Query 033690
Match_columns 113
No_of_seqs 31 out of 33
Neff 2.9
Searched_HMMs 46136
Date Fri Mar 29 05:10:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033690.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033690hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03165 chaperone protein dna 98.6 1.1E-07 2.4E-12 69.1 5.2 88 4-110 3-95 (111)
2 PF00684 DnaJ_CXXCXGXG: DnaJ c 98.3 6.8E-07 1.5E-11 57.9 3.7 54 43-109 1-64 (66)
3 PRK14280 chaperone protein Dna 97.9 1.3E-05 2.8E-10 66.3 3.6 57 41-110 144-209 (376)
4 PRK14282 chaperone protein Dna 97.9 1.2E-05 2.7E-10 66.1 3.3 57 41-110 153-218 (369)
5 TIGR02349 DnaJ_bact chaperone 97.8 1.4E-05 3.1E-10 64.9 3.4 57 41-110 144-209 (354)
6 PRK14298 chaperone protein Dna 97.8 1.9E-05 4.2E-10 65.5 3.3 57 41-110 142-207 (377)
7 COG0484 DnaJ DnaJ-class molecu 97.8 1.8E-05 3.9E-10 67.4 3.2 54 41-110 143-206 (371)
8 PRK14276 chaperone protein Dna 97.7 2.3E-05 5E-10 64.9 3.3 57 41-110 147-212 (380)
9 PRK14296 chaperone protein Dna 97.7 2.6E-05 5.5E-10 64.7 3.5 57 41-110 150-215 (372)
10 PRK14285 chaperone protein Dna 97.7 4.1E-05 9E-10 63.2 3.9 53 41-110 147-208 (365)
11 PRK14297 chaperone protein Dna 97.7 3.5E-05 7.7E-10 63.7 3.4 57 41-110 149-214 (380)
12 PRK14287 chaperone protein Dna 97.7 3.7E-05 8.1E-10 63.6 3.3 56 41-109 139-203 (371)
13 PRK14278 chaperone protein Dna 97.6 4.9E-05 1.1E-09 63.0 3.7 57 41-110 140-205 (378)
14 PRK14277 chaperone protein Dna 97.6 5E-05 1.1E-09 63.0 3.4 57 41-110 156-221 (386)
15 PRK10767 chaperone protein Dna 97.6 6.2E-05 1.3E-09 61.8 3.7 53 41-110 143-204 (371)
16 PTZ00037 DnaJ_C chaperone prot 97.6 5.3E-05 1.1E-09 64.4 3.2 58 41-111 151-218 (421)
17 PRK14281 chaperone protein Dna 97.5 6.4E-05 1.4E-09 62.7 3.3 57 41-110 164-228 (397)
18 PRK14295 chaperone protein Dna 97.5 6.5E-05 1.4E-09 62.6 3.3 53 41-110 167-228 (389)
19 PRK14283 chaperone protein Dna 97.5 6.1E-05 1.3E-09 62.2 3.1 58 41-111 147-213 (378)
20 PRK14284 chaperone protein Dna 97.5 8.3E-05 1.8E-09 61.8 3.8 54 40-110 158-220 (391)
21 PRK14301 chaperone protein Dna 97.5 7.2E-05 1.6E-09 61.9 3.3 53 41-110 145-206 (373)
22 PRK14289 chaperone protein Dna 97.5 6.9E-05 1.5E-09 61.9 3.1 59 40-111 154-221 (386)
23 PRK14291 chaperone protein Dna 97.5 6.9E-05 1.5E-09 62.1 3.0 54 41-111 157-218 (382)
24 PRK14286 chaperone protein Dna 97.5 9.6E-05 2.1E-09 61.2 3.7 53 41-110 151-212 (372)
25 PRK14300 chaperone protein Dna 97.5 0.0001 2.3E-09 60.9 3.7 53 41-110 146-207 (372)
26 PRK14294 chaperone protein Dna 97.5 0.00011 2.4E-09 60.5 3.5 54 41-111 145-207 (366)
27 PRK14279 chaperone protein Dna 97.4 0.00012 2.5E-09 61.2 3.4 53 41-110 174-235 (392)
28 PRK14288 chaperone protein Dna 97.4 0.00012 2.7E-09 60.5 3.4 53 41-110 141-201 (369)
29 PRK14290 chaperone protein Dna 97.4 9.4E-05 2E-09 60.9 2.7 58 41-111 150-215 (365)
30 PRK14293 chaperone protein Dna 97.4 0.00014 2.9E-09 60.1 3.3 58 41-111 144-210 (374)
31 COG1107 Archaea-specific RecJ- 97.4 0.00013 2.7E-09 66.6 3.2 65 41-110 3-77 (715)
32 PRK14292 chaperone protein Dna 97.3 0.00022 4.8E-09 58.6 3.3 57 41-110 140-206 (371)
33 KOG2824 Glutaredoxin-related p 97.2 0.00057 1.2E-08 57.0 5.2 56 37-109 226-281 (281)
34 PF00684 DnaJ_CXXCXGXG: DnaJ c 96.7 0.0015 3.3E-08 42.2 2.9 39 38-100 13-66 (66)
35 cd03031 GRX_GRX_like Glutaredo 96.5 0.0039 8.4E-08 46.6 4.2 50 39-104 98-147 (147)
36 PRK14290 chaperone protein Dna 95.8 0.0084 1.8E-07 49.5 3.3 39 39-102 164-217 (365)
37 PRK10767 chaperone protein Dna 95.8 0.0088 1.9E-07 49.3 3.3 38 40-102 159-207 (371)
38 PRK14288 chaperone protein Dna 95.8 0.0096 2.1E-07 49.4 3.4 39 39-102 155-204 (369)
39 KOG2813 Predicted molecular ch 95.8 0.0096 2.1E-07 51.7 3.4 23 41-63 188-210 (406)
40 PLN03165 chaperone protein dna 95.7 0.008 1.7E-07 43.8 2.5 36 39-75 74-109 (111)
41 PRK14286 chaperone protein Dna 95.7 0.01 2.2E-07 49.4 3.2 38 40-102 167-215 (372)
42 PRK14300 chaperone protein Dna 95.7 0.0098 2.1E-07 49.3 3.1 38 40-102 162-210 (372)
43 COG0484 DnaJ DnaJ-class molecu 95.6 0.011 2.4E-07 50.6 3.4 12 39-50 158-169 (371)
44 PRK14298 chaperone protein Dna 95.6 0.0094 2E-07 49.7 2.9 39 39-102 157-210 (377)
45 PRK14285 chaperone protein Dna 95.5 0.012 2.6E-07 48.8 3.0 39 39-102 162-211 (365)
46 PRK14282 chaperone protein Dna 95.4 0.014 3E-07 48.3 3.2 39 39-102 168-221 (369)
47 PRK14284 chaperone protein Dna 95.4 0.011 2.4E-07 49.3 2.6 39 39-102 174-223 (391)
48 PRK14296 chaperone protein Dna 95.4 0.013 2.9E-07 48.7 3.0 39 39-102 165-218 (372)
49 PRK14301 chaperone protein Dna 95.4 0.013 2.9E-07 48.7 3.0 40 38-102 159-209 (373)
50 TIGR02642 phage_xxxx uncharact 95.4 0.01 2.2E-07 46.5 2.1 28 40-67 99-131 (186)
51 PRK14294 chaperone protein Dna 95.4 0.015 3.3E-07 48.0 3.2 39 39-102 160-209 (366)
52 PRK14280 chaperone protein Dna 95.2 0.016 3.6E-07 48.1 3.0 26 39-64 159-199 (376)
53 PRK14277 chaperone protein Dna 95.2 0.017 3.8E-07 48.1 3.1 38 40-102 172-224 (386)
54 PRK14279 chaperone protein Dna 95.2 0.018 3.9E-07 48.2 3.2 39 39-102 189-238 (392)
55 PRK14276 chaperone protein Dna 95.2 0.017 3.8E-07 48.0 3.0 39 39-102 162-215 (380)
56 TIGR02349 DnaJ_bact chaperone 95.2 0.018 3.8E-07 47.0 2.9 38 40-102 160-212 (354)
57 PTZ00037 DnaJ_C chaperone prot 95.2 0.018 3.9E-07 49.2 3.1 41 39-102 165-220 (421)
58 PRK14295 chaperone protein Dna 95.1 0.023 4.9E-07 47.6 3.4 40 38-102 181-231 (389)
59 PRK14278 chaperone protein Dna 95.1 0.021 4.5E-07 47.6 3.1 39 39-102 155-208 (378)
60 PRK14297 chaperone protein Dna 95.0 0.02 4.4E-07 47.5 3.0 25 40-64 165-204 (380)
61 PRK14281 chaperone protein Dna 94.8 0.027 5.9E-07 47.2 3.3 39 39-102 178-231 (397)
62 PRK14289 chaperone protein Dna 94.8 0.024 5.2E-07 47.0 2.8 26 39-64 170-210 (386)
63 PRK14291 chaperone protein Dna 94.6 0.03 6.6E-07 46.6 3.1 38 39-102 172-220 (382)
64 PRK14293 chaperone protein Dna 94.6 0.03 6.5E-07 46.4 3.0 24 40-63 160-198 (374)
65 PRK14283 chaperone protein Dna 94.3 0.039 8.5E-07 45.8 2.9 24 40-63 163-201 (378)
66 TIGR02642 phage_xxxx uncharact 93.9 0.038 8.2E-07 43.3 2.1 15 51-65 99-113 (186)
67 PRK14287 chaperone protein Dna 93.4 0.068 1.5E-06 44.4 2.8 26 39-64 154-194 (371)
68 PRK14292 chaperone protein Dna 93.4 0.072 1.6E-06 43.9 2.9 38 40-102 157-209 (371)
69 PRK00349 uvrA excinuclease ABC 93.1 0.051 1.1E-06 50.9 1.9 34 52-101 739-772 (943)
70 TIGR00630 uvra excinuclease AB 93.1 0.055 1.2E-06 50.6 2.0 33 53-101 738-770 (924)
71 KOG2813 Predicted molecular ch 93.1 0.082 1.8E-06 46.1 2.9 60 38-109 196-264 (406)
72 KOG0712 Molecular chaperone (D 91.9 0.14 3.1E-06 43.6 2.8 58 41-110 128-195 (337)
73 PRK00635 excinuclease ABC subu 89.6 0.2 4.4E-06 50.3 2.0 34 52-101 1608-1641(1809)
74 COG1107 Archaea-specific RecJ- 89.5 0.19 4.2E-06 46.5 1.7 38 23-65 41-82 (715)
75 PF07092 DUF1356: Protein of u 86.0 0.43 9.3E-06 39.1 1.5 40 27-66 11-53 (238)
76 PF13719 zinc_ribbon_5: zinc-r 84.6 0.82 1.8E-05 27.0 1.9 16 51-66 2-17 (37)
77 KOG2907 RNA polymerase I trans 83.5 0.63 1.4E-05 34.9 1.3 73 39-111 6-112 (116)
78 PF07754 DUF1610: Domain of un 82.8 0.87 1.9E-05 25.6 1.4 10 100-109 15-24 (24)
79 TIGR01384 TFS_arch transcripti 82.2 2.8 6.1E-05 28.5 4.1 22 42-63 2-28 (104)
80 PF07092 DUF1356: Protein of u 81.7 0.66 1.4E-05 38.0 1.0 16 88-103 36-51 (238)
81 PF13717 zinc_ribbon_4: zinc-r 81.3 1.4 3E-05 26.0 2.0 32 51-98 2-33 (36)
82 TIGR02098 MJ0042_CXXC MJ0042 f 74.7 3.1 6.7E-05 23.8 2.1 16 51-66 2-17 (38)
83 PF08792 A2L_zn_ribbon: A2L zi 73.7 2.8 6.1E-05 24.6 1.8 7 103-109 23-29 (33)
84 COG0178 UvrA Excinuclease ATPa 73.6 2.2 4.7E-05 41.0 2.0 34 52-101 731-764 (935)
85 TIGR00630 uvra excinuclease AB 68.6 3.3 7.1E-05 39.2 2.0 29 36-64 732-772 (924)
86 PF03811 Zn_Tnp_IS1: InsA N-te 67.4 6.9 0.00015 23.4 2.6 19 51-69 5-23 (36)
87 PRK14892 putative transcriptio 66.7 5.1 0.00011 28.7 2.2 24 86-109 17-50 (99)
88 TIGR03096 nitroso_cyanin nitro 62.0 3.8 8.2E-05 30.9 0.9 24 4-27 2-25 (135)
89 TIGR00595 priA primosomal prot 62.0 9.6 0.00021 33.1 3.5 46 41-109 214-261 (505)
90 PF14353 CpXC: CpXC protein 61.9 3 6.5E-05 29.3 0.3 49 52-102 2-50 (128)
91 PRK03564 formate dehydrogenase 61.1 15 0.00032 31.0 4.3 90 7-98 154-260 (309)
92 PRK00349 uvrA excinuclease ABC 61.0 5.2 0.00011 38.0 1.8 30 36-65 734-775 (943)
93 PHA00626 hypothetical protein 60.6 6.5 0.00014 26.6 1.7 20 90-109 11-31 (59)
94 PRK04023 DNA polymerase II lar 60.5 8.6 0.00019 37.8 3.1 46 40-111 626-673 (1121)
95 TIGR01562 FdhE formate dehydro 60.3 13 0.00029 31.1 3.9 87 9-98 153-260 (305)
96 PRK00432 30S ribosomal protein 58.6 5.1 0.00011 25.3 0.9 19 90-108 20-44 (50)
97 PRK14559 putative protein seri 58.5 6.9 0.00015 35.8 2.0 20 92-111 29-51 (645)
98 PRK07220 DNA topoisomerase I; 57.1 15 0.00033 33.6 4.0 18 91-108 636-664 (740)
99 PF06524 NOA36: NOA36 protein; 55.0 5.3 0.00012 34.2 0.7 45 41-97 172-216 (314)
100 PRK00398 rpoP DNA-directed RNA 54.8 12 0.00026 22.4 2.1 8 90-97 21-28 (46)
101 PRK14873 primosome assembly pr 53.9 18 0.0004 33.0 4.0 49 39-110 382-431 (665)
102 PF14205 Cys_rich_KTR: Cystein 51.4 9.2 0.0002 25.5 1.3 12 41-52 5-16 (55)
103 COG3677 Transposase and inacti 51.3 11 0.00025 27.6 1.9 31 29-68 17-47 (129)
104 PF08271 TF_Zn_Ribbon: TFIIB z 51.2 9.9 0.00021 22.5 1.3 10 99-108 17-26 (43)
105 TIGR00100 hypA hydrogenase nic 51.0 11 0.00025 26.8 1.8 22 89-110 69-95 (115)
106 PF04438 zf-HIT: HIT zinc fing 50.3 10 0.00022 21.8 1.2 20 91-110 3-22 (30)
107 PF08646 Rep_fac-A_C: Replicat 50.1 9 0.00019 27.3 1.2 21 90-110 18-46 (146)
108 PRK12380 hydrogenase nickel in 50.1 13 0.00027 26.6 1.9 24 87-110 67-95 (113)
109 PRK14714 DNA polymerase II lar 48.7 16 0.00036 36.6 3.0 45 41-111 668-719 (1337)
110 PRK00762 hypA hydrogenase nick 48.6 10 0.00022 27.4 1.3 21 88-109 68-100 (124)
111 KOG4216 Steroid hormone nuclea 48.3 8.4 0.00018 34.7 0.9 23 41-63 47-75 (479)
112 PRK00564 hypA hydrogenase nick 47.5 11 0.00023 27.0 1.2 22 88-109 69-96 (117)
113 cd04476 RPA1_DBD_C RPA1_DBD_C: 47.0 12 0.00026 27.2 1.4 20 91-110 35-60 (166)
114 PRK03681 hypA hydrogenase nick 45.7 14 0.00031 26.3 1.7 25 86-110 66-96 (114)
115 KOG0712 Molecular chaperone (D 45.6 8.9 0.00019 32.9 0.7 28 42-69 172-204 (337)
116 PRK03824 hypA hydrogenase nick 45.3 14 0.00031 27.0 1.6 10 89-98 69-78 (135)
117 PRK00488 pheS phenylalanyl-tRN 45.2 12 0.00026 31.9 1.3 25 41-68 261-285 (339)
118 cd00296 SIR2 SIR2 superfamily 44.7 12 0.00026 27.9 1.1 36 74-109 90-142 (222)
119 PRK14559 putative protein seri 44.0 19 0.00042 32.9 2.6 20 91-110 16-36 (645)
120 cd01411 SIR2H SIR2H: Uncharact 43.9 18 0.00038 28.1 2.0 36 74-109 97-144 (225)
121 smart00778 Prim_Zn_Ribbon Zinc 43.6 13 0.00028 22.5 1.0 15 90-104 3-17 (37)
122 PRK11712 ribonuclease G; Provi 42.9 5.2 0.00011 35.4 -1.2 28 52-79 403-430 (489)
123 TIGR00155 pqiA_fam integral me 42.0 21 0.00046 30.5 2.4 24 87-110 212-239 (403)
124 PRK00420 hypothetical protein; 41.9 18 0.00038 26.6 1.6 24 89-112 22-51 (112)
125 PF05123 S_layer_N: S-layer li 41.6 9.4 0.0002 32.1 0.2 24 9-32 3-34 (290)
126 PF13248 zf-ribbon_3: zinc-rib 40.7 14 0.0003 20.1 0.8 20 91-110 3-25 (26)
127 PF08273 Prim_Zn_Ribbon: Zinc- 40.4 17 0.00037 22.3 1.2 15 89-103 2-16 (40)
128 KOG4846 Nuclear receptor [Sign 40.3 12 0.00026 34.0 0.7 23 41-63 133-163 (538)
129 PF01155 HypA: Hydrogenase exp 40.1 14 0.0003 26.1 0.9 23 88-110 68-95 (113)
130 PF08274 PhnA_Zn_Ribbon: PhnA 39.7 18 0.00038 21.1 1.1 17 92-108 4-26 (30)
131 PRK05580 primosome assembly pr 39.5 35 0.00075 30.8 3.4 48 40-110 381-430 (679)
132 COG1998 RPS31 Ribosomal protei 39.5 19 0.00041 23.7 1.3 24 37-60 16-46 (51)
133 TIGR00373 conserved hypothetic 39.3 18 0.00039 27.1 1.4 24 86-109 105-136 (158)
134 PF04236 Transp_Tc5_C: Tc5 tra 38.9 22 0.00048 23.6 1.6 24 37-60 24-49 (63)
135 PF00096 zf-C2H2: Zinc finger, 38.7 12 0.00026 18.8 0.2 9 102-110 1-9 (23)
136 smart00834 CxxC_CXXC_SSSS Puta 38.1 29 0.00063 19.5 1.9 10 89-98 25-34 (41)
137 PF14599 zinc_ribbon_6: Zinc-r 38.0 19 0.00042 23.8 1.2 20 89-108 29-55 (61)
138 PRK14811 formamidopyrimidine-D 37.7 23 0.0005 28.5 1.8 15 98-112 252-266 (269)
139 PRK11827 hypothetical protein; 37.4 15 0.00033 24.3 0.7 12 49-60 6-17 (60)
140 COG3809 Uncharacterized protei 37.2 22 0.00048 25.6 1.5 20 41-60 2-30 (88)
141 COG1530 CafA Ribonucleases G a 37.0 19 0.00041 31.6 1.3 25 49-73 393-417 (487)
142 COG4023 SBH1 Preprotein transl 36.9 23 0.00051 23.7 1.5 18 9-26 39-56 (57)
143 PF07295 DUF1451: Protein of u 36.2 34 0.00074 25.8 2.5 11 90-100 130-140 (146)
144 TIGR00757 RNaseEG ribonuclease 35.6 18 0.00039 31.2 1.0 18 52-69 391-408 (414)
145 PRK14973 DNA topoisomerase I; 35.5 42 0.00091 32.1 3.4 19 91-109 636-665 (936)
146 PF13824 zf-Mss51: Zinc-finger 34.9 23 0.0005 23.3 1.2 17 93-109 2-22 (55)
147 TIGR03655 anti_R_Lar restricti 34.8 34 0.00074 21.1 1.9 13 90-102 26-38 (53)
148 PF01753 zf-MYND: MYND finger; 34.1 29 0.00063 19.7 1.4 18 43-60 1-18 (37)
149 PTZ00408 NAD-dependent deacety 33.4 29 0.00064 27.5 1.8 35 74-108 96-144 (242)
150 PF12760 Zn_Tnp_IS1595: Transp 33.3 35 0.00075 20.5 1.7 10 100-109 36-45 (46)
151 COG1571 Predicted DNA-binding 33.2 23 0.00049 31.4 1.3 19 92-110 352-376 (421)
152 COG1198 PriA Primosomal protei 33.1 56 0.0012 30.7 3.8 49 39-110 434-484 (730)
153 smart00659 RPOLCX RNA polymera 33.0 33 0.00071 21.1 1.6 10 90-99 19-28 (44)
154 PRK06921 hypothetical protein; 32.7 23 0.0005 28.2 1.1 17 49-65 30-46 (266)
155 PRK00481 NAD-dependent deacety 32.2 30 0.00065 26.9 1.6 6 104-109 145-150 (242)
156 COG2995 PqiA Uncharacterized p 32.1 30 0.00066 30.8 1.8 36 75-110 205-244 (418)
157 COG2863 Cytochrome c553 [Energ 32.0 33 0.00072 25.6 1.8 35 13-49 7-41 (121)
158 PF00098 zf-CCHC: Zinc knuckle 31.9 27 0.00058 17.9 0.9 13 91-103 1-13 (18)
159 COG5151 SSL1 RNA polymerase II 31.7 20 0.00044 31.7 0.7 26 85-110 357-397 (421)
160 cd03031 GRX_GRX_like Glutaredo 31.6 33 0.00071 25.6 1.7 20 90-109 99-118 (147)
161 KOG0477 DNA replication licens 31.4 20 0.00044 34.3 0.7 19 85-103 310-328 (854)
162 PRK12366 replication factor A; 31.0 28 0.00061 31.4 1.5 20 91-110 533-557 (637)
163 PRK06266 transcription initiat 30.8 29 0.00063 26.6 1.3 25 86-110 113-145 (178)
164 KOG4431 Uncharacterized protei 29.3 30 0.00064 25.3 1.1 14 11-24 71-84 (100)
165 PRK11032 hypothetical protein; 29.1 50 0.0011 25.5 2.4 10 90-99 142-151 (160)
166 cd01412 SIRT5_Af1_CobB SIRT5_A 28.6 36 0.00077 25.9 1.5 35 75-109 89-138 (224)
167 PF10497 zf-4CXXC_R1: Zinc-fin 28.4 21 0.00045 25.4 0.2 19 87-107 58-76 (105)
168 COG4888 Uncharacterized Zn rib 27.6 49 0.0011 24.5 2.0 23 41-70 23-45 (104)
169 PRK14138 NAD-dependent deacety 27.4 46 0.001 26.2 2.0 36 74-109 98-151 (244)
170 smart00531 TFIIE Transcription 26.5 35 0.00075 24.9 1.1 11 100-110 122-132 (147)
171 CHL00183 petJ cytochrome c553; 26.4 34 0.00074 23.1 0.9 40 9-49 4-43 (108)
172 PRK00635 excinuclease ABC subu 26.1 39 0.00084 34.8 1.6 31 35-65 1602-1644(1809)
173 PF02022 Integrase_Zn: Integra 25.9 20 0.00043 21.9 -0.3 11 90-100 30-40 (40)
174 PF13453 zf-TFIIB: Transcripti 25.6 58 0.0013 19.0 1.8 9 90-98 19-27 (41)
175 PF13894 zf-C2H2_4: C2H2-type 25.4 37 0.0008 16.2 0.8 9 102-110 1-9 (24)
176 KOG2822 Sphingoid base-phospha 25.4 30 0.00065 30.7 0.7 32 9-40 219-251 (407)
177 PRK06835 DNA replication prote 25.2 30 0.00066 28.7 0.6 11 53-63 100-110 (329)
178 PRK15103 paraquat-inducible me 24.7 68 0.0015 27.7 2.6 26 85-110 216-244 (419)
179 PRK01103 formamidopyrimidine/5 24.6 51 0.0011 26.3 1.8 18 92-109 247-273 (274)
180 PF13134 DUF3948: Protein of u 24.3 43 0.00092 20.6 1.0 20 4-23 9-28 (35)
181 PF13901 DUF4206: Domain of un 24.1 25 0.00055 27.1 -0.0 19 91-110 143-161 (202)
182 KOG2593 Transcription initiati 23.6 42 0.00091 30.1 1.2 25 85-109 123-161 (436)
183 PRK05333 NAD-dependent deacety 23.0 60 0.0013 26.1 1.9 24 74-97 107-135 (285)
184 PRK14704 anaerobic ribonucleos 22.8 53 0.0012 29.9 1.7 26 86-111 555-582 (618)
185 PF11240 DUF3042: Protein of u 22.8 44 0.00095 22.0 0.9 17 9-25 5-21 (54)
186 PHA02998 RNA polymerase subuni 22.4 70 0.0015 26.0 2.2 7 103-109 173-179 (195)
187 KOG4218 Nuclear hormone recept 22.3 39 0.00084 30.4 0.8 20 41-60 16-41 (475)
188 PF05488 PAAR_motif: PAAR moti 21.8 60 0.0013 20.9 1.4 18 51-68 34-51 (76)
189 TIGR02487 NrdD anaerobic ribon 21.7 36 0.00079 30.4 0.5 26 85-110 519-547 (579)
190 PRK09263 anaerobic ribonucleos 21.6 38 0.00083 31.3 0.6 38 74-111 625-669 (711)
191 PF12977 DUF3861: Domain of Un 20.9 86 0.0019 22.4 2.1 32 3-34 46-77 (94)
192 PRK14810 formamidopyrimidine-D 20.9 63 0.0014 25.9 1.6 10 99-108 262-271 (272)
193 PRK10811 rne ribonuclease E; R 20.7 18 0.00039 35.5 -1.7 30 52-81 402-431 (1068)
194 PF14311 DUF4379: Domain of un 20.7 62 0.0013 19.8 1.2 22 86-107 24-55 (55)
195 PF07191 zinc-ribbons_6: zinc- 20.6 60 0.0013 22.3 1.3 23 90-112 17-41 (70)
196 PF11672 DUF3268: Protein of u 20.4 1.2E+02 0.0026 21.9 2.8 39 51-99 2-40 (102)
197 cd01407 SIR2-fam SIR2 family o 20.4 65 0.0014 24.5 1.5 36 74-109 88-141 (218)
198 PRK13130 H/ACA RNA-protein com 20.0 99 0.0021 20.2 2.1 24 88-111 3-27 (56)
199 TIGR03831 YgiT_finger YgiT-typ 20.0 48 0.001 18.8 0.6 11 54-64 1-11 (46)
No 1
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=98.57 E-value=1.1e-07 Score=69.12 Aligned_cols=88 Identities=26% Similarity=0.605 Sum_probs=65.7
Q ss_pred CchhhhhhhhhhHHHhhhhhcccchhhHHh-----hhhhcccccccccCCcceEEcCCCccceeeecCCccccccccccC
Q 033690 4 LTASEVAGFGVGTVLLCATIAAPKLDAFFS-----ASQRSSLGMCKKCGDVGMIACSRCKGMGLIKSNGLFGFSIMDELY 78 (113)
Q Consensus 4 ~t~seiagf~vg~lll~atiaa~kvd~fi~-----~sqr~sL~mCk~Cggl~~vaCsrCKGtG~Ik~gg~f~f~~~ddiy 78 (113)
|..+-|.-+.||.|-|+|-|--|= |+- +..|+-...|..|.+.+...|+.|+|+|.+...-. +
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~q~~~~~~~~~~v~C~~C~GsG~~~C~~C~G~G~v~~~~~-g-------- 70 (111)
T PLN03165 3 LDQNTIVAISVGVVSIAVGIGIPV---FYETQIDNAAKRENTQPCFPCSGTGAQVCRFCVGSGNVTVELG-G-------- 70 (111)
T ss_pred cchhhhhhhhhhhhhhhhccCCcE---EEEEeeehhhhhccCCCCCCCCCCCCcCCCCCcCcCeEEEEeC-C--------
Confidence 445556667777777777777662 322 23566778999999999999999999999974310 0
Q ss_pred CCCCccccccceeeccCCCCccceeCCCCCCC
Q 033690 79 PPLDGAESQMKSIGCSKCKGRGHFCCPGCSNK 110 (113)
Q Consensus 79 es~g~~~~~~~~v~C~kCqgkG~~~CP~Csk~ 110 (113)
..+...+|++|+|.|..+|+.|..+
T Consensus 71 -------~~q~~~~C~~C~G~Gk~~C~~C~G~ 95 (111)
T PLN03165 71 -------GEKEVSKCINCDGAGSLTCTTCQGS 95 (111)
T ss_pred -------cEEEEEECCCCCCcceeeCCCCCCC
Confidence 1234789999999999999999764
No 2
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=98.32 E-value=6.8e-07 Score=57.91 Aligned_cols=54 Identities=28% Similarity=0.682 Sum_probs=34.9
Q ss_pred ccccCCcce------EEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCcccee----CCCCCC
Q 033690 43 CKKCGDVGM------IACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHFC----CPGCSN 109 (113)
Q Consensus 43 Ck~Cggl~~------vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~~----CP~Csk 109 (113)
|+.|.+.+. ..|+.|+|+|.|...-...|. ..+..++|++|+|+|.+. |+.|..
