaplastic breast
carcinomas, and head and neck cancer. HspB5's
functions include effects on the apoptotic pathway and
on metastasis. Phosphorylation of HspB5 reduces its
oligomerization and anti-apoptotic activities. HspB5
is protective in demyelinating disease such as multiple
sclerosis (MS), being a negative regulator of
inflammation. In early active MS lesions it is the most
abundant gene transcript and an autoantigen, the immune
response against it would disrupt its function and
worsen inflammation and demyelination. Given as therapy
for ongoing demyelinating disease it may counteract
this effect. It is an autoantigen in the pathogenesis
of various other inflammatory disorders including
Lens-associated uveitis (LAU), and Behcet's disease.
Mutations in HspB5 have been associated with diseases
including dominant cataract and desmin-related
myopathy. Mutations in HspB4 have been associated with
Autosomal Dominant Congenital Cataract (ADCC). HspB6
(Hsp20) is ubiquitous and is involved in diverse
functions including regulation of glucose transport and
contraction of smooth muscle, in platelet aggregation,
in cardioprotection, and in the prevention of
apoptosis. It interacts with the universal scaffolding
and adaptor protein 14-3-3, and also with the
proapoptotic protein Bax.
Length = 83
Score = 37.0 bits (86), Expect = 2e-04
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 9/71 (12%)
Query: 29 EEVKVEVEDDRVLQISGQRNIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASME 88
EE+ V+V D V +I G+ E++ D + R F RR+RLP V I +S+
Sbjct: 21 EELSVKVLGDFV-EIHGKH----EERQDEHGFISRE---FHRRYRLPPGVDPAAITSSLS 72
Query: 89 S-GVLTVTVPK 98
+ GVLT++ P+
Sbjct: 73 ADGVLTISGPR 83
>gnl|CDD|107245 cd06497, ACD_alphaA-crystallin_HspB4, Alpha-crystallin domain
found in the small heat shock protein (sHsp)
alphaA-crystallin (HspB4, 20kDa). sHsps are molecular
chaperones that suppress protein aggregation and
protect against cell stress, and are generally active
as large oligomers consisting of multiple subunits.
Alpha crystallin, an abundant protein in the mammalian
lens, is a large (700 kDa) heteropolymer composed of
HspB4 and HspB5, generally in a molar ratio of
HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are
found in tissues other than the lens. HspB5 does not
belong to this group. Mutations inHspB4 have been
associated with Autosomal Dominant Congenital Cataract
(ADCC). The chaperone-like functions of HspB4 are
considered important for maintaining lens transparency
and preventing cataract.
Length = 86
Score = 36.1 bits (83), Expect = 5e-04
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 22 DLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMD 81
D+ E++ V+V DD V +I G+ + E++D + R F RR+RLP NV
Sbjct: 17 DVKHFSPEDLTVKVLDDYV-EIHGKHS-ERQDDHGYISR------EFHRRYRLPSNVDQS 68
Query: 82 QIKASMES-GVLTVTVPK 98
I S+ + G+LT + PK
Sbjct: 69 AITCSLSADGMLTFSGPK 86
>gnl|CDD|107230 cd06475, ACD_HspB1_like, Alpha crystallin domain (ACD) found in
mammalian small (s)heat shock protein (Hsp)-27 (also
denoted HspB1 in human) and similar proteins. sHsps are
molecular chaperones that suppress protein aggregation
and protect against cell stress, and are generally
active as large oligomers consisting of multiple
subunits. Hsp27 shows enhanced synthesis in response to
stress. It is a molecular chaperone which interacts
with a large number of different proteins. It is found
in many types of human cells including breast, uterus,
cervix, platelets and cancer cells. Hsp27 has diverse
cellular functions including, chaperoning, regulation
of actin polymerization, keratinocyte differentiation,
regulation of inflammatory pathways in keratinocytes,
and protection from oxidative stress through modulating
glutathione levels. It is also a subunit of
AUF1-containing protein complexes. It has been linked
to several transduction pathways regulating cellular
functions including differentiation, cell growth,
development, and apoptosis. Its activity can be
regulated by phosphorylation. Its unphosphorylated
state is a high molecular weight aggregated form
(100-800kDa) composed of up to 24 subunits, which forms
as a result of multiple interactions within the ACD,
and is required for chaperone function and resistance
to oxidative stress. Upon phosphorylation these large
aggregates rapidly disassociate to smaller oligomers
and chaperone activity is modified. High constitutive
levels of Hsp27 have been detected in various cancer
cells, in particular those of carcinoma origin.
