Query 033690
Match_columns 113
No_of_seqs 31 out of 33
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 08:13:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033690.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033690hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ctt_A DNAJ homolog subfamily 98.3 4.6E-07 1.6E-11 61.3 4.4 54 39-110 27-90 (104)
2 1exk_A DNAJ protein; extended 98.3 3E-07 1E-11 58.8 2.7 54 39-110 10-73 (79)
3 1nlt_A Protein YDJ1, mitochond 98.1 1E-06 3.6E-11 67.8 2.5 58 40-110 38-105 (248)
4 1exk_A DNAJ protein; extended 97.3 0.0002 6.9E-09 45.4 3.2 39 40-103 28-77 (79)
5 2ctt_A DNAJ homolog subfamily 97.1 0.00035 1.2E-08 46.9 3.6 40 39-103 44-94 (104)
6 1nlt_A Protein YDJ1, mitochond 96.1 0.0028 9.6E-08 48.6 2.5 39 41-102 55-108 (248)
7 3lcz_A YCZA, inhibitor of trap 94.8 0.017 5.9E-07 36.0 2.5 26 41-66 10-38 (53)
8 2bx9_A Anti-trap, AT, tryptoph 94.4 0.027 9.3E-07 35.1 2.7 24 42-65 11-37 (53)
9 2bx9_A Anti-trap, AT, tryptoph 93.6 0.043 1.5E-06 34.2 2.5 27 51-102 9-35 (53)
10 3lcz_A YCZA, inhibitor of trap 93.1 0.039 1.3E-06 34.4 1.7 12 52-63 10-21 (53)
11 1pft_A TFIIB, PFTFIIBN; N-term 80.1 0.76 2.6E-05 27.1 1.5 11 99-109 22-32 (50)
12 1twf_I B12.6, DNA-directed RNA 78.2 3.8 0.00013 28.4 4.9 25 39-63 3-38 (122)
13 3h0g_I DNA-directed RNA polyme 75.4 9 0.00031 26.1 6.1 73 39-111 3-110 (113)
14 2k1k_A Ephrin type-A receptor 63.7 3.4 0.00012 24.2 1.6 23 2-24 6-28 (38)
15 1qyp_A RNA polymerase II; tran 60.6 5.9 0.0002 23.8 2.4 8 52-59 16-23 (57)
16 2k2d_A Ring finger and CHY zin 57.1 5.5 0.00019 26.2 1.9 20 90-109 37-63 (79)
17 2hf1_A Tetraacyldisaccharide-1 55.5 5.5 0.00019 25.7 1.7 11 49-59 6-16 (68)
18 2jr6_A UPF0434 protein NMA0874 54.7 5.6 0.00019 25.6 1.6 11 49-59 6-16 (68)
19 2od1_A Protein CBFA2T1; zinc f 53.4 7.2 0.00025 23.6 1.9 28 33-60 6-33 (60)
20 2ct7_A Ring finger protein 31; 51.5 18 0.00061 23.2 3.7 18 92-109 27-51 (86)
21 2akl_A PHNA-like protein PA012 51.5 5.9 0.0002 29.5 1.5 20 90-109 27-52 (138)
22 3j20_Y 30S ribosomal protein S 51.1 8.4 0.00029 23.4 1.9 20 89-108 18-44 (50)
23 2m0f_A Zinc finger and BTB dom 51.0 6.6 0.00022 17.8 1.2 10 101-110 2-11 (29)
24 2k5r_A Uncharacterized protein 50.8 2.9 9.8E-05 29.0 -0.3 55 49-109 6-61 (97)
25 2pk7_A Uncharacterized protein 50.2 6.5 0.00022 25.4 1.4 11 49-59 6-16 (69)
26 2js4_A UPF0434 protein BB2007; 48.5 7.8 0.00027 25.1 1.6 12 49-60 6-17 (70)
27 2kpi_A Uncharacterized protein 48.2 8.6 0.00029 23.8 1.7 20 90-109 10-36 (56)
28 2a51_A Nucleocapsid protein; s 47.8 11 0.00036 21.0 1.9 14 90-103 21-34 (39)
29 2e72_A POGO transposable eleme 46.4 9.6 0.00033 24.0 1.7 12 100-111 11-22 (49)
30 1vd4_A Transcription initiatio 45.2 16 0.00055 20.7 2.5 12 99-110 37-48 (62)
31 1dl6_A Transcription factor II 45.2 10 0.00036 23.3 1.7 10 99-108 28-37 (58)
32 2jny_A Uncharacterized BCR; st 43.9 10 0.00034 24.4 1.5 11 49-59 8-18 (67)
33 2yqq_A Zinc finger HIT domain- 43.5 19 0.00064 22.7 2.7 20 90-109 12-31 (56)
34 1hxr_A Guanine nucleotide exch 42.6 22 0.00075 24.8 3.3 35 70-111 59-93 (115)
35 2k4x_A 30S ribosomal protein S 41.9 23 0.0008 21.7 3.0 19 90-108 18-43 (55)
36 2bx2_L Ribonuclease E, RNAse E 41.7 3.1 0.00011 35.8 -1.5 28 52-79 409-436 (517)
37 2lli_A Protein AIR2; RNA surve 39.8 33 0.0011 22.9 3.7 15 89-103 104-118 (124)
38 1wg2_A Zinc finger (AN1-like) 39.7 22 0.00076 23.1 2.7 28 82-110 7-37 (64)
39 2jw6_A Deformed epidermal auto 38.5 18 0.00061 20.8 1.9 25 85-109 4-28 (52)
40 2ec7_A GAG polyprotein (PR55GA 38.4 19 0.00065 21.0 2.1 14 90-103 27-40 (49)
41 1l1o_C Replication protein A 7 38.2 11 0.00038 27.2 1.2 21 90-110 43-71 (181)
42 2epr_A POZ-, at HOOK-, and zin 37.9 32 0.0011 18.0 2.8 9 101-109 40-48 (48)
43 3a43_A HYPD, hydrogenase nicke 37.7 14 0.00048 26.0 1.6 7 102-108 108-114 (139)
44 2xzf_A Formamidopyrimidine-DNA 37.6 15 0.00052 28.3 1.9 13 98-110 259-271 (271)
45 1x5w_A Zinc finger protein 64, 37.4 31 0.0011 19.3 2.9 10 101-110 37-46 (70)
46 1wfh_A Zinc finger (AN1-like) 35.7 29 0.00098 22.5 2.7 24 85-109 10-36 (64)
47 2l34_A TYRO protein tyrosine k 35.5 18 0.0006 20.6 1.5 22 3-24 3-24 (33)
48 2m0e_A Zinc finger and BTB dom 35.2 17 0.00057 16.2 1.2 10 102-111 3-12 (29)
49 1rik_A E6APC1 peptide; E6-bind 34.5 15 0.00052 16.6 1.0 9 102-110 3-11 (29)
50 1ard_A Yeast transcription fac 34.0 16 0.00054 16.5 1.0 10 102-111 3-12 (29)
51 2odd_A Protein CBFA2T1; MYND z 33.6 20 0.00069 21.6 1.7 22 39-60 16-37 (64)
52 2fiy_A Protein FDHE homolog; F 33.5 46 0.0016 26.5 4.2 44 8-52 151-194 (309)
53 2vf7_A UVRA2, excinuclease ABC 33.0 25 0.00085 31.6 2.8 12 41-52 639-650 (842)
54 2kvh_A Zinc finger and BTB dom 32.6 17 0.00058 16.4 1.0 10 101-110 3-12 (27)
55 2dj8_A Protein CBFA2T1; zinc f 32.6 17 0.00058 21.9 1.2 23 38-60 13-35 (60)
56 2apo_B Ribosome biogenesis pro 31.4 24 0.00081 22.6 1.8 23 89-111 5-28 (60)
57 2kdx_A HYPA, hydrogenase/ureas 30.9 24 0.00082 23.8 1.8 24 87-110 70-99 (119)
58 1ltl_A DNA replication initiat 30.8 34 0.0012 26.0 2.9 11 90-100 156-166 (279)
59 1vq8_Z 50S ribosomal protein L 30.7 15 0.00051 24.5 0.7 24 87-110 24-54 (83)
60 1paa_A Yeast transcription fac 30.6 19 0.00064 16.4 0.9 10 102-111 3-12 (30)
61 1znf_A 31ST zinc finger from X 30.4 19 0.00064 16.0 0.9 10 102-111 2-11 (27)
62 2kvf_A Zinc finger and BTB dom 30.1 20 0.00067 16.2 1.0 9 102-110 4-12 (28)
63 2aus_D NOP10, ribosome biogene 29.8 17 0.00059 23.3 0.9 23 88-110 3-26 (60)
64 3pih_A Uvrabc system protein A 29.6 18 0.00061 32.8 1.3 23 41-63 250-285 (916)
65 1klr_A Zinc finger Y-chromosom 29.5 23 0.00077 15.8 1.1 10 102-111 3-12 (30)
66 1ee8_A MUTM (FPG) protein; bet 29.2 28 0.00094 26.8 2.1 13 98-110 252-264 (266)
67 1p7a_A BF3, BKLF, kruppel-like 28.8 23 0.0008 17.1 1.2 11 101-111 11-21 (37)
68 2lvu_A Zinc finger and BTB dom 34.8 12 0.00041 16.9 0.0 10 102-111 3-12 (26)
69 2ysm_A Myeloid/lymphoid or mix 27.9 75 0.0026 20.7 3.9 23 38-60 5-31 (111)
70 3w0f_A Endonuclease 8-like 3; 27.6 28 0.00095 27.8 1.9 19 92-110 253-282 (287)
71 2m0d_A Zinc finger and BTB dom 27.2 25 0.00085 15.7 1.0 10 101-110 3-12 (30)
72 3ts2_A Protein LIN-28 homolog 26.4 41 0.0014 23.8 2.5 19 90-108 119-139 (148)
73 1tfi_A Transcriptional elongat 26.0 29 0.00098 20.9 1.4 13 51-63 9-21 (50)
74 1pfi_A Major coat protein of P 25.0 31 0.001 21.4 1.4 15 7-21 20-34 (46)
75 2r6f_A Excinuclease ABC subuni 24.9 41 0.0014 31.0 2.8 11 42-52 755-765 (972)
76 2kvg_A Zinc finger and BTB dom 24.8 18 0.00062 16.6 0.2 10 101-110 3-12 (27)
77 2elr_A Zinc finger protein 406 24.7 28 0.00096 16.6 1.0 11 101-111 9-19 (36)
78 2elx_A Zinc finger protein 406 24.5 28 0.00096 16.4 1.0 10 101-110 7-16 (35)
79 2els_A Zinc finger protein 406 24.3 29 0.001 16.7 1.0 10 101-110 9-18 (36)
80 2ygr_A Uvrabc system protein A 24.2 26 0.00089 32.4 1.4 26 38-63 273-312 (993)
81 1z60_A TFIIH basal transcripti 24.2 21 0.00072 22.5 0.5 19 91-109 16-38 (59)
82 3u50_C Telomerase-associated p 23.7 27 0.00093 25.8 1.2 20 91-110 43-68 (172)
83 1m2k_A Silent information regu 23.4 20 0.00068 27.0 0.4 25 74-98 100-129 (249)
84 2kfq_A FP1; protein, de novo p 23.4 26 0.0009 16.8 0.7 9 102-110 3-11 (32)
85 2elp_A Zinc finger protein 406 23.1 31 0.0011 16.7 1.0 10 101-110 9-18 (37)
86 1rim_A E6APC2 peptide; E6-bind 23.0 33 0.0011 16.6 1.1 10 102-111 3-12 (33)