T Consensus 1 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~-------------~~~~~~~C~~C~G~G~~i~~~~C~~C~G 64 (66)
T PF00684_consen 1 CPKCNGTGAKPGKKPKTCPQCNGSGQVTRRQQTPGG-------------VFQMQQTCPKCGGTGKIIEKDPCKTCKG 64 (66)
T ss_dssp -CCCTTTSB-STTT-EE-TTSSSSSEEEEEEESSST-------------TEEEEEE-TTTSSSSEE-TSSB-SSSTT
T ss_pred CCcCCCcccCCCCCCcCCcCCCCeeEEEEEEeCCCe-------------EEEEEEECCCCcceeeEECCCCCCCCCC
Confidence 677776554 899999999999654321111 122378999999999885 999964
No 3
>PRK14280 chaperone protein DnaJ; Provisional
Probab=97.86 E-value=1.3e-05 Score=66.31 Aligned_cols=57 Identities=30% Similarity=0.726 Sum_probs=44.2
Q ss_pred ccccccCCcc------eEEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce---eCCCCCCC
Q 033690 41 GMCKKCGDVG------MIACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF---CCPGCSNK 110 (113)
Q Consensus 41 ~mCk~Cggl~------~vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~---~CP~Csk~ 110 (113)
..|..|.|.+ ...|+.|+|+|++...-...++|+ +...+|++|+|+|.. +|+.|..+
T Consensus 144 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~-------------~~~~~C~~C~G~G~~~~~~C~~C~G~ 209 (376)
T PRK14280 144 ETCDTCHGSGAKPGTSKETCSHCGGSGQVSVEQNTPFGRV-------------VNRQTCPHCNGTGQEIKEKCPTCHGK 209 (376)
T ss_pred ccCCCCCCcccCCCCCCccCCCCCCEEEEEEEeecCCceE-------------EEEEEcCCCCCCCceecCCCCCCCCc
Confidence 7899999977 568999999999976554444441 126799999999975 69999654
No 4
>PRK14282 chaperone protein DnaJ; Provisional
Probab=97.85 E-value=1.2e-05 Score=66.13 Aligned_cols=57 Identities=28% Similarity=0.839 Sum_probs=44.8
Q ss_pred ccccccCCcc------eEEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce---eCCCCCCC
Q 033690 41 GMCKKCGDVG------MIACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF---CCPGCSNK 110 (113)
Q Consensus 41 ~mCk~Cggl~------~vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~---~CP~Csk~ 110 (113)
..|+.|.|.+ ...|++|+|+|++...-.++++|+ +.+.+|++|+|+|.+ +|+.|..+
T Consensus 153 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~-------------~~~~~C~~C~G~G~~~~~~C~~C~G~ 218 (369)
T PRK14282 153 ETCPHCGGTGVEPGSGYVTCPKCHGTGRIREERRSFFGVF-------------VSERTCERCGGTGKIPGEYCHECGGS 218 (369)
T ss_pred ccCCCCCccCCCCCCCCcCCCCCCCcCEEEEEEEccCcce-------------EEEEECCCCCCcceeCCCCCCCCCCc
Confidence 6899999976 468999999999987665555541 125699999999976 79999654
No 5
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=97.83 E-value=1.4e-05 Score=64.88 Aligned_cols=57 Identities=26% Similarity=0.718 Sum_probs=45.5
Q ss_pred ccccccCCcc------eEEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce---eCCCCCCC
Q 033690 41 GMCKKCGDVG------MIACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF---CCPGCSNK 110 (113)
Q Consensus 41 ~mCk~Cggl~------~vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~---~CP~Csk~ 110 (113)
..|+.|.|.+ ...|+.|+|+|.+...-.++++|+ + ...+|++|.|+|.+ +|+.|..+
T Consensus 144 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~----~---------~~~~C~~C~G~G~~~~~~C~~C~G~ 209 (354)
T TIGR02349 144 ESCETCHGTGAKPGTDPKTCPTCGGTGQVRRQQGTPFGFF----Q---------QQQTCPTCGGEGKIIKEPCSTCKGK 209 (354)
T ss_pred CcCCCCCCCCCCCCCCCccCCCCCCeeEEEEEEeccCCce----E---------EEEecCCCCCcceecCCCCCCCCCC
Confidence 6899999987 567999999999977666565541 1 15699999999986 69999754
No 6
>PRK14298 chaperone protein DnaJ; Provisional
Probab=97.77 E-value=1.9e-05 Score=65.51 Aligned_cols=57 Identities=30% Similarity=0.744 Sum_probs=43.0
Q ss_pred ccccccCCcce------EEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce---eCCCCCCC
Q 033690 41 GMCKKCGDVGM------IACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF---CCPGCSNK 110 (113)
Q Consensus 41 ~mCk~Cggl~~------vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~---~CP~Csk~ 110 (113)
..|+.|.|.+. ..|+.|.|+|.|...-...+++ .+.+.+|++|+|+|.+ +|+.|..+
T Consensus 142 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~-------------~~~~~~C~~C~G~G~~~~~~C~~C~G~ 207 (377)
T PRK14298 142 ERCSTCSGTGAKPGTSPKRCPTCGGTGQVTTTRSTPLGQ-------------FVTTTTCSTCHGRGQVIESPCPVCSGT 207 (377)
T ss_pred ccCCCCCCCcccCCCCCCcCCCCCCccEEEEEEecCcee-------------EEEEEeCCCCCCCCcccCCCCCCCCCc
Confidence 68999999775 7899999999996543322222 1237899999999965 79999654
No 7
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=1.8e-05 Score=67.37 Aligned_cols=54 Identities=28% Similarity=0.629 Sum_probs=43.3
Q ss_pred ccccccCCc------ceEEcCCCccceeeecCCc-cccccccccCCCCCccccccceeeccCCCCccce---eCCCCCCC
Q 033690 41 GMCKKCGDV------GMIACSRCKGMGLIKSNGL-FGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF---CCPGCSNK 110 (113)
Q Consensus 41 ~mCk~Cggl------~~vaCsrCKGtG~Ik~gg~-f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~---~CP~Csk~ 110 (113)
..|.+|+|- ....|+.|+|+|.|...-. ..|. .+.+|++|+|.|.+ +|+.|...
T Consensus 143 ~~C~~C~GsGak~gt~~~tC~tC~G~G~v~~~~~~g~~~----------------~~~~C~~C~G~G~~i~~pC~~C~G~ 206 (371)
T COG0484 143 VTCSTCHGSGAKPGTDPKTCPTCNGSGQVRTVQRTGFFS----------------FQQTCPTCNGTGKIIKDPCGKCKGK 206 (371)
T ss_pred eECCcCCCCCCCCCCCCCcCCCCCCcCeEEEEEeeeEEE----------------EEEECCCCccceeECCCCCCCCCCC
Confidence 789999999 7899999999999865532 1122 27899999999987 69999543
No 8
>PRK14276 chaperone protein DnaJ; Provisional
Probab=97.75 E-value=2.3e-05 Score=64.88 Aligned_cols=57 Identities=26% Similarity=0.781 Sum_probs=44.4
Q ss_pred ccccccCCcc------eEEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce---eCCCCCCC
Q 033690 41 GMCKKCGDVG------MIACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF---CCPGCSNK 110 (113)
Q Consensus 41 ~mCk~Cggl~------~vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~---~CP~Csk~ 110 (113)
..|..|.|.+ ...|+.|+|+|.|...-...++|+ +...+|++|+|+|.. +|+.|..+
T Consensus 147 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~-------------~~~~~C~~C~G~G~~~~~~C~~C~G~ 212 (380)
T PRK14276 147 ATCHTCNGSGAKPGTSPVTCGKCHGSGVITVDTQTPLGMM-------------RRQVTCDVCHGTGKEIKEPCQTCHGT 212 (380)
T ss_pred ccCCCCcCcccCCCCCCccCCCCCCeeEEEEEEecCCceE-------------EEEEECCCCCCCCccccCCCCCCCCc
Confidence 6899999987 478999999999977655555541 126799999999975 79999653
No 9
>PRK14296 chaperone protein DnaJ; Provisional
Probab=97.74 E-value=2.6e-05 Score=64.68 Aligned_cols=57 Identities=32% Similarity=0.724 Sum_probs=43.0
Q ss_pred ccccccCCcc------eEEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce---eCCCCCCC
Q 033690 41 GMCKKCGDVG------MIACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF---CCPGCSNK 110 (113)
Q Consensus 41 ~mCk~Cggl~------~vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~---~CP~Csk~ 110 (113)
..|..|.|.+ ...|+.|+|+|.+...-.+++.+ .+.+.+|++|+|+|.. +|+.|...
T Consensus 150 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~g~~~-------------~q~~~~C~~C~G~G~~~~~~C~~C~G~ 215 (372)
T PRK14296 150 TNCSKCFGSGAESNSDIHICNNCHGTGEVLVQKNMGFFQ-------------FQQSAKCNVCNGAGKIIKNKCKNCKGK 215 (372)
T ss_pred eccCCCCCCccCCCCCCccCCCCCCCceEEEEEeccceE-------------EEEEecCCCcCCcceeecccccCCCCc
Confidence 6799999976 46799999999996654333311 1227899999999976 59999754
No 10
>PRK14285 chaperone protein DnaJ; Provisional
Probab=97.68 E-value=4.1e-05 Score=63.20 Aligned_cols=53 Identities=28% Similarity=0.726 Sum_probs=41.9
Q ss_pred ccccccCCcc------eEEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce---eCCCCCCC
Q 033690 41 GMCKKCGDVG------MIACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF---CCPGCSNK 110 (113)
Q Consensus 41 ~mCk~Cggl~------~vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~---~CP~Csk~ 110 (113)
..|..|.|.+ ...|+.|+|+|++..+. +|+ +.+.+|++|+|+|.+ +|+.|..+
T Consensus 147 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----G~~-------------~~~~~C~~C~G~G~~~~~~C~~C~G~ 208 (365)
T PRK14285 147 MLCESCLGKKSEKGTSPSICNMCNGSGRVMQGG----GFF-------------RVTTTCPKCYGNGKIISNPCKSCKGK 208 (365)
T ss_pred ccCCCCCCcccCCCCCCccCCCccCceeEEecC----cee-------------EEeeecCCCCCcccccCCCCCCCCCC
Confidence 6899999987 56899999999998632 221 127899999999976 69999654
No 11
>PRK14297 chaperone protein DnaJ; Provisional
Probab=97.68 E-value=3.5e-05 Score=63.67 Aligned_cols=57 Identities=28% Similarity=0.732 Sum_probs=43.3
Q ss_pred ccccccCCcce------EEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce---eCCCCCCC
Q 033690 41 GMCKKCGDVGM------IACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF---CCPGCSNK 110 (113)
Q Consensus 41 ~mCk~Cggl~~------vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~---~CP~Csk~ 110 (113)
..|+.|.|.++ ..|+.|+|+|++...-..+++++ +...+|++|+|+|.. +|+.|..+
T Consensus 149 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~-------------~~~~~C~~C~G~G~~~~~~C~~C~G~ 214 (380)
T PRK14297 149 ENCETCNGTGAKPGTSPKTCDKCGGTGQIRVQRNTPLGSF-------------VSTTTCDKCGGSGKVIEDPCNKCHGK 214 (380)
T ss_pred ccCCCcccccccCCCcCccCCCccCeEEEEEEEEcCCcee-------------EEEEeCCCCCCCceEcCCCCCCCCCC
Confidence 68999999874 67999999999875544333321 126799999999976 79999653
No 12
>PRK14287 chaperone protein DnaJ; Provisional
Probab=97.66 E-value=3.7e-05 Score=63.57 Aligned_cols=56 Identities=27% Similarity=0.649 Sum_probs=44.0
Q ss_pred ccccccCCcc------eEEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce---eCCCCCC
Q 033690 41 GMCKKCGDVG------MIACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF---CCPGCSN 109 (113)
Q Consensus 41 ~mCk~Cggl~------~vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~---~CP~Csk 109 (113)
..|+.|.|.+ ...|+.|.|+|.+...-.++|+|+- .+.+|++|+|+|.+ +|+.|..
T Consensus 139 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~-------------~~~~C~~C~G~G~~~~~~C~~C~G 203 (371)
T PRK14287 139 ETCGTCHGSGAKPGTKPETCSHCGGSGQLNVEQNTPFGRVV-------------NRRVCHHCEGTGKIIKQKCATCGG 203 (371)
T ss_pred ccCCCCCCcccCCCCCCcccCCCCCEEEEEEEEecCCceEE-------------EEEeCCCCCCCCccccccCCCCCC
Confidence 6899999876 5789999999999776555555411 16699999999976 6999964
No 13
>PRK14278 chaperone protein DnaJ; Provisional
Probab=97.64 E-value=4.9e-05 Score=63.02 Aligned_cols=57 Identities=26% Similarity=0.683 Sum_probs=42.5
Q ss_pred ccccccCCcc------eEEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce---eCCCCCCC
Q 033690 41 GMCKKCGDVG------MIACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF---CCPGCSNK 110 (113)
Q Consensus 41 ~mCk~Cggl~------~vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~---~CP~Csk~ 110 (113)
..|+.|.|.+ ...|+.|+|+|.+...-...++++ +...+|++|+|+|.+ +|+.|..+
T Consensus 140 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~-------------~~~~~C~~C~G~G~~~~~~C~~C~G~ 205 (378)
T PRK14278 140 VLCDRCHGKGTAGDSKPVTCDTCGGRGEVQTVQRSFLGQV-------------MTSRPCPTCRGVGEVIPDPCHECAGD 205 (378)
T ss_pred ccCCCCcCccCCCCCCceecCCccCceEEEEEEeccceeE-------------EEEEECCCCCccceeeCCCCCCCCCc
Confidence 7899999876 468999999999865533333321 125699999999975 69999654
No 14
>PRK14277 chaperone protein DnaJ; Provisional
Probab=97.61 E-value=5e-05 Score=63.01 Aligned_cols=57 Identities=25% Similarity=0.723 Sum_probs=44.1
Q ss_pred ccccccCCcc------eEEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce---eCCCCCCC
Q 033690 41 GMCKKCGDVG------MIACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF---CCPGCSNK 110 (113)
Q Consensus 41 ~mCk~Cggl~------~vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~---~CP~Csk~ 110 (113)
..|+.|.|.+ ...|+.|+|+|.+...-..+++++ +...+|++|+|+|.+ +|+.|..+
T Consensus 156 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~-------------~~~~~C~~C~G~G~~~~~~C~~C~G~ 221 (386)
T PRK14277 156 EKCDVCKGSGAKPGSKPVTCPVCHGTGQVRTRQNTPFGRI-------------VNIRTCDRCHGEGKIITDPCNKCGGT 221 (386)
T ss_pred ccCCCCCCCCcCCCCCCccCCCCCCEEEEEEEEeccCceE-------------EEEEECCCCCcceeeccCCCCCCCCC
Confidence 6899999866 578999999999976655555541 124699999999976 69999654
No 15
>PRK10767 chaperone protein DnaJ; Provisional
Probab=97.59 E-value=6.2e-05 Score=61.83 Aligned_cols=53 Identities=26% Similarity=0.757 Sum_probs=41.1
Q ss_pred ccccccCCcc------eEEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce---eCCCCCCC
Q 033690 41 GMCKKCGDVG------MIACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF---CCPGCSNK 110 (113)
Q Consensus 41 ~mCk~Cggl~------~vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~---~CP~Csk~ 110 (113)
..|+.|.|.+ ...|+.|+|+|+|...- +|+ +...+|++|+|+|.+ +|+.|..+
T Consensus 143 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----g~~-------------~~~~~C~~C~G~G~~~~~~C~~C~G~ 204 (371)
T PRK10767 143 VTCDTCHGSGAKPGTSPKTCPTCHGAGQVRMQQ----GFF-------------TVQQTCPTCHGRGKIIKDPCKKCHGQ 204 (371)
T ss_pred ccCCCCCCcccCCCCCCccCCCCCCeeEEEEee----ceE-------------EEEEeCCCCCCceeECCCCCCCCCCC
Confidence 7899999977 45899999999986542 121 125699999999987 79999754
No 16
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=97.57 E-value=5.3e-05 Score=64.37 Aligned_cols=58 Identities=28% Similarity=0.702 Sum_probs=41.7
Q ss_pred ccccccCCcce-----EEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce-----eCCCCCCC
Q 033690 41 GMCKKCGDVGM-----IACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF-----CCPGCSNK 110 (113)
Q Consensus 41 ~mCk~Cggl~~-----vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~-----~CP~Csk~ 110 (113)
..|+.|.|.+. ..|+.|+|+|.+..--.+++ | ..+.+.+|++|+|+|.. +|+.|..+
T Consensus 151 ~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~g~-~------------~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~ 217 (421)
T PTZ00037 151 VICANCEGHGGPKDAFVDCKLCNGQGIRVQIRQMGS-M------------IHQTQSTCNSCNGQGKIIPESKKCKNCSGK 217 (421)
T ss_pred ccccccCCCCCCCCCCccCCCCCCCCeEEEEEeecc-e------------eeEEEEeCCCCCCcceeccccccCCcCCCc
Confidence 68999998774 57999999997533322221 1 11237899999999986 69999765
Q ss_pred C
Q 033690 111 P 111 (113)
Q Consensus 111 ~ 111 (113)
.
T Consensus 218 g 218 (421)
T PTZ00037 218 G 218 (421)
T ss_pred c
Confidence 3
No 17
>PRK14281 chaperone protein DnaJ; Provisional
Probab=97.55 E-value=6.4e-05 Score=62.69 Aligned_cols=57 Identities=28% Similarity=0.756 Sum_probs=44.2
Q ss_pred ccccccCCcce-----EEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce---eCCCCCCC
Q 033690 41 GMCKKCGDVGM-----IACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF---CCPGCSNK 110 (113)
Q Consensus 41 ~mCk~Cggl~~-----vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~---~CP~Csk~ 110 (113)
..|+.|.|.+. ..|+.|+|+|.+.......++++ +.+.+|++|.|+|.. +|+.|..+
T Consensus 164 ~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~-------------~~~~~C~~C~G~G~~~~~~C~~C~G~ 228 (397)
T PRK14281 164 VPCKECNGTGSKTGATETCPTCHGSGEVRQASKTMFGQF-------------VNITACPTCGGEGRVVKDRCPACYGE 228 (397)
T ss_pred ecCCCCCCcccCCCCCccCCCCCCCcEEEEEEecccceE-------------EEEEecCCCcceeeeeCCCCCCCCCC
Confidence 67999998764 67999999999987765554431 126699999999975 79999654
No 18
>PRK14295 chaperone protein DnaJ; Provisional
Probab=97.55 E-value=6.5e-05 Score=62.61 Aligned_cols=53 Identities=38% Similarity=0.814 Sum_probs=41.1
Q ss_pred ccccccCCcc------eEEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce---eCCCCCCC
Q 033690 41 GMCKKCGDVG------MIACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF---CCPGCSNK 110 (113)
Q Consensus 41 ~mCk~Cggl~------~vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~---~CP~Csk~ 110 (113)
..|+.|.|.+ ...|+.|.|+|.+...- ..|. .+.+|++|+|+|.+ +|+.|..+
T Consensus 167 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~-g~~~----------------~~~~C~~C~G~G~~~~~~C~~C~G~ 228 (389)
T PRK14295 167 APCPACSGTGAKNGTTPRVCPTCSGTGQVSRNS-GGFS----------------LSEPCPDCKGRGLIADDPCLVCKGS 228 (389)
T ss_pred ccCCCCcccccCCCCCCcCCCCCCCEeEEEEEe-cceE----------------EEEecCCCcceeEEeccCCCCCCCC
Confidence 6799999876 47899999999986542 1111 26799999999976 69999754
No 19
>PRK14283 chaperone protein DnaJ; Provisional
Probab=97.54 E-value=6.1e-05 Score=62.25 Aligned_cols=58 Identities=28% Similarity=0.654 Sum_probs=44.7
Q ss_pred ccccccCCcc------eEEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce---eCCCCCCCC
Q 033690 41 GMCKKCGDVG------MIACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF---CCPGCSNKP 111 (113)
Q Consensus 41 ~mCk~Cggl~------~vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~---~CP~Csk~~ 111 (113)
..|+.|.|.+ ...|++|+|+|++...-.++++++ +.+.+|++|.|+|.+ +|+.|..+.
T Consensus 147 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~-------------~~~~~C~~C~G~G~~~~~~C~~C~G~g 213 (378)
T PRK14283 147 KKCPVCNGSRAEPGSEVKTCPTCGGTGQVKQVRNTILGQM-------------MNVTTCPDCQGEGKIVEKPCSNCHGKG 213 (378)
T ss_pred ccCCCCCccccCCCCCCccCCCcCCccEEEEEEeccCceE-------------EEEEECCCCCccceecCCCCCCCCCce
Confidence 6899999865 567999999999976655444431 125799999999988 899997653
No 20
>PRK14284 chaperone protein DnaJ; Provisional
Probab=97.54 E-value=8.3e-05 Score=61.82 Aligned_cols=54 Identities=30% Similarity=0.832 Sum_probs=40.9
Q ss_pred cccccccCCcc------eEEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce---eCCCCCCC
Q 033690 40 LGMCKKCGDVG------MIACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF---CCPGCSNK 110 (113)
Q Consensus 40 L~mCk~Cggl~------~vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~---~CP~Csk~ 110 (113)
...|+.|.|.+ ...|+.|.|+|.|...- + + | +-..+|++|+|+|.. +|+.|..+
T Consensus 158 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~--G--~----~---------~~~~~C~~C~G~G~~~~~~C~~C~G~ 220 (391)
T PRK14284 158 YKSCDACSGSGANSSQGIKVCDRCKGSGQVVQSR--G--F----F---------SMASTCPECGGEGRVITDPCSVCRGQ 220 (391)
T ss_pred eccCCCCcccccCCCCCCeecCccCCeeEEEEEe--c--e----E---------EEEEECCCCCCCCcccCCcCCCCCCc
Confidence 47899998766 57899999999986431 1 1 1 126799999999975 79999654
No 21
>PRK14301 chaperone protein DnaJ; Provisional
Probab=97.52 E-value=7.2e-05 Score=61.94 Aligned_cols=53 Identities=30% Similarity=0.907 Sum_probs=41.4
Q ss_pred ccccccCCcce------EEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce---eCCCCCCC
Q 033690 41 GMCKKCGDVGM------IACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF---CCPGCSNK 110 (113)
Q Consensus 41 ~mCk~Cggl~~------vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~---~CP~Csk~ 110 (113)
..|..|.|.+. ..|+.|+|+|+|... .+ | + +.+.+|++|+|+|.+ +|+.|..+
T Consensus 145 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~--~G--~----~---------~~~~~C~~C~G~G~~~~~~C~~C~G~ 206 (373)
T PRK14301 145 VTCDDCGGSGAAPGTSPETCRHCGGSGQVRQS--QG--F----F---------QIAVPCPVCRGEGRVITHPCPKCKGS 206 (373)
T ss_pred ccCCCCCCcccCCCCCCcccCCccCeeEEEEE--ee--e----E---------EEEEeCCCCCceeeecCCCCCCCCCC
Confidence 68999999774 679999999999653 12 1 1 127899999999975 79999754
No 22
>PRK14289 chaperone protein DnaJ; Provisional
Probab=97.52 E-value=6.9e-05 Score=61.94 Aligned_cols=59 Identities=25% Similarity=0.608 Sum_probs=45.6
Q ss_pred cccccccCCcce------EEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce---eCCCCCCC
Q 033690 40 LGMCKKCGDVGM------IACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF---CCPGCSNK 110 (113)
Q Consensus 40 L~mCk~Cggl~~------vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~---~CP~Csk~ 110 (113)
...|..|.+.+. ..|+.|+|+|++..--..+++++ +.+.+|++|.|+|.+ +|+.|+..