Over-expression of Hsp27 has a protective effect
against various diseases-processes, including
Huntington's disease. Mutations in Hsp27 have been
associated with a form of distal hereditary motor
neuropathy type II and Charcot-Marie-Tooth disease type
2.
Length = 86
Score = 32.9 bits (75), Expect = 0.007
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 9/77 (11%)
Query: 22 DLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMD 81
D+ EE+ V+ +D V++I+G+ E+K D V R F+R++ LP V
Sbjct: 17 DVNHFAPEELVVKTKDG-VVEITGKH----EEKQDEHGFVSRC---FTRKYTLPPGVDPT 68
Query: 82 QIKASME-SGVLTVTVP 97
+ +S+ G+LTV P
Sbjct: 69 AVTSSLSPDGILTVEAP 85
>gnl|CDD|107246 cd06498, ACD_alphaB-crystallin_HspB5, Alpha-crystallin domain
found in the small heat shock protein (sHsp)
alphaB-crystallin (HspB5, 20kDa). sHsps are molecular
chaperones that suppress protein aggregation and
protect against cell stress, and are generally active
as large oligomers consisting of multiple subunits.
Alpha crystallin, an abundant protein in the mammalian
lens, is a large (700 kDa) heteropolymer composed of
HspB4 and HspB5, generally in a molar ratio of
HspB4:HspB5 of 3:1. HspB4 does not belong to this
group. HspB5 shows increased synthesis in response to
stress. HspB5 is also expressed constitutively in other
tissues including brain, heart, and type I and type IIa
skeletal muscle fibers, and in several cancers
including gliomas, renal cell carcinomas, basal-like
and metaplastic breast carcinomas, and head and neck
cancer. Its functions include effects on the apoptotic
pathway and on metastasis. Phosphorylation of HspB5
reduces its oligomerization and anti-apoptotic
activities. HspB5 is protective in demyelinating
disease such as multiple sclerosis (MS), being a
negative regulator of inflammation. In early active MS
lesions it is the most abundant gene transcript and an
autoantigen, the immune response against it would
disrupt its function and worsen inflammation and
demyelination. Given as therapy for ongoing
demyelinating disease it may counteract this effect.
It is an autoantigen in the pathogenesis of various
other inflammatory disorders including Lens-associated
uveitis (LAU), and Behcet's disease. Mutations in HspB5
have been associated with diseases including dominant
cataract and desmin-related myopathy.
Length = 84
Score = 32.3 bits (73), Expect = 0.012
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 22 DLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMD 81
D+ EE+KV+V D ++I G+ E++ D + R F R++R+P +V
Sbjct: 14 DVKHFSPEELKVKVLGD-FIEIHGKH----EERQDEHGFISRE---FQRKYRIPADVDPL 65
Query: 82 QIKASMES-GVLTVTVPK 98
I +S+ GVLTV P+
Sbjct: 66 TITSSLSPDGVLTVCGPR 83
>gnl|CDD|107236 cd06481, ACD_HspB9_like, Alpha crystallin domain (ACD) found in
mammalian small heat shock protein (sHsp) HspB9 and
similar proteins. sHsps are molecular chaperones that
suppress protein aggregation and protect against cell
stress, and are generally active as large oligomers
consisting of multiple subunits. Human (h) HspB9 is
expressed exclusively in the normal testis and in
various tumor samples and is a cancer/testis antigen.
hHspB9 interacts with TCTEL1 (T-complex testis
expressed protein -1), a subunit of dynein. hHspB9 and
TCTEL1 are co-expressed in similar cells within the
testis and in tumor cells. Included in this group is
Xenopus Hsp30, a developmentally-regulated
heat-inducible molecular chaperone.
