BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033690
         (113 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3THO|A Chain A, Crystal Structure Of Mre11:rad50 In Its AtpADP BOUND STATE
          Length = 382

 Score = 26.2 bits (56), Expect = 5.1,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 20/38 (52%)

Query: 3   GLTASEVAGFGVGTVLLCATIAAPKLDAFFSASQRSSL 40
           GL+  E A   +   +  A +A+ +LDAFF     SSL
Sbjct: 296 GLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSL 333


>pdb|3QF7|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
           Clamp In Dna Double-Strand Break Repair
 pdb|3QF7|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
           Clamp In Dna Double-Strand Break Repair
          Length = 365

 Score = 26.2 bits (56), Expect = 5.1,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 20/38 (52%)

Query: 3   GLTASEVAGFGVGTVLLCATIAAPKLDAFFSASQRSSL 40
           GL+  E A   +   +  A +A+ +LDAFF     SSL
Sbjct: 279 GLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSL 316


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.138    0.442 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,157,780
Number of Sequences: 62578
Number of extensions: 107199
Number of successful extensions: 247
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 245
Number of HSP's gapped (non-prelim): 3
length of query: 113
length of database: 14,973,337
effective HSP length: 77
effective length of query: 36
effective length of database: 10,154,831
effective search space: 365573916
effective search space used: 365573916
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)