T Consensus 154 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~-------------~~~~~C~~C~G~G~~~~~~C~~C~G~ 220 (386)
T PRK14289 154 YVPCSHCHGTGAEGNNGSETCPTCKGSGSVTRVQNTILGTM-------------QTQSTCPTCNGEGKIIKKKCKKCGGE 220 (386)
T ss_pred ecccCCCCCCCCCCCCCCCcCCCCcCeEEEEEEEecccceE-------------EEEEecCCCCccccccCcCCCCCCCC
Confidence 488999988774 68999999999976544444431 127899999999976 79999765
Q ss_pred C
Q 033690 111 P 111 (113)
Q Consensus 111 ~ 111 (113)
.
T Consensus 221 g 221 (386)
T PRK14289 221 G 221 (386)
T ss_pred c
Confidence 3
No 23
>PRK14291 chaperone protein DnaJ; Provisional
Probab=97.52 E-value=6.9e-05 Score=62.12 Aligned_cols=54 Identities=35% Similarity=0.767 Sum_probs=42.0
Q ss_pred ccccccCCcc------eEEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccc--eeCCCCCCCC
Q 033690 41 GMCKKCGDVG------MIACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGH--FCCPGCSNKP 111 (113)
Q Consensus 41 ~mCk~Cggl~------~vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~--~~CP~Csk~~ 111 (113)
..|+.|.|.+ ...|++|+|+|++...+.+ + +-..+|++|+|+|. -+|+.|..+.
T Consensus 157 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~-~----------------~~~~~C~~C~G~G~~~~~C~~C~G~g 218 (382)
T PRK14291 157 VPCEACGGTGYDPGSGEKVCPTCGGSGEIYQRGGF-F----------------RISQTCPTCGGEGVLREPCSKCNGRG 218 (382)
T ss_pred ccCCCCccccCCCCCCCccCCCCCCceEEEEecce-E----------------EEEecCCCCCCceEEccCCCCCCCCc
Confidence 7899999977 6789999999999776321 0 12679999999994 3799997643
No 24
>PRK14286 chaperone protein DnaJ; Provisional
Probab=97.50 E-value=9.6e-05 Score=61.18 Aligned_cols=53 Identities=26% Similarity=0.775 Sum_probs=40.9
Q ss_pred ccccccCCcce------EEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce---eCCCCCCC
Q 033690 41 GMCKKCGDVGM------IACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF---CCPGCSNK 110 (113)
Q Consensus 41 ~mCk~Cggl~~------vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~---~CP~Csk~ 110 (113)
..|..|.|.+. ..|+.|+|+|.|... . +++ +...+|++|+|+|.. +|+.|..+
T Consensus 151 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~--~--G~~-------------~~~~~C~~C~G~G~~~~~~C~~C~G~ 212 (372)
T PRK14286 151 ESCVDCNGSGASKGSSPTTCPDCGGSGQIRRT--Q--GFF-------------SVATTCPTCRGKGTVISNPCKTCGGQ 212 (372)
T ss_pred ccCCCCcCCCcCCCCCCccCCCCcCeEEEEEE--e--ceE-------------EEEEeCCCCCceeeEecccCCCCCCC
Confidence 68999999874 789999999998654 1 221 125699999999965 79999654
No 25
>PRK14300 chaperone protein DnaJ; Provisional
Probab=97.48 E-value=0.0001 Score=60.86 Aligned_cols=53 Identities=26% Similarity=0.752 Sum_probs=41.1
Q ss_pred ccccccCCcc------eEEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce---eCCCCCCC
Q 033690 41 GMCKKCGDVG------MIACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF---CCPGCSNK 110 (113)
Q Consensus 41 ~mCk~Cggl~------~vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~---~CP~Csk~ 110 (113)
..|+.|.|-+ ...|+.|+|+|.+... ++|+ +...+|++|+|+|.. +|+.|..+
T Consensus 146 ~~C~~C~G~g~~~~~~~~~C~~C~G~G~~~~~----~g~~-------------~~~~~C~~C~G~G~~~~~~C~~C~G~ 207 (372)
T PRK14300 146 VKCDTCHGSGSEKGETVTTCDACSGVGATRMQ----QGFF-------------TIEQACHKCQGNGQIIKNPCKKCHGM 207 (372)
T ss_pred cccCCCCCcccCCCCCCccCCCccCeEEEEEe----eceE-------------EEEEeCCCCCccceEeCCCCCCCCCc
Confidence 7899999966 6789999999998753 1221 125699999999977 79999754
No 26
>PRK14294 chaperone protein DnaJ; Provisional
Probab=97.46 E-value=0.00011 Score=60.51 Aligned_cols=54 Identities=24% Similarity=0.732 Sum_probs=41.6
Q ss_pred ccccccCCcc------eEEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce---eCCCCCCCC
Q 033690 41 GMCKKCGDVG------MIACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF---CCPGCSNKP 111 (113)
Q Consensus 41 ~mCk~Cggl~------~vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~---~CP~Csk~~ 111 (113)
..|..|.|.+ ...|+.|.|+|.+... + +|+ +-+.+|++|+|+|.. +|+.|..+.
T Consensus 145 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~--~--G~~-------------~~~~~C~~C~G~G~~~~~~C~~C~G~g 207 (366)
T PRK14294 145 ETCEECHGSGCEPGTSPTTCPQCGGSGQVTQS--Q--GFF-------------SIRTTCPRCRGMGKVIVSPCKTCHGQG 207 (366)
T ss_pred ccCCCCCCccccCCCCcccCCCcCCeEEEEEE--e--eeE-------------EEEeeCCCCCCcCeecCcCCCCCCCce
Confidence 7899999977 4689999999998643 1 221 126799999999976 799997643
No 27
>PRK14279 chaperone protein DnaJ; Provisional
Probab=97.43 E-value=0.00012 Score=61.19 Aligned_cols=53 Identities=30% Similarity=0.778 Sum_probs=40.7
Q ss_pred ccccccCCcce------EEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce---eCCCCCCC
Q 033690 41 GMCKKCGDVGM------IACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF---CCPGCSNK 110 (113)
Q Consensus 41 ~mCk~Cggl~~------vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~---~CP~Csk~ 110 (113)
..|+.|.|.+. ..|+.|.|+|.+...- ++ + ..+.+|++|+|+|.+ +|+.|..+
T Consensus 174 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----g~----~---------~~~~~C~~C~G~G~~i~~~C~~C~G~ 235 (392)
T PRK14279 174 APCTTCHGSGARPGTSPKVCPTCNGSGVISRNQ----GA----F---------GFSEPCTDCRGTGSIIEDPCEECKGT 235 (392)
T ss_pred ccCCCCccccccCCCCCCCCCCCcceEEEEEEe----cc----e---------EEEEecCCCCceeEEeCCcCCCCCCC
Confidence 78999999874 6799999999986541 11 1 126899999999965 69999653
No 28
>PRK14288 chaperone protein DnaJ; Provisional
Probab=97.42 E-value=0.00012 Score=60.47 Aligned_cols=53 Identities=28% Similarity=0.844 Sum_probs=40.1
Q ss_pred ccccccCCcc-----eEEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce---eCCCCCCC
Q 033690 41 GMCKKCGDVG-----MIACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF---CCPGCSNK 110 (113)
Q Consensus 41 ~mCk~Cggl~-----~vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~---~CP~Csk~ 110 (113)
..|..|+|.+ ...|+.|+|+|.|.... + + + +-..+|++|+|+|.+ +|+.|..+
T Consensus 141 ~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~--g--~----~---------~~~~~C~~C~G~G~~~~~~C~~C~G~ 201 (369)
T PRK14288 141 SVCESCDGTGAKDKALETCKQCNGQGQVFMRQ--G--F----M---------SFAQTCGACQGKGKIIKTPCQACKGK 201 (369)
T ss_pred ccCCCCCCcccCCCCCcCCCCCCCCcEEEEEe--c--e----E---------EEEEecCCCCCCceEccccCccCCCc
Confidence 5899999977 46799999999986542 1 1 0 124589999999954 69999754
No 29
>PRK14290 chaperone protein DnaJ; Provisional
Probab=97.42 E-value=9.4e-05 Score=60.87 Aligned_cols=58 Identities=31% Similarity=0.757 Sum_probs=42.0
Q ss_pred ccccccCCcce-----EEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce---eCCCCCCCC
Q 033690 41 GMCKKCGDVGM-----IACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF---CCPGCSNKP 111 (113)
Q Consensus 41 ~mCk~Cggl~~-----vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~---~CP~Csk~~ 111 (113)
..|+.|.|.+. ..|+.|+|+|++...-.++ + ...+.+.+|++|.|+|.+ +|+.|..+.
T Consensus 150 ~~C~~C~G~g~~~~~~~~C~~C~G~G~~~~~~~~g--~-----------~~~~~~~~C~~C~G~G~~~~~~C~~C~G~g 215 (365)
T PRK14290 150 AMCPDCSGTGAKNGKLITCPTCHGTGQQRIVRGQG--F-----------FRMVTVTTCRTCGGRGRIPEEKCPRCNGTG 215 (365)
T ss_pred ccCCCCccccCCCCCCccCCCCCCcCEEEEEeccC--e-----------EEEEEEEeCCCCCCceeEccCCCCCCCCce
Confidence 67999988774 6899999999885442222 1 112236799999999966 799997653
No 30
>PRK14293 chaperone protein DnaJ; Provisional
Probab=97.40 E-value=0.00014 Score=60.12 Aligned_cols=58 Identities=26% Similarity=0.700 Sum_probs=42.8
Q ss_pred ccccccCCcc------eEEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce---eCCCCCCCC
Q 033690 41 GMCKKCGDVG------MIACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF---CCPGCSNKP 111 (113)
Q Consensus 41 ~mCk~Cggl~------~vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~---~CP~Csk~~ 111 (113)
..|..|.+.+ ...|+.|+|+|++...-...++++ +...+|++|+|+|.. +|+.|..+.
T Consensus 144 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~-------------~~~~~C~~C~G~G~~~~~~C~~C~G~g 210 (374)
T PRK14293 144 ETCETCRGSGAKPGTGPTTCSTCGGAGQVRRATRTPFGSF-------------TQVSECPTCNGTGQVIEDPCDACGGQG 210 (374)
T ss_pred ccCCCCCCcCCCCCCCCeeCCCCCCcceEEEEEecCcceE-------------EEEeeCCCCCcceeEeccCCCCCCCCc
Confidence 6799998865 457999999999876543333321 114699999999988 899997543
No 31
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=97.38 E-value=0.00013 Score=66.64 Aligned_cols=65 Identities=31% Similarity=0.685 Sum_probs=42.3
Q ss_pred ccccccCCcceE-----EcCCCccceeeecCCccccccccccCCC-CCccccccceeeccCCCCccc----eeCCCCCCC
Q 033690 41 GMCKKCGDVGMI-----ACSRCKGMGLIKSNGLFGFSIMDELYPP-LDGAESQMKSIGCSKCKGRGH----FCCPGCSNK 110 (113)
Q Consensus 41 ~mCk~Cggl~~v-----aCsrCKGtG~Ik~gg~f~f~~~ddiyes-~g~~~~~~~~v~C~kCqgkG~----~~CP~Csk~ 110 (113)
..|+.|+|.|.+ .|+.|+|||.++.-.+ ..+-.+++- +. .-....+||++|+|+|. .+||+|+..
T Consensus 3 ~~C~~C~g~G~i~v~~e~c~vc~gtG~~~~~d~---k~~~~~~~~~~D--~~~~~~~pc~~c~gkG~V~v~~~c~~c~G~ 77 (715)
T COG1107 3 KKCPECGGKGKIVVGEEECPVCHGTGFSDDFDP---KGVANLSRETVD--LFASFEIPCPKCRGKGTVTVYDTCPECGGT 77 (715)
T ss_pred ccccccCCCceEeeeeeecccccccccccccCh---hhhhhhhhcccc--ccccCCCCCCeeccceeEEEEeecccCCCc
Confidence 469999999876 5999999999954433 111111110 00 11223689999999985 579999653
No 32
>PRK14292 chaperone protein DnaJ; Provisional
Probab=97.28 E-value=0.00022 Score=58.58 Aligned_cols=57 Identities=23% Similarity=0.698 Sum_probs=42.6
Q ss_pred ccccccCCcc-------eEEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce---eCCCCCCC
Q 033690 41 GMCKKCGDVG-------MIACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF---CCPGCSNK 110 (113)
Q Consensus 41 ~mCk~Cggl~-------~vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~---~CP~Csk~ 110 (113)
..|..|.|.+ ...|+.|.|+|.+...-.-.++++ +...+|++|.|.|.. +|+.|..+
T Consensus 140 ~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~-------------~~~~~C~~C~G~G~~~~~~C~~C~G~ 206 (371)
T PRK14292 140 TECEHCHGSRTEPGGKPPKTCPTCRGAGAVRAQARTIFGVV-------------ETQQPCPTCRGEGQIITDPCTVCRGR 206 (371)
T ss_pred ecCCCCcccccCCCCCCCccCCCCCCccEEEEEEeccCceE-------------EEeeecCCCcccceecCCCCCCCCCc
Confidence 7899999865 578999999999875543333331 115689999999976 79999643
No 33
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.00057 Score=56.99 Aligned_cols=56 Identities=30% Similarity=0.765 Sum_probs=47.6
Q ss_pred hcccccccccCCcceEEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccceeCCCCCC
Q 033690 37 RSSLGMCKKCGDVGMIACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHFCCPGCSN 109 (113)
Q Consensus 37 r~sL~mCk~Cggl~~vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~~CP~Csk 109 (113)
+-..+-|..|||.+-+.|..|.|.-+|-.+ ++.......|++|+--|..+||.|+.
T Consensus 226 ~~~~~~C~~CGg~rFlpC~~C~GS~kv~~~-----------------~~~~~~~~rC~~CNENGLvrCp~Cs~ 281 (281)
T KOG2824|consen 226 CEGGGVCESCGGARFLPCSNCHGSCKVHEE-----------------EEDDGGVLRCLECNENGLVRCPVCSN 281 (281)
T ss_pred CCCCCcCCCcCCcceEecCCCCCceeeeee-----------------ccCCCcEEECcccCCCCceeCCccCC
Confidence 556688999999999999999999999775 13344478999999999999999973
No 34
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=96.74 E-value=0.0015 Score=42.24 Aligned_cols=39 Identities=33% Similarity=0.865 Sum_probs=27.9
Q ss_pred cccccccccCCcceE---------------EcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCcc
Q 033690 38 SSLGMCKKCGDVGMI---------------ACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRG 100 (113)
Q Consensus 38 ~sL~mCk~Cggl~~v---------------aCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG 100 (113)
.....|+.|+|.+++ .|+.|+|+|.+- . ..+|+.|.|.|
T Consensus 13 ~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i-~-----------------------~~~C~~C~G~g 66 (66)
T PF00684_consen 13 KKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKII-E-----------------------KDPCKTCKGSG 66 (66)
T ss_dssp TT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE--T-----------------------SSB-SSSTTSS
T ss_pred CCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEE-C-----------------------CCCCCCCCCcC
Confidence 456789999998876 699999999985 2 45899999876
No 35
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=96.52 E-value=0.0039 Score=46.59 Aligned_cols=50 Identities=24% Similarity=0.658 Sum_probs=39.2
Q ss_pred ccccccccCCcceEEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccceeC
Q 033690 39 SLGMCKKCGDVGMIACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHFCC 104 (113)
Q Consensus 39 sL~mCk~Cggl~~vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~~C 104 (113)
....|..|||.+-|.|+.|.|.-++-..+.+ .......|++|+--|..+|
T Consensus 98 ~~~~C~~Cgg~rfv~C~~C~Gs~k~~~~~~~----------------~~~~~~rC~~Cnengl~~c 147 (147)
T cd03031 98 GGGVCEGCGGARFVPCSECNGSCKVFAENAT----------------AAGGFLRCPECNENGLVRC 147 (147)
T ss_pred CCCCCCCCCCcCeEECCCCCCcceEEeccCc----------------ccccEEECCCCCccccccC
Confidence 4567999999999999999999998544321 1123678999999998887
No 36
>PRK14290 chaperone protein DnaJ; Provisional
Probab=95.83 E-value=0.0084 Score=49.48 Aligned_cols=39 Identities=33% Similarity=0.821 Sum_probs=31.9
Q ss_pred ccccccccCCcce---------------EEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce
Q 033690 39 SLGMCKKCGDVGM---------------IACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF 102 (113)
Q Consensus 39 sL~mCk~Cggl~~---------------vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~ 102 (113)
....|+.|+|.++ ..|+.|+|+|.+. .-+|++|.|+|..
T Consensus 164 ~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~-------------------------~~~C~~C~G~g~v 217 (365)
T PRK14290 164 KLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIP-------------------------EEKCPRCNGTGTV 217 (365)
T ss_pred CCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEc-------------------------cCCCCCCCCceeE
Confidence 4678999999985 4799999999873 3369999999874
No 37
>PRK10767 chaperone protein DnaJ; Provisional
Probab=95.81 E-value=0.0088 Score=49.27 Aligned_cols=38 Identities=34% Similarity=0.855 Sum_probs=30.4
Q ss_pred cccccccCCcceEE-----------cCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce
Q 033690 40 LGMCKKCGDVGMIA-----------CSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF 102 (113)
Q Consensus 40 L~mCk~Cggl~~va-----------CsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~ 102 (113)
...|+.|+|.+++. |+.|.|+|.+.. .+|++|.|+|..
T Consensus 159 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~-------------------------~~C~~C~G~g~v 207 (371)
T PRK10767 159 PKTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKIIK-------------------------DPCKKCHGQGRV 207 (371)
T ss_pred CccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeECC-------------------------CCCCCCCCCceE
Confidence 46899999998874 999999998632 358999988865
No 38
>PRK14288 chaperone protein DnaJ; Provisional
Probab=95.77 E-value=0.0096 Score=49.40 Aligned_cols=39 Identities=36% Similarity=0.910 Sum_probs=31.3
Q ss_pred ccccccccCCcceE-----------EcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce
Q 033690 39 SLGMCKKCGDVGMI-----------ACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF 102 (113)
Q Consensus 39 sL~mCk~Cggl~~v-----------aCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~ 102 (113)
....|+.|+|.+++ .|+.|.|+|.+.. -+|+.|.|+|..
T Consensus 155 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~-------------------------~~C~~C~G~g~v 204 (369)
T PRK14288 155 ALETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKIIK-------------------------TPCQACKGKTYI 204 (369)
T ss_pred CCcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEcc-------------------------ccCccCCCcceE
Confidence 56789999999976 5999999998732 258899888864
No 39
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.76 E-value=0.0096 Score=51.69 Aligned_cols=23 Identities=30% Similarity=0.793 Sum_probs=20.7
Q ss_pred ccccccCCcceEEcCCCccceee
Q 033690 41 GMCKKCGDVGMIACSRCKGMGLI 63 (113)
Q Consensus 41 ~mCk~Cggl~~vaCsrCKGtG~I 63 (113)
.-|-.|.+-|.+.|+.|.|.|+.
T Consensus 188 ~~ch~c~gRG~~vc~gc~g~G~~ 210 (406)
T KOG2813|consen 188 TFCHACLGRGAMVCHGCSGSGSN 210 (406)
T ss_pred hhhhcccCCCceeccCcCCCCcc
Confidence 56999999999999999999963
No 40
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=95.73 E-value=0.008 Score=43.85 Aligned_cols=36 Identities=25% Similarity=0.627 Sum_probs=24.6
Q ss_pred ccccccccCCcceEEcCCCccceeeecCCcccccccc
Q 033690 39 SLGMCKKCGDVGMIACSRCKGMGLIKSNGLFGFSIMD 75 (113)
Q Consensus 39 sL~mCk~Cggl~~vaCsrCKGtG~Ik~gg~f~f~~~d 75 (113)
....|++|+|.+.+.|..|+|.|+++.. .-+|.|-|
T Consensus 74 ~~~~C~~C~G~Gk~~C~~C~G~G~~~~~-~~~~~~~~ 109 (111)
T PLN03165 74 EVSKCINCDGAGSLTCTTCQGSGIQPRY-LDRREFKD 109 (111)
T ss_pred EEEECCCCCCcceeeCCCCCCCEEEeee-ecccccCC
Confidence 3456888888887778888888877665 44454444
No 41
>PRK14286 chaperone protein DnaJ; Provisional
Probab=95.68 E-value=0.01 Score=49.36 Aligned_cols=38 Identities=37% Similarity=0.897 Sum_probs=29.3
Q ss_pred cccccccCCcceE-----------EcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce
Q 033690 40 LGMCKKCGDVGMI-----------ACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF 102 (113)
Q Consensus 40 L~mCk~Cggl~~v-----------aCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~ 102 (113)
...|++|+|.+++ .|+.|+|+|.+.. -+|+.|.|+|..
T Consensus 167 ~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~-------------------------~~C~~C~G~g~~ 215 (372)
T PRK14286 167 PTTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVIS-------------------------NPCKTCGGQGLQ 215 (372)
T ss_pred CccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEec-------------------------ccCCCCCCCcEE
Confidence 4679999998865 6999999997742 258888888765
No 42
>PRK14300 chaperone protein DnaJ; Provisional
Probab=95.68 E-value=0.0098 Score=49.31 Aligned_cols=38 Identities=39% Similarity=0.990 Sum_probs=30.7
Q ss_pred cccccccCCcceE-----------EcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce
Q 033690 40 LGMCKKCGDVGMI-----------ACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF 102 (113)
Q Consensus 40 L~mCk~Cggl~~v-----------aCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~ 102 (113)
...|+.|+|.+++ .|+.|.|+|.+.. -+|+.|.|+|..
T Consensus 162 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~-------------------------~~C~~C~G~g~v 210 (372)
T PRK14300 162 VTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQIIK-------------------------NPCKKCHGMGRY 210 (372)
T ss_pred CccCCCccCeEEEEEeeceEEEEEeCCCCCccceEeC-------------------------CCCCCCCCceEE
Confidence 4679999999876 6999999998742 258999998874
No 43
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.65 E-value=0.011 Score=50.63 Aligned_cols=12 Identities=25% Similarity=0.697 Sum_probs=6.2
Q ss_pred ccccccccCCcc
Q 033690 39 SLGMCKKCGDVG 50 (113)
Q Consensus 39 sL~mCk~Cggl~ 50 (113)
+...|++|+|.+
T Consensus 158 ~~~tC~tC~G~G 169 (371)
T COG0484 158 DPKTCPTCNGSG 169 (371)
T ss_pred CCCcCCCCCCcC
Confidence 444555555544
No 44
>PRK14298 chaperone protein DnaJ; Provisional
Probab=95.64 E-value=0.0094 Score=49.68 Aligned_cols=39 Identities=36% Similarity=0.892 Sum_probs=30.5
Q ss_pred ccccccccCCcceE---------------EcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce
Q 033690 39 SLGMCKKCGDVGMI---------------ACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF 102 (113)
Q Consensus 39 sL~mCk~Cggl~~v---------------aCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~ 102 (113)
....|+.|+|.+++ .|+.|.|+|.+.. -+|++|.|+|..
T Consensus 157 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~-------------------------~~C~~C~G~g~v 210 (377)
T PRK14298 157 SPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIE-------------------------SPCPVCSGTGKV 210 (377)
T ss_pred CCCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCcccC-------------------------CCCCCCCCccEE
Confidence 34679999999865 6999999997632 258999988865
No 45
>PRK14285 chaperone protein DnaJ; Provisional
Probab=95.52 E-value=0.012 Score=48.81 Aligned_cols=39 Identities=38% Similarity=0.939 Sum_probs=31.3
Q ss_pred ccccccccCCcceE-----------EcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce
Q 033690 39 SLGMCKKCGDVGMI-----------ACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF 102 (113)
Q Consensus 39 sL~mCk~Cggl~~v-----------aCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~ 102 (113)
....|+.|+|.+++ .|+.|.|+|.+.. -+|+.|.|+|..
T Consensus 162 ~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~-------------------------~~C~~C~G~g~v 211 (365)
T PRK14285 162 SPSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKIIS-------------------------NPCKSCKGKGSL 211 (365)
T ss_pred CCccCCCccCceeEEecCceeEEeeecCCCCCcccccC-------------------------CCCCCCCCCCEE
Confidence 45689999998865 7999999998732 259999999865
No 46
>PRK14282 chaperone protein DnaJ; Provisional
Probab=95.44 E-value=0.014 Score=48.29 Aligned_cols=39 Identities=38% Similarity=0.873 Sum_probs=30.4
Q ss_pred ccccccccCCcceE---------------EcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce
Q 033690 39 SLGMCKKCGDVGMI---------------ACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF 102 (113)
Q Consensus 39 sL~mCk~Cggl~~v---------------aCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~ 102 (113)
....|++|+|.+++ .|+.|.|+|.+.. -+|+.|.|+|..
T Consensus 168 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~-------------------------~~C~~C~G~g~v 221 (369)
T PRK14282 168 GYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPG-------------------------EYCHECGGSGRI 221 (369)
T ss_pred CCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeCC-------------------------CCCCCCCCceeE
Confidence 45679999999865 5999999998732 258889888864
No 47
>PRK14284 chaperone protein DnaJ; Provisional
Probab=95.44 E-value=0.011 Score=49.30 Aligned_cols=39 Identities=31% Similarity=0.885 Sum_probs=31.3
Q ss_pred ccccccccCCcce-----------EEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce
Q 033690 39 SLGMCKKCGDVGM-----------IACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF 102 (113)
Q Consensus 39 sL~mCk~Cggl~~-----------vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~ 102 (113)
....|+.|++.++ ..|+.|.|+|.+.. -+|+.|.|+|..
T Consensus 174 ~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~-------------------------~~C~~C~G~g~v 223 (391)
T PRK14284 174 GIKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRVIT-------------------------DPCSVCRGQGRI 223 (391)
T ss_pred CCeecCccCCeeEEEEEeceEEEEEECCCCCCCCcccC-------------------------CcCCCCCCccee
Confidence 3567999999988 47999999987632 259999998875
No 48
>PRK14296 chaperone protein DnaJ; Provisional
Probab=95.41 E-value=0.013 Score=48.70 Aligned_cols=39 Identities=33% Similarity=0.981 Sum_probs=30.4
Q ss_pred ccccccccCCcceE---------------EcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce
Q 033690 39 SLGMCKKCGDVGMI---------------ACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF 102 (113)
Q Consensus 39 sL~mCk~Cggl~~v---------------aCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~ 102 (113)
....|++|+|.+++ .|+.|.|+|.+.. -+|+.|.|+|..