87 2elq_A Zinc finger protein 406 22.8 32 0.0011 16.6 1.0 10 101-110 9-18 (36)
88 1a1t_A Nucleocapsid protein; s 22.8 38 0.0013 19.8 1.5 14 90-103 33-46 (55)
89 2elm_A Zinc finger protein 406 22.4 38 0.0013 16.7 1.3 10 101-110 9-18 (37)
90 3u6p_A Formamidopyrimidine-DNA 22.1 38 0.0013 26.1 1.7 18 92-109 247-273 (273)
91 3pih_A Uvrabc system protein A 22.0 30 0.001 31.3 1.3 18 35-52 268-285 (916)
92 1yc5_A NAD-dependent deacetyla 21.7 23 0.0008 26.5 0.5 25 74-98 100-129 (246)
93 2gmg_A Hypothetical protein PF 21.5 41 0.0014 23.6 1.7 18 32-49 52-76 (105)
94 1x4s_A Protein FON, zinc finge 21.1 53 0.0018 20.9 2.0 20 90-109 11-34 (59)
95 1k82_A Formamidopyrimidine-DNA 21.0 41 0.0014 25.8 1.7 12 98-109 257-268 (268)
96 1twf_L ABC10-alpha, DNA-direct 20.4 40 0.0014 21.7 1.3 19 91-109 29-53 (70)
97 2ytb_A Zinc finger protein 32; 20.3 45 0.0015 16.5 1.3 11 101-111 11-21 (42)
98 3k1f_M Transcription initiatio 20.2 41 0.0014 26.3 1.5 19 90-108 21-49 (197)
99 2lvr_A Zinc finger and BTB dom 25.5 22 0.00075 16.1 0.0 10 102-111 4-13 (30)
100 2lvt_A Zinc finger and BTB dom 25.5 22 0.00075 16.2 0.0 10 102-111 3-12 (29)
No 1
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.34 E-value=4.6e-07 Score=61.26 Aligned_cols=54 Identities=31% Similarity=0.783 Sum_probs=42.8
Q ss_pred ccccccccCCcc------eEEcCCCccceeeecC-CccccccccccCCCCCccccccceeeccCCCCccce---eCCCCC
Q 033690 39 SLGMCKKCGDVG------MIACSRCKGMGLIKSN-GLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF---CCPGCS 108 (113)
Q Consensus 39 sL~mCk~Cggl~------~vaCsrCKGtG~Ik~g-g~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~---~CP~Cs 108 (113)
....|+.|+|.+ ...|+.|+|+|.+... |+|. ...+|+.|+|+|.+ +|+.|.
T Consensus 27 ~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~~~~~~G~~~------------------~~~~C~~C~G~G~~i~~~C~~C~ 88 (104)
T 2ctt_A 27 IMDTCERCNGKGNEPGTKVQHCHYCGGSGMETINTGPFV------------------MRSTCRRCGGRGSIIISPCVVCR 88 (104)
T ss_dssp CCEECSSSSSSSSCTTCCCEECSSSSSSCEEEEEETTEE------------------EEEECSSSSSSSEECSSCCSSSS
T ss_pred eeeECCCCcCCccCCCCCCccCCCCCCCEEEEEEeCCEE------------------EEEECCcCCCcceECCCcCCCCC
Confidence 347899999987 5899999999988543 3321 26789999999998 899996
Q ss_pred CC
Q 033690 109 NK 110 (113)
Q Consensus 109 k~ 110 (113)
..
T Consensus 89 G~ 90 (104)
T 2ctt_A 89 GA 90 (104)
T ss_dssp SC
T ss_pred Ce
Confidence 53
No 2
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=98.30 E-value=3e-07 Score=58.76 Aligned_cols=54 Identities=31% Similarity=0.864 Sum_probs=42.8
Q ss_pred ccccccccCCcce------EEcCCCccceeeec-CCccccccccccCCCCCccccccceeeccCCCCccce---eCCCCC
Q 033690 39 SLGMCKKCGDVGM------IACSRCKGMGLIKS-NGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF---CCPGCS 108 (113)
Q Consensus 39 sL~mCk~Cggl~~------vaCsrCKGtG~Ik~-gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~---~CP~Cs 108 (113)
....|++|++.+. ..|+.|+|+|.+.. .|.|. ...+|++|+|.|.. +|+.|.
T Consensus 10 ~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~------------------~~~~C~~C~G~G~~~~~~C~~C~ 71 (79)
T 1exk_A 10 TLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQGFFA------------------VQQTCPHCQGRGTLIKDPCNKCH 71 (79)
T ss_dssp CEEECGGGTTTSBCSSSCCEECTTTTTSSEEEEEETTEE------------------EEEECTTTTTSSEECSSBCGGGT
T ss_pred cceECCCCcccccCCCccCCCCCCCcCeEEEEEEcCCCE------------------EeeECcCCCCccEECCCcCCCCC
Confidence 3468999999985 68999999999854 23321 25789999999999 999996
Q ss_pred CC
Q 033690 109 NK 110 (113)
Q Consensus 109 k~ 110 (113)
..
T Consensus 72 G~ 73 (79)
T 1exk_A 72 GH 73 (79)
T ss_dssp TS
T ss_pred Ce
Confidence 54
No 3
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=98.10 E-value=1e-06 Score=67.79 Aligned_cols=58 Identities=29% Similarity=0.697 Sum_probs=43.8
Q ss_pred cccccccCCcc-----eEEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCcc-----ceeCCCCCC
Q 033690 40 LGMCKKCGDVG-----MIACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRG-----HFCCPGCSN 109 (113)
Q Consensus 40 L~mCk~Cggl~-----~vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG-----~~~CP~Csk 109 (113)
...|++|++.+ ...|+.|+|+|.+...-..++ |+ .+.+.+|++|+|+| .-+|+.|..
T Consensus 38 ~~~C~~C~G~G~~~g~~~~C~~C~G~G~~~~~~~~g~-~~------------~~~~~~C~~C~G~G~~i~~~~~C~~C~G 104 (248)
T 1nlt_A 38 QILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMGP-MI------------QRFQTECDVCHGTGDIIDPKDRCKSCNG 104 (248)
T ss_dssp EEECTTTTTCSBSTTTCCCCTTSSSSSCEEEEEESSS-EE------------EEEECSCTTCSSSSSCCCTTSBCSSSTT
T ss_pred EEeCCCCcCccCCCCCCccCCCCCCCcEEEEEEecCc-eE------------EEEEEcCCCCCCcCEEeccCCCCcccCC
Confidence 36899999988 578999999999854433333 21 12367899999999 677999965
Q ss_pred C
Q 033690 110 K 110 (113)
Q Consensus 110 ~ 110 (113)
.
T Consensus 105 ~ 105 (248)
T 1nlt_A 105 K 105 (248)
T ss_dssp S
T ss_pred C
Confidence 4
No 4
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=97.25 E-value=0.0002 Score=45.42 Aligned_cols=39 Identities=31% Similarity=0.819 Sum_probs=32.3
Q ss_pred cccccccCCcceE-----------EcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCcccee
Q 033690 40 LGMCKKCGDVGMI-----------ACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHFC 103 (113)
Q Consensus 40 L~mCk~Cggl~~v-----------aCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~~ 103 (113)
...|+.|+|.+.+ .|+.|+|+|.+.+ .+|++|.|.|...
T Consensus 28 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~-------------------------~~C~~C~G~G~~~ 77 (79)
T 1exk_A 28 PQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLIK-------------------------DPCNKCHGHGRVE 77 (79)
T ss_dssp CEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEECS-------------------------SBCGGGTTSSEEE
T ss_pred CCCCCCCcCeEEEEEEcCCCEEeeECcCCCCccEECC-------------------------CcCCCCCCeEEEe
Confidence 4589999999965 7999999998742 3799999999763
No 5
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.14 E-value=0.00035 Score=46.95 Aligned_cols=40 Identities=38% Similarity=0.831 Sum_probs=31.9
Q ss_pred ccccccccCCcceE-----------EcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCcccee
Q 033690 39 SLGMCKKCGDVGMI-----------ACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHFC 103 (113)
Q Consensus 39 sL~mCk~Cggl~~v-----------aCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~~ 103 (113)
....|+.|++.+++ .|+.|.|+|.+.+ .+|++|.|.|...
T Consensus 44 ~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i~-------------------------~~C~~C~G~G~v~ 94 (104)
T 2ctt_A 44 KVQHCHYCGGSGMETINTGPFVMRSTCRRCGGRGSIII-------------------------SPCVVCRGAGQAK 94 (104)
T ss_dssp CCEECSSSSSSCEEEEEETTEEEEEECSSSSSSSEECS-------------------------SCCSSSSSCSEEC
T ss_pred CCccCCCCCCCEEEEEEeCCEEEEEECCcCCCcceECC-------------------------CcCCCCCCeeEEE
Confidence 34679999999865 7999999998642 3799999999763
No 6
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=96.07 E-value=0.0028 Score=48.62 Aligned_cols=39 Identities=28% Similarity=0.688 Sum_probs=27.9
Q ss_pred ccccccCCcceE---------------EcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce
Q 033690 41 GMCKKCGDVGMI---------------ACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF 102 (113)
Q Consensus 41 ~mCk~Cggl~~v---------------aCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~ 102 (113)
..|+.|+|.+.+ .|+.|.|+|.+-.. ..+|++|.|+|..