Length = 87
Score = 30.8 bits (70), Expect = 0.041
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 20 KTDLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKNDTWHRVERSSGMFSRRFRLPENVK 79
K D+ G E++ V V D R L ++G+R + ED+ ++ + F R +LPE+V
Sbjct: 12 KLDVRGFSPEDLSVRV-DGRKLVVTGKREKKNEDEKGSFSYEYQE---FVREAQLPEHVD 67
Query: 80 MDQIKASM-ESGVLTVTVP 97
+ + S+ SG L + P
Sbjct: 68 PEAVTCSLSPSGHLHIRAP 86
>gnl|CDD|184118 PRK13531, PRK13531, regulatory ATPase RavA; Provisional.
Length = 498
Score = 31.1 bits (71), Expect = 0.085
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 39 RVLQISGQRNIEKEDKND-TWHRVERSSGMFSRR--FRLPENVKMDQI 83
R+ I +R ++ ++D T V + GMFSR+ ++LP N+ +
Sbjct: 315 RLGAIVQRRLQLQQQQSDKTALTVIKQGGMFSRKPHYQLPVNLTASTL 362
>gnl|CDD|225463 COG2911, COG2911, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 1278
Score = 28.5 bits (64), Expect = 0.77
Identities = 9/48 (18%), Positives = 16/48 (33%)
Query: 23 LPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKNDTWHRVERSSGMFSR 70
LPGL E+V + +L + D+ ++S
Sbjct: 50 LPGLDIEKVSGSLRGGLLLGDVRYDRLGVADRAGQLLLALDLRCLWSP 97
>gnl|CDD|220926 pfam10988, DUF2807, Protein of unknown function (DUF2807). This
bacterial family of proteins shows structural similarity
to other pectin lyase families. Although structures from
this family align with acetyl-transferases, there is no
conservation of catalytic residues found. It is likely
that the function is one of cell-adhesion. In PDB:3jx8,
it is interesting to note that the sequence of contains
several well defined sequence repeats, centred around
GSG motifs defining the tight beta turn between the two
sheets of the super-helix; there are 8 such repeats in
the C-terminal half of the protein, which could be
grouped into 4 repeats of two. It seems likely that this
family belongs to the superfamily of trimeric
autotransporter adhesins (TAAs), which are important
virulence factors in Gram-negative pathogens. In the
case of Parabacteroides distasonis, which is a cmoponent
of the normal distal human gut microbiota, TAA-like
complexes probably modulate adherence to the host
(information derived from TOPSAN).
Length = 181
Score = 27.5 bits (62), Expect = 1.3
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 10/48 (20%)
Query: 75 PENVKMDQIKASMESGVLTVTVPK---------VEVTKPDVKAIEISG 113
EN+ +D+I+ ++ G L + + K V VT P+++ I +SG
Sbjct: 28 DENL-LDKIETEVKGGTLKIRLKKGIRNGKNIKVTVTYPNLEEISLSG 74
>gnl|CDD|107237 cd06482, ACD_HspB10, Alpha crystallin domain (ACD) found in
mammalian small heat shock protein (sHsp) HspB10, also
known as sperm outer dense fiber protein (ODFP), and
similar proteins. sHsps are molecular chaperones that
suppress protein aggregation and protect against cell
stress, and are generally active as large oligomers
consisting of multiple subunits. Human (h) HspB10 occurs
exclusively in the axoneme of sperm cells and may have a
cytoskeletal role.
Length = 87
Score = 26.8 bits (59), Expect = 1.4
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 9/79 (11%)
Query: 22 DLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMD 81
D+ G ++VKV+V+D +V Q+S E+E++ D + S + F LP V
Sbjct: 15 DVCGFEPDQVKVKVKDGKV-QVSA----ERENRYDCLGSKKYSYMNICKEFSLPPGVDEK 69
Query: 82 QIKASMESGVLTVTVPKVE 100
+ S G +V K+E
Sbjct: 70 DVTYSYGLG----SVVKIE 84
>gnl|CDD|226085 COG3555, COG3555, Aspartyl/asparaginyl beta-hydroxylase and related
dioxygenases [Posttranslational modification, protein
turnover, chaperones].