T Consensus 165 ~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~~-------------------------~~C~~C~G~g~v 218 (372)
T PRK14296 165 DIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIK-------------------------NKCKNCKGKGKY 218 (372)
T ss_pred CCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceeec-------------------------ccccCCCCceEE
Confidence 45679999999865 7999999998732 358888888854
No 49
>PRK14301 chaperone protein DnaJ; Provisional
Probab=95.41 E-value=0.013 Score=48.67 Aligned_cols=40 Identities=38% Similarity=0.945 Sum_probs=30.8
Q ss_pred cccccccccCCcceE-----------EcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce
Q 033690 38 SSLGMCKKCGDVGMI-----------ACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF 102 (113)
Q Consensus 38 ~sL~mCk~Cggl~~v-----------aCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~ 102 (113)
+....|+.|+|.+++ .|+.|+|+|.+.. -+|++|.|+|..
T Consensus 159 ~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~-------------------------~~C~~C~G~g~v 209 (373)
T PRK14301 159 TSPETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVIT-------------------------HPCPKCKGSGIV 209 (373)
T ss_pred CCCcccCCccCeeEEEEEeeeEEEEEeCCCCCceeeecC-------------------------CCCCCCCCCcee
Confidence 345679999998864 6999999998732 258888888864
No 50
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=95.37 E-value=0.01 Score=46.51 Aligned_cols=28 Identities=29% Similarity=0.791 Sum_probs=24.3
Q ss_pred cccccccCCcceEE-----cCCCccceeeecCC
Q 033690 40 LGMCKKCGDVGMIA-----CSRCKGMGLIKSNG 67 (113)
Q Consensus 40 L~mCk~Cggl~~va-----CsrCKGtG~Ik~gg 67 (113)
...|++|+|.|.+. |+.|+|+|++++.-
T Consensus 99 ~~~C~~C~G~G~~i~~~~~C~~C~G~G~v~~~~ 131 (186)
T TIGR02642 99 SCKCPRCRGTGLIQRRQRECDTCAGTGRFRPTV 131 (186)
T ss_pred CCcCCCCCCeeEEecCCCCCCCCCCccEEeeeE
Confidence 57899999999876 99999999997763
No 51
>PRK14294 chaperone protein DnaJ; Provisional
Probab=95.35 E-value=0.015 Score=47.96 Aligned_cols=39 Identities=38% Similarity=1.017 Sum_probs=30.9
Q ss_pred ccccccccCCcceE-----------EcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce
Q 033690 39 SLGMCKKCGDVGMI-----------ACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF 102 (113)
Q Consensus 39 sL~mCk~Cggl~~v-----------aCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~ 102 (113)
....|+.|+|.+++ .|+.|+|+|.+.. -+|+.|.|+|..
T Consensus 160 ~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~-------------------------~~C~~C~G~g~v 209 (366)
T PRK14294 160 SPTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVIV-------------------------SPCKTCHGQGRV 209 (366)
T ss_pred CcccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeecC-------------------------cCCCCCCCceEe
Confidence 35689999999875 6999999998632 259999988864
No 52
>PRK14280 chaperone protein DnaJ; Provisional
Probab=95.24 E-value=0.016 Score=48.07 Aligned_cols=26 Identities=35% Similarity=0.876 Sum_probs=20.4
Q ss_pred ccccccccCCcceE---------------EcCCCccceeee
Q 033690 39 SLGMCKKCGDVGMI---------------ACSRCKGMGLIK 64 (113)
Q Consensus 39 sL~mCk~Cggl~~v---------------aCsrCKGtG~Ik 64 (113)
....|+.|+|.+++ .|+.|+|+|.+.
T Consensus 159 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~ 199 (376)
T PRK14280 159 SKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEI 199 (376)
T ss_pred CCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCcee
Confidence 45679999998754 699999998763
No 53
>PRK14277 chaperone protein DnaJ; Provisional
Probab=95.21 E-value=0.017 Score=48.07 Aligned_cols=38 Identities=37% Similarity=0.868 Sum_probs=29.9
Q ss_pred cccccccCCcceE---------------EcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce
Q 033690 40 LGMCKKCGDVGMI---------------ACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF 102 (113)
Q Consensus 40 L~mCk~Cggl~~v---------------aCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~ 102 (113)
...|+.|+|.+++ .|+.|+|+|.+.. -+|+.|.|+|..
T Consensus 172 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~-------------------------~~C~~C~G~g~v 224 (386)
T PRK14277 172 PVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIIT-------------------------DPCNKCGGTGRI 224 (386)
T ss_pred CccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeecc-------------------------CCCCCCCCCcEE
Confidence 5679999999765 5999999998732 258888888865
No 54
>PRK14279 chaperone protein DnaJ; Provisional
Probab=95.21 E-value=0.018 Score=48.23 Aligned_cols=39 Identities=38% Similarity=0.900 Sum_probs=31.0
Q ss_pred ccccccccCCcceE-----------EcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce
Q 033690 39 SLGMCKKCGDVGMI-----------ACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF 102 (113)
Q Consensus 39 sL~mCk~Cggl~~v-----------aCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~ 102 (113)
....|+.|+|.+++ .|+.|.|+|.+.. -+|..|.|+|..
T Consensus 189 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i~-------------------------~~C~~C~G~g~v 238 (392)
T PRK14279 189 SPKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSIIE-------------------------DPCEECKGTGVT 238 (392)
T ss_pred CCCCCCCCcceEEEEEEecceEEEEecCCCCceeEEeC-------------------------CcCCCCCCCeEE
Confidence 46789999999875 6999999998742 258888888864
No 55
>PRK14276 chaperone protein DnaJ; Provisional
Probab=95.19 E-value=0.017 Score=47.98 Aligned_cols=39 Identities=38% Similarity=0.805 Sum_probs=29.9
Q ss_pred ccccccccCCcceE---------------EcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce
Q 033690 39 SLGMCKKCGDVGMI---------------ACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF 102 (113)
Q Consensus 39 sL~mCk~Cggl~~v---------------aCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~ 102 (113)
+...|+.|+|.+++ .|+.|+|+|.+.. -+|++|.|+|..
T Consensus 162 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~-------------------------~~C~~C~G~g~~ 215 (380)
T PRK14276 162 SPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIK-------------------------EPCQTCHGTGHE 215 (380)
T ss_pred CCccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCcccc-------------------------CCCCCCCCceEE
Confidence 45789999998764 5999999997742 258888888864
No 56
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=95.16 E-value=0.018 Score=47.01 Aligned_cols=38 Identities=39% Similarity=0.907 Sum_probs=29.0
Q ss_pred cccccccCCcce---------------EEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce
Q 033690 40 LGMCKKCGDVGM---------------IACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF 102 (113)
Q Consensus 40 L~mCk~Cggl~~---------------vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~ 102 (113)
...|+.|+|.++ ..|+.|+|+|.+.. -+|++|+|+|..
T Consensus 160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~-------------------------~~C~~C~G~g~v 212 (354)
T TIGR02349 160 PKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIK-------------------------EPCSTCKGKGRV 212 (354)
T ss_pred CccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceecC-------------------------CCCCCCCCCcEe
Confidence 567999999875 46999999987632 258889888864
No 57
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=95.16 E-value=0.018 Score=49.16 Aligned_cols=41 Identities=34% Similarity=0.806 Sum_probs=31.6
Q ss_pred ccccccccCCcce---------------EEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce
Q 033690 39 SLGMCKKCGDVGM---------------IACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF 102 (113)
Q Consensus 39 sL~mCk~Cggl~~---------------vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~ 102 (113)
....|++|+|.++ +.|+.|+|+|.+... .-+|++|.|+|..
T Consensus 165 ~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~-----------------------~~~C~~C~G~g~v 220 (421)
T PTZ00037 165 AFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPE-----------------------SKKCKNCSGKGVK 220 (421)
T ss_pred CCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceeccc-----------------------cccCCcCCCccee
Confidence 4578999999885 379999999987542 2368888888865
No 58
>PRK14295 chaperone protein DnaJ; Provisional
Probab=95.07 E-value=0.023 Score=47.64 Aligned_cols=40 Identities=38% Similarity=0.847 Sum_probs=30.9
Q ss_pred cccccccccCCcce-----------EEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce
Q 033690 38 SSLGMCKKCGDVGM-----------IACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF 102 (113)
Q Consensus 38 ~sL~mCk~Cggl~~-----------vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~ 102 (113)
+....|++|+|.++ +.|+.|+|+|.+.. -+|+.|.|+|..
T Consensus 181 ~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~-------------------------~~C~~C~G~g~~ 231 (389)
T PRK14295 181 TTPRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIAD-------------------------DPCLVCKGSGRA 231 (389)
T ss_pred CCCcCCCCCCCEeEEEEEecceEEEEecCCCcceeEEec-------------------------cCCCCCCCCceE
Confidence 34678999999876 47999999998742 258888888864
No 59
>PRK14278 chaperone protein DnaJ; Provisional
Probab=95.06 E-value=0.021 Score=47.60 Aligned_cols=39 Identities=31% Similarity=0.819 Sum_probs=30.0
Q ss_pred ccccccccCCcce---------------EEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce
Q 033690 39 SLGMCKKCGDVGM---------------IACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF 102 (113)
Q Consensus 39 sL~mCk~Cggl~~---------------vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~ 102 (113)
.-..|+.|+|.++ ..|+.|.|+|.+.. -+|+.|.|+|..
T Consensus 155 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~-------------------------~~C~~C~G~g~v 208 (378)
T PRK14278 155 KPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIP-------------------------DPCHECAGDGRV 208 (378)
T ss_pred CceecCCccCceEEEEEEeccceeEEEEEECCCCCccceeeC-------------------------CCCCCCCCceeE
Confidence 4567999999875 36999999998632 259999998864
No 60
>PRK14297 chaperone protein DnaJ; Provisional
Probab=95.05 E-value=0.02 Score=47.48 Aligned_cols=25 Identities=40% Similarity=1.004 Sum_probs=20.5
Q ss_pred cccccccCCcceE---------------EcCCCccceeee
Q 033690 40 LGMCKKCGDVGMI---------------ACSRCKGMGLIK 64 (113)
Q Consensus 40 L~mCk~Cggl~~v---------------aCsrCKGtG~Ik 64 (113)
...|+.|+|.+++ .|+.|.|+|.+.
T Consensus 165 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~ 204 (380)
T PRK14297 165 PKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVI 204 (380)
T ss_pred CccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEc
Confidence 4679999999865 699999999774
No 61
>PRK14281 chaperone protein DnaJ; Provisional
Probab=94.85 E-value=0.027 Score=47.18 Aligned_cols=39 Identities=31% Similarity=0.731 Sum_probs=30.4
Q ss_pred ccccccccCCcceE---------------EcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce
Q 033690 39 SLGMCKKCGDVGMI---------------ACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF 102 (113)
Q Consensus 39 sL~mCk~Cggl~~v---------------aCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~ 102 (113)
....|+.|+|.+++ .|+.|+|+|.+.. -+|+.|.|+|..
T Consensus 178 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~-------------------------~~C~~C~G~g~v 231 (397)
T PRK14281 178 ATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVK-------------------------DRCPACYGEGIK 231 (397)
T ss_pred CCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeC-------------------------CCCCCCCCCccE
Confidence 45689999998854 6999999998742 258888888864
No 62
>PRK14289 chaperone protein DnaJ; Provisional
Probab=94.77 E-value=0.024 Score=47.04 Aligned_cols=26 Identities=31% Similarity=0.786 Sum_probs=20.6
Q ss_pred ccccccccCCcceE---------------EcCCCccceeee
Q 033690 39 SLGMCKKCGDVGMI---------------ACSRCKGMGLIK 64 (113)
Q Consensus 39 sL~mCk~Cggl~~v---------------aCsrCKGtG~Ik 64 (113)
....|+.|+|.+++ .|+.|+|+|.+.
T Consensus 170 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~ 210 (386)
T PRK14289 170 GSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKII 210 (386)
T ss_pred CCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCcccccc
Confidence 35679999998776 699999998763
No 63
>PRK14291 chaperone protein DnaJ; Provisional
Probab=94.64 E-value=0.03 Score=46.58 Aligned_cols=38 Identities=42% Similarity=1.026 Sum_probs=30.1
Q ss_pred ccccccccCCcceE-----------EcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce
Q 033690 39 SLGMCKKCGDVGMI-----------ACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF 102 (113)
Q Consensus 39 sL~mCk~Cggl~~v-----------aCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~ 102 (113)
....|++|+|.+++ .|+.|+|+|.++ -+|++|.|+|..
T Consensus 172 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~--------------------------~~C~~C~G~g~v 220 (382)
T PRK14291 172 GEKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGVLR--------------------------EPCSKCNGRGLV 220 (382)
T ss_pred CCccCCCCCCceEEEEecceEEEEecCCCCCCceEEc--------------------------cCCCCCCCCceE
Confidence 35679999999875 799999999531 259999998865
No 64
>PRK14293 chaperone protein DnaJ; Provisional
Probab=94.64 E-value=0.03 Score=46.40 Aligned_cols=24 Identities=33% Similarity=1.010 Sum_probs=18.3
Q ss_pred cccccccCCcceE---------------EcCCCccceee
Q 033690 40 LGMCKKCGDVGMI---------------ACSRCKGMGLI 63 (113)
Q Consensus 40 L~mCk~Cggl~~v---------------aCsrCKGtG~I 63 (113)
...|+.|+|.+++ .|+.|.|+|.+
T Consensus 160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~ 198 (374)
T PRK14293 160 PTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQV 198 (374)
T ss_pred CeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeE
Confidence 3468888888864 48888888876
No 65
>PRK14283 chaperone protein DnaJ; Provisional
Probab=94.27 E-value=0.039 Score=45.78 Aligned_cols=24 Identities=38% Similarity=1.059 Sum_probs=19.3
Q ss_pred cccccccCCcceE---------------EcCCCccceee
Q 033690 40 LGMCKKCGDVGMI---------------ACSRCKGMGLI 63 (113)
Q Consensus 40 L~mCk~Cggl~~v---------------aCsrCKGtG~I 63 (113)
...|+.|+|.+++ .|+.|+|+|.+
T Consensus 163 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~ 201 (378)
T PRK14283 163 VKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKI 201 (378)
T ss_pred CccCCCcCCccEEEEEEeccCceEEEEEECCCCCcccee
Confidence 4679999998775 48889888876
No 66
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=93.94 E-value=0.038 Score=43.34 Aligned_cols=15 Identities=47% Similarity=1.105 Sum_probs=9.3
Q ss_pred eEEcCCCccceeeec
Q 033690 51 MIACSRCKGMGLIKS 65 (113)
Q Consensus 51 ~vaCsrCKGtG~Ik~ 65 (113)
...|++|.|+|.|-.
T Consensus 99 ~~~C~~C~G~G~~i~ 113 (186)
T TIGR02642 99 SCKCPRCRGTGLIQR 113 (186)
T ss_pred CCcCCCCCCeeEEec
Confidence 456677777666543
No 67
>PRK14287 chaperone protein DnaJ; Provisional
Probab=93.38 E-value=0.068 Score=44.45 Aligned_cols=26 Identities=35% Similarity=0.914 Sum_probs=20.4
Q ss_pred ccccccccCCcceE---------------EcCCCccceeee
Q 033690 39 SLGMCKKCGDVGMI---------------ACSRCKGMGLIK 64 (113)
Q Consensus 39 sL~mCk~Cggl~~v---------------aCsrCKGtG~Ik 64 (113)
....|+.|+|.+++ .|+.|.|+|.+.
T Consensus 154 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~ 194 (371)
T PRK14287 154 KPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKII 194 (371)
T ss_pred CCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccc
Confidence 45679999998764 699999988763
No 68
>PRK14292 chaperone protein DnaJ; Provisional
Probab=93.37 E-value=0.072 Score=43.94 Aligned_cols=38 Identities=34% Similarity=0.897 Sum_probs=29.1
Q ss_pred cccccccCCcceE---------------EcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce
Q 033690 40 LGMCKKCGDVGMI---------------ACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF 102 (113)
Q Consensus 40 L~mCk~Cggl~~v---------------aCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~ 102 (113)
...|+.|+|.+++ .|+.|.|+|.+. .-+|++|.|+|..
T Consensus 157 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------------------------~~~C~~C~G~g~v 209 (371)
T PRK14292 157 PKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQII-------------------------TDPCTVCRGRGRT 209 (371)
T ss_pred CccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceec-------------------------CCCCCCCCCceEE
Confidence 4679999998765 499999998762 2358888888864
No 69
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=93.15 E-value=0.051 Score=50.91 Aligned_cols=34 Identities=32% Similarity=0.800 Sum_probs=23.7
Q ss_pred EEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccc
Q 033690 52 IACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGH 101 (113)
Q Consensus 52 vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~ 101 (113)
-.|+.|+|.|.|+.+- .++.|+| ++|+.|+|+..
T Consensus 739 G~C~~C~G~G~~~~~~----~f~~~~~------------~~C~~C~G~R~ 772 (943)
T PRK00349 739 GRCEACQGDGVIKIEM----HFLPDVY------------VPCDVCKGKRY 772 (943)
T ss_pred CCCCcccccceEEEEe----ccCCCcc------------ccCccccCccc
Confidence 3477788888888553 3455654 58999998864
No 70
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.10 E-value=0.055 Score=50.62 Aligned_cols=33 Identities=30% Similarity=0.820 Sum_probs=22.4
Q ss_pred EcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccc
Q 033690 53 ACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGH 101 (113)
Q Consensus 53 aCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~ 101 (113)
.|+.|||.|.|+.+ ..+++|+ .++|+.|+|+..
T Consensus 738 ~C~~C~G~G~~~~~----~~f~~~~------------~~~C~~C~G~R~ 770 (924)
T TIGR00630 738 RCEACQGDGVIKIE----MHFLPDV------------YVPCEVCKGKRY 770 (924)
T ss_pred CCCCCccceEEEEE----ccCCCCc------------ccCCCCcCCcee
Confidence 46777777777754 2345554 568999999864
No 71
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.05 E-value=0.082 Score=46.08 Aligned_cols=60 Identities=27% Similarity=0.564 Sum_probs=36.1
Q ss_pred cccccccccCCcc--------eEEcCCCccceeeecCCccccccccccCC-CCCccccccceeeccCCCCccceeCCCCC
Q 033690 38 SSLGMCKKCGDVG--------MIACSRCKGMGLIKSNGLFGFSIMDELYP-PLDGAESQMKSIGCSKCKGRGHFCCPGCS 108 (113)
Q Consensus 38 ~sL~mCk~Cggl~--------~vaCsrCKGtG~Ik~gg~f~f~~~ddiye-s~g~~~~~~~~v~C~kCqgkG~~~CP~Cs 108 (113)
|--..|..|.+-| ++-|+.|-| .++. +.-+ |||-. =.| .-..+|+.|||+|..+|..|+
T Consensus 196 RG~~vc~gc~g~G~~~y~~~~~m~c~sc~G--~~~~-k~gt----~~~C~~C~G-----~G~~~C~tC~grG~k~C~TC~ 263 (406)
T KOG2813|consen 196 RGAMVCHGCSGSGSNSYGIGTPMHCMSCTG--VPPP-KIGT----HDLCYMCHG-----RGIKECHTCKGRGKKPCTTCS 263 (406)
T ss_pred CCceeccCcCCCCccccccCcceecccccC--CCCC-CCCc----cchhhhccC-----CCcccCCcccCCCCccccccc
Confidence 3345789999998 999999988 2211 1111 22211 011 114568888888888888886
Q ss_pred C
Q 033690 109 N 109 (113)
Q Consensus 109 k 109 (113)
.
T Consensus 264 g 264 (406)
T KOG2813|consen 264 G 264 (406)
T ss_pred C
Confidence 4
No 72
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=91.88 E-value=0.14 Score=43.56 Aligned_cols=58 Identities=29% Similarity=0.725 Sum_probs=38.8
Q ss_pred ccccccCCcc-----eEEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce-----eCCCCCCC
Q 033690 41 GMCKKCGDVG-----MIACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF-----CCPGCSNK 110 (113)
Q Consensus 41 ~mCk~Cggl~-----~vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~-----~CP~Csk~ 110 (113)
-.|.+|.+.+ .-.|+.|.|+|.-..--..+=+| ..+-+..|.+|.|.|.. .||.|.+.
T Consensus 128 ~iCs~C~GsGgksg~~~~C~~C~GsGv~~~~~~~gPg~------------~qs~q~~C~~C~G~G~~~~~kd~C~~C~G~ 195 (337)
T KOG0712|consen 128 FICSKCSGSGGKSGSAPKCTTCRGSGVQTRTRQMGPGM------------VQSPQLVCDSCNGSGETISLKDRCKTCSGA 195 (337)
T ss_pred ccCCcCCCCCCCCCCCCCCCCCCCCCceeEEEeccccc------------cccceeEeccCCCccccccccccCcccccc
Confidence 3566666543 22488888888664433333222 33447889999999999 99999764
No 73
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=89.55 E-value=0.2 Score=50.27 Aligned_cols=34 Identities=24% Similarity=0.419 Sum_probs=26.6
Q ss_pred EEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccc
Q 033690 52 IACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGH 101 (113)
Q Consensus 52 vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~ 101 (113)
-.|+.|||.|.|+.+= .||+|+ .++|+.|+|+.+
T Consensus 1608 GrC~~C~G~G~i~i~m----~fl~dv------------~~~C~~C~G~R~ 1641 (1809)
T PRK00635 1608 GQCSDCWGLGYQWIDR----AFYALE------------KRPCPTCSGFRI 1641 (1809)
T ss_pred CCCCCCccCceEEEec----ccCCCc------------ccCCCCCCCcCC
Confidence 3588899999998773 467888 458999999865
No 74
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=89.51 E-value=0.19 Score=46.52 Aligned_cols=38 Identities=29% Similarity=0.627 Sum_probs=25.9
Q ss_pred hcccchhhHHhhhhhcccccccccCCcceE----EcCCCccceeeec
Q 033690 23 IAAPKLDAFFSASQRSSLGMCKKCGDVGMI----ACSRCKGMGLIKS 65 (113)
Q Consensus 23 iaa~kvd~fi~~sqr~sL~mCk~Cggl~~v----aCsrCKGtG~Ik~ 65 (113)
++-.-||.|.+- -.-|++|.+.|.| .|+.|-|+|.|-.
T Consensus 41 ~~~~~~D~~~~~-----~~pc~~c~gkG~V~v~~~c~~c~G~gkv~~ 82 (715)
T COG1107 41 LSRETVDLFASF-----EIPCPKCRGKGTVTVYDTCPECGGTGKVLT 82 (715)
T ss_pred hhhccccccccC-----CCCCCeeccceeEEEEeecccCCCceeEEe
Confidence 344456666431 3578888888876 5888888888743
No 75
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=85.99 E-value=0.43 Score=39.10 Aligned_cols=40 Identities=18% Similarity=0.309 Sum_probs=27.0
Q ss_pred chhhHHhhhhhccccccc---ccCCcceEEcCCCccceeeecC
Q 033690 27 KLDAFFSASQRSSLGMCK---KCGDVGMIACSRCKGMGLIKSN 66 (113)
Q Consensus 27 kvd~fi~~sqr~sL~mCk---~Cggl~~vaCsrCKGtG~Ik~g 66 (113)
|-|...+..-|++..+|- +-.|..-+.||.|+|+|+|.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~py~e~~g~~~vtCPTCqGtGrIP~e 53 (238)
T PF07092_consen 11 KAASYLSERGSKEDISSFPYVEFTGRDSVTCPTCQGTGRIPRE 53 (238)
T ss_pred cchhhhccCCcccccccCccccccCCCCCcCCCCcCCccCCcc
Confidence 334444444455554444 4567788999999999999776
No 76
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=84.57 E-value=0.82 Score=26.95 Aligned_cols=16 Identities=19% Similarity=0.569 Sum_probs=11.3
Q ss_pred eEEcCCCccceeeecC
Q 033690 51 MIACSRCKGMGLIKSN 66 (113)
Q Consensus 51 ~vaCsrCKGtG~Ik~g 66 (113)
.|.||.|...-+|...
T Consensus 2 ~i~CP~C~~~f~v~~~ 17 (37)
T PF13719_consen 2 IITCPNCQTRFRVPDD 17 (37)
T ss_pred EEECCCCCceEEcCHH
Confidence 4788888877666544
No 77
>KOG2907 consensus RNA polymerase I transcription factor TFIIS, subunit A12.2/RPA12 [Transcription]
Probab=83.46 E-value=0.63 Score=34.91 Aligned_cols=73 Identities=21% Similarity=0.469 Sum_probs=43.0
Q ss_pred ccccccccCCc-------ceEEcCCCccceeeecC--CccccccccccCCCCCccc--------cccceeeccCCCCcc-
Q 033690 39 SLGMCKKCGDV-------GMIACSRCKGMGLIKSN--GLFGFSIMDELYPPLDGAE--------SQMKSIGCSKCKGRG- 100 (113)
Q Consensus 39 sL~mCk~Cggl-------~~vaCsrCKGtG~Ik~g--g~f~f~~~ddiyes~g~~~--------~~~~~v~C~kCqgkG- 100 (113)
+|.-|..||.+ ..+.|.+||-.=.++.- --..+..+.+.|.+.-.+. .+.=..+||+|+--.
T Consensus 6 ~~~FC~~CG~ll~~~~~~~~~~C~~Ck~~~~v~~~~~~~v~~~~~~~~~~~A~~~~ve~~~~~~ga~I~~kCpkCghe~m 85 (116)
T KOG2907|consen 6 DLDFCSDCGSLLEEPSAQSTVLCIRCKIEYPVSQFSGLVVETKSLFDEFTSALAEKVENESSADGAVIKHKCPKCGHEEM 85 (116)
T ss_pred CcchhhhhhhhcccccccCceEeccccccCCHHHhCCeeEEEEEeecccchhhhhhhcccccccccchhccCcccCCchh
Confidence 88999999986 46779999976544221 1111112223333322211 233345699998654
Q ss_pred ----------------ceeCCCCCCCC
Q 033690 101 ----------------HFCCPGCSNKP 111 (113)
Q Consensus 101 ----------------~~~CP~Csk~~ 111 (113)
.+.||+|+.|.