T Consensus 55 ~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~~-----------------------~~~C~~C~G~g~~ 108 (248)
T 1nlt_A 55 KKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDP-----------------------KDRCKSCNGKKVE 108 (248)
T ss_dssp CCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCCT-----------------------TSBCSSSTTSCEE
T ss_pred ccCCCCCCCcEEEEEEecCceEEEEEEcCCCCCCcCEEecc-----------------------CCCCcccCCCceE
Confidence 678888887754 58888888866421 2368888888764
No 7
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=94.80 E-value=0.017 Score=36.04 Aligned_cols=26 Identities=31% Similarity=0.823 Sum_probs=21.5
Q ss_pred ccccccCCcce---EEcCCCccceeeecC
Q 033690 41 GMCKKCGDVGM---IACSRCKGMGLIKSN 66 (113)
Q Consensus 41 ~mCk~Cggl~~---vaCsrCKGtG~Ik~g 66 (113)
..|++|+|.+. -.|+.|+|.|.|+..
T Consensus 10 ~~C~~C~GsG~~i~~~C~~C~G~G~v~~~ 38 (53)
T 3lcz_A 10 TTCPNCNGSGREEPEPCPKCLGKGVILTA 38 (53)
T ss_dssp EECTTTTTSCEETTEECTTTTTSSEEECH
T ss_pred ccCcCCcccccCCCCcCCCCCCcEEEEEE
Confidence 46999999998 469999999998554
No 8
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=94.42 E-value=0.027 Score=35.11 Aligned_cols=24 Identities=42% Similarity=1.009 Sum_probs=14.6
Q ss_pred cccccCCcceE---EcCCCccceeeec
Q 033690 42 MCKKCGDVGMI---ACSRCKGMGLIKS 65 (113)
Q Consensus 42 mCk~Cggl~~v---aCsrCKGtG~Ik~ 65 (113)
.|+.|+|.+.+ .|+.|+|.|+|..
T Consensus 11 ~C~~C~GsG~~~~~~C~~C~G~G~v~~ 37 (53)
T 2bx9_A 11 ACPKCERAGEIEGTPCPACSGKGVILT 37 (53)
T ss_dssp ECTTTTTSSEETTEECTTTTTSSEEEC
T ss_pred cCCCCcceeccCCCCCccCCCCccEEE
Confidence 46666666543 4666666666654
No 9
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=93.61 E-value=0.043 Score=34.20 Aligned_cols=27 Identities=33% Similarity=0.917 Sum_probs=22.7
Q ss_pred eEEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce
Q 033690 51 MIACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF 102 (113)
Q Consensus 51 ~vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~ 102 (113)
...|+.|.|+|.+. ..+|++|.|.|..
T Consensus 9 ~~~C~~C~GsG~~~-------------------------~~~C~~C~G~G~v 35 (53)
T 2bx9_A 9 EVACPKCERAGEIE-------------------------GTPCPACSGKGVI 35 (53)
T ss_dssp EEECTTTTTSSEET-------------------------TEECTTTTTSSEE
T ss_pred cccCCCCcceeccC-------------------------CCCCccCCCCccE
Confidence 56899999999872 2589999999975
No 10
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=93.13 E-value=0.039 Score=34.41 Aligned_cols=12 Identities=33% Similarity=0.872 Sum_probs=7.2
Q ss_pred EEcCCCccceee
Q 033690 52 IACSRCKGMGLI 63 (113)
Q Consensus 52 vaCsrCKGtG~I 63 (113)
..|+.|.|+|.+
T Consensus 10 ~~C~~C~GsG~~ 21 (53)
T 3lcz_A 10 TTCPNCNGSGRE 21 (53)
T ss_dssp EECTTTTTSCEE
T ss_pred ccCcCCcccccC
Confidence 456666666654
No 11
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=80.08 E-value=0.76 Score=27.05 Aligned_cols=11 Identities=36% Similarity=1.026 Sum_probs=6.8
Q ss_pred ccceeCCCCCC
Q 033690 99 RGHFCCPGCSN 109 (113)
Q Consensus 99 kG~~~CP~Csk 109 (113)
.|.+.|+.|+-
T Consensus 22 ~gelvC~~CG~ 32 (50)
T 1pft_A 22 RGEIVCAKCGY 32 (50)
T ss_dssp TTEEEESSSCC
T ss_pred CCeEECcccCC
Confidence 35666777654
No 12
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=78.22 E-value=3.8 Score=28.43 Aligned_cols=25 Identities=16% Similarity=0.664 Sum_probs=17.7
Q ss_pred ccccccccCCcc-----------eEEcCCCccceee
Q 033690 39 SLGMCKKCGDVG-----------MIACSRCKGMGLI 63 (113)
Q Consensus 39 sL~mCk~Cggl~-----------~vaCsrCKGtG~I 63 (113)
++.-|++||++= +..|..|.-.-.+
T Consensus 3 ~~~FCp~CgnlL~~~~~~~~~~~~~~C~~C~y~~~~ 38 (122)
T 1twf_I 3 TFRFCRDCNNMLYPREDKENNRLLFECRTCSYVEEA 38 (122)
T ss_dssp CCCBCSSSCCBCEEEEETTTTEEEEECSSSSCEEEC
T ss_pred CCCcccccCccCcccccCcCCCCEEECCcCCCeeec
Confidence 466799998753 4789999765443
No 13
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=75.39 E-value=9 Score=26.14 Aligned_cols=73 Identities=14% Similarity=0.330 Sum_probs=37.2
Q ss_pred ccccccccCCcc-----------eEEcCCCccceeeecC-----Cccc-cccccccCCCCCc-cccccceeeccCCCCcc
Q 033690 39 SLGMCKKCGDVG-----------MIACSRCKGMGLIKSN-----GLFG-FSIMDELYPPLDG-AESQMKSIGCSKCKGRG 100 (113)
Q Consensus 39 sL~mCk~Cggl~-----------~vaCsrCKGtG~Ik~g-----g~f~-f~~~ddiyes~g~-~~~~~~~v~C~kCqgkG 100 (113)
++.-|++|+++= +..|..|-=.=.+... -.+. -.-.+++.+..++ .+.....++||+|..+.
T Consensus 3 ~m~FCp~Cgn~L~~~~~~~~~~~~~~C~~C~y~~~~~~~~v~~~~~~~~~~e~~~v~~~~~~~~tlp~~~~~Cp~C~~~~ 82 (113)
T 3h0g_I 3 NFQYCIECNNMLYPREDKVDRVLRLACRNCDYSEIAATSKVYRHELQSSNVENTTVSHDASTDPTLPRSDKECPRCHQHE 82 (113)
T ss_dssp CCCCCSSSCCCCEECCCTTTCCCCEECSSSCCEECCSCSEEEECCCCSCSCTTCTTCTTSTTCSSSCBCCSCCSSSCCSC
T ss_pred cceeCcCCCCEeeEcccCCCCeeEEECCCCCCeEEcCCCeEEEEEEecccccccceeccccccccCCCcccCCCCCCCce
Confidence 356688887652 5788888543322211 0000 0112334332221 12222337899997653
Q ss_pred -----------------ceeCCCCCCCC
Q 033690 101 -----------------HFCCPGCSNKP 111 (113)
Q Consensus 101 -----------------~~~CP~Csk~~ 111 (113)
-+.|++|+.+.
T Consensus 83 a~~~q~q~rsade~mt~fy~C~~C~~~w 110 (113)
T 3h0g_I 83 AVFYQTHSRRGDTMMTLIYVCVHCGFAF 110 (113)
T ss_dssp EEEECCCCSSCCCCCCCEEEESSSCCCC
T ss_pred EEEEEEecccCCCCCeeEEEcCCCCCEE
Confidence 26688887654
No 14
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=63.70 E-value=3.4 Score=24.16 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=17.0
Q ss_pred CCCchhhhhhhhhhHHHhhhhhc
Q 033690 2 EGLTASEVAGFGVGTVLLCATIA 24 (113)
Q Consensus 2 ~~~t~seiagf~vg~lll~atia 24 (113)
.+|+...|||.+||.++--+-|+
T Consensus 6 ~~ls~GaIAGiVvG~v~gv~li~ 28 (38)
T 2k1k_A 6 RGLTGGEIVAVIFGLLLGAALLL 28 (38)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCceeeeehHHHHHHHHHH
Confidence 35788899999999876554444
No 15
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=60.56 E-value=5.9 Score=23.81 Aligned_cols=8 Identities=38% Similarity=1.248 Sum_probs=3.9
Q ss_pred EEcCCCcc
Q 033690 52 IACSRCKG 59 (113)
Q Consensus 52 vaCsrCKG 59 (113)
+.||+|+.
T Consensus 16 ~~Cp~Cg~ 23 (57)
T 1qyp_A 16 ITCPKCGN 23 (57)
T ss_dssp CCCTTTCC
T ss_pred eECCCCCC
Confidence 44555544
No 16
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=57.10 E-value=5.5 Score=26.24 Aligned_cols=20 Identities=35% Similarity=0.883 Sum_probs=15.9
Q ss_pred eeeccCCCCccce-------eCCCCCC
Q 033690 90 SIGCSKCKGRGHF-------CCPGCSN 109 (113)
Q Consensus 90 ~v~C~kCqgkG~~-------~CP~Csk 109 (113)
.+.|.||..+... .||.|+-
T Consensus 37 ~I~CnDC~~~s~v~~h~lg~kC~~C~S 63 (79)
T 2k2d_A 37 DILCNDCNGRSTVQFHILGMKCKICES 63 (79)
T ss_dssp EEEESSSCCEEEEECCTTCCCCTTTSC
T ss_pred EEECCCCCCCccCCceeecccCcCCCC
Confidence 4789999998754 7999963
No 17
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=55.47 E-value=5.5 Score=25.67 Aligned_cols=11 Identities=36% Similarity=1.132 Sum_probs=7.3
Q ss_pred cceEEcCCCcc
Q 033690 49 VGMIACSRCKG 59 (113)
Q Consensus 49 l~~vaCsrCKG 59 (113)
+.+++||.|||
T Consensus 6 L~iL~CP~ck~ 16 (68)
T 2hf1_A 6 LEILVCPLCKG 16 (68)
T ss_dssp EEECBCTTTCC
T ss_pred hhheECCCCCC
Confidence 34567777775
No 18
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=54.70 E-value=5.6 Score=25.62 Aligned_cols=11 Identities=27% Similarity=0.803 Sum_probs=7.2
Q ss_pred cceEEcCCCcc
Q 033690 49 VGMIACSRCKG 59 (113)
Q Consensus 49 l~~vaCsrCKG 59 (113)
+.+++||.|||
T Consensus 6 L~iL~CP~ck~ 16 (68)
T 2jr6_A 6 LDILVCPVTKG 16 (68)
T ss_dssp SCCCBCSSSCC
T ss_pred hhheECCCCCC
Confidence 34567777775
No 19
>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal binding protein; NMR {Homo sapiens}
Probab=53.42 E-value=7.2 Score=23.64 Aligned_cols=28 Identities=25% Similarity=0.547 Sum_probs=19.5
Q ss_pred hhhhhcccccccccCCcceEEcCCCccc
Q 033690 33 SASQRSSLGMCKKCGDVGMIACSRCKGM 60 (113)
Q Consensus 33 ~~sqr~sL~mCk~Cggl~~vaCsrCKGt 60 (113)
++.|-.....|..|+......|++|+-.