Length = 291
Score = 27.1 bits (60), Expect = 2.0
Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 13/70 (18%)
Query: 1 MWLI------PNFINLTETPEAHVFKTDLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDK 54
M+ P F ++ PE +T+ +R E + + L +G+ N +
Sbjct: 41 MYAASLLPSGPYFDDVDTFPELATIRTNWQDIRDEALALL---LGGLIRAGEINWHQAGF 97
Query: 55 NDT----WHR 60
N W R
Sbjct: 98 NSFFDLLWKR 107
>gnl|CDD|183223 PRK11597, PRK11597, heat shock chaperone IbpB; Provisional.
Length = 142
Score = 26.6 bits (59), Expect = 2.1
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 23 LPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQ 82
L G R+E++ +++E R L + G E+ +K W + FS F L EN+++
Sbjct: 51 LAGFRQEDLDIQLEGTR-LTVKG--TPEQPEKEVKWLHQGLVNQPFSLSFTLAENMEVSG 107
Query: 83 IKASMESGVL 92
A+ +G+L
Sbjct: 108 --ATFVNGLL 115
>gnl|CDD|176810 cd08976, BaFpgNei_N_4, Uncharacterized bacterial subgroup of the
N-terminal domain of Fpg (formamidopyrimidine-DNA
glycosylase, MutM)_Nei (endonuclease VIII)
base-excision repair DNA glycosylases. This family is
an uncharacterized bacterial subgroup of the FpgNei_N
domain superfamily. DNA glycosylases maintain genome
integrity by recognizing base lesions created by
ionizing radiation, alkylating or oxidizing agents, and
endogenous reactive oxygen species. They initiate the
base-excision repair process, which is completed with
the help of enzymes such as phosphodiesterases, AP
endonucleases, DNA polymerases and DNA ligases. DNA
glycosylases cleave the N-glycosyl bond between the
sugar and the damaged base, creating an AP
(apurinic/apyrimidinic) site. Most FpgNei DNA
glycosylases use their N-terminal proline residue as
the key catalytic nucleophile, and the reaction
proceeds via a Schiff base intermediate. This
N-terminal proline is conserved in this family.
Escherichia coli Fpg prefers 8-oxo-7,8-dihydroguanine
(8-oxoG) and oxidized purines and Escherichia coli Nei
recognizes oxidized pyrimidines. However, neither
Escherichia coli Fpg or Nei belong to this family. In
addition to this BaFpgNei_N_4 domain, most enzymes
belonging to this family contain a helix-two turn-helix
(H2TH) domain and a zinc-finger motif.
Length = 117
Score = 26.5 bits (59), Expect = 2.4
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 12 ETPEAHVFKTDLPG--LRKEEVKVEVEDDRVLQ 42
E PE V K L L ++ V+VEV DD++L
Sbjct: 2 ELPEVEVQKQYLERTSLHRKIVEVEVGDDKILG 34
>gnl|CDD|200521 cd11260, Sema_4E, The Sema domain, a protein interacting module, of
semaphorin 4E (Sema4E). Sema4E is expressed in the
epithelial cells that line the pharyngeal arches in
zebrafish. It may act as a guidance molecule to restrict
the branchiomotor axons to the mesenchymal cells.
Gain-of-function and loss-of-function studies
demonstrate that Sema4E is essential for the guidance of
facial axons from the hindbrain into their pharyngeal
arch targets and is sufficient for guidance of gill
motor axons. Sema4E guides facial motor axons by a
repulsive action. Sema4E belongs to the class 4
transmembrane semaphorin family of proteins. Semaphorins
are regulatory molecules involved in the development of
the nervous system and in axonal guidance. They also
play important roles in other biological processes, such
as angiogenesis, immune regulation, respiration systems
and cancer. The Sema domain is located at the N-terminus
and contains four disulfide bonds formed by eight
conserved cysteine residues. It serves as a
receptor-recognition and -binding module.