T Consensus 86 ~Y~T~QlRSADEGQTVFYTC~kC~~k~ 112 (116)
T KOG2907|consen 86 SYHTLQLRSADEGQTVFYTCPKCKYKF 112 (116)
T ss_pred hhhhhhcccccCCceEEEEcCccceee
Confidence 47899998774
No 78
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=82.81 E-value=0.87 Score=25.64 Aligned_cols=10 Identities=40% Similarity=0.926 Sum_probs=7.2
Q ss_pred cceeCCCCCC
Q 033690 100 GHFCCPGCSN 109 (113)
Q Consensus 100 G~~~CP~Csk 109 (113)
-.|.||+|++
T Consensus 15 v~f~CPnCG~ 24 (24)
T PF07754_consen 15 VPFPCPNCGF 24 (24)
T ss_pred ceEeCCCCCC
Confidence 3688888874
No 79
>TIGR01384 TFS_arch transcription factor S, archaeal. There has been an apparent duplication event in the Halobacteriaceae lineage (Haloarcula, Haloferax, Haloquadratum, Halobacterium and Natromonas). There appears to be a separate duplication in Methanosphaera stadtmanae.
Probab=82.20 E-value=2.8 Score=28.52 Aligned_cols=22 Identities=32% Similarity=0.815 Sum_probs=15.2
Q ss_pred cccccCCc-----ceEEcCCCccceee
Q 033690 42 MCKKCGDV-----GMIACSRCKGMGLI 63 (113)
Q Consensus 42 mCk~Cggl-----~~vaCsrCKGtG~I 63 (113)
.|++||++ ..+.|+.|.-.-.+
T Consensus 2 fC~~Cg~~l~~~~~~~~C~~C~~~~~~ 28 (104)
T TIGR01384 2 FCPKCGSLMTPKNGVYVCPSCGYEKEK 28 (104)
T ss_pred CCcccCcccccCCCeEECcCCCCcccc
Confidence 47777764 46789888866444
No 80
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=81.75 E-value=0.66 Score=38.01 Aligned_cols=16 Identities=31% Similarity=0.823 Sum_probs=13.5
Q ss_pred cceeeccCCCCcccee
Q 033690 88 MKSIGCSKCKGRGHFC 103 (113)
Q Consensus 88 ~~~v~C~kCqgkG~~~ 103 (113)
...++||.|||.|++|
T Consensus 36 ~~~vtCPTCqGtGrIP 51 (238)
T PF07092_consen 36 RDSVTCPTCQGTGRIP 51 (238)
T ss_pred CCCCcCCCCcCCccCC
Confidence 4678999999999986
No 81
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=81.31 E-value=1.4 Score=26.02 Aligned_cols=32 Identities=28% Similarity=0.672 Sum_probs=19.7
Q ss_pred eEEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCC
Q 033690 51 MIACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKG 98 (113)
Q Consensus 51 ~vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqg 98 (113)
.|.|++|+..=.|... ... ++...+.|++|+-
T Consensus 2 ~i~Cp~C~~~y~i~d~----------~ip------~~g~~v~C~~C~~ 33 (36)
T PF13717_consen 2 IITCPNCQAKYEIDDE----------KIP------PKGRKVRCSKCGH 33 (36)
T ss_pred EEECCCCCCEEeCCHH----------HCC------CCCcEEECCCCCC
Confidence 4788999876655443 222 3334778888863
No 82
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=74.69 E-value=3.1 Score=23.77 Aligned_cols=16 Identities=25% Similarity=0.457 Sum_probs=10.7
Q ss_pred eEEcCCCccceeeecC
Q 033690 51 MIACSRCKGMGLIKSN 66 (113)
Q Consensus 51 ~vaCsrCKGtG~Ik~g 66 (113)
++.||+|...=+|...
T Consensus 2 ~~~CP~C~~~~~v~~~ 17 (38)
T TIGR02098 2 RIQCPNCKTSFRVVDS 17 (38)
T ss_pred EEECCCCCCEEEeCHH
Confidence 3678888877665543
No 83
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=73.70 E-value=2.8 Score=24.62 Aligned_cols=7 Identities=29% Similarity=0.785 Sum_probs=4.1
Q ss_pred eCCCCCC
Q 033690 103 CCPGCSN 109 (113)
Q Consensus 103 ~CP~Csk 109 (113)
-|++|+.
T Consensus 23 ~C~~Cg~ 29 (33)
T PF08792_consen 23 VCIFCGS 29 (33)
T ss_pred EcccCCc
Confidence 5666654
No 84
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=73.63 E-value=2.2 Score=41.03 Aligned_cols=34 Identities=26% Similarity=0.660 Sum_probs=24.7
Q ss_pred EEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccc
Q 033690 52 IACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGH 101 (113)
Q Consensus 52 vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~ 101 (113)
-.|..|+|-|.|+..=. ||.|+ -++|+-|+|+=+
T Consensus 731 GRCe~C~GdG~ikIeM~----FLpdV------------yv~CevC~GkRY 764 (935)
T COG0178 731 GRCEACQGDGVIKIEMH----FLPDV------------YVPCEVCHGKRY 764 (935)
T ss_pred cCCccccCCceEEEEec----cCCCc------------eeeCCCcCCccc
Confidence 46888888888887743 56666 468888888743
No 85
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=68.64 E-value=3.3 Score=39.18 Aligned_cols=29 Identities=31% Similarity=0.670 Sum_probs=24.0
Q ss_pred hhcccccccccCCcceE------------EcCCCccceeee
Q 033690 36 QRSSLGMCKKCGDVGMI------------ACSRCKGMGLIK 64 (113)
Q Consensus 36 qr~sL~mCk~Cggl~~v------------aCsrCKGtG~Ik 64 (113)
-++-.|+|+.|+|.|.+ .|+.|.|.+-.+
T Consensus 732 fN~~~G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~~ 772 (924)
T TIGR00630 732 FNVKGGRCEACQGDGVIKIEMHFLPDVYVPCEVCKGKRYNR 772 (924)
T ss_pred CCCCCCCCCCCccceEEEEEccCCCCcccCCCCcCCceeCh
Confidence 34456999999999977 599999999763
No 86
>PF03811 Zn_Tnp_IS1: InsA N-terminal domain; InterPro: IPR003220 Insertion elements are mobile elements in DNA, usually encoding proteins required for transposition, for example transposases. Protein InsA is absolutely required for transposition of insertion element 1. This entry represents a short zinc binding domain found in IS1 InsA family protein. It is found at the N terminus of the protein and may be a DNA-binding domain.; GO: 0006313 transposition, DNA-mediated
Probab=67.40 E-value=6.9 Score=23.41 Aligned_cols=19 Identities=32% Similarity=0.621 Sum_probs=16.0
Q ss_pred eEEcCCCccceeeecCCcc
Q 033690 51 MIACSRCKGMGLIKSNGLF 69 (113)
Q Consensus 51 ~vaCsrCKGtG~Ik~gg~f 69 (113)
.|.||+|..+-.|+++|.-
T Consensus 5 ~v~CP~C~s~~~v~k~G~~ 23 (36)
T PF03811_consen 5 DVHCPRCQSTEGVKKNGKS 23 (36)
T ss_pred eeeCCCCCCCCcceeCCCC
Confidence 4789999999988888874
No 87
>PRK14892 putative transcription elongation factor Elf1; Provisional
Probab=66.74 E-value=5.1 Score=28.75 Aligned_cols=24 Identities=21% Similarity=0.538 Sum_probs=17.7
Q ss_pred cccceeeccCCC----------CccceeCCCCCC
Q 033690 86 SQMKSIGCSKCK----------GRGHFCCPGCSN 109 (113)
Q Consensus 86 ~~~~~v~C~kCq----------gkG~~~CP~Csk 109 (113)
...+.+.||.|. ++++..||.|+-
T Consensus 17 klpt~f~CP~Cge~~v~v~~~k~~~h~~C~~CG~ 50 (99)
T PRK14892 17 KLPKIFECPRCGKVSISVKIKKNIAIITCGNCGL 50 (99)
T ss_pred CCCcEeECCCCCCeEeeeecCCCcceEECCCCCC
Confidence 345677888887 456888999964
No 88
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=61.99 E-value=3.8 Score=30.91 Aligned_cols=24 Identities=33% Similarity=0.548 Sum_probs=19.9
Q ss_pred CchhhhhhhhhhHHHhhhhhcccc
Q 033690 4 LTASEVAGFGVGTVLLCATIAAPK 27 (113)
Q Consensus 4 ~t~seiagf~vg~lll~atiaa~k 27 (113)
||..-+|||++|.||.+.+.||-+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~ 25 (135)
T TIGR03096 2 ITKAMFAGFALGLLLMGTAQAAEQ 25 (135)
T ss_pred hhHHHhHHHHHHHhhccchhhccc
Confidence 577789999999888888887754
No 89
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=61.96 E-value=9.6 Score=33.14 Aligned_cols=46 Identities=22% Similarity=0.654 Sum_probs=29.6
Q ss_pred ccccccCCcceEEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccc--eeCCCCCC
Q 033690 41 GMCKKCGDVGMIACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGH--FCCPGCSN 109 (113)
Q Consensus 41 ~mCk~Cggl~~vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~--~~CP~Csk 109 (113)
.+|.+||- .+.|+.|-+.=+..+ ..+...|.-|--+-. ..||+|+.
T Consensus 214 ~~C~~Cg~--~~~C~~C~~~l~~h~---------------------~~~~l~Ch~Cg~~~~~~~~Cp~C~s 261 (505)
T TIGR00595 214 LLCRSCGY--ILCCPNCDVSLTYHK---------------------KEGKLRCHYCGYQEPIPKTCPQCGS 261 (505)
T ss_pred eEhhhCcC--ccCCCCCCCceEEec---------------------CCCeEEcCCCcCcCCCCCCCCCCCC
Confidence 58999986 467999955433322 223567888866654 35888865
No 90
>PF14353 CpXC: CpXC protein
Probab=61.93 E-value=3 Score=29.29 Aligned_cols=49 Identities=16% Similarity=0.226 Sum_probs=25.7
Q ss_pred EEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce
Q 033690 52 IACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF 102 (113)
Q Consensus 52 vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~ 102 (113)
|.||.|.....++.-..+--..=-++-|.+- +.+-..+.||.|..+.++
T Consensus 2 itCP~C~~~~~~~v~~~I~~~~~p~l~e~il--~g~l~~~~CP~Cg~~~~~ 50 (128)
T PF14353_consen 2 ITCPHCGHEFEFEVWTSINADEDPELKEKIL--DGSLFSFTCPSCGHKFRL 50 (128)
T ss_pred cCCCCCCCeeEEEEEeEEcCcCCHHHHHHHH--cCCcCEEECCCCCCceec
Confidence 6788898887775443221000001111111 344557888888877664
No 91
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=61.07 E-value=15 Score=30.99 Aligned_cols=90 Identities=20% Similarity=0.306 Sum_probs=48.8
Q ss_pred hhhhhhhhhHHHhhhhhcccchhhHHhhhhhcccccccccCCc--------------ceEEcCCCccceee---ecCCcc
Q 033690 7 SEVAGFGVGTVLLCATIAAPKLDAFFSASQRSSLGMCKKCGDV--------------GMIACSRCKGMGLI---KSNGLF 69 (113)
Q Consensus 7 seiagf~vg~lll~atiaa~kvd~fi~~sqr~sL~mCk~Cggl--------------~~vaCsrCKGtG~I---k~gg~f 69 (113)
++.|=|...||.+--+.-|..+|+=--.......+.|+-||.. |...|+.|--.=.. +.-...
T Consensus 154 ~~~a~Fi~AALqv~wa~~a~~l~~~~~~~~~~~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg 233 (309)
T PRK03564 154 SDKAPFIWAALSLYWAQMAQQIPGKARAEYGEQRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCE 233 (309)
T ss_pred hhHHHHHHHHHHHHHHHHHhhCCcccccccccCCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccccCccCCCCC
Confidence 4556677778887777666666532222222245788888754 44556666543222 211111
Q ss_pred ccccccccCCCCCccccccceeeccCCCC
Q 033690 70 GFSIMDELYPPLDGAESQMKSIGCSKCKG 98 (113)
Q Consensus 70 ~f~~~ddiyes~g~~~~~~~~v~C~kCqg 98 (113)
.-+ +--|-++..+....+.-.|.+|++
T Consensus 234 ~~~--~l~y~~~~~~~~~~r~e~C~~C~~ 260 (309)
T PRK03564 234 QSG--KLHYWSLDSEQAAVKAESCGDCGT 260 (309)
T ss_pred CCC--ceeeeeecCCCcceEeeecccccc
Confidence 100 112444555455677788888875
No 92
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=61.04 E-value=5.2 Score=37.95 Aligned_cols=30 Identities=30% Similarity=0.654 Sum_probs=23.5
Q ss_pred hhcccccccccCCcceE------------EcCCCccceeeec
Q 033690 36 QRSSLGMCKKCGDVGMI------------ACSRCKGMGLIKS 65 (113)
Q Consensus 36 qr~sL~mCk~Cggl~~v------------aCsrCKGtG~Ik~ 65 (113)
.+..-++|++|+|.|.+ .|+.|.|++-...
T Consensus 734 ~N~~~G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~~e 775 (943)
T PRK00349 734 FNVKGGRCEACQGDGVIKIEMHFLPDVYVPCDVCKGKRYNRE 775 (943)
T ss_pred CCCCCCCCCcccccceEEEEeccCCCccccCccccCcccccc
Confidence 34445789999999876 5999999997643
No 93
>PHA00626 hypothetical protein
Probab=60.61 E-value=6.5 Score=26.56 Aligned_cols=20 Identities=15% Similarity=0.439 Sum_probs=12.7
Q ss_pred eeeccCCCC-ccceeCCCCCC
Q 033690 90 SIGCSKCKG-RGHFCCPGCSN 109 (113)
Q Consensus 90 ~v~C~kCqg-kG~~~CP~Csk 109 (113)
.++|..|+. +.++.||+|+-
T Consensus 11 Ivrcg~cr~~snrYkCkdCGY 31 (59)
T PHA00626 11 IAKEKTMRGWSDDYVCCDCGY 31 (59)
T ss_pred eeeeceecccCcceEcCCCCC
Confidence 345555666 67777777764
No 94
>PRK04023 DNA polymerase II large subunit; Validated
Probab=60.47 E-value=8.6 Score=37.80 Aligned_cols=46 Identities=22% Similarity=0.490 Sum_probs=32.0
Q ss_pred cccccccCCc-ceEEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccc-eeCCCCCCCC
Q 033690 40 LGMCKKCGDV-GMIACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGH-FCCPGCSNKP 111 (113)
Q Consensus 40 L~mCk~Cggl-~~vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~-~~CP~Csk~~ 111 (113)
.-.|+.||-. -...|+.|... +...+.|++|..... ..||+|+.++
T Consensus 626 ~RfCpsCG~~t~~frCP~CG~~--------------------------Te~i~fCP~CG~~~~~y~CPKCG~El 673 (1121)
T PRK04023 626 RRKCPSCGKETFYRRCPFCGTH--------------------------TEPVYRCPRCGIEVEEDECEKCGREP 673 (1121)
T ss_pred CccCCCCCCcCCcccCCCCCCC--------------------------CCcceeCccccCcCCCCcCCCCCCCC
Confidence 3579999877 44568888654 112457999977664 7799998765
No 95
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=60.27 E-value=13 Score=31.13 Aligned_cols=87 Identities=22% Similarity=0.342 Sum_probs=45.8
Q ss_pred hhhhhhhHHHhhhhhcccchhhHHhhhhhcccccccccCCc---------------ceEEcCCCccceee---ecCCccc
Q 033690 9 VAGFGVGTVLLCATIAAPKLDAFFSASQRSSLGMCKKCGDV---------------GMIACSRCKGMGLI---KSNGLFG 70 (113)
Q Consensus 9 iagf~vg~lll~atiaa~kvd~fi~~sqr~sL~mCk~Cggl---------------~~vaCsrCKGtG~I---k~gg~f~ 70 (113)
.+=|...||=+-.+.-|..+|.=-......+.+.|+-||.. |...|+.|-..=.+ +.-....
T Consensus 153 ~apfi~AALq~~~~~~a~~l~~~~~~~~~~~~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 232 (305)
T TIGR01562 153 LVPFLGAALQVAWAHWALGLEGGAVVETRESRTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEE 232 (305)
T ss_pred hhHHHHHHHHHHHHHHHHhCCccccCcccCCCCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 34465555555555555555532222334566789999754 45567777543332 2221111
Q ss_pred ccccccc-CCCCCc--cccccceeeccCCCC
Q 033690 71 FSIMDEL-YPPLDG--AESQMKSIGCSKCKG 98 (113)
Q Consensus 71 f~~~ddi-yes~g~--~~~~~~~v~C~kCqg 98 (113)
-++| |-++.. ++...+.-.|.+|++
T Consensus 233 ---~~~l~y~~~e~~~~~~~~r~e~C~~C~~ 260 (305)
T TIGR01562 233 ---SKHLAYLSLEHDAEKAVLKAETCDSCQG 260 (305)
T ss_pred ---CCceeeEeecCCCCCcceEEeecccccc
Confidence 0122 333433 456677888999976
No 96
>PRK00432 30S ribosomal protein S27ae; Validated
Probab=58.61 E-value=5.1 Score=25.33 Aligned_cols=19 Identities=21% Similarity=0.711 Sum_probs=14.7
Q ss_pred eeeccCCCC------ccceeCCCCC
Q 033690 90 SIGCSKCKG------RGHFCCPGCS 108 (113)
Q Consensus 90 ~v~C~kCqg------kG~~~CP~Cs 108 (113)
..-||+|.. .+++.|++|+
T Consensus 20 ~~fCP~Cg~~~m~~~~~r~~C~~Cg 44 (50)
T PRK00432 20 NKFCPRCGSGFMAEHLDRWHCGKCG 44 (50)
T ss_pred cCcCcCCCcchheccCCcEECCCcC
Confidence 345999966 5788999996
No 97
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=58.47 E-value=6.9 Score=35.79 Aligned_cols=20 Identities=25% Similarity=0.846 Sum_probs=14.9
Q ss_pred eccCCCCc---cceeCCCCCCCC
Q 033690 92 GCSKCKGR---GHFCCPGCSNKP 111 (113)
Q Consensus 92 ~C~kCqgk---G~~~CP~Csk~~ 111 (113)
+|++|-.. |-.-||+|+.+.
T Consensus 29 ~Cp~CG~~~~~~~~fC~~CG~~~ 51 (645)
T PRK14559 29 PCPQCGTEVPVDEAHCPNCGAET 51 (645)
T ss_pred cCCCCCCCCCcccccccccCCcc
Confidence 58888654 666899998764
No 98
>PRK07220 DNA topoisomerase I; Validated
Probab=57.14 E-value=15 Score=33.61 Aligned_cols=18 Identities=28% Similarity=0.660 Sum_probs=12.6
Q ss_pred eeccCCCC-------cc----ceeCCCCC
Q 033690 91 IGCSKCKG-------RG----HFCCPGCS 108 (113)
Q Consensus 91 v~C~kCqg-------kG----~~~CP~Cs 108 (113)
..||+|.. +| .+.||.|+
T Consensus 636 ~~Cp~Cg~~~~k~~~~g~~~~~~~Cp~C~ 664 (740)
T PRK07220 636 KVCEAHGLNHIRIINGGKRPWDLGCPQCN 664 (740)
T ss_pred CCCCCCCCceEEEEecCCccceeeCCCCC
Confidence 47999952 23 36899996
No 99
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=55.00 E-value=5.3 Score=34.20 Aligned_cols=45 Identities=29% Similarity=0.529 Sum_probs=29.5
Q ss_pred ccccccCCcceEEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCC
Q 033690 41 GMCKKCGDVGMIACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCK 97 (113)
Q Consensus 41 ~mCk~Cggl~~vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCq 97 (113)
-.|..|.-++...|-|||-. |-||--.+-|-.-.+.+.+|||||.
T Consensus 172 ~KC~SCNrlGq~sCLRCK~c------------fCddHvrrKg~ky~k~k~~PCPKCg 216 (314)
T PF06524_consen 172 FKCQSCNRLGQYSCLRCKIC------------FCDDHVRRKGFKYEKGKPIPCPKCG 216 (314)
T ss_pred ccccccccccchhhhheeee------------ehhhhhhhcccccccCCCCCCCCCC
Confidence 57999999999999999953 1222222222223455688888885
No 100
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=54.76 E-value=12 Score=22.42 Aligned_cols=8 Identities=25% Similarity=0.945 Sum_probs=3.6
Q ss_pred eeeccCCC
Q 033690 90 SIGCSKCK 97 (113)
Q Consensus 90 ~v~C~kCq 97 (113)
.+.||.|.
T Consensus 21 ~~~Cp~CG 28 (46)
T PRK00398 21 GVRCPYCG 28 (46)
T ss_pred ceECCCCC
Confidence 34455443
No 101
>PRK14873 primosome assembly protein PriA; Provisional
Probab=53.95 E-value=18 Score=32.96 Aligned_cols=49 Identities=24% Similarity=0.601 Sum_probs=32.0
Q ss_pred ccccccccCCcceEEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCC-ccceeCCCCCCC
Q 033690 39 SLGMCKKCGDVGMIACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKG-RGHFCCPGCSNK 110 (113)
Q Consensus 39 sL~mCk~Cggl~~vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqg-kG~~~CP~Csk~ 110 (113)
...+|.+||- ...|++|-+.=+..++. +...|.-|-- .-...||+|+..
T Consensus 382 p~l~C~~Cg~--~~~C~~C~~~L~~h~~~---------------------~~l~Ch~CG~~~~p~~Cp~Cgs~ 431 (665)
T PRK14873 382 PSLACARCRT--PARCRHCTGPLGLPSAG---------------------GTPRCRWCGRAAPDWRCPRCGSD 431 (665)
T ss_pred CeeEhhhCcC--eeECCCCCCceeEecCC---------------------CeeECCCCcCCCcCccCCCCcCC
Confidence 4479999996 57899998765543321 2556777743 235578888653
No 102
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=51.43 E-value=9.2 Score=25.45 Aligned_cols=12 Identities=25% Similarity=0.714 Sum_probs=7.9
Q ss_pred ccccccCCcceE
Q 033690 41 GMCKKCGDVGMI 52 (113)
Q Consensus 41 ~mCk~Cggl~~v 52 (113)
.+|+-||++.++
T Consensus 5 i~CP~CgnKTR~ 16 (55)
T PF14205_consen 5 ILCPICGNKTRL 16 (55)
T ss_pred EECCCCCCccce
Confidence 467777776653
No 103
>COG3677 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=51.33 E-value=11 Score=27.59 Aligned_cols=31 Identities=26% Similarity=0.468 Sum_probs=19.8
Q ss_pred hhHHhhhhhcccccccccCCcceEEcCCCccceeeecCCc
Q 033690 29 DAFFSASQRSSLGMCKKCGDVGMIACSRCKGMGLIKSNGL 68 (113)
Q Consensus 29 d~fi~~sqr~sL~mCk~Cggl~~vaCsrCKGtG~Ik~gg~ 68 (113)
+++++..+|-. ..++.||.|+-.=.++.|+.
T Consensus 17 ~~~~~~~~~~~---------~~~~~cP~C~s~~~~k~g~~ 47 (129)
T COG3677 17 LADAAYAIRMQ---------ITKVNCPRCKSSNVVKIGGI 47 (129)
T ss_pred HHHHHHHHhhh---------cccCcCCCCCccceeeECCc
Confidence 45566666643 45678999999884444433
No 104
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=51.17 E-value=9.9 Score=22.53 Aligned_cols=10 Identities=50% Similarity=1.501 Sum_probs=5.1
Q ss_pred ccceeCCCCC
Q 033690 99 RGHFCCPGCS 108 (113)
Q Consensus 99 kG~~~CP~Cs 108 (113)
+|-+-|++|+
T Consensus 17 ~g~~vC~~CG 26 (43)
T PF08271_consen 17 RGELVCPNCG 26 (43)
T ss_dssp TTEEEETTT-
T ss_pred CCeEECCCCC
Confidence 3555666664
No 105
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=51.01 E-value=11 Score=26.78 Aligned_cols=22 Identities=23% Similarity=0.687 Sum_probs=15.4
Q ss_pred ceeeccCCCCcc-----ceeCCCCCCC
Q 033690 89 KSIGCSKCKGRG-----HFCCPGCSNK 110 (113)
Q Consensus 89 ~~v~C~kCqgkG-----~~~CP~Csk~ 110 (113)
-+..|.+|+-.- .+.||.|+..
T Consensus 69 ~~~~C~~Cg~~~~~~~~~~~CP~Cgs~ 95 (115)
T TIGR00100 69 VECECEDCSEEVSPEIDLYRCPKCHGI 95 (115)
T ss_pred cEEEcccCCCEEecCCcCccCcCCcCC
Confidence 356799997543 4669999754
No 106
>PF04438 zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the HIT-type zinc finger, which contains 7 conserved cysteines and one histidine that can potentially coordinate two zinc atoms. It has been named after the first protein that originally defined the domain: the yeast HIT1 protein (P46973 from SWISSPROT) []. The HIT-type zinc finger displays some sequence similarities to the MYND-type zinc finger. The function of this domain is unknown but it is mainly found in nuclear proteins involved in gene regulation and chromatin remodeling. This domain is also found in the thyroid receptor interacting protein 3 (TRIP-3) Q15649 from SWISSPROT, that specifically interacts with the ligand binding domain of the thyroid receptor. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2YQP_A 2YQQ_A 1X4S_A.
Probab=50.29 E-value=10 Score=21.78 Aligned_cols=20 Identities=30% Similarity=0.863 Sum_probs=14.3
Q ss_pred eeccCCCCccceeCCCCCCC
Q 033690 91 IGCSKCKGRGHFCCPGCSNK 110 (113)
Q Consensus 91 v~C~kCqgkG~~~CP~Csk~ 110 (113)
..|.-|...++..||+|+..
T Consensus 3 ~~C~vC~~~~kY~Cp~C~~~ 22 (30)
T PF04438_consen 3 KLCSVCGNPAKYRCPRCGAR 22 (30)
T ss_dssp EEETSSSSEESEE-TTT--E
T ss_pred CCCccCcCCCEEECCCcCCc
Confidence 45888999999999999753
No 107
>PF08646 Rep_fac-A_C: Replication factor-A C terminal domain; InterPro: IPR013955 Replication factor A (RP-A) binds and subsequently stabilises single-stranded DNA intermediates and thus prevents complementary DNA from reannealing. It also plays an essential role in several cellular processes in DNA metabolism including replication, recombination and repair of DNA []. Replication factor-A protein is also known as Replication protein A 70 kDa DNA-binding subunit. This entry is found at the C terminus of Replication factor A.; PDB: 1L1O_F 3U50_C.