T Consensus 6 ~~~~~~~~~~C~~C~~~~~~~Cs~C~~v 33 (60)
T 2od1_A 6 GSPNSDSSESCWNCGRKASETCSGCNTA 33 (60)
T ss_dssp -----CCSSCCTTTSSCCCEECTTTSCC
T ss_pred cCcCCCCCCccccCCCcccccCCCCCCe
Confidence 3445555678999999999999999864
No 20
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=51.54 E-value=18 Score=23.19 Aligned_cols=18 Identities=28% Similarity=0.765 Sum_probs=9.3
Q ss_pred eccCCCC-------ccceeCCCCCC
Q 033690 92 GCSKCKG-------RGHFCCPGCSN 109 (113)
Q Consensus 92 ~C~kCqg-------kG~~~CP~Csk 109 (113)
-||+|+. .-...||.|+.
T Consensus 27 wCP~C~~~~~~~~~~~~v~C~~C~~ 51 (86)
T 2ct7_A 27 WCAQCSFGFIYEREQLEATCPQCHQ 51 (86)
T ss_dssp CCSSSCCCEECCCSCSCEECTTTCC
T ss_pred ECcCCCchheecCCCCceEeCCCCC
Confidence 3666655 12345666653
No 21
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=51.50 E-value=5.9 Score=29.47 Aligned_cols=20 Identities=25% Similarity=0.881 Sum_probs=16.2
Q ss_pred eeeccCCCCc------cceeCCCCCC
Q 033690 90 SIGCSKCKGR------GHFCCPGCSN 109 (113)
Q Consensus 90 ~v~C~kCqgk------G~~~CP~Csk 109 (113)
+-+||+|++- ..+-||+|+.
T Consensus 27 lP~CP~C~seytYeDg~l~vCPeC~h 52 (138)
T 2akl_A 27 LPPCPQCNSEYTYEDGALLVCPECAH 52 (138)
T ss_dssp SCCCTTTCCCCCEECSSSEEETTTTE
T ss_pred CCCCCCCCCcceEecCCeEECCcccc
Confidence 5679999874 5789999974
No 22
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=51.10 E-value=8.4 Score=23.35 Aligned_cols=20 Identities=25% Similarity=0.745 Sum_probs=13.8
Q ss_pred ceeeccCCCC-------ccceeCCCCC
Q 033690 89 KSIGCSKCKG-------RGHFCCPGCS 108 (113)
Q Consensus 89 ~~v~C~kCqg-------kG~~~CP~Cs 108 (113)
...-||+|-+ ..++.|++|+
T Consensus 18 ~~k~CP~CG~~~fm~~~~~R~~C~kCG 44 (50)
T 3j20_Y 18 KNKFCPRCGPGVFMADHGDRWACGKCG 44 (50)
T ss_dssp SSEECSSSCSSCEEEECSSEEECSSSC
T ss_pred ecccCCCCCCceEEecCCCeEECCCCC
Confidence 3445888855 5677888886
No 23
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=50.99 E-value=6.6 Score=17.79 Aligned_cols=10 Identities=20% Similarity=0.737 Sum_probs=7.5
Q ss_pred ceeCCCCCCC
Q 033690 101 HFCCPGCSNK 110 (113)
Q Consensus 101 ~~~CP~Csk~ 110 (113)
.+.|+.|++.
T Consensus 2 ~~~C~~C~k~ 11 (29)
T 2m0f_A 2 PLKCRECGKQ 11 (29)
T ss_dssp CEECTTTSCE
T ss_pred CccCCCCCCc
Confidence 5778888874
No 24
>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}
Probab=50.80 E-value=2.9 Score=29.02 Aligned_cols=55 Identities=4% Similarity=0.012 Sum_probs=28.8
Q ss_pred cceEEcCCCccceeeecCCccccccccccCCCC-CccccccceeeccCCCCccceeCCCCCC
Q 033690 49 VGMIACSRCKGMGLIKSNGLFGFSIMDELYPPL-DGAESQMKSIGCSKCKGRGHFCCPGCSN 109 (113)
Q Consensus 49 l~~vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~-g~~~~~~~~v~C~kCqgkG~~~CP~Csk 109 (113)
+-+++||.|||.=..-.. ..++.+|..+ ++.....+..+|.+|.. |.+-||+|+.
T Consensus 6 LdILaCP~cK~pL~l~~~-----~~~~~~~ca~~~~~~~~~~~~~~~e~~~-~~LvC~~c~~ 61 (97)
T 2k5r_A 6 LHLLCSPDTRQPLSLLES-----KGLEALNKAIVSGTVQRADGSIQNQSLH-EALITRDRKQ 61 (97)
T ss_dssp CSSCCCCTTSSCCEECCH-----HHHHHHHHHHHHTCCBCTTSCBCCCCCS-EEEECTTSCE
T ss_pred hhheECCCCCCccccccc-----chhhhhhhhhhccccccccccccccccC-CeEEcCCCCC
Confidence 456899999984332111 0111123222 22233344456766654 6788998864
No 25
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=50.23 E-value=6.5 Score=25.38 Aligned_cols=11 Identities=45% Similarity=1.223 Sum_probs=7.3
Q ss_pred cceEEcCCCcc
Q 033690 49 VGMIACSRCKG 59 (113)
Q Consensus 49 l~~vaCsrCKG 59 (113)
+..++||.|||
T Consensus 6 LeiL~CP~ck~ 16 (69)
T 2pk7_A 6 LDILACPICKG 16 (69)
T ss_dssp GGTCCCTTTCC
T ss_pred HhheeCCCCCC
Confidence 34567777775
No 26
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=48.45 E-value=7.8 Score=25.05 Aligned_cols=12 Identities=33% Similarity=1.021 Sum_probs=8.1
Q ss_pred cceEEcCCCccc
Q 033690 49 VGMIACSRCKGM 60 (113)
Q Consensus 49 l~~vaCsrCKGt 60 (113)
+.+++||.|||.
T Consensus 6 L~iL~CP~ck~~ 17 (70)
T 2js4_A 6 LDILVCPVCKGR 17 (70)
T ss_dssp CCCCBCTTTCCB
T ss_pred hhheECCCCCCc
Confidence 346678888773
No 27
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=48.22 E-value=8.6 Score=23.76 Aligned_cols=20 Identities=20% Similarity=0.785 Sum_probs=12.7
Q ss_pred eeeccCCCCc-----cceeCC--CCCC
Q 033690 90 SIGCSKCKGR-----GHFCCP--GCSN 109 (113)
Q Consensus 90 ~v~C~kCqgk-----G~~~CP--~Csk 109 (113)
...||.|++. |.+.|+ +|+.
T Consensus 10 iL~CP~c~~~L~~~~~~L~C~~~~c~~ 36 (56)
T 2kpi_A 10 ILACPACHAPLEERDAELICTGQDCGL 36 (56)
T ss_dssp SCCCSSSCSCEEEETTEEEECSSSCCC
T ss_pred heeCCCCCCcceecCCEEEcCCcCCCc
Confidence 3456666665 777777 7764
No 28
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=47.82 E-value=11 Score=21.04 Aligned_cols=14 Identities=29% Similarity=0.662 Sum_probs=11.2
Q ss_pred eeeccCCCCcccee
Q 033690 90 SIGCSKCKGRGHFC 103 (113)
Q Consensus 90 ~v~C~kCqgkG~~~ 103 (113)
...|..|...|++.
T Consensus 21 ~~~C~~Cg~~GH~~ 34 (39)
T 2a51_A 21 QEGCWNCGSKEHRF 34 (39)
T ss_dssp CSSCTTTCCSSSCT
T ss_pred CCccccCCCCCCcc
Confidence 46799999999864
No 29
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.43 E-value=9.6 Score=23.98 Aligned_cols=12 Identities=33% Similarity=0.852 Sum_probs=7.1
Q ss_pred cceeCCCCCCCC
Q 033690 100 GHFCCPGCSNKP 111 (113)
Q Consensus 100 G~~~CP~Csk~~ 111 (113)
|.+.||+|..+.
T Consensus 11 ~~~~CPrCn~~f 22 (49)
T 2e72_A 11 GRKICPRCNAQF 22 (49)
T ss_dssp SCCCCTTTCCCC
T ss_pred CceeCCcccccc
Confidence 566666666543
No 30
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=45.19 E-value=16 Score=20.75 Aligned_cols=12 Identities=33% Similarity=0.841 Sum_probs=8.9
Q ss_pred ccceeCCCCCCC
Q 033690 99 RGHFCCPGCSNK 110 (113)
Q Consensus 99 kG~~~CP~Csk~ 110 (113)
...|.|+.|++.