Length = 456
Score = 26.8 bits (59), Expect = 2.5
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 59 HRVERSSGMFSR-RFRLPENVKMDQIKASMESGVLTVTVP 97
+ V S +FSR +F+ P V+ +K M SG L V P
Sbjct: 287 YNVTDISNVFSRGKFKTPVAVETSFVKWVMYSGELPVPRP 326
>gnl|CDD|172158 PRK13589, PRK13589, flagellin; Provisional.
Length = 576
Score = 26.9 bits (59), Expect = 2.9
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 80 MDQIKASMES--GVLTVTVPKVEVTKPDVKAIE 110
+DQI+A + S L VT+ + VT+ +VKA E
Sbjct: 500 LDQIRADIGSVQNQLQVTINNITVTQVNVKAAE 532
>gnl|CDD|225191 COG2309, AmpS, Leucyl aminopeptidase (aminopeptidase T) [Amino acid
transport and metabolism].
Length = 385
Score = 25.7 bits (57), Expect = 5.7
Identities = 7/25 (28%), Positives = 15/25 (60%)
Query: 24 PGLRKEEVKVEVEDDRVLQISGQRN 48
G E +++ ED +V++IS ++
Sbjct: 252 QGTLIEGIRLTFEDGKVVEISAEKG 276
>gnl|CDD|236963 PRK11720, PRK11720, galactose-1-phosphate uridylyltransferase;
Provisional.
Length = 346
Score = 25.6 bits (57), Expect = 5.7
Identities = 7/36 (19%), Positives = 11/36 (30%)
Query: 14 PEAHVFKTDLPGLRKEEVKVEVEDDRVLQISGQRNI 49
+VF D L + DD + + R
Sbjct: 70 TGTYVFTNDFAALMPDTPDAPESDDPLFRCQSARGT 105
>gnl|CDD|182353 PRK10280, PRK10280, dipeptidyl carboxypeptidase II; Provisional.
Length = 681
Score = 25.9 bits (57), Expect = 5.8
Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 14/62 (22%)
Query: 2 WLIPNFINLTETPEAHVFKTDLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKNDTWHRV 61
WLIP +N T+ P L LR + + L +G EK D NDT +
Sbjct: 217 WLIP-LLNTTQQPA-------LAELRDRQTR------ENLFAAGWTRAEKGDANDTRAII 262
Query: 62 ER 63
+R
Sbjct: 263 QR 264
>gnl|CDD|235496 PRK05518, rpl6p, 50S ribosomal protein L6P; Reviewed.
Length = 180
Score = 25.6 bits (57), Expect = 6.4
Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 9/45 (20%)
Query: 67 MFSRRFRLPENVKMDQIKASMESGVLTVTVPKVEVTK----PDVK 107
+PE V +E V+TV PK E+T+ P V
Sbjct: 5 YIREEIEIPEGVT-----VEIEGLVVTVKGPKGELTRDFWYPGVT 44
>gnl|CDD|215301 PLN02546, PLN02546, glutathione reductase.
Length = 558
Score = 25.6 bits (56), Expect = 6.7
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 85 ASMESGVLTVTVPKVEVTKPDVKAI 109
A ME G L T+ E TKPD +A+
Sbjct: 399 ALMEGGALAKTLFGNEPTKPDYRAV 423
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.132 0.375
Gapped
Lambda K H
0.267 0.0771 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,692,482
Number of extensions: 481152
Number of successful extensions: 404
Number of sequences better than 10.0: 1
Number of HSP's gapped: 390
Number of HSP's successfully gapped: 48
Length of query: 113
Length of database: 10,937,602
Length adjustment: 77
Effective length of query: 36
Effective length of database: 7,522,344
Effective search space: 270804384
Effective search space used: 270804384
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (24.1 bits)