Probab=50.13 E-value=9 Score=27.31 Aligned_cols=21 Identities=29% Similarity=0.912 Sum_probs=13.4
Q ss_pred eeecc--CCCCc------cceeCCCCCCC
Q 033690 90 SIGCS--KCKGR------GHFCCPGCSNK 110 (113)
Q Consensus 90 ~v~C~--kCqgk------G~~~CP~Csk~ 110 (113)
-..|| +|+.| |.+.|++|++.
T Consensus 18 Y~aC~~~~C~kKv~~~~~~~y~C~~C~~~ 46 (146)
T PF08646_consen 18 YPACPNEKCNKKVTENGDGSYRCEKCNKT 46 (146)
T ss_dssp EEE-TSTTTS-B-EEETTTEEEETTTTEE
T ss_pred ECCCCCccCCCEeecCCCcEEECCCCCCc
Confidence 34588 88775 67888888754
No 108
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=50.11 E-value=13 Score=26.56 Aligned_cols=24 Identities=21% Similarity=0.505 Sum_probs=16.4
Q ss_pred ccceeeccCCCCc-----cceeCCCCCCC
Q 033690 87 QMKSIGCSKCKGR-----GHFCCPGCSNK 110 (113)
Q Consensus 87 ~~~~v~C~kCqgk-----G~~~CP~Csk~ 110 (113)
-+-+..|.+|... -.+.||.|+..
T Consensus 67 vp~~~~C~~Cg~~~~~~~~~~~CP~Cgs~ 95 (113)
T PRK12380 67 KPAQAWCWDCSQVVEIHQHDAQCPHCHGE 95 (113)
T ss_pred eCcEEEcccCCCEEecCCcCccCcCCCCC
Confidence 3446679999863 34569999853
No 109
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=48.65 E-value=16 Score=36.56 Aligned_cols=45 Identities=24% Similarity=0.620 Sum_probs=29.4
Q ss_pred ccccccCCcc-eEEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCc------cceeCCCCCCCC
Q 033690 41 GMCKKCGDVG-MIACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGR------GHFCCPGCSNKP 111 (113)
Q Consensus 41 ~mCk~Cggl~-~vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgk------G~~~CP~Csk~~ 111 (113)
-.|++||... ...|+.|...- .....|++|... +...||+|+.+.
T Consensus 668 rkCPkCG~~t~~~fCP~CGs~t--------------------------e~vy~CPsCGaev~~des~a~~CP~CGtpl 719 (1337)
T PRK14714 668 RRCPSCGTETYENRCPDCGTHT--------------------------EPVYVCPDCGAEVPPDESGRVECPRCDVEL 719 (1337)
T ss_pred EECCCCCCccccccCcccCCcC--------------------------CCceeCccCCCccCCCccccccCCCCCCcc
Confidence 5799998742 34788885441 114579999874 244799998653
No 110
>PRK00762 hypA hydrogenase nickel incorporation protein; Provisional
Probab=48.56 E-value=10 Score=27.41 Aligned_cols=21 Identities=38% Similarity=0.839 Sum_probs=14.6
Q ss_pred cceeeccCCCCcc------------ceeCCCCCC
Q 033690 88 MKSIGCSKCKGRG------------HFCCPGCSN 109 (113)
Q Consensus 88 ~~~v~C~kCqgkG------------~~~CP~Csk 109 (113)
.-+..| +|+... .+.||.|+.
T Consensus 68 p~~~~C-~Cg~~~~~~~~~~~~~~~~~~CP~Cgs 100 (124)
T PRK00762 68 PVEIEC-ECGYEGVVDEDEIDHYAAVIECPVCGN 100 (124)
T ss_pred CeeEEe-eCcCcccccccchhccccCCcCcCCCC
Confidence 335669 998661 167999974
No 111
>KOG4216 consensus Steroid hormone nuclear receptor [Transcription]
Probab=48.35 E-value=8.4 Score=34.65 Aligned_cols=23 Identities=48% Similarity=0.918 Sum_probs=19.3
Q ss_pred ccccccCCc------ceEEcCCCccceee
Q 033690 41 GMCKKCGDV------GMIACSRCKGMGLI 63 (113)
Q Consensus 41 ~mCk~Cggl------~~vaCsrCKGtG~I 63 (113)
+-||-|||+ |.|.|-+|||-=|=
T Consensus 47 IPCKiCGDKSSGiHYGVITCEGCKGFFRR 75 (479)
T KOG4216|consen 47 IPCKICGDKSSGIHYGVITCEGCKGFFRR 75 (479)
T ss_pred EeeeeccCCCCcceeeeEeeccchHhhhh
Confidence 789999997 78999999995433
No 112
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=47.45 E-value=11 Score=27.03 Aligned_cols=22 Identities=18% Similarity=0.519 Sum_probs=14.7
Q ss_pred cceeeccCCCCc------cceeCCCCCC
Q 033690 88 MKSIGCSKCKGR------GHFCCPGCSN 109 (113)
Q Consensus 88 ~~~v~C~kCqgk------G~~~CP~Csk 109 (113)
.-+..|.+|+-. ..+.||.|+.
T Consensus 69 p~~~~C~~Cg~~~~~~~~~~~~CP~Cgs 96 (117)
T PRK00564 69 KVELECKDCSHVFKPNALDYGVCEKCHS 96 (117)
T ss_pred CCEEEhhhCCCccccCCccCCcCcCCCC
Confidence 335669999743 3335999975
No 113
>cd04476 RPA1_DBD_C RPA1_DBD_C: A subfamily of OB folds corresponding to the C-terminal OB fold, the ssDNA-binding domain (DBD)-C, of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-C, RPA1 contains three other OB folds: DBD-A, DBD-B, and RPA1N. The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B. RPA1 DBD-C is involved in DNA binding and trimerization. It contains two structural insertions not found to date in other OB-folds: a zinc ribbon and a three-helix bundle. RPA1 DBD-C also contains a Cys4-type zinc-binding motif, which plays a role in the ssDNA binding fun
Probab=47.05 E-value=12 Score=27.17 Aligned_cols=20 Identities=25% Similarity=0.916 Sum_probs=14.3
Q ss_pred eeccCCCCc------cceeCCCCCCC
Q 033690 91 IGCSKCKGR------GHFCCPGCSNK 110 (113)
Q Consensus 91 v~C~kCqgk------G~~~CP~Csk~ 110 (113)
..||+|+-| |.+.|+.|++.
T Consensus 35 ~aC~~C~kkv~~~~~~~~~C~~C~~~ 60 (166)
T cd04476 35 PACPGCNKKVVEEGNGTYRCEKCNKS 60 (166)
T ss_pred ccccccCcccEeCCCCcEECCCCCCc
Confidence 358888755 56788888775
No 114
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=45.65 E-value=14 Score=26.27 Aligned_cols=25 Identities=24% Similarity=0.527 Sum_probs=16.7
Q ss_pred cccceeeccCCCCc------cceeCCCCCCC
Q 033690 86 SQMKSIGCSKCKGR------GHFCCPGCSNK 110 (113)
Q Consensus 86 ~~~~~v~C~kCqgk------G~~~CP~Csk~ 110 (113)
..+-+..|.+|+.. ..+.||.|+..
T Consensus 66 ~~p~~~~C~~Cg~~~~~~~~~~~~CP~Cgs~ 96 (114)
T PRK03681 66 EQEAECWCETCQQYVTLLTQRVRRCPQCHGD 96 (114)
T ss_pred eeCcEEEcccCCCeeecCCccCCcCcCcCCC
Confidence 33446679999754 23679999753
No 115
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=45.58 E-value=8.9 Score=32.86 Aligned_cols=28 Identities=21% Similarity=0.812 Sum_probs=23.6
Q ss_pred cccccCCcceE-----EcCCCccceeeecCCcc
Q 033690 42 MCKKCGDVGMI-----ACSRCKGMGLIKSNGLF 69 (113)
Q Consensus 42 mCk~Cggl~~v-----aCsrCKGtG~Ik~gg~f 69 (113)
.|..|++.+.+ .|+.|+|++.++....+
T Consensus 172 ~C~~C~G~G~~~~~kd~C~~C~G~~~v~~kkil 204 (337)
T KOG0712|consen 172 VCDSCNGSGETISLKDRCKTCSGAKVVREKKIL 204 (337)
T ss_pred EeccCCCccccccccccCcccccchhhhhhhee
Confidence 59999999999 99999999999665543
No 116
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=45.26 E-value=14 Score=27.00 Aligned_cols=10 Identities=20% Similarity=0.773 Sum_probs=6.1
Q ss_pred ceeeccCCCC
Q 033690 89 KSIGCSKCKG 98 (113)
Q Consensus 89 ~~v~C~kCqg 98 (113)
-.+.|.+|+-
T Consensus 69 ~~~~C~~CG~ 78 (135)
T PRK03824 69 AVLKCRNCGN 78 (135)
T ss_pred eEEECCCCCC
Confidence 4566777763
No 117
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=45.22 E-value=12 Score=31.94 Aligned_cols=25 Identities=44% Similarity=0.933 Sum_probs=21.3
Q ss_pred ccccccCCcceEEcCCCccceeeecCCc
Q 033690 41 GMCKKCGDVGMIACSRCKGMGLIKSNGL 68 (113)
Q Consensus 41 ~mCk~Cggl~~vaCsrCKGtG~Ik~gg~ 68 (113)
..|..|++.+ |+-||++|-|.-.|.
T Consensus 261 v~~~~~~g~g---c~~ck~~~WiEilG~ 285 (339)
T PRK00488 261 VSCFKCGGKG---CRVCKGTGWLEILGC 285 (339)
T ss_pred EEEeccCCCc---ccccCCCCceEEecc
Confidence 7899999876 999999999976654
No 118
>cd00296 SIR2 SIR2 superfamily of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer. Also included in this superfamily is a group of uncharacterized Sir2-like proteins which lack certain key catalytic
Probab=44.68 E-value=12 Score=27.86 Aligned_cols=36 Identities=19% Similarity=0.517 Sum_probs=23.0
Q ss_pred ccccCCCCCccc-------cccceeeccCCCCc----------cceeCCCCCC
Q 033690 74 MDELYPPLDGAE-------SQMKSIGCSKCKGR----------GHFCCPGCSN 109 (113)
Q Consensus 74 ~ddiyes~g~~~-------~~~~~v~C~kCqgk----------G~~~CP~Csk 109 (113)
+|+|+|.+|.+. .......|.+|.-. ..-.||.|+.
T Consensus 90 iD~L~~~ag~~~~~v~~lHG~~~~~~C~~C~~~~~~~~~~~~~~~p~C~~C~~ 142 (222)
T cd00296 90 VDGLHERAGSRRNRVIELHGSLDRVRCTSCGKEYPRDEVLEREKPPRCPKCGG 142 (222)
T ss_pred hHHHHHHhCCCcCcEEEecCCCCccEECCCCCCcchhhhhhccCCCCCCCCCC
Confidence 377888777541 23344568888643 3467999976
No 119
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=44.01 E-value=19 Score=32.95 Aligned_cols=20 Identities=30% Similarity=0.617 Sum_probs=13.1
Q ss_pred eeccCCCCccc-eeCCCCCCC
Q 033690 91 IGCSKCKGRGH-FCCPGCSNK 110 (113)
Q Consensus 91 v~C~kCqgkG~-~~CP~Csk~ 110 (113)
.-|++|..+-. ..||+|+..
T Consensus 16 kFC~~CG~~l~~~~Cp~CG~~ 36 (645)
T PRK14559 16 RFCQKCGTSLTHKPCPQCGTE 36 (645)
T ss_pred ccccccCCCCCCCcCCCCCCC
Confidence 34788866633 568888765
No 120
>cd01411 SIR2H SIR2H: Uncharacterized prokaryotic Sir2 homologs from several gram positive bacterial species and Fusobacteria; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=43.93 E-value=18 Score=28.09 Aligned_cols=36 Identities=17% Similarity=0.290 Sum_probs=22.7
Q ss_pred ccccCCCCCcc-----ccccceeeccCCCCccc-------eeCCCCCC
Q 033690 74 MDELYPPLDGA-----ESQMKSIGCSKCKGRGH-------FCCPGCSN 109 (113)
Q Consensus 74 ~ddiyes~g~~-----~~~~~~v~C~kCqgkG~-------~~CP~Csk 109 (113)
+|+|++.+|.+ -.......|.+|...-. -.||+|+.
T Consensus 97 vD~Lh~~aG~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~p~C~~Cgg 144 (225)
T cd01411 97 IDGLHQKAGSKNVVEFHGSLYRIYCTVCGKTVDWEEYLKSPYHAKCGG 144 (225)
T ss_pred cchhhhhcCCCcEEEeCCCcCeeEeCCCCCccchhhcCCCCCCCCCCC
Confidence 47777777743 23345567999954321 46999974
No 121
>smart00778 Prim_Zn_Ribbon Zinc-binding domain of primase-helicase. This region represents the zinc binding domain. It is found in the N-terminal region of the bacteriophage P4 alpha protein, which is a multifunctional protein with origin recognition, helicase and primase activities.
Probab=43.58 E-value=13 Score=22.50 Aligned_cols=15 Identities=27% Similarity=0.620 Sum_probs=9.0
Q ss_pred eeeccCCCCccceeC
Q 033690 90 SIGCSKCKGRGHFCC 104 (113)
Q Consensus 90 ~v~C~kCqgkG~~~C 104 (113)
..|||.|-|+.+|+-
T Consensus 3 ~~pCP~CGG~DrFr~ 17 (37)
T smart00778 3 HGPCPNCGGSDRFRF 17 (37)
T ss_pred ccCCCCCCCcccccc
Confidence 456777766665543
No 122
>PRK11712 ribonuclease G; Provisional
Probab=42.86 E-value=5.2 Score=35.40 Aligned_cols=28 Identities=29% Similarity=0.582 Sum_probs=23.8
Q ss_pred EEcCCCccceeeecCCccccccccccCC
Q 033690 52 IACSRCKGMGLIKSNGLFGFSIMDELYP 79 (113)
Q Consensus 52 vaCsrCKGtG~Ik~gg~f~f~~~ddiye 79 (113)
..||.|+|+|.|++-..+.+.++.+|.+
T Consensus 403 ~~Cp~C~G~G~v~s~e~~~~~i~r~i~~ 430 (489)
T PRK11712 403 GECPTCHGRGTVKTVETVCYEIMREIVR 430 (489)
T ss_pred CCCCCCCCCCCcCCHHHHHHHHHHHHHH
Confidence 5799999999999988888888777754
No 123
>TIGR00155 pqiA_fam integral membrane protein, PqiA family. This family consists of uncharacterized predicted integral membrane proteins found, so far, only in the Proteobacteria. Of two members in E. coli, one is induced by paraquat and is designated PqiA, paraquat-inducible protein A.
Probab=42.04 E-value=21 Score=30.53 Aligned_cols=24 Identities=33% Similarity=0.732 Sum_probs=16.5
Q ss_pred ccceeeccCCCC----ccceeCCCCCCC
Q 033690 87 QMKSIGCSKCKG----RGHFCCPGCSNK 110 (113)
Q Consensus 87 ~~~~v~C~kCqg----kG~~~CP~Csk~ 110 (113)
.+..+.|+.|.- ...-.||+|+..
T Consensus 212 ~~~~~~C~~Cd~~~~~~~~a~CpRC~~~ 239 (403)
T TIGR00155 212 PLKLRSCSACHTTILPAQEPVCPRCSTP 239 (403)
T ss_pred ccCCCcCCCCCCccCCCCCcCCcCCCCc
Confidence 345667888875 345679999754
No 124
>PRK00420 hypothetical protein; Validated
Probab=41.86 E-value=18 Score=26.59 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=17.7
Q ss_pred ceeeccCCCC------ccceeCCCCCCCCC
Q 033690 89 KSIGCSKCKG------RGHFCCPGCSNKPQ 112 (113)
Q Consensus 89 ~~v~C~kCqg------kG~~~CP~Csk~~~ 112 (113)
-...||.|.. .|..-||.|++-..
T Consensus 22 l~~~CP~Cg~pLf~lk~g~~~Cp~Cg~~~~ 51 (112)
T PRK00420 22 LSKHCPVCGLPLFELKDGEVVCPVHGKVYI 51 (112)
T ss_pred ccCCCCCCCCcceecCCCceECCCCCCeee
Confidence 3467888875 58888999987543
No 125
>PF05123 S_layer_N: S-layer like family, N-terminal region ; InterPro: IPR022650 This entry represents the N-terminal domain of archael S-layer proteins. Members of this family are found in (for example) Pyrococcus horikoshii (split into two tandem reading frames), Methanocaldococcus jannaschii (Methanococcus jannaschii), and related species. Some local similarity can be found to other S-layer protein families. This entry is found in association with PF05124 from PFAM
Probab=41.64 E-value=9.4 Score=32.14 Aligned_cols=24 Identities=21% Similarity=0.432 Sum_probs=18.4
Q ss_pred hhhhhhhHHHhhhhh-----cccc---hhhHH
Q 033690 9 VAGFGVGTVLLCATI-----AAPK---LDAFF 32 (113)
Q Consensus 9 iagf~vg~lll~ati-----aa~k---vd~fi 32 (113)
||-++||++++++|+ |++| |+.|.
T Consensus 3 I~aiavG~amvgsal~~~~~A~~~vg~v~~f~ 34 (290)
T PF05123_consen 3 IGAIAVGGAMVGSALASGVFAQEKVGDVPKFK 34 (290)
T ss_pred eEEEEecHHHHHHHhhhhhhhhhhcCCcchhh
Confidence 677888888888887 6777 77754
No 126
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=40.69 E-value=14 Score=20.11 Aligned_cols=20 Identities=30% Similarity=0.846 Sum_probs=11.7
Q ss_pred eeccCCCCc---cceeCCCCCCC
Q 033690 91 IGCSKCKGR---GHFCCPGCSNK 110 (113)
Q Consensus 91 v~C~kCqgk---G~~~CP~Csk~ 110 (113)
+.||+|... +-.-||.|+.+
T Consensus 3 ~~Cp~Cg~~~~~~~~fC~~CG~~ 25 (26)
T PF13248_consen 3 MFCPNCGAEIDPDAKFCPNCGAK 25 (26)
T ss_pred CCCcccCCcCCcccccChhhCCC
Confidence 456666543 44557777654
No 127
>PF08273 Prim_Zn_Ribbon: Zinc-binding domain of primase-helicase; InterPro: IPR013237 This entry is represented by bacteriophage T7 Gp4. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a zinc binding domain found in the N-terminal region of the bacteriophage T7 Gp4 and P4 alpha protein. P4 is a multifunctional protein with origin recognition, helicase and primase activities [, , ].; GO: 0003896 DNA primase activity, 0004386 helicase activity, 0008270 zinc ion binding; PDB: 1NUI_B.
Probab=40.44 E-value=17 Score=22.26 Aligned_cols=15 Identities=33% Similarity=0.709 Sum_probs=8.9
Q ss_pred ceeeccCCCCcccee
Q 033690 89 KSIGCSKCKGRGHFC 103 (113)
Q Consensus 89 ~~v~C~kCqgkG~~~ 103 (113)
+..|||.|-|+.+|+
T Consensus 2 ~h~pCP~CGG~DrFr 16 (40)
T PF08273_consen 2 KHGPCPICGGKDRFR 16 (40)
T ss_dssp EEE--TTTT-TTTEE
T ss_pred CCCCCCCCcCccccc
Confidence 356888888887776
No 128
>KOG4846 consensus Nuclear receptor [Signal transduction mechanisms]
Probab=40.27 E-value=12 Score=33.99 Aligned_cols=23 Identities=52% Similarity=1.136 Sum_probs=19.5
Q ss_pred ccccccCCc------ceEEcCCCcc--ceee
Q 033690 41 GMCKKCGDV------GMIACSRCKG--MGLI 63 (113)
Q Consensus 41 ~mCk~Cggl------~~vaCsrCKG--tG~I 63 (113)
..||-|||+ |..+|.+||| .++|
T Consensus 133 ~lCkVCgDkASGfHYGV~aCEGCKGFFRRSI 163 (538)
T KOG4846|consen 133 SLCKVCGDKASGFHYGVTACEGCKGFFRRSI 163 (538)
T ss_pred EeehhhccccccceeceeecccchHHHHHHH
Confidence 679999997 7899999999 4555
No 129
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=40.12 E-value=14 Score=26.12 Aligned_cols=23 Identities=26% Similarity=0.710 Sum_probs=13.8
Q ss_pred cceeeccCCCCcc-----ceeCCCCCCC
Q 033690 88 MKSIGCSKCKGRG-----HFCCPGCSNK 110 (113)
Q Consensus 88 ~~~v~C~kCqgkG-----~~~CP~Csk~ 110 (113)
+-...|.+|.... .+.||.|+..
T Consensus 68 p~~~~C~~Cg~~~~~~~~~~~CP~Cgs~ 95 (113)
T PF01155_consen 68 PARARCRDCGHEFEPDEFDFSCPRCGSP 95 (113)
T ss_dssp --EEEETTTS-EEECHHCCHH-SSSSSS
T ss_pred CCcEECCCCCCEEecCCCCCCCcCCcCC
Confidence 3356699998755 3779999764
No 130
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=39.66 E-value=18 Score=21.07 Aligned_cols=17 Identities=29% Similarity=0.968 Sum_probs=7.8
Q ss_pred eccCCCCc------cceeCCCCC
Q 033690 92 GCSKCKGR------GHFCCPGCS 108 (113)
Q Consensus 92 ~C~kCqgk------G~~~CP~Cs 108 (113)
+|++|++- ..+-||+|+
T Consensus 4 ~Cp~C~se~~y~D~~~~vCp~C~ 26 (30)
T PF08274_consen 4 KCPLCGSEYTYEDGELLVCPECG 26 (30)
T ss_dssp --TTT-----EE-SSSEEETTTT
T ss_pred CCCCCCCcceeccCCEEeCCccc
Confidence 46666553 456677775
No 131
>PRK05580 primosome assembly protein PriA; Validated
Probab=39.49 E-value=35 Score=30.84 Aligned_cols=48 Identities=23% Similarity=0.686 Sum_probs=29.5
Q ss_pred cccccccCCcceEEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccc--eeCCCCCCC
Q 033690 40 LGMCKKCGDVGMIACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGH--FCCPGCSNK 110 (113)
Q Consensus 40 L~mCk~Cggl~~vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~--~~CP~Csk~ 110 (113)
..+|.+||-. +.|+.|-+.=+..+ ..+...|.-|-.+-. ..||+|+..
T Consensus 381 ~~~C~~Cg~~--~~C~~C~~~l~~h~---------------------~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~ 430 (679)
T PRK05580 381 FLLCRDCGWV--AECPHCDASLTLHR---------------------FQRRLRCHHCGYQEPIPKACPECGST 430 (679)
T ss_pred ceEhhhCcCc--cCCCCCCCceeEEC---------------------CCCeEECCCCcCCCCCCCCCCCCcCC
Confidence 3678888854 56888866322222 123567888876653 368888653
No 132
>COG1998 RPS31 Ribosomal protein S27AE [Translation, ribosomal structure and biogenesis]
Probab=39.47 E-value=19 Score=23.72 Aligned_cols=24 Identities=25% Similarity=0.679 Sum_probs=16.3
Q ss_pred hcccccccccCC-------cceEEcCCCccc
Q 033690 37 RSSLGMCKKCGD-------VGMIACSRCKGM 60 (113)
Q Consensus 37 r~sL~mCk~Cgg-------l~~vaCsrCKGt 60 (113)
+|--.+|++||. ..+.+|.+|-=|
T Consensus 16 ~rk~~~CPrCG~gvfmA~H~dR~~CGkCgyT 46 (51)
T COG1998 16 KRKNRFCPRCGPGVFMADHKDRWACGKCGYT 46 (51)
T ss_pred EEccccCCCCCCcchhhhcCceeEeccccce
Confidence 344568999983 457788888544
No 133
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=39.27 E-value=18 Score=27.07 Aligned_cols=24 Identities=25% Similarity=0.486 Sum_probs=18.0
Q ss_pred cccceeeccCCCCcc--------ceeCCCCCC
Q 033690 86 SQMKSIGCSKCKGRG--------HFCCPGCSN 109 (113)
Q Consensus 86 ~~~~~v~C~kCqgkG--------~~~CP~Csk 109 (113)
..+.---||.|..|= .|.||.|+.
T Consensus 105 ~~~~~Y~Cp~c~~r~tf~eA~~~~F~Cp~Cg~ 136 (158)
T TIGR00373 105 TNNMFFICPNMCVRFTFNEAMELNFTCPRCGA 136 (158)
T ss_pred cCCCeEECCCCCcEeeHHHHHHcCCcCCCCCC
Confidence 344556699998663 699999986
No 134
>PF04236 Transp_Tc5_C: Tc5 transposase C-terminal domain; InterPro: IPR007350 This domain corresponds to a C-terminal cysteine rich region that probably binds to a metal ion and could be DNA-binding. It is found in association with the DDE superfamily (IPR004875 from INTERPRO) and the Tc5 transposase family (IPR004906 from INTERPRO). More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=38.93 E-value=22 Score=23.62 Aligned_cols=24 Identities=29% Similarity=0.797 Sum_probs=19.6
Q ss_pred hcccccccc--cCCcceEEcCCCccc
Q 033690 37 RSSLGMCKK--CGDVGMIACSRCKGM 60 (113)
Q Consensus 37 r~sL~mCk~--Cggl~~vaCsrCKGt 60 (113)
+..-.-|.. |+...+|-|+.||-.
T Consensus 24 ~~~~~~C~~~gC~~~s~I~C~~Ckk~ 49 (63)
T PF04236_consen 24 KNVAGDCDITGCNNTSFIRCAYCKKS 49 (63)
T ss_pred CCCcCcCCCCCCCCcCEEEccccCCc
Confidence 445577888 999999999999853
No 135
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=38.72 E-value=12 Score=18.76 Aligned_cols=9 Identities=33% Similarity=1.099 Sum_probs=6.8
Q ss_pred eeCCCCCCC
Q 033690 102 FCCPGCSNK 110 (113)
Q Consensus 102 ~~CP~Csk~ 110 (113)
|.||.|++.