T Consensus 37 ~k~~~C~~C~k~ 48 (62)
T 1vd4_A 37 TGTFRCTFCHTE 48 (62)
T ss_dssp TTEEBCSSSCCB
T ss_pred CCCEECCCCCCc
Confidence 456888888875
No 31
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=45.18 E-value=10 Score=23.29 Aligned_cols=10 Identities=40% Similarity=1.235 Sum_probs=6.4
Q ss_pred ccceeCCCCC
Q 033690 99 RGHFCCPGCS 108 (113)
Q Consensus 99 kG~~~CP~Cs 108 (113)
.|-+.|++|+
T Consensus 28 ~ge~vC~~CG 37 (58)
T 1dl6_A 28 AGDMICPECG 37 (58)
T ss_dssp SCCEECTTTC
T ss_pred CCeEEeCCCC
Confidence 4666677765
No 32
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=43.88 E-value=10 Score=24.44 Aligned_cols=11 Identities=36% Similarity=0.878 Sum_probs=7.4
Q ss_pred cceEEcCCCcc
Q 033690 49 VGMIACSRCKG 59 (113)
Q Consensus 49 l~~vaCsrCKG 59 (113)
+.+++||.|||
T Consensus 8 LeiL~CP~ck~ 18 (67)
T 2jny_A 8 LEVLACPKDKG 18 (67)
T ss_dssp TCCCBCTTTCC
T ss_pred HHHhCCCCCCC
Confidence 34567777776
No 33
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.53 E-value=19 Score=22.65 Aligned_cols=20 Identities=25% Similarity=0.859 Sum_probs=16.8
Q ss_pred eeeccCCCCccceeCCCCCC
Q 033690 90 SIGCSKCKGRGHFCCPGCSN 109 (113)
Q Consensus 90 ~v~C~kCqgkG~~~CP~Csk 109 (113)
...|.-|.-...+.||+|.-
T Consensus 12 ~~~C~vC~~~~kY~CPrC~~ 31 (56)
T 2yqq_A 12 TVVCVICLEKPKYRCPACRV 31 (56)
T ss_dssp CCCCTTTCSCCSEECTTTCC
T ss_pred CCccCcCcCCCeeeCCCCCC
Confidence 44699999999999999974
No 34
>1hxr_A Guanine nucleotide exchange factor MSS4; RAB GTPase, membrane trafficking, Zn binding site, metal binding protein; 1.65A {Rattus norvegicus} SCOP: b.88.1.1 PDB: 1fwq_A 2fu5_A
Probab=42.57 E-value=22 Score=24.85 Aligned_cols=35 Identities=14% Similarity=0.484 Sum_probs=17.6
Q ss_pred ccccccccCCCCCccccccceeeccCCCCccceeCCCCCCCC
Q 033690 70 GFSIMDELYPPLDGAESQMKSIGCSKCKGRGHFCCPGCSNKP 111 (113)
Q Consensus 70 ~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~~CP~Csk~~ 111 (113)
.|-+++|+|. +.+ ..-.+.+. ..=++.|.+|.++|
T Consensus 59 ~fw~V~Dm~~-FeN-IGfs~~v~-----~~KyL~CadCe~GP 93 (115)
T 1hxr_A 59 EHWLVNDMFI-FEN-VGFTKDVG-----NVKFLVCADCEIGP 93 (115)
T ss_dssp CEEEESCGGG-CSS-CEECCCBT-----TEEEEECTTTCCBC
T ss_pred eEEeccCccc-ccc-ceeccccC-----CcCEecccCCCCCC
Confidence 3667888865 222 11111221 35566666666665
No 35
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=41.91 E-value=23 Score=21.71 Aligned_cols=19 Identities=21% Similarity=0.732 Sum_probs=14.1
Q ss_pred eeeccCCCC-------ccceeCCCCC
Q 033690 90 SIGCSKCKG-------RGHFCCPGCS 108 (113)
Q Consensus 90 ~v~C~kCqg-------kG~~~CP~Cs 108 (113)
..-||+|-+ ++++.|+.|+
T Consensus 18 ~~fCPkCG~~~~ma~~~dr~~C~kCg 43 (55)
T 2k4x_A 18 HRFCPRCGPGVFLAEHADRYSCGRCG 43 (55)
T ss_dssp SCCCTTTTTTCCCEECSSEEECTTTC
T ss_pred cccCcCCCCceeEeccCCEEECCCCC
Confidence 456888865 5678888885
No 36
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=41.74 E-value=3.1 Score=35.78 Aligned_cols=28 Identities=29% Similarity=0.649 Sum_probs=22.6
Q ss_pred EEcCCCccceeeecCCccccccccccCC
Q 033690 52 IACSRCKGMGLIKSNGLFGFSIMDELYP 79 (113)
Q Consensus 52 vaCsrCKGtG~Ik~gg~f~f~~~ddiye 79 (113)
..||.|.|+|.|++-..+++.++.+|.+
T Consensus 409 ~~Cp~C~G~G~v~s~~~~~~~i~R~i~~ 436 (517)
T 2bx2_L 409 HVCPRCSGTGTVRDNESLSLSILRLIEE 436 (517)
T ss_dssp CCCSSSSSSSCCCCHHHHHHHHHHHHHH
T ss_pred CcCCCcCCceeECCHHHHHHHHHHHHHH
Confidence 3699999999999888888777776644
No 37
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=39.83 E-value=33 Score=22.92 Aligned_cols=15 Identities=47% Similarity=1.105 Sum_probs=12.6
Q ss_pred ceeeccCCCCcccee
Q 033690 89 KSIGCSKCKGRGHFC 103 (113)
Q Consensus 89 ~~v~C~kCqgkG~~~ 103 (113)
..+.|.+|..+|+|.
T Consensus 104 ~~~~Cy~Cg~~GH~a 118 (124)
T 2lli_A 104 HTIYCYNCGGKGHFG 118 (124)
T ss_dssp CCCCTTTTSSSCTTT
T ss_pred CCCCcCCCCCCCcCc
Confidence 468899999999974
No 38
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=39.65 E-value=22 Score=23.06 Aligned_cols=28 Identities=21% Similarity=0.578 Sum_probs=20.1
Q ss_pred CccccccceeeccCCCCc-cc--eeCCCCCCC
Q 033690 82 DGAESQMKSIGCSKCKGR-GH--FCCPGCSNK 110 (113)
Q Consensus 82 g~~~~~~~~v~C~kCqgk-G~--~~CP~Csk~ 110 (113)
+.+.++.....|+.|.-+ |. |.| +|++.
T Consensus 7 ~~~~~~~~~~rC~~C~kkvgl~~f~C-rCg~~ 37 (64)
T 1wg2_A 7 GPSRPVRPNNRCFSCNKKVGVMGFKC-KCGST 37 (64)
T ss_dssp CSSCCSCCSCSCTTTCCCCTTSCEEC-TTSCE
T ss_pred CCCCCCCcCCcChhhCCcccccCeEe-ecCCE
Confidence 344556667789999987 54 789 89863
No 39
>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding domain, transcription, alternative splicing, DI mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1
Probab=38.51 E-value=18 Score=20.76 Aligned_cols=25 Identities=24% Similarity=0.674 Sum_probs=14.9
Q ss_pred ccccceeeccCCCCccceeCCCCCC
Q 033690 85 ESQMKSIGCSKCKGRGHFCCPGCSN 109 (113)
Q Consensus 85 ~~~~~~v~C~kCqgkG~~~CP~Csk 109 (113)
++......|..|.-...+.|..|..
T Consensus 4 ~~~~~~~~C~~C~~~~~~~C~~C~~ 28 (52)
T 2jw6_A 4 DAERKEQSCVNCGREAMSECTGCHK 28 (52)
T ss_dssp -------CCSSSSSSCSEECTTTCS
T ss_pred CccccCCcCCCCCCCCcCcCCCCCC
Confidence 3444466788888888888988864
No 40
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=38.42 E-value=19 Score=20.97 Aligned_cols=14 Identities=43% Similarity=0.876 Sum_probs=11.4
Q ss_pred eeeccCCCCcccee
Q 033690 90 SIGCSKCKGRGHFC 103 (113)
Q Consensus 90 ~v~C~kCqgkG~~~ 103 (113)
...|..|...|++.
T Consensus 27 ~~~C~~Cg~~GH~~ 40 (49)
T 2ec7_A 27 RQGCWKCGKTGHVM 40 (49)
T ss_dssp CCSCSSSCCSSCCG
T ss_pred CCeeCcCCCcCCcc
Confidence 35699999999876
No 41
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=38.24 E-value=11 Score=27.24 Aligned_cols=21 Identities=24% Similarity=0.854 Sum_probs=14.7
Q ss_pred eeeccC--CCCc------cceeCCCCCCC
Q 033690 90 SIGCSK--CKGR------GHFCCPGCSNK 110 (113)
Q Consensus 90 ~v~C~k--Cqgk------G~~~CP~Csk~ 110 (113)
-..||. |+-| |.+.|+.|++.
T Consensus 43 Y~aC~~~~CnKKv~~~~~g~~~CekC~~~ 71 (181)
T 1l1o_C 43 YQACPTQDCNKKVIDQQNGLYRCEKCDTE 71 (181)
T ss_dssp EEBCCSTTCCCBCEEETTTEEEETTTTEE
T ss_pred ECCCCchhcCCccccCCCCeEECCCCCCc
Confidence 346888 8754 67888888653
No 42
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=37.87 E-value=32 Score=18.01 Aligned_cols=9 Identities=11% Similarity=0.139 Sum_probs=6.1
Q ss_pred ceeCCCCCC
Q 033690 101 HFCCPGCSN 109 (113)
Q Consensus 101 ~~~CP~Csk 109 (113)
.|.|+.|+|
T Consensus 40 ~~~C~~C~k 48 (48)
T 2epr_A 40 PYSSGPSSG 48 (48)
T ss_dssp CCCSCCCCC
T ss_pred CccCCCCCC
Confidence 467777765
No 43
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=37.68 E-value=14 Score=26.04 Aligned_cols=7 Identities=43% Similarity=1.540 Sum_probs=3.4
Q ss_pred eeCCCCC
Q 033690 102 FCCPGCS 108 (113)
Q Consensus 102 ~~CP~Cs 108 (113)
+.||.|+
T Consensus 108 ~~CP~Cg 114 (139)
T 3a43_A 108 LACPKCG 114 (139)
T ss_dssp CSCSSSS
T ss_pred CcCcccc
Confidence 4455554
No 44
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=37.59 E-value=15 Score=28.28 Aligned_cols=13 Identities=54% Similarity=1.232 Sum_probs=8.6
Q ss_pred CccceeCCCCCCC
Q 033690 98 GRGHFCCPGCSNK 110 (113)
Q Consensus 98 gkG~~~CP~Csk~ 110 (113)
+|.-+-||.|+++
T Consensus 259 gR~t~~CP~CQ~~ 271 (271)
T 2xzf_A 259 GRGTHFCPVCQQK 271 (271)
T ss_dssp TEEEEECTTTSCC
T ss_pred CCceEECCCCCCC
Confidence 3666777777764
No 45
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=37.39 E-value=31 Score=19.34 Aligned_cols=10 Identities=40% Similarity=0.693 Sum_probs=6.8
Q ss_pred ceeCCCCCCC
Q 033690 101 HFCCPGCSNK 110 (113)
Q Consensus 101 ~~~CP~Csk~ 110 (113)
.|.|+.|++.
T Consensus 37 ~~~C~~C~~~ 46 (70)
T 1x5w_A 37 PFKCNYCSFD 46 (70)
T ss_dssp SEECSSSSCE
T ss_pred CEeCCCCCCc
Confidence 4777777764
No 46
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=35.67 E-value=29 Score=22.55 Aligned_cols=24 Identities=29% Similarity=0.854 Sum_probs=18.2
Q ss_pred ccccceeeccCCCCc-cc--eeCCCCCC
Q 033690 85 ESQMKSIGCSKCKGR-GH--FCCPGCSN 109 (113)
Q Consensus 85 ~~~~~~v~C~kCqgk-G~--~~CP~Csk 109 (113)
.++.+...|+.|+-+ |. |.| +|++
T Consensus 10 ~~k~~~~rC~~C~kkvgl~~f~C-rCg~ 36 (64)
T 1wfh_A 10 SPPQRPNRCTVCRKRVGLTGFMC-RCGT 36 (64)
T ss_dssp CCCSSCCCCTTTCCCCCTTCEEC-SSSC
T ss_pred CCCCcCCcChhhCCccCccCEEe-ecCC
Confidence 456667789999987 54 789 7976
No 47
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=35.48 E-value=18 Score=20.61 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=16.7
Q ss_pred CCchhhhhhhhhhHHHhhhhhc
Q 033690 3 GLTASEVAGFGVGTVLLCATIA 24 (113)
Q Consensus 3 ~~t~seiagf~vg~lll~atia 24 (113)
+|..-.|||+.||.++.-+-|+
T Consensus 3 ~L~~gaIaGIVvgdi~~t~~i~ 24 (33)
T 2l34_A 3 TVSPGVLAGIVVGDLVLTVLIA 24 (33)
T ss_dssp CCCTHHHHHHHHHHHHHHHHHH
T ss_pred ccCcceEEeEeHHHHHHHHHHH
Confidence 4677789999999887665554
No 48
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=35.24 E-value=17 Score=16.19 Aligned_cols=10 Identities=40% Similarity=0.899 Sum_probs=7.1
Q ss_pred eeCCCCCCCC
Q 033690 102 FCCPGCSNKP 111 (113)
Q Consensus 102 ~~CP~Csk~~ 111 (113)
+.|+.|++..
T Consensus 3 ~~C~~C~~~f 12 (29)
T 2m0e_A 3 HKCPHCDKKF 12 (29)
T ss_dssp CCCSSCCCCC
T ss_pred CcCCCCCccc
Confidence 5688887754
No 49
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=34.47 E-value=15 Score=16.59 Aligned_cols=9 Identities=44% Similarity=1.523 Sum_probs=6.8
Q ss_pred eeCCCCCCC
Q 033690 102 FCCPGCSNK 110 (113)
Q Consensus 102 ~~CP~Csk~ 110 (113)
+.|+.|++.
T Consensus 3 ~~C~~C~k~ 11 (29)
T 1rik_A 3 FACPECPKR 11 (29)
T ss_dssp EECSSSSCE
T ss_pred ccCCCCCch
Confidence 678888874
No 50
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=33.98 E-value=16 Score=16.45 Aligned_cols=10 Identities=30% Similarity=0.793 Sum_probs=7.2
Q ss_pred eeCCCCCCCC
Q 033690 102 FCCPGCSNKP 111 (113)
Q Consensus 102 ~~CP~Csk~~ 111 (113)
+.|+.|++..
T Consensus 3 ~~C~~C~~~f 12 (29)
T 1ard_A 3 FVCEVCTRAF 12 (29)
T ss_dssp CBCTTTCCBC
T ss_pred eECCCCCccc
Confidence 6788887754
No 51
>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens}
Probab=33.62 E-value=20 Score=21.59 Aligned_cols=22 Identities=32% Similarity=0.652 Sum_probs=18.5
Q ss_pred ccccccccCCcceEEcCCCccc
Q 033690 39 SLGMCKKCGDVGMIACSRCKGM 60 (113)
Q Consensus 39 sL~mCk~Cggl~~vaCsrCKGt 60 (113)
....|..|+......|++|+..
T Consensus 16 ~~~~C~~C~~~~~~~Cs~C~~~ 37 (64)
T 2odd_A 16 SSESCWNCGRKASETCSGCNTA 37 (64)
T ss_dssp CSSSCTTTSSCCCEEETTTSCC
T ss_pred CCCcCccccCCCcccCCCCCCh
Confidence 3568999999889999999864
No 52
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=33.53 E-value=46 Score=26.53 Aligned_cols=44 Identities=16% Similarity=0.156 Sum_probs=23.5
Q ss_pred hhhhhhhhHHHhhhhhcccchhhHHhhhhhcccccccccCCcceE
Q 033690 8 EVAGFGVGTVLLCATIAAPKLDAFFSASQRSSLGMCKKCGDVGMI 52 (113)
Q Consensus 8 eiagf~vg~lll~atiaa~kvd~fi~~sqr~sL~mCk~Cggl~~v 52 (113)
+.+-|+..+|=+..+..|..+|.=.-... -..+.|+-||+.-.+
T Consensus 151 ~~~~fi~aaLq~~~~~~a~~l~~~~~~~~-~~~~~CPvCGs~P~~ 194 (309)
T 2fiy_A 151 ALVPFLGAALQVAWSHWLLGLEEGAVVET-ESRTLCPACGSPPMA 194 (309)
T ss_dssp GGHHHHHHHHHHHHHHHHHTCCTTCSCCC-TTCSSCTTTCCCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhCCccccCcc-ccCCCCCCCCCcCce
Confidence 34556555555555555555543110011 345789999987654
No 53
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=33.03 E-value=25 Score=31.58 Aligned_cols=12 Identities=33% Similarity=0.988 Sum_probs=6.0
Q ss_pred ccccccCCcceE
Q 033690 41 GMCKKCGDVGMI 52 (113)
Q Consensus 41 ~mCk~Cggl~~v 52 (113)
+.|+.|.+.+.+
T Consensus 639 g~c~~c~g~G~~ 650 (842)
T 2vf7_A 639 GRCEHCQGEGWV 650 (842)
T ss_dssp TBCTTTTTCSEE
T ss_pred cccccccCCCcc
Confidence 345555555543
No 54
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=32.62 E-value=17 Score=16.44 Aligned_cols=10 Identities=30% Similarity=0.959 Sum_probs=7.2
Q ss_pred ceeCCCCCCC
Q 033690 101 HFCCPGCSNK 110 (113)
Q Consensus 101 ~~~CP~Csk~ 110 (113)
.+.|+.|++.
T Consensus 3 ~~~C~~C~k~ 12 (27)
T 2kvh_A 3 PFSCSLCPQR 12 (27)
T ss_dssp CEECSSSSCE
T ss_pred CccCCCcChh
Confidence 3678888775
No 55
>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1
Probab=32.61 E-value=17 Score=21.85 Aligned_cols=23 Identities=30% Similarity=0.631 Sum_probs=18.7
Q ss_pred cccccccccCCcceEEcCCCccc
Q 033690 38 SSLGMCKKCGDVGMIACSRCKGM 60 (113)
Q Consensus 38 ~sL~mCk~Cggl~~vaCsrCKGt 60 (113)
.....|..|+......|++|+-.
T Consensus 13 ~~~~~C~~C~~~~~~~Cs~C~~v 35 (60)
T 2dj8_A 13 DSSESCWNCGRKASETCSGCNTA 35 (60)
T ss_dssp CCSCCCSSSCSCCCEECTTTSCC
T ss_pred CCCcccccCCCCCcccCCCCCCE
Confidence 34568999998888999999864
No 56
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=31.38 E-value=24 Score=22.55 Aligned_cols=23 Identities=30% Similarity=0.667 Sum_probs=13.3
Q ss_pred ceeeccCCCCcc-ceeCCCCCCCC
Q 033690 89 KSIGCSKCKGRG-HFCCPGCSNKP 111 (113)
Q Consensus 89 ~~v~C~kCqgkG-~~~CP~Csk~~ 111 (113)
+...|++|.--- .-.||.|+..-
T Consensus 5 ~mr~C~~CgvYTLk~~CP~CG~~T 28 (60)
T 2apo_B 5 RMKKCPKCGLYTLKEICPKCGEKT 28 (60)
T ss_dssp CCEECTTTCCEESSSBCSSSCSBC
T ss_pred hceeCCCCCCEeccccCcCCCCcC
Confidence 456777774322 23488887653
No 57
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=30.88 E-value=24 Score=23.75 Aligned_cols=24 Identities=21% Similarity=0.660 Sum_probs=16.5
Q ss_pred ccceeeccCCCCc-----cce-eCCCCCCC
Q 033690 87 QMKSIGCSKCKGR-----GHF-CCPGCSNK 110 (113)
Q Consensus 87 ~~~~v~C~kCqgk-----G~~-~CP~Csk~ 110 (113)
..-.+.|.+|.-. -.+ .||.|+..
T Consensus 70 ~p~~~~C~~CG~~~e~~~~~~~~CP~Cgs~ 99 (119)
T 2kdx_A 70 EKVELECKDCSHVFKPNALDYGVCEKCHSK 99 (119)
T ss_dssp ECCEEECSSSSCEECSCCSTTCCCSSSSSC
T ss_pred ccceEEcCCCCCEEeCCCCCCCcCccccCC
Confidence 3447889999643 245 89999754
No 58
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=30.76 E-value=34 Score=25.97 Aligned_cols=11 Identities=45% Similarity=0.945 Sum_probs=8.8
Q ss_pred eeeccCCCCcc
Q 033690 90 SIGCSKCKGRG 100 (113)
Q Consensus 90 ~v~C~kCqgkG 100 (113)
+..|+.|+++|
T Consensus 156 P~~Cp~C~~~~ 166 (279)
T 1ltl_A 156 PSLCSECGGRS 166 (279)
T ss_dssp CSCCTTTCCCC
T ss_pred CCcCCCCCCCC
Confidence 45799999887
No 59
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=30.67 E-value=15 Score=24.48 Aligned_cols=24 Identities=25% Similarity=0.642 Sum_probs=15.7
Q ss_pred ccceeeccCCCC-------ccceeCCCCCCC
Q 033690 87 QMKSIGCSKCKG-------RGHFCCPGCSNK 110 (113)
Q Consensus 87 ~~~~v~C~kCqg-------kG~~~CP~Csk~ 110 (113)
.....+||.|-+ .|...|+.|++.
T Consensus 24 q~~~y~Cp~CG~~~v~r~atGiW~C~~Cg~~ 54 (83)
T 1vq8_Z 24 MNEDHACPNCGEDRVDRQGTGIWQCSYCDYK 54 (83)
T ss_dssp HHSCEECSSSCCEEEEEEETTEEEETTTCCE
T ss_pred ccccCcCCCCCCcceeccCCCeEECCCCCCE
Confidence 344567888744 355678888764
No 60
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=30.61 E-value=19 Score=16.39 Aligned_cols=10 Identities=20% Similarity=0.653 Sum_probs=7.1
Q ss_pred eeCCCCCCCC
Q 033690 102 FCCPGCSNKP 111 (113)
Q Consensus 102 ~~CP~Csk~~ 111 (113)
+.|+.|++..
T Consensus 3 ~~C~~C~k~f 12 (30)
T 1paa_A 3 YACGLCNRAF 12 (30)
T ss_dssp SBCTTTCCBC
T ss_pred cCCcccCccc
Confidence 6788887754
No 61
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=30.35 E-value=19 Score=16.03 Aligned_cols=10 Identities=20% Similarity=0.537 Sum_probs=7.2
Q ss_pred eeCCCCCCCC
Q 033690 102 FCCPGCSNKP 111 (113)
Q Consensus 102 ~~CP~Csk~~ 111 (113)
+.|+.|++..