T Consensus 1 y~C~~C~~~ 9 (23)
T PF00096_consen 1 YKCPICGKS 9 (23)
T ss_dssp EEETTTTEE
T ss_pred CCCCCCCCc
Confidence 578888864
No 136
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=38.09 E-value=29 Score=19.48 Aligned_cols=10 Identities=30% Similarity=0.850 Sum_probs=5.9
Q ss_pred ceeeccCCCC
Q 033690 89 KSIGCSKCKG 98 (113)
Q Consensus 89 ~~v~C~kCqg 98 (113)
..+.||+|.+
T Consensus 25 ~~~~CP~Cg~ 34 (41)
T smart00834 25 PLATCPECGG 34 (41)
T ss_pred CCCCCCCCCC
Confidence 3555666655
No 137
>PF14599 zinc_ribbon_6: Zinc-ribbon; PDB: 2K2D_A.
Probab=38.02 E-value=19 Score=23.80 Aligned_cols=20 Identities=25% Similarity=0.722 Sum_probs=11.1
Q ss_pred ceeeccCCCCccc-------eeCCCCC
Q 033690 89 KSIGCSKCKGRGH-------FCCPGCS 108 (113)
Q Consensus 89 ~~v~C~kCqgkG~-------~~CP~Cs 108 (113)
-.|-|.||..+.. +.|+.|+
T Consensus 29 v~IlCNDC~~~s~v~fH~lg~KC~~C~ 55 (61)
T PF14599_consen 29 VWILCNDCNAKSEVPFHFLGHKCSHCG 55 (61)
T ss_dssp EEEEESSS--EEEEE--TT----TTTS
T ss_pred EEEECCCCCCccceeeeHhhhcCCCCC
Confidence 4567999999873 5688875
No 138
>PRK14811 formamidopyrimidine-DNA glycosylase; Provisional
Probab=37.73 E-value=23 Score=28.46 Aligned_cols=15 Identities=40% Similarity=0.941 Sum_probs=10.8
Q ss_pred CccceeCCCCCCCCC
Q 033690 98 GRGHFCCPGCSNKPQ 112 (113)
Q Consensus 98 gkG~~~CP~Csk~~~ 112 (113)
||+-+-||.|++.|.
T Consensus 252 gR~ty~Cp~CQ~~~~ 266 (269)
T PRK14811 252 GRGTHFCPQCQPLRP 266 (269)
T ss_pred CCCcEECCCCcCCCC
Confidence 467777888877764
No 139
>PRK11827 hypothetical protein; Provisional
Probab=37.36 E-value=15 Score=24.34 Aligned_cols=12 Identities=42% Similarity=1.035 Sum_probs=9.0
Q ss_pred cceEEcCCCccc
Q 033690 49 VGMIACSRCKGM 60 (113)
Q Consensus 49 l~~vaCsrCKGt 60 (113)
+.+++||.|||.
T Consensus 6 LeILaCP~ckg~ 17 (60)
T PRK11827 6 LEIIACPVCNGK 17 (60)
T ss_pred HhheECCCCCCc
Confidence 346789999885
No 140
>COG3809 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.21 E-value=22 Score=25.61 Aligned_cols=20 Identities=40% Similarity=1.057 Sum_probs=13.2
Q ss_pred ccccccC---------CcceEEcCCCccc
Q 033690 41 GMCKKCG---------DVGMIACSRCKGM 60 (113)
Q Consensus 41 ~mCk~Cg---------gl~~vaCsrCKGt 60 (113)
-||+.|+ |+-+--||||.|.
T Consensus 2 llCP~C~v~l~~~~rs~vEiD~CPrCrGV 30 (88)
T COG3809 2 LLCPICGVELVMSVRSGVEIDYCPRCRGV 30 (88)
T ss_pred cccCcCCceeeeeeecCceeeeCCccccE
Confidence 3667775 4455568888875
No 141
>COG1530 CafA Ribonucleases G and E [Translation, ribosomal structure and biogenesis]
Probab=36.95 E-value=19 Score=31.62 Aligned_cols=25 Identities=32% Similarity=0.450 Sum_probs=20.7
Q ss_pred cceEEcCCCccceeeecCCcccccc
Q 033690 49 VGMIACSRCKGMGLIKSNGLFGFSI 73 (113)
Q Consensus 49 l~~vaCsrCKGtG~Ik~gg~f~f~~ 73 (113)
.....||.|+|+|.|+..-.+.+..
T Consensus 393 ~~~~~cp~c~G~g~v~~~~~~~~~i 417 (487)
T COG1530 393 VLSERCPGCKGTGHVRSTESELLHI 417 (487)
T ss_pred eeeeECCCceeeEEEecCchhhhhh
Confidence 4467899999999999988877663
No 142
>COG4023 SBH1 Preprotein translocase subunit Sec61beta [Intracellular trafficking and secretion]
Probab=36.87 E-value=23 Score=23.73 Aligned_cols=18 Identities=39% Similarity=0.619 Sum_probs=15.7
Q ss_pred hhhhhhhHHHhhhhhccc
Q 033690 9 VAGFGVGTVLLCATIAAP 26 (113)
Q Consensus 9 iagf~vg~lll~atiaa~ 26 (113)
.|||+|+.||+.|-|-+|
T Consensus 39 ~~~~av~~lvi~A~~f~p 56 (57)
T COG4023 39 YAGIAVAILVIAAHIFAP 56 (57)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 589999999999988766
No 143
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=36.18 E-value=34 Score=25.83 Aligned_cols=11 Identities=27% Similarity=0.510 Sum_probs=7.4
Q ss_pred eeeccCCCCcc
Q 033690 90 SIGCSKCKGRG 100 (113)
Q Consensus 90 ~v~C~kCqgkG 100 (113)
..|||+|.+..
T Consensus 130 l~~Cp~C~~~~ 140 (146)
T PF07295_consen 130 LPPCPKCGHTE 140 (146)
T ss_pred CCCCCCCCCCe
Confidence 56787777653
No 144
>TIGR00757 RNaseEG ribonuclease, Rne/Rng family. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome.
Probab=35.57 E-value=18 Score=31.23 Aligned_cols=18 Identities=28% Similarity=0.846 Sum_probs=14.5
Q ss_pred EEcCCCccceeeecCCcc
Q 033690 52 IACSRCKGMGLIKSNGLF 69 (113)
Q Consensus 52 vaCsrCKGtG~Ik~gg~f 69 (113)
..||.|+|+|.|++-..+
T Consensus 391 ~~Cp~C~G~G~v~s~~~~ 408 (414)
T TIGR00757 391 TVCPHCSGTGIVKTSETV 408 (414)
T ss_pred CCCCCCcCeeEEccHHHH
Confidence 579999999999876543
No 145
>PRK14973 DNA topoisomerase I; Provisional
Probab=35.52 E-value=42 Score=32.11 Aligned_cols=19 Identities=32% Similarity=0.532 Sum_probs=13.4
Q ss_pred eeccCCCC-------ccc---e-eCCCCCC
Q 033690 91 IGCSKCKG-------RGH---F-CCPGCSN 109 (113)
Q Consensus 91 v~C~kCqg-------kG~---~-~CP~Csk 109 (113)
.+||+|-. +|+ | -||+|..
T Consensus 636 ~~Cp~CG~p~~~~~r~Gr~g~fl~CP~C~~ 665 (936)
T PRK14973 636 EVCPIHHLNHVRLIRKGARPWDIGCPLCSH 665 (936)
T ss_pred CCCCCCCCCceEEeecCCCcccccCccccc
Confidence 37999995 344 3 4999964
No 146
>PF13824 zf-Mss51: Zinc-finger of mitochondrial splicing suppressor 51
Probab=34.88 E-value=23 Score=23.31 Aligned_cols=17 Identities=41% Similarity=1.069 Sum_probs=12.6
Q ss_pred ccCCCC----ccceeCCCCCC
Q 033690 93 CSKCKG----RGHFCCPGCSN 109 (113)
Q Consensus 93 C~kCqg----kG~~~CP~Csk 109 (113)
||-|.. +-.|.||+|+=
T Consensus 2 Cpv~~~~~~~~v~~~Cp~cGi 22 (55)
T PF13824_consen 2 CPVCKKDLPAHVNFECPDCGI 22 (55)
T ss_pred CCCCccccccccCCcCCCCCC
Confidence 666666 77888999873
No 147
>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family. Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.
Probab=34.77 E-value=34 Score=21.10 Aligned_cols=13 Identities=31% Similarity=0.728 Sum_probs=9.3
Q ss_pred eeeccCCCCccce
Q 033690 90 SIGCSKCKGRGHF 102 (113)
Q Consensus 90 ~v~C~kCqgkG~~ 102 (113)
.+.|++|.+.|..
T Consensus 26 ~~~C~~Cga~~~~ 38 (53)
T TIGR03655 26 YFECSTCGASGPV 38 (53)
T ss_pred EEECCCCCCCccc
Confidence 3478888887754
No 148
>PF01753 zf-MYND: MYND finger; InterPro: IPR002893 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MYND-type zinc finger domains. The MYND domain (myeloid, Nervy, and DEAF-1) is present in a large group of proteins that includes RP-8 (PDCD2), Nervy, and predicted proteins from Drosophila, mammals, Caenorhabditis elegans, yeast, and plants [, , ]. The MYND domain consists of a cluster of cysteine and histidine residues, arranged with an invariant spacing to form a potential zinc-binding motif []. Mutating conserved cysteine residues in the DEAF-1 MYND domain does not abolish DNA binding, which suggests that the MYND domain might be involved in protein-protein interactions []. Indeed, the MYND domain of ETO/MTG8 interacts directly with the N-CoR and SMRT co-repressors [, ]. Aberrant recruitment of co-repressor complexes and inappropriate transcriptional repression is believed to be a general mechanism of leukemogenesis caused by the t(8;21) translocations that fuse ETO with the acute myelogenous leukemia 1 (AML1) protein. ETO has been shown to be a co-repressor recruited by the promyelocytic leukemia zinc finger (PLZF) protein []. A divergent MYND domain present in the adenovirus E1A binding protein BS69 was also shown to interact with N-CoR and mediate transcriptional repression []. The current evidence suggests that the MYND motif in mammalian proteins constitutes a protein-protein interaction domain that functions as a co-repressor-recruiting interface. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3QWW_A 3QWV_A 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3RU0_A ....
Probab=34.12 E-value=29 Score=19.72 Aligned_cols=18 Identities=44% Similarity=1.145 Sum_probs=10.1
Q ss_pred ccccCCcceEEcCCCccc
Q 033690 43 CKKCGDVGMIACSRCKGM 60 (113)
Q Consensus 43 Ck~Cggl~~vaCsrCKGt 60 (113)
|..|+......|++|+.+
T Consensus 1 C~~C~~~~~~~C~~C~~~ 18 (37)
T PF01753_consen 1 CAVCGKPALKRCSRCKSV 18 (37)
T ss_dssp -TTTSSCSSEEETTTSSS
T ss_pred CcCCCCCcCCcCCCCCCE
Confidence 344555555577777543
No 149
>PTZ00408 NAD-dependent deacetylase; Provisional
Probab=33.39 E-value=29 Score=27.55 Aligned_cols=35 Identities=14% Similarity=0.296 Sum_probs=22.4
Q ss_pred ccccCCCCCcc-----ccccceeeccCCCCcc---------ceeCCCCC
Q 033690 74 MDELYPPLDGA-----ESQMKSIGCSKCKGRG---------HFCCPGCS 108 (113)
Q Consensus 74 ~ddiyes~g~~-----~~~~~~v~C~kCqgkG---------~~~CP~Cs 108 (113)
+|.|+|.+|.. -.....+.|++|.-.= ...||.|+
T Consensus 96 iDgLh~~AG~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~p~C~~Cg 144 (242)
T PTZ00408 96 VDNLHERAGSTHVLHMHGELLKVRCTATGHVFDWTEDVVHGSSRCKCCG 144 (242)
T ss_pred ccchhhHcCCCcEEEecCccceEEECCCCcccCchhhhhcCCCccccCC
Confidence 47777777743 2334557799997431 24599997
No 150
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=33.27 E-value=35 Score=20.48 Aligned_cols=10 Identities=30% Similarity=1.119 Sum_probs=6.0
Q ss_pred cceeCCCCCC
Q 033690 100 GHFCCPGCSN 109 (113)
Q Consensus 100 G~~~CP~Csk 109 (113)
+.+.|.+|.+
T Consensus 36 ~~~~C~~C~~ 45 (46)
T PF12760_consen 36 GRYRCKACRK 45 (46)
T ss_pred CeEECCCCCC
Confidence 5666666654
No 151
>COG1571 Predicted DNA-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=33.24 E-value=23 Score=31.40 Aligned_cols=19 Identities=37% Similarity=1.081 Sum_probs=15.3
Q ss_pred eccCCC------CccceeCCCCCCC
Q 033690 92 GCSKCK------GRGHFCCPGCSNK 110 (113)
Q Consensus 92 ~C~kCq------gkG~~~CP~Csk~ 110 (113)
.||.|- |++.|.||+|+.+
T Consensus 352 ~Cp~Cg~~m~S~G~~g~rC~kCg~~ 376 (421)
T COG1571 352 VCPRCGGRMKSAGRNGFRCKKCGTR 376 (421)
T ss_pred CCCccCCchhhcCCCCccccccccc
Confidence 499995 4567999999865
No 152
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=33.14 E-value=56 Score=30.66 Aligned_cols=49 Identities=22% Similarity=0.653 Sum_probs=33.0
Q ss_pred ccccccccCCcceEEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCc--cceeCCCCCCC
Q 033690 39 SLGMCKKCGDVGMIACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGR--GHFCCPGCSNK 110 (113)
Q Consensus 39 sL~mCk~Cggl~~vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgk--G~~~CP~Csk~ 110 (113)
.+.||++||- ...|+.|-..=+.- ...+...|--|--. =...||+|+..
T Consensus 434 ~~l~C~~Cg~--v~~Cp~Cd~~lt~H---------------------~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~ 484 (730)
T COG1198 434 PLLLCRDCGY--IAECPNCDSPLTLH---------------------KATGQLRCHYCGYQEPIPQSCPECGSE 484 (730)
T ss_pred ceeecccCCC--cccCCCCCcceEEe---------------------cCCCeeEeCCCCCCCCCCCCCCCCCCC
Confidence 4589999996 57899996542222 22247778888554 45679999754
No 153
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=33.05 E-value=33 Score=21.12 Aligned_cols=10 Identities=30% Similarity=0.823 Sum_probs=5.2
Q ss_pred eeeccCCCCc
Q 033690 90 SIGCSKCKGR 99 (113)
Q Consensus 90 ~v~C~kCqgk 99 (113)
.+.|++|..+
T Consensus 19 ~irC~~CG~r 28 (44)
T smart00659 19 VVRCRECGYR 28 (44)
T ss_pred ceECCCCCce
Confidence 4555555543
No 154
>PRK06921 hypothetical protein; Provisional
Probab=32.67 E-value=23 Score=28.16 Aligned_cols=17 Identities=29% Similarity=0.661 Sum_probs=13.4
Q ss_pred cceEEcCCCccceeeec
Q 033690 49 VGMIACSRCKGMGLIKS 65 (113)
Q Consensus 49 l~~vaCsrCKGtG~Ik~ 65 (113)
.....||.|++||-|..
T Consensus 30 ~~~~~Cp~C~dtG~i~~ 46 (266)
T PRK06921 30 AERYDCPKCKDRGIIIY 46 (266)
T ss_pred CCCCCCCCCCCCEEEEe
Confidence 33467999999999953
No 155
>PRK00481 NAD-dependent deacetylase; Provisional
Probab=32.16 E-value=30 Score=26.86 Aligned_cols=6 Identities=50% Similarity=1.680 Sum_probs=4.3
Q ss_pred CCCCCC
Q 033690 104 CPGCSN 109 (113)
Q Consensus 104 CP~Csk 109 (113)
||.|+.
T Consensus 145 C~~Cgg 150 (242)
T PRK00481 145 CPKCGG 150 (242)
T ss_pred CCCCCC
Confidence 888864
No 156
>COG2995 PqiA Uncharacterized paraquat-inducible protein A [Function unknown]
Probab=32.09 E-value=30 Score=30.81 Aligned_cols=36 Identities=22% Similarity=0.457 Sum_probs=24.3
Q ss_pred cccCCCCCccccccceeeccCCCCccce----eCCCCCCC
Q 033690 75 DELYPPLDGAESQMKSIGCSKCKGRGHF----CCPGCSNK 110 (113)
Q Consensus 75 ddiyes~g~~~~~~~~v~C~kCqgkG~~----~CP~Csk~ 110 (113)
+++|..-.+--.+++.+.|+.|+-.+.- +||+|+-|
T Consensus 205 e~~~pq~~~~~~~~~~~~C~~C~~~~~~~~~~~CpRC~~~ 244 (418)
T COG2995 205 ERFYPQTLATGAREGLRSCLCCHYILPHDAEPRCPRCGSK 244 (418)
T ss_pred HhhccccCCCCCcccceecccccccCCHhhCCCCCCCCCh
Confidence 4555422222456778889999988766 89999754
No 157
>COG2863 Cytochrome c553 [Energy production and conversion]
Probab=31.96 E-value=33 Score=25.56 Aligned_cols=35 Identities=23% Similarity=0.326 Sum_probs=20.2
Q ss_pred hhhHHHhhhhhcccchhhHHhhhhhcccccccccCCc
Q 033690 13 GVGTVLLCATIAAPKLDAFFSASQRSSLGMCKKCGDV 49 (113)
Q Consensus 13 ~vg~lll~atiaa~kvd~fi~~sqr~sL~mCk~Cggl 49 (113)
++++|.++++|+...+|+=-...+=.. +|-.|+|.
T Consensus 7 ~l~~L~~~~~~a~a~~~a~~G~~~~~~--~Ca~CHG~ 41 (121)
T COG2863 7 ALLVLALAAAIAWAAADAALGKALAAQ--SCAACHGA 41 (121)
T ss_pred HHHHHHHhccchhhhhhHHHHHHhhcc--hhhhccCC
Confidence 567778888888777666544222222 45555443
No 158
>PF00098 zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the CysCysHisCys (CCHC) type zinc finger domains, and have the sequence: C-X2-C-X4-H-X4-C where X can be any amino acid, and number indicates the number of residues. These 18 residues CCHC zinc finger domains are mainly found in the nucleocapsid protein of retroviruses. It is required for viral genome packaging and for early infection process [, , ]. It is also found in eukaryotic proteins involved in RNA binding or single-stranded DNA binding []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 2L44_A 1A1T_A 1WWG_A 1U6P_A 1WWD_A 1WWE_A 1A6B_B 1F6U_A 1MFS_A 1NCP_C ....
Probab=31.85 E-value=27 Score=17.87 Aligned_cols=13 Identities=31% Similarity=0.738 Sum_probs=10.2
Q ss_pred eeccCCCCcccee
Q 033690 91 IGCSKCKGRGHFC 103 (113)
Q Consensus 91 v~C~kCqgkG~~~ 103 (113)
+.|.+|...|++.
T Consensus 1 ~~C~~C~~~GH~~ 13 (18)
T PF00098_consen 1 RKCFNCGEPGHIA 13 (18)
T ss_dssp SBCTTTSCSSSCG
T ss_pred CcCcCCCCcCccc
Confidence 3688999988874
No 159
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=31.67 E-value=20 Score=31.68 Aligned_cols=26 Identities=31% Similarity=0.742 Sum_probs=21.5
Q ss_pred ccccceeeccCCCC---------------ccceeCCCCCCC
Q 033690 85 ESQMKSIGCSKCKG---------------RGHFCCPGCSNK 110 (113)
Q Consensus 85 ~~~~~~v~C~kCqg---------------kG~~~CP~Csk~ 110 (113)
..+.+..-|..||+ +|++.||.|...
T Consensus 357 ~~~~ks~~Cf~CQ~~fp~~~~~~~~~~~ss~rY~Ce~CK~~ 397 (421)
T COG5151 357 GTNPKSTHCFVCQGPFPKPPVSPFDESTSSGRYQCELCKST 397 (421)
T ss_pred CCCCCCccceeccCCCCCCCCCcccccccccceechhhhhh
Confidence 44566777999999 999999999754
No 160
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=31.56 E-value=33 Score=25.64 Aligned_cols=20 Identities=25% Similarity=0.657 Sum_probs=15.8
Q ss_pred eeeccCCCCccceeCCCCCC
Q 033690 90 SIGCSKCKGRGHFCCPGCSN 109 (113)
Q Consensus 90 ~v~C~kCqgkG~~~CP~Csk 109 (113)
..+|..|-|.+..+|+.|+.
T Consensus 99 ~~~C~~Cgg~rfv~C~~C~G 118 (147)
T cd03031 99 GGVCEGCGGARFVPCSECNG 118 (147)
T ss_pred CCCCCCCCCcCeEECCCCCC
Confidence 34588888888888888854
No 161
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=31.40 E-value=20 Score=34.26 Aligned_cols=19 Identities=32% Similarity=0.782 Sum_probs=15.4
Q ss_pred ccccceeeccCCCCcccee
Q 033690 85 ESQMKSIGCSKCKGRGHFC 103 (113)
Q Consensus 85 ~~~~~~v~C~kCqgkG~~~ 103 (113)
+..++.--||.||++|.|.
T Consensus 310 n~evkp~~C~~cqSkGpf~ 328 (854)
T KOG0477|consen 310 NSEVKPGSCPECQSKGPFE 328 (854)
T ss_pred CceeCCCCCccccCCCCCc
Confidence 5567777899999999875
No 162
>PRK12366 replication factor A; Reviewed
Probab=31.03 E-value=28 Score=31.45 Aligned_cols=20 Identities=25% Similarity=0.768 Sum_probs=15.6
Q ss_pred eeccCCC-----CccceeCCCCCCC
Q 033690 91 IGCSKCK-----GRGHFCCPGCSNK 110 (113)
Q Consensus 91 v~C~kCq-----gkG~~~CP~Csk~ 110 (113)
..||.|+ +.|.+.||+|++.
T Consensus 533 ~aCp~CnkKv~~~~g~~~C~~c~~~ 557 (637)
T PRK12366 533 YLCPNCRKRVEEVDGEYICEFCGEV 557 (637)
T ss_pred ecccccCeEeEcCCCcEECCCCCCC
Confidence 4699997 4477889999874
No 163
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=30.78 E-value=29 Score=26.60 Aligned_cols=25 Identities=28% Similarity=0.590 Sum_probs=18.8
Q ss_pred cccceeeccCCCCc--------cceeCCCCCCC
Q 033690 86 SQMKSIGCSKCKGR--------GHFCCPGCSNK 110 (113)
Q Consensus 86 ~~~~~v~C~kCqgk--------G~~~CP~Csk~ 110 (113)
....-.-||.|.-+ ..|.||.|+..
T Consensus 113 ~~~~~Y~Cp~C~~rytf~eA~~~~F~Cp~Cg~~ 145 (178)
T PRK06266 113 ENNMFFFCPNCHIRFTFDEAMEYGFRCPQCGEM 145 (178)
T ss_pred cCCCEEECCCCCcEEeHHHHhhcCCcCCCCCCC
Confidence 34456679999766 47999999864
No 164
>KOG4431 consensus Uncharacterized protein, induced by hypoxia [General function prediction only]
Probab=29.33 E-value=30 Score=25.34 Aligned_cols=14 Identities=36% Similarity=0.667 Sum_probs=12.8
Q ss_pred hhhhhHHHhhhhhc
Q 033690 11 GFGVGTVLLCATIA 24 (113)
Q Consensus 11 gf~vg~lll~atia 24 (113)
||.||||++++.+.
T Consensus 71 gftV~AL~~G~~~~ 84 (100)
T KOG4431|consen 71 GFTVGALVLGLAYT 84 (100)
T ss_pred HHHHHHHHhhhhhh
Confidence 89999999998876
No 165
>PRK11032 hypothetical protein; Provisional
Probab=29.06 E-value=50 Score=25.53 Aligned_cols=10 Identities=30% Similarity=0.491 Sum_probs=6.0
Q ss_pred eeeccCCCCc
Q 033690 90 SIGCSKCKGR 99 (113)
Q Consensus 90 ~v~C~kCqgk 99 (113)
..|||+|.+.
T Consensus 142 i~pCp~C~~~ 151 (160)
T PRK11032 142 LPLCPKCGHD 151 (160)
T ss_pred CCCCCCCCCC
Confidence 4567776654
No 166
>cd01412 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli CobB; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. CobB is a bacterial sirtuin that deacetylates acetyl-CoA synthetase at an active site lysine to stimulate its enzymatic activity.
Probab=28.59 E-value=36 Score=25.92 Aligned_cols=35 Identities=26% Similarity=0.524 Sum_probs=18.3
Q ss_pred cccCCCCCcc-----ccccceeeccCCCCccc----------eeCCCCCC
Q 033690 75 DELYPPLDGA-----ESQMKSIGCSKCKGRGH----------FCCPGCSN 109 (113)
Q Consensus 75 ddiyes~g~~-----~~~~~~v~C~kCqgkG~----------~~CP~Csk 109 (113)
|+|++.+|.+ -.......|.+|.-.-. ..||.|+.
T Consensus 89 DgL~~~aG~~~v~e~HG~~~~~~C~~C~~~~~~~~~~~~~~~p~C~~Cgg 138 (224)
T cd01412 89 DGLHERAGSRNVIELHGSLFRVRCSSCGYVGENNEEIPEEELPRCPKCGG 138 (224)
T ss_pred hHhhHHhCCCceEeeCCCcCccccCCCCCCCCcchhhhccCCCCCCCCCC
Confidence 5555555532 12334455777765222 35888864
No 167
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=28.36 E-value=21 Score=25.40 Aligned_cols=19 Identities=32% Similarity=0.796 Sum_probs=12.7
Q ss_pred ccceeeccCCCCccceeCCCC
Q 033690 87 QMKSIGCSKCKGRGHFCCPGC 107 (113)
Q Consensus 87 ~~~~v~C~kCqgkG~~~CP~C 107 (113)
....|.||+|++ -=.|--|
T Consensus 58 ~~~~W~CP~Crg--iCnCs~C 76 (105)
T PF10497_consen 58 EDPNWKCPKCRG--ICNCSFC 76 (105)
T ss_pred cCCceECCCCCC--eeCCHhh
Confidence 445799999987 3334444
No 168
>COG4888 Uncharacterized Zn ribbon-containing protein [General function prediction only]
Probab=27.60 E-value=49 Score=24.53 Aligned_cols=23 Identities=26% Similarity=0.658 Sum_probs=18.3
Q ss_pred ccccccCCcceEEcCCCccceeeecCCccc
Q 033690 41 GMCKKCGDVGMIACSRCKGMGLIKSNGLFG 70 (113)
Q Consensus 41 ~mCk~Cggl~~vaCsrCKGtG~Ik~gg~f~ 70 (113)
-.|++|+-+..+.|. ||+..+.+
T Consensus 23 FtCp~Cghe~vs~ct-------vkk~~~~g 45 (104)
T COG4888 23 FTCPRCGHEKVSSCT-------VKKTVNIG 45 (104)
T ss_pred EecCccCCeeeeEEE-------EEecCcee
Confidence 469999999999887 77776654
No 169
>PRK14138 NAD-dependent deacetylase; Provisional
Probab=27.35 E-value=46 Score=26.23 Aligned_cols=36 Identities=22% Similarity=0.479 Sum_probs=22.0
Q ss_pred ccccCCCCCcc-----ccccceeeccCCCCc-------------cceeCCCCCC
Q 033690 74 MDELYPPLDGA-----ESQMKSIGCSKCKGR-------------GHFCCPGCSN 109 (113)
Q Consensus 74 ~ddiyes~g~~-----~~~~~~v~C~kCqgk-------------G~~~CP~Csk 109 (113)
+|+|++.+|.+ -.....+.|++|.-. ..-+||.|+.