T Consensus 2 ~~C~~C~k~f 11 (27)
T 1znf_A 2 YKCGLCERSF 11 (27)
T ss_dssp CBCSSSCCBC
T ss_pred ccCCCCCCcC
Confidence 5688888754
No 62
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=30.13 E-value=20 Score=16.20 Aligned_cols=9 Identities=22% Similarity=1.080 Sum_probs=6.7
Q ss_pred eeCCCCCCC
Q 033690 102 FCCPGCSNK 110 (113)
Q Consensus 102 ~~CP~Csk~ 110 (113)
+.|+.|++.
T Consensus 4 ~~C~~C~k~ 12 (28)
T 2kvf_A 4 YSCSVCGKR 12 (28)
T ss_dssp EECSSSCCE
T ss_pred ccCCCCCcc
Confidence 678888775
No 63
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=29.75 E-value=17 Score=23.26 Aligned_cols=23 Identities=30% Similarity=0.704 Sum_probs=12.9
Q ss_pred cceeeccCCCCcc-ceeCCCCCCC
Q 033690 88 MKSIGCSKCKGRG-HFCCPGCSNK 110 (113)
Q Consensus 88 ~~~v~C~kCqgkG-~~~CP~Csk~ 110 (113)
++..+|++|.--- .-.||.|+..
T Consensus 3 s~mr~C~~Cg~YTLk~~CP~CG~~ 26 (60)
T 2aus_D 3 FRIRKCPKCGRYTLKETCPVCGEK 26 (60)
T ss_dssp -CCEECTTTCCEESSSBCTTTCSB
T ss_pred ccceECCCCCCEEccccCcCCCCc
Confidence 3456788883221 1238888765
No 64
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=29.64 E-value=18 Score=32.81 Aligned_cols=23 Identities=39% Similarity=0.959 Sum_probs=17.2
Q ss_pred ccccccC-------------CcceEEcCCCccceee
Q 033690 41 GMCKKCG-------------DVGMIACSRCKGMGLI 63 (113)
Q Consensus 41 ~mCk~Cg-------------gl~~vaCsrCKGtG~I 63 (113)
-.|+.|| +.-.-+|+.|.|.|++
T Consensus 250 ~~c~~~~~~~~~~~~~~fsfn~p~g~C~~C~G~G~~ 285 (916)
T 3pih_A 250 LMCPVCGIGFPEITPKLFSFNSPYGACPNCHGLGFT 285 (916)
T ss_dssp CBCTTTCCCCCCCSGGGGCTTSTTTBCTTTTTSSEE
T ss_pred ccCcccCCccCCCCHhhcCCCCCCCcCCeeecccce
Confidence 4688887 3345689999999876
No 65
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=29.52 E-value=23 Score=15.85 Aligned_cols=10 Identities=20% Similarity=0.723 Sum_probs=7.1
Q ss_pred eeCCCCCCCC
Q 033690 102 FCCPGCSNKP 111 (113)
Q Consensus 102 ~~CP~Csk~~ 111 (113)
+.|+.|++..
T Consensus 3 ~~C~~C~k~f 12 (30)
T 1klr_A 3 YQCQYCEFRS 12 (30)
T ss_dssp CCCSSSSCCC
T ss_pred ccCCCCCCcc
Confidence 5688887754
No 66
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=29.21 E-value=28 Score=26.84 Aligned_cols=13 Identities=46% Similarity=1.229 Sum_probs=7.9
Q ss_pred CccceeCCCCCCC
Q 033690 98 GRGHFCCPGCSNK 110 (113)
Q Consensus 98 gkG~~~CP~Csk~ 110 (113)
+|.-+-||.|+++
T Consensus 252 gR~t~~CP~CQ~~ 264 (266)
T 1ee8_A 252 GRGTHFCPTCQGE 264 (266)
T ss_dssp SCEEEECTTTTTC
T ss_pred CCceEECCCCCCC
Confidence 3566667777654
No 67
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=28.80 E-value=23 Score=17.14 Aligned_cols=11 Identities=36% Similarity=0.948 Sum_probs=7.3
Q ss_pred ceeCCCCCCCC
Q 033690 101 HFCCPGCSNKP 111 (113)
Q Consensus 101 ~~~CP~Csk~~ 111 (113)
.|.|+.|++..
T Consensus 11 ~~~C~~C~k~f 21 (37)
T 1p7a_A 11 PFQCPDCDRSF 21 (37)
T ss_dssp SBCCTTTCCCB
T ss_pred CccCCCCCccc
Confidence 46777777653
No 68
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=34.83 E-value=12 Score=16.86 Aligned_cols=10 Identities=20% Similarity=0.889 Sum_probs=7.1
Q ss_pred eeCCCCCCCC
Q 033690 102 FCCPGCSNKP 111 (113)
Q Consensus 102 ~~CP~Csk~~ 111 (113)
+.|+.|++..
T Consensus 3 ~~C~~C~k~f 12 (26)
T 2lvu_A 3 YVCERCGKRF 12 (26)
Confidence 5788887753
No 69
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=27.86 E-value=75 Score=20.72 Aligned_cols=23 Identities=30% Similarity=0.598 Sum_probs=16.1
Q ss_pred cccccccccCCcce----EEcCCCccc
Q 033690 38 SSLGMCKKCGDVGM----IACSRCKGM 60 (113)
Q Consensus 38 ~sL~mCk~Cggl~~----vaCsrCKGt 60 (113)
..-.+|..|++.+. +.|..|--.
T Consensus 5 ~~~~~C~~C~~~g~~~~ll~C~~C~~~ 31 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFFCTTCGQH 31 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEECSSSCCE
T ss_pred CCCCCCcCCCCCCCCcCCeECCCCCCC
Confidence 34567888877664 788888643
No 70
>3w0f_A Endonuclease 8-like 3; helix two turns helix, zinc finger, DNA binding, hydrolase; 2.00A {Mus musculus}
Probab=27.57 E-value=28 Score=27.77 Aligned_cols=19 Identities=32% Similarity=1.093 Sum_probs=15.5
Q ss_pred eccCCC-----------CccceeCCCCCCC
Q 033690 92 GCSKCK-----------GRGHFCCPGCSNK 110 (113)
Q Consensus 92 ~C~kCq-----------gkG~~~CP~Csk~ 110 (113)
+|+.|. +|.-|-||+|.|.
T Consensus 253 pC~~CGt~I~~~~~g~~gRsTyfCp~~~~~ 282 (287)
T 3w0f_A 253 NCDQCHSKITVCRFGENSRMTYFCPHCQKH 282 (287)
T ss_dssp BCTTTCCBCEEECSSTTCCCEEECTTTSCC
T ss_pred CCCCCCCEEEEEEecCCCCCEEECCCcccc
Confidence 788885 6888899999875
No 71
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=27.20 E-value=25 Score=15.68 Aligned_cols=10 Identities=20% Similarity=0.690 Sum_probs=7.1
Q ss_pred ceeCCCCCCC
Q 033690 101 HFCCPGCSNK 110 (113)
Q Consensus 101 ~~~CP~Csk~ 110 (113)
.+.|+.|++.
T Consensus 3 ~~~C~~C~~~ 12 (30)
T 2m0d_A 3 PYQCDYCGRS 12 (30)
T ss_dssp CEECTTTCCE
T ss_pred CccCCCCCcc
Confidence 3678888764
No 72
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=26.43 E-value=41 Score=23.80 Aligned_cols=19 Identities=26% Similarity=0.653 Sum_probs=14.9
Q ss_pred eeeccCCCCcccee--CCCCC
Q 033690 90 SIGCSKCKGRGHFC--CPGCS 108 (113)
Q Consensus 90 ~v~C~kCqgkG~~~--CP~Cs 108 (113)
...|..|...|++. ||+=.
T Consensus 119 ~~~C~~Cg~~GH~~r~Cp~~~ 139 (148)
T 3ts2_A 119 PKKCHFCQSINHMVASCPLKA 139 (148)
T ss_dssp CCCCTTTCCSSCCGGGCTTTT
T ss_pred CCcccccCCcCCEeccCcCCC
Confidence 45799999999994 77643
No 73
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=25.95 E-value=29 Score=20.87 Aligned_cols=13 Identities=23% Similarity=0.756 Sum_probs=7.8
Q ss_pred eEEcCCCccceee
Q 033690 51 MIACSRCKGMGLI 63 (113)
Q Consensus 51 ~vaCsrCKGtG~I 63 (113)
.+.|++|+...-+
T Consensus 9 ~~~Cp~Cg~~~a~ 21 (50)
T 1tfi_A 9 LFTCGKCKKKNCT 21 (50)
T ss_dssp CSCCSSSCSSCEE
T ss_pred ccCCCCCCCCEEE
Confidence 4567777754443
No 74
>1pfi_A Major coat protein of PF1 virus; complex(viral coat protein/DNA), helical virus; HET: DC; 3.00A {Pseudomonas phage PF1} SCOP: h.1.4.1 PDB: 1ifn_A 1ifm_A* 1pjf_A 1ql1_A 1ql2_A 1zn5_A 2ifm_A 2ifn_A 2klv_A 2ksj_A 2xkm_A 3ifm_A 4ifm_A
Probab=24.97 E-value=31 Score=21.38 Aligned_cols=15 Identities=27% Similarity=0.640 Sum_probs=12.6
Q ss_pred hhhhhhhhhHHHhhh
Q 033690 7 SEVAGFGVGTVLLCA 21 (113)
Q Consensus 7 seiagf~vg~lll~a 21 (113)
+.|+|..||+|.+-|
T Consensus 20 ~si~~~IVGaLvil~ 34 (46)
T 1pfi_A 20 KAIGGYIVGALVILA 34 (46)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 579999999997765
No 75
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=24.93 E-value=41 Score=31.04 Aligned_cols=11 Identities=36% Similarity=0.939 Sum_probs=5.3
Q ss_pred cccccCCcceE
Q 033690 42 MCKKCGDVGMI 52 (113)
Q Consensus 42 mCk~Cggl~~v 52 (113)
.|+.|.+.|.+
T Consensus 755 rC~~C~g~G~i 765 (972)
T 2r6f_A 755 RCEACHGDGII 765 (972)
T ss_dssp BCTTTTTCSEE
T ss_pred cccccccccce
Confidence 45555554443
No 76
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=24.77 E-value=18 Score=16.59 Aligned_cols=10 Identities=30% Similarity=0.879 Sum_probs=7.1
Q ss_pred ceeCCCCCCC
Q 033690 101 HFCCPGCSNK 110 (113)
Q Consensus 101 ~~~CP~Csk~ 110 (113)
.+.|+.|++.
T Consensus 3 ~~~C~~C~k~ 12 (27)
T 2kvg_A 3 PYRCPLCRAG 12 (27)
T ss_dssp TEEETTTTEE
T ss_pred CcCCCCCCcc
Confidence 3678888764
No 77
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.66 E-value=28 Score=16.63 Aligned_cols=11 Identities=27% Similarity=0.531 Sum_probs=7.0
Q ss_pred ceeCCCCCCCC
Q 033690 101 HFCCPGCSNKP 111 (113)
Q Consensus 101 ~~~CP~Csk~~ 111 (113)
.+.|+.|++..
T Consensus 9 ~~~C~~C~k~f 19 (36)
T 2elr_A 9 THLCDMCGKKF 19 (36)
T ss_dssp SCBCTTTCCBC
T ss_pred CeecCcCCCCc
Confidence 46677777653
No 78
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=24.46 E-value=28 Score=16.44 Aligned_cols=10 Identities=30% Similarity=0.816 Sum_probs=7.1
Q ss_pred ceeCCCCCCC
Q 033690 101 HFCCPGCSNK 110 (113)
Q Consensus 101 ~~~CP~Csk~ 110 (113)
.+.|+.|++.
T Consensus 7 ~~~C~~C~k~ 16 (35)
T 2elx_A 7 GYVCALCLKK 16 (35)
T ss_dssp SEECSSSCCE
T ss_pred CeECCCCcch
Confidence 4678888764
No 79
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.33 E-value=29 Score=16.71 Aligned_cols=10 Identities=30% Similarity=0.760 Sum_probs=6.9
Q ss_pred ceeCCCCCCC
Q 033690 101 HFCCPGCSNK 110 (113)
Q Consensus 101 ~~~CP~Csk~ 110 (113)
.+.|+.|++.
T Consensus 9 ~~~C~~C~k~ 18 (36)
T 2els_A 9 IFTCEYCNKV 18 (36)
T ss_dssp CEECTTTCCE
T ss_pred CEECCCCCce
Confidence 4677778764
No 80
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=24.21 E-value=26 Score=32.38 Aligned_cols=26 Identities=27% Similarity=0.519 Sum_probs=0.0
Q ss_pred cccccccccC--------------CcceEEcCCCccceee
Q 033690 38 SSLGMCKKCG--------------DVGMIACSRCKGMGLI 63 (113)
Q Consensus 38 ~sL~mCk~Cg--------------gl~~vaCsrCKGtG~I 63 (113)
|.--.|+.|+ +--.-+|+.|.|.|.+
T Consensus 273 s~~~~c~~~g~~~~~~~~p~~FSfN~p~GaCp~C~G~G~~ 312 (993)
T 2ygr_A 273 SEKLACPNGHALAVDDLEPRSFSFNSPYGACPDCSGLGIR 312 (993)
T ss_dssp ESSCBCTTCCCCSCSCCCGGGGCTTSTTTBCTTTTTSCEE
T ss_pred cccccCCCCCCcccCCCChhhcCcCCCCCCCCCCcCccce
No 81
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=24.15 E-value=21 Score=22.50 Aligned_cols=19 Identities=32% Similarity=0.765 Sum_probs=15.0
Q ss_pred eeccCCCCcc----ceeCCCCCC
Q 033690 91 IGCSKCKGRG----HFCCPGCSN 109 (113)
Q Consensus 91 v~C~kCqgkG----~~~CP~Csk 109 (113)
..|.-||..- .+.||+|.+
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~ 38 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQN 38 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTC
T ss_pred CcccccCcccCCCccEECCccCc
Confidence 4599998765 688999976
No 82
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=23.66 E-value=27 Score=25.80 Aligned_cols=20 Identities=20% Similarity=0.506 Sum_probs=13.9
Q ss_pred eeccCCCCc------cceeCCCCCCC
Q 033690 91 IGCSKCKGR------GHFCCPGCSNK 110 (113)
Q Consensus 91 v~C~kCqgk------G~~~CP~Csk~ 110 (113)
..||+|+-| |.+.|++|++.
T Consensus 43 ~ACp~CnKKV~~~~~g~~~CekC~~~ 68 (172)
T 3u50_C 43 YRCTCQGKSVLKYHGDSFFCESCQQF 68 (172)
T ss_dssp EECTTSCCCEEEETTTEEEETTTTEE
T ss_pred hhchhhCCEeeeCCCCeEECCCCCCC
Confidence 458888654 56888888764
No 83
>1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A*
Probab=23.43 E-value=20 Score=27.01 Aligned_cols=25 Identities=16% Similarity=0.554 Sum_probs=11.9
Q ss_pred ccccCCCCCcc-----ccccceeeccCCCC
Q 033690 74 MDELYPPLDGA-----ESQMKSIGCSKCKG 98 (113)
Q Consensus 74 ~ddiyes~g~~-----~~~~~~v~C~kCqg 98 (113)
+|+|+|..|.+ -.....+.|.+|..
T Consensus 100 iDgLh~~AG~~~v~elHG~~~~~~C~~C~~ 129 (249)
T 1m2k_A 100 VDDLHERAGSRNVIHLHGSLRVVRCTSCNN 129 (249)
T ss_dssp CSCHHHHTTCCSEEETTEEEEEEEESSSSC
T ss_pred ccchhhhcCCCcEEEecCCcceeEeCCCCC
Confidence 35555555532 12233445777743
No 84
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=23.36 E-value=26 Score=16.81 Aligned_cols=9 Identities=44% Similarity=1.571 Sum_probs=6.7
Q ss_pred eeCCCCCCC
Q 033690 102 FCCPGCSNK 110 (113)
Q Consensus 102 ~~CP~Csk~ 110 (113)
+.|+.|+|.
T Consensus 3 ~~C~~C~k~ 11 (32)
T 2kfq_A 3 FACPACPKR 11 (32)
T ss_dssp SSSSSSCTT
T ss_pred CCCCCCCcc
Confidence 678888874
No 85
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.08 E-value=31 Score=16.73 Aligned_cols=10 Identities=30% Similarity=0.664 Sum_probs=6.7
Q ss_pred ceeCCCCCCC
Q 033690 101 HFCCPGCSNK 110 (113)
Q Consensus 101 ~~~CP~Csk~ 110 (113)
.|.|+.|++.
T Consensus 9 ~~~C~~C~k~ 18 (37)
T 2elp_A 9 AMKCPYCDFY 18 (37)
T ss_dssp CEECSSSSCE
T ss_pred CeECCCCChh
Confidence 4677777764
No 86
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=23.04 E-value=33 Score=16.60 Aligned_cols=10 Identities=40% Similarity=1.245 Sum_probs=7.4
Q ss_pred eeCCCCCCCC
Q 033690 102 FCCPGCSNKP 111 (113)
Q Consensus 102 ~~CP~Csk~~ 111 (113)
+.|+.|+|..
T Consensus 3 ~~C~~C~k~F 12 (33)
T 1rim_A 3 FACPECPKRF 12 (33)
T ss_dssp CCCSSSCCCC
T ss_pred ccCCCCCchh
Confidence 6788888764
No 87
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.82 E-value=32 Score=16.58 Aligned_cols=10 Identities=30% Similarity=0.684 Sum_probs=6.6
Q ss_pred ceeCCCCCCC
Q 033690 101 HFCCPGCSNK 110 (113)
Q Consensus 101 ~~~CP~Csk~ 110 (113)
.|.|+.|++.
T Consensus 9 ~~~C~~C~k~ 18 (36)
T 2elq_A 9 PFKCSLCEYA 18 (36)
T ss_dssp SEECSSSSCE
T ss_pred CccCCCCCch
Confidence 4677777664
No 88
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=22.77 E-value=38 Score=19.75 Aligned_cols=14 Identities=43% Similarity=0.828 Sum_probs=10.7
Q ss_pred eeeccCCCCcccee
Q 033690 90 SIGCSKCKGRGHFC 103 (113)
Q Consensus 90 ~v~C~kCqgkG~~~ 103 (113)
...|..|...|++.
T Consensus 33 ~~~C~~Cg~~GH~~ 46 (55)
T 1a1t_A 33 KKGCWKCGKEGHQM 46 (55)
T ss_dssp CCBCTTTCCBSSCG
T ss_pred CCEeCCCCCcCCcc
Confidence 45789998888764
No 89
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.44 E-value=38 Score=16.68 Aligned_cols=10 Identities=20% Similarity=0.786 Sum_probs=6.3
Q ss_pred ceeCCCCCCC
Q 033690 101 HFCCPGCSNK 110 (113)
Q Consensus 101 ~~~CP~Csk~ 110 (113)
.|.|+.|++.
T Consensus 9 ~~~C~~C~k~ 18 (37)
T 2elm_A 9 LYYCSQCHYS 18 (37)
T ss_dssp EEECSSSSCE
T ss_pred CeECCCCCcc
Confidence 3667777664
No 90
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=22.07 E-value=38 Score=26.15 Aligned_cols=18 Identities=44% Similarity=1.298 Sum_probs=12.2
Q ss_pred eccCCC---------CccceeCCCCCC
Q 033690 92 GCSKCK---------GRGHFCCPGCSN 109 (113)
Q Consensus 92 ~C~kCq---------gkG~~~CP~Csk 109 (113)
||+.|. +|.-+-||.|++
T Consensus 247 pC~~CG~~I~~~~~~gR~t~~CP~CQ~ 273 (273)
T 3u6p_A 247 PCKRCGTPIEKTVVAGRGTHYCPRCQR 273 (273)
T ss_dssp BCTTTCCBCEEEEETTEEEEECTTTCC
T ss_pred CCCCCCCeEEEEEECCCCeEECCCCCC
Confidence 566664 466777888864
No 91
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=22.00 E-value=30 Score=31.32 Aligned_cols=18 Identities=33% Similarity=0.735 Sum_probs=15.0
Q ss_pred hhhcccccccccCCcceE
Q 033690 35 SQRSSLGMCKKCGDVGMI 52 (113)
Q Consensus 35 sqr~sL~mCk~Cggl~~v 52 (113)
|=++..|||++|.|+|.+
T Consensus 268 sfn~p~g~C~~C~G~G~~ 285 (916)
T 3pih_A 268 SFNSPYGACPNCHGLGFT 285 (916)
T ss_dssp CTTSTTTBCTTTTTSSEE
T ss_pred CCCCCCCcCCeeecccce
Confidence 446678999999999976
No 92
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A*
Probab=21.66 E-value=23 Score=26.48 Aligned_cols=25 Identities=16% Similarity=0.425 Sum_probs=12.4
Q ss_pred ccccCCCCCcc-----ccccceeeccCCCC
Q 033690 74 MDELYPPLDGA-----ESQMKSIGCSKCKG 98 (113)
Q Consensus 74 ~ddiyes~g~~-----~~~~~~v~C~kCqg 98 (113)
+|+|+|..|.+ -.....+.|.+|..
T Consensus 100 vD~Lh~~AG~~~v~elHG~