T Consensus 98 IDgLh~~aG~~~VielHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~p~Cp~Cgg 151 (244)
T PRK14138 98 IDRLHQKAGSKKVIELHGNVEEYYCVRCGKRYTVEDVIEKLEKSDVPRCDDCSG 151 (244)
T ss_pred ccChhhHcCCCeEEEccCCcCeeEECCCCCcccHHHHHHHHhcCCCCCCCCCCC
Confidence 47777777643 234456678888642 1245888863
No 170
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=26.45 E-value=35 Score=24.91 Aligned_cols=11 Identities=45% Similarity=1.358 Sum_probs=8.7
Q ss_pred cceeCCCCCCC
Q 033690 100 GHFCCPGCSNK 110 (113)
Q Consensus 100 G~~~CP~Csk~ 110 (113)
|.|.||.|++.
T Consensus 122 ~~f~Cp~Cg~~ 132 (147)
T smart00531 122 GTFTCPRCGEE 132 (147)
T ss_pred CcEECCCCCCE
Confidence 45999999874
No 171
>CHL00183 petJ cytochrome c553; Provisional
Probab=26.39 E-value=34 Score=23.10 Aligned_cols=40 Identities=13% Similarity=0.196 Sum_probs=21.2
Q ss_pred hhhhhhhHHHhhhhhcccchhhHHhhhhhcccccccccCCc
Q 033690 9 VAGFGVGTVLLCATIAAPKLDAFFSASQRSSLGMCKKCGDV 49 (113)
Q Consensus 9 iagf~vg~lll~atiaa~kvd~fi~~sqr~sL~mCk~Cggl 49 (113)
|-||++++|+|.++.++.-.+- ++.-+.--...|..|++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~a~-~~~G~~ly~~~Ca~CHg~ 43 (108)
T CHL00183 4 IIGFLISCFALISFSQPAFAAD-LDNGEQIFSANCAACHAG 43 (108)
T ss_pred HHHHHHHHHHHHhcCCcccccc-HHHHHHHHHHHHHHHCCC
Confidence 4578888888776444322211 222222122369888884
No 172
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=26.11 E-value=39 Score=34.83 Aligned_cols=31 Identities=26% Similarity=0.679 Sum_probs=24.7
Q ss_pred hhhcccccccccCCcceE------------EcCCCccceeeec
Q 033690 35 SQRSSLGMCKKCGDVGMI------------ACSRCKGMGLIKS 65 (113)
Q Consensus 35 sqr~sL~mCk~Cggl~~v------------aCsrCKGtG~Ik~ 65 (113)
|-+.+-|.|+.|+|.|.+ .|+.|.|.+-.+.
T Consensus 1602 SfN~~~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e 1644 (1809)
T PRK00635 1602 STNTKQGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPL 1644 (1809)
T ss_pred cccCCCCCCCCCccCceEEEecccCCCcccCCCCCCCcCCCHH
Confidence 334456889999999975 7999999997643
No 173
>PF02022 Integrase_Zn: Integrase Zinc binding domain The structure of the N-terminal zinc binding domain.; InterPro: IPR003308 Retroviral integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains: an N-terminal zinc binding domain, a central catalytic core and a C-terminal DNA-binding domain [, ]. Often found as part of the POL polyprotein.; GO: 0008270 zinc ion binding; PDB: 1E0E_A 3F9K_F 1E27_C 1K6Y_B 1WJD_A 1WJB_A 1WJF_A 1WJE_B 3HPG_B 3HPH_C ....
Probab=25.90 E-value=20 Score=21.89 Aligned_cols=11 Identities=36% Similarity=0.957 Sum_probs=8.7
Q ss_pred eeeccCCCCcc
Q 033690 90 SIGCSKCKGRG 100 (113)
Q Consensus 90 ~v~C~kCqgkG 100 (113)
+-.|++||-+|
T Consensus 30 V~~C~~Cq~~g 40 (40)
T PF02022_consen 30 VNQCPKCQQKG 40 (40)
T ss_dssp HHHSCCHHSTS
T ss_pred HHHCHHHhhCc
Confidence 45699999887
No 174
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=25.65 E-value=58 Score=19.03 Aligned_cols=9 Identities=33% Similarity=0.745 Sum_probs=5.4
Q ss_pred eeeccCCCC
Q 033690 90 SIGCSKCKG 98 (113)
Q Consensus 90 ~v~C~kCqg 98 (113)
.-.|++|.|
T Consensus 19 id~C~~C~G 27 (41)
T PF13453_consen 19 IDVCPSCGG 27 (41)
T ss_pred EEECCCCCe
Confidence 445776665
No 175
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=25.39 E-value=37 Score=16.19 Aligned_cols=9 Identities=44% Similarity=1.184 Sum_probs=5.0
Q ss_pred eeCCCCCCC
Q 033690 102 FCCPGCSNK 110 (113)
Q Consensus 102 ~~CP~Csk~ 110 (113)
|.||.|++.
T Consensus 1 ~~C~~C~~~ 9 (24)
T PF13894_consen 1 FQCPICGKS 9 (24)
T ss_dssp EE-SSTS-E
T ss_pred CCCcCCCCc
Confidence 568888764
No 176
>KOG2822 consensus Sphingoid base-phosphate phosphatase [Lipid transport and metabolism]
Probab=25.36 E-value=30 Score=30.75 Aligned_cols=32 Identities=31% Similarity=0.428 Sum_probs=26.3
Q ss_pred hhhhhhhHHHhhhhh-cccchhhHHhhhhhccc
Q 033690 9 VAGFGVGTVLLCATI-AAPKLDAFFSASQRSSL 40 (113)
Q Consensus 9 iagf~vg~lll~ati-aa~kvd~fi~~sqr~sL 40 (113)
++|+++|+|++.-.. ..-++|.|+++||-=.+
T Consensus 219 ~sG~ligvl~~~~~~~~~~~~dnf~~s~~~fP~ 251 (407)
T KOG2822|consen 219 VSGLLIGVLILILRYPFVDFIDNFISSSQWFPL 251 (407)
T ss_pred HhhhHHHHHHhhhhhhHHHhccchhhcCccccH
Confidence 689999999998876 46799999999976544
No 177
>PRK06835 DNA replication protein DnaC; Validated
Probab=25.17 E-value=30 Score=28.70 Aligned_cols=11 Identities=45% Similarity=1.271 Sum_probs=7.4
Q ss_pred EcCCCccceee
Q 033690 53 ACSRCKGMGLI 63 (113)
Q Consensus 53 aCsrCKGtG~I 63 (113)
.||.||+||-|
T Consensus 100 ~Cp~C~dtG~i 110 (329)
T PRK06835 100 TCPKCKDTGFI 110 (329)
T ss_pred CCCCCCCCCCc
Confidence 46667777766
No 178
>PRK15103 paraquat-inducible membrane protein A; Provisional
Probab=24.69 E-value=68 Score=27.70 Aligned_cols=26 Identities=27% Similarity=0.560 Sum_probs=17.2
Q ss_pred ccccceeeccCCCCc---cceeCCCCCCC
Q 033690 85 ESQMKSIGCSKCKGR---GHFCCPGCSNK 110 (113)
Q Consensus 85 ~~~~~~v~C~kCqgk---G~~~CP~Csk~ 110 (113)
....+.+.|++|--- +.-.||+|+.+
T Consensus 216 ~~~~~l~~C~~Cd~l~~~~~a~CpRC~~~ 244 (419)
T PRK15103 216 GLRQGLRSCSCCTAILPADQPVCPRCHTK 244 (419)
T ss_pred ccccCCCcCCCCCCCCCCCCCCCCCCCCc
Confidence 344557779998732 44579999754
No 179
>PRK01103 formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase; Validated
Probab=24.60 E-value=51 Score=26.30 Aligned_cols=18 Identities=44% Similarity=1.313 Sum_probs=12.4
Q ss_pred eccCCC---------CccceeCCCCCC
Q 033690 92 GCSKCK---------GRGHFCCPGCSN 109 (113)
Q Consensus 92 ~C~kCq---------gkG~~~CP~Csk 109 (113)
+|+.|. ||+-+-||.|++
T Consensus 247 pC~~Cg~~I~~~~~~gR~t~~CP~CQ~ 273 (274)
T PRK01103 247 PCRRCGTPIEKIKQGGRSTFFCPRCQK 273 (274)
T ss_pred CCCCCCCeeEEEEECCCCcEECcCCCC
Confidence 566665 467777888875
No 180
>PF13134 DUF3948: Protein of unknown function (DUF3948)
Probab=24.31 E-value=43 Score=20.61 Aligned_cols=20 Identities=30% Similarity=0.405 Sum_probs=16.4
Q ss_pred CchhhhhhhhhhHHHhhhhh
Q 033690 4 LTASEVAGFGVGTVLLCATI 23 (113)
Q Consensus 4 ~t~seiagf~vg~lll~ati 23 (113)
.|-.+.-|.+-||.+|-|-|
T Consensus 9 ~tK~D~lgsasga~~LTafI 28 (35)
T PF13134_consen 9 VTKMDFLGSASGAAVLTAFI 28 (35)
T ss_pred EechhhhhcccchHHHHHHH
Confidence 56778889999999998766
No 181
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=24.10 E-value=25 Score=27.13 Aligned_cols=19 Identities=32% Similarity=0.996 Sum_probs=16.0
Q ss_pred eeccCCCCccceeCCCCCCC
Q 033690 91 IGCSKCKGRGHFCCPGCSNK 110 (113)
Q Consensus 91 v~C~kCqgkG~~~CP~Csk~ 110 (113)
..|.-|++|| |.|.-|++.
T Consensus 143 ~~C~lC~~kG-fiCe~C~~~ 161 (202)
T PF13901_consen 143 YSCELCQQKG-FICEICNSD 161 (202)
T ss_pred HHhHHHHhCC-CCCccCCCC
Confidence 3699999998 789999764
No 182
>KOG2593 consensus Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=23.61 E-value=42 Score=30.07 Aligned_cols=25 Identities=24% Similarity=0.882 Sum_probs=20.7
Q ss_pred ccccceeeccCCCCc--------------cceeCCCCCC
Q 033690 85 ESQMKSIGCSKCKGR--------------GHFCCPGCSN 109 (113)
Q Consensus 85 ~~~~~~v~C~kCqgk--------------G~~~CP~Csk 109 (113)
...+....||.||.+ |.|+|..|+.
T Consensus 123 ~t~~~~Y~Cp~C~kkyt~Lea~~L~~~~~~~F~C~~C~g 161 (436)
T KOG2593|consen 123 DTNVAGYVCPNCQKKYTSLEALQLLDNETGEFHCENCGG 161 (436)
T ss_pred ccccccccCCccccchhhhHHHHhhcccCceEEEecCCC
Confidence 445567789999998 9999999975
No 183
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=23.01 E-value=60 Score=26.06 Aligned_cols=24 Identities=17% Similarity=0.451 Sum_probs=15.5
Q ss_pred ccccCCCCCcc-----ccccceeeccCCC
Q 033690 74 MDELYPPLDGA-----ESQMKSIGCSKCK 97 (113)
Q Consensus 74 ~ddiyes~g~~-----~~~~~~v~C~kCq 97 (113)
+|.|++.+|.+ -.......|++|.
T Consensus 107 IDgLh~rAG~~~ViElHG~~~~~~C~~C~ 135 (285)
T PRK05333 107 VDGLHQRAGSRDVIELHGRLDGVRCMGCG 135 (285)
T ss_pred cchhHHHcCCCCEEeecCCcCEEEECCCC
Confidence 46677776643 2344567799988
No 184
>PRK14704 anaerobic ribonucleoside triphosphate reductase; Provisional
Probab=22.84 E-value=53 Score=29.95 Aligned_cols=26 Identities=27% Similarity=0.597 Sum_probs=19.0
Q ss_pred cccceeeccCCCCccce--eCCCCCCCC
Q 033690 86 SQMKSIGCSKCKGRGHF--CCPGCSNKP 111 (113)
Q Consensus 86 ~~~~~v~C~kCqgkG~~--~CP~Csk~~ 111 (113)
-....-.|.+|--.|.+ .||.|++..
T Consensus 555 in~~~~~C~~CGy~g~~~~~CP~CG~~d 582 (618)
T PRK14704 555 INHPVDRCKCCSYHGVIGNECPSCGNED 582 (618)
T ss_pred eCCCCeecCCCCCCCCcCccCcCCCCCC
Confidence 34455669999777764 999998653
No 185
>PF11240 DUF3042: Protein of unknown function (DUF3042); InterPro: IPR021402 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=22.77 E-value=44 Score=22.01 Aligned_cols=17 Identities=35% Similarity=0.356 Sum_probs=13.4
Q ss_pred hhhhhhhHHHhhhhhcc
Q 033690 9 VAGFGVGTVLLCATIAA 25 (113)
Q Consensus 9 iagf~vg~lll~atiaa 25 (113)
+-||.+|.+...|++|+
T Consensus 5 ~~G~l~G~~~t~aa~a~ 21 (54)
T PF11240_consen 5 GKGFLTGVAATLAAIAG 21 (54)
T ss_pred hhhHHHhHHHHHHHHHH
Confidence 45899999888887764
No 186
>PHA02998 RNA polymerase subunit; Provisional
Probab=22.45 E-value=70 Score=26.01 Aligned_cols=7 Identities=29% Similarity=1.123 Sum_probs=3.5
Q ss_pred eCCCCCC
Q 033690 103 CCPGCSN 109 (113)
Q Consensus 103 ~CP~Csk 109 (113)
.|.+|++
T Consensus 173 kC~~CG~ 179 (195)
T PHA02998 173 ACRDCKK 179 (195)
T ss_pred EcCCCCC
Confidence 4555554
No 187
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=22.33 E-value=39 Score=30.36 Aligned_cols=20 Identities=45% Similarity=1.323 Sum_probs=17.8
Q ss_pred ccccccCCc------ceEEcCCCccc
Q 033690 41 GMCKKCGDV------GMIACSRCKGM 60 (113)
Q Consensus 41 ~mCk~Cggl------~~vaCsrCKGt 60 (113)
.||+-|||+ |-..|..|||-
T Consensus 16 ElCPVCGDkVSGYHYGLLTCESCKGF 41 (475)
T KOG4218|consen 16 ELCPVCGDKVSGYHYGLLTCESCKGF 41 (475)
T ss_pred cccccccCccccceeeeeehhhhhhH
Confidence 799999997 67899999984
No 188
>PF05488 PAAR_motif: PAAR motif; InterPro: IPR008727 The PAAR motif is usually found in pairs in a family of bacterial membrane proteins. It is also found as a triplet of tandem repeats comprising the entire length in a another family of hypothetical proteins.
Probab=21.81 E-value=60 Score=20.86 Aligned_cols=18 Identities=33% Similarity=0.768 Sum_probs=14.3
Q ss_pred eEEcCCCccceeeecCCc
Q 033690 51 MIACSRCKGMGLIKSNGL 68 (113)
Q Consensus 51 ~vaCsrCKGtG~Ik~gg~ 68 (113)
.+.|+.|++.+.|-.+..
T Consensus 34 ~~~C~~~~~~~~I~~G~~ 51 (76)
T PF05488_consen 34 QVTCPKCKGPGPIVEGSP 51 (76)
T ss_pred cccCCCccccceeccCCC
Confidence 778888888888877654
No 189
>TIGR02487 NrdD anaerobic ribonucleoside-triphosphate reductase. This model represents the oxygen-sensitive (anaerobic, class III) ribonucleotide reductase. The mechanism of the enzyme involves a glycine-centered radical, a C-terminal zinc binding site, and a set of conserved active site cysteines and asparagines. This enzyme requires an activating component, NrdG, a radical-SAM domain containing enzyme (TIGR02491). Together the two form an alpha-2/beta-2 heterodimer.
Probab=21.71 E-value=36 Score=30.38 Aligned_cols=26 Identities=23% Similarity=0.460 Sum_probs=18.7
Q ss_pred ccccceeeccCCCCccce---eCCCCCCC
Q 033690 85 ESQMKSIGCSKCKGRGHF---CCPGCSNK 110 (113)
Q Consensus 85 ~~~~~~v~C~kCqgkG~~---~CP~Csk~ 110 (113)
+-....-.|.+|--.|.+ .||.|++.
T Consensus 519 ~~n~~~~~C~~CG~~g~~~~~~CP~Cgs~ 547 (579)
T TIGR02487 519 GINPPVDVCEDCGYTGEGLNDKCPKCGSH 547 (579)
T ss_pred EeccCCccCCCCCCCCCCCCCcCcCCCCc
Confidence 344455669999767665 79999865
No 190
>PRK09263 anaerobic ribonucleoside triphosphate reductase; Provisional
Probab=21.59 E-value=38 Score=31.26 Aligned_cols=38 Identities=26% Similarity=0.514 Sum_probs=23.6
Q ss_pred ccccCCCCCccccccceeeccCCCCccce-------eCCCCCCCC
Q 033690 74 MDELYPPLDGAESQMKSIGCSKCKGRGHF-------CCPGCSNKP 111 (113)
Q Consensus 74 ~ddiyes~g~~~~~~~~v~C~kCqgkG~~-------~CP~Csk~~ 111 (113)
++-+|+.++=-+-....-.|++|--.|-+ .||.|+...
T Consensus 625 v~~~~~~i~Y~~in~~~~~C~~CG~~Ge~~~~~~~~~CP~CG~~~ 669 (711)
T PRK09263 625 WDYSYDRVGYLGTNTPIDECYECGFTGEFECTEKGFTCPKCGNHD 669 (711)
T ss_pred HHHHHHCCCeEEeCCCCcccCCCCCCccccCCCCCCcCcCCCCCC
Confidence 33334433333444556679999877765 799998643
No 191
>PF12977 DUF3861: Domain of Unknown Function with PDB structure (DUF3861); InterPro: IPR024476 This entry represents a family of proteins of unknown function which are found predominantly in the proteobacteria. The structurally characterised member of this family (Q6D5X8 from SWISSPROT) adopts a novel fold consisting of a long N-terminal beta-hairpin followed by three alpha helices. This structure shows some resemblance to three-helical bundle folds such as the serum albumin-like fold.; PDB: 3CJL_B.
Probab=20.92 E-value=86 Score=22.41 Aligned_cols=32 Identities=22% Similarity=0.405 Sum_probs=26.3
Q ss_pred CCchhhhhhhhhhHHHhhhhhcccchhhHHhh
Q 033690 3 GLTASEVAGFGVGTVLLCATIAAPKLDAFFSA 34 (113)
Q Consensus 3 ~~t~seiagf~vg~lll~atiaa~kvd~fi~~ 34 (113)
.+++.|-|.|+||-=||+-.+...|=+-+++.
T Consensus 46 ~~~~~~a~afavGLKLfgevml~~R~~PLF~~ 77 (94)
T PF12977_consen 46 DFDEDEAAAFAVGLKLFGEVMLKNRKHPLFAD 77 (94)
T ss_dssp SS-HHHHHHHHHHHHHHHHHHHHTTTSHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhccCCcchHH
Confidence 57789999999999999999988887766653
No 192
>PRK14810 formamidopyrimidine-DNA glycosylase; Provisional
Probab=20.91 E-value=63 Score=25.94 Aligned_cols=10 Identities=40% Similarity=1.122 Sum_probs=5.6
Q ss_pred ccceeCCCCC
Q 033690 99 RGHFCCPGCS 108 (113)
Q Consensus 99 kG~~~CP~Cs 108 (113)
|.-+-||.|+
T Consensus 262 R~t~~CP~CQ 271 (272)
T PRK14810 262 RSSHYCPHCQ 271 (272)
T ss_pred CccEECcCCc
Confidence 4555566554
No 193
>PRK10811 rne ribonuclease E; Reviewed
Probab=20.73 E-value=18 Score=35.54 Aligned_cols=30 Identities=27% Similarity=0.587 Sum_probs=24.4
Q ss_pred EEcCCCccceeeecCCccccccccccCCCC
Q 033690 52 IACSRCKGMGLIKSNGLFGFSIMDELYPPL 81 (113)
Q Consensus 52 vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~ 81 (113)
..|+.|.|+|+|++.-.+.+.++..|.+-+
T Consensus 402 e~Cp~C~GtG~v~s~etla~~i~R~I~re~ 431 (1068)
T PRK10811 402 HVCPRCSGTGTVRDNESLSLSILRLIEEEA 431 (1068)
T ss_pred ccCcccCCCcccccHHHHHHHHHHHHHHHH
Confidence 479999999999999888888877665533
No 194
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=20.71 E-value=62 Score=19.84 Aligned_cols=22 Identities=32% Similarity=0.623 Sum_probs=13.1
Q ss_pred cccceeeccCCC----------CccceeCCCC
Q 033690 86 SQMKSIGCSKCK----------GRGHFCCPGC 107 (113)
Q Consensus 86 ~~~~~v~C~kCq----------gkG~~~CP~C 107 (113)
.+.=-|.|++|. -.+.-.||.|
T Consensus 24 ~~~v~W~C~~Cgh~w~~~v~~R~~~~~~CP~C 55 (55)
T PF14311_consen 24 NKKVWWKCPKCGHEWKASVNDRTRRGKGCPYC 55 (55)
T ss_pred CCEEEEECCCCCCeeEccHhhhccCCCCCCCC
Confidence 344458888882 2355566665
No 195
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=20.63 E-value=60 Score=22.30 Aligned_cols=23 Identities=22% Similarity=0.648 Sum_probs=12.2
Q ss_pred eeeccCCCCccc--eeCCCCCCCCC
Q 033690 90 SIGCSKCKGRGH--FCCPGCSNKPQ 112 (113)
Q Consensus 90 ~v~C~kCqgkG~--~~CP~Csk~~~ 112 (113)
...|..|+..=. -.||+|.+.-|
T Consensus 17 ~~~C~~C~~~~~~~a~CPdC~~~Le 41 (70)
T PF07191_consen 17 HYHCEACQKDYKKEAFCPDCGQPLE 41 (70)
T ss_dssp EEEETTT--EEEEEEE-TTT-SB-E
T ss_pred EEECccccccceecccCCCcccHHH
Confidence 567888887533 35999987654
No 196
>PF11672 DUF3268: Protein of unknown function (DUF3268); InterPro: IPR021686 This entry is represented by Listeria phage P100, Gp150. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=20.43 E-value=1.2e+02 Score=21.91 Aligned_cols=39 Identities=21% Similarity=0.402 Sum_probs=25.7
Q ss_pred eEEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCc
Q 033690 51 MIACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGR 99 (113)
Q Consensus 51 ~vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgk 99 (113)
-+.|+-|-|...+..+ ++||-.-- ..-.-.+-|+.|++-
T Consensus 2 p~~CpYCg~~~~l~~~--------~~iYg~~~--~~~~~~y~C~~C~Ay 40 (102)
T PF11672_consen 2 PIICPYCGGPAELVDG--------SEIYGHRY--DDGPYLYVCTPCDAY 40 (102)
T ss_pred CcccCCCCCeeEEccc--------chhcCccC--CCCceeEECCCCCce
Confidence 4789999999888776 44655111 112234889999875
No 197
>cd01407 SIR2-fam SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer.
Probab=20.41 E-value=65 Score=24.55 Aligned_cols=36 Identities=22% Similarity=0.516 Sum_probs=20.0
Q ss_pred ccccCCCCCcc-----ccccceeeccCCCCc-------------cceeCCCCCC
Q 033690 74 MDELYPPLDGA-----ESQMKSIGCSKCKGR-------------GHFCCPGCSN 109 (113)
Q Consensus 74 ~ddiyes~g~~-----~~~~~~v~C~kCqgk-------------G~~~CP~Csk 109 (113)
+|+|++.+|.. -.......|++|.-. -.-.||.|+.
T Consensus 88 iDgL~~~aG~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~p~C~~Cg~ 141 (218)
T cd01407 88 VDGLHQRAGSPKVIELHGSLFRVRCTKCGKEYPRDELQADIDREEVPRCPKCGG 141 (218)
T ss_pred cchhHHHcCCCCEEECcCCcCcceeCCCcCCCcHHHHhHhhccCCCCcCCCCCC
Confidence 46666666643 122334558888532 1235888864
No 198
>PRK13130 H/ACA RNA-protein complex component Nop10p; Reviewed
Probab=20.04 E-value=99 Score=20.23 Aligned_cols=24 Identities=33% Similarity=0.560 Sum_probs=15.7
Q ss_pred cceeeccCCCCccc-eeCCCCCCCC
Q 033690 88 MKSIGCSKCKGRGH-FCCPGCSNKP 111 (113)
Q Consensus 88 ~~~v~C~kCqgkG~-~~CP~Csk~~ 111 (113)
++..+|++|.--.. ..||.|+..-
T Consensus 3 s~mr~C~~CgvYTLk~~CP~CG~~t 27 (56)
T PRK13130 3 SKIRKCPKCGVYTLKEICPVCGGKT 27 (56)
T ss_pred ccceECCCCCCEEccccCcCCCCCC
Confidence 45667888865443 4588887653
No 199
>TIGR03831 YgiT_finger YgiT-type zinc finger domain. This domain model describes a small domain with two copies of a putative zinc-binding motif CXXC (usually CXXCG). Most member proteins consist largely of this domain or else carry an additional C-terminal helix-turn-helix domain, resembling that of the phage protein Cro and modeled by pfam01381.
Probab=20.03 E-value=48 Score=18.76 Aligned_cols=11 Identities=36% Similarity=0.724 Sum_probs=5.8
Q ss_pred cCCCccceeee
Q 033690 54 CSRCKGMGLIK 64 (113)
Q Consensus 54 CsrCKGtG~Ik 64 (113)
|+-|+|.-..+
T Consensus 1 C~~C~~~~~~~ 11 (46)
T TIGR03831 1 CPICGGEELEG 11 (46)
T ss_pred CCCCCCceecc
Confidence 67775443333
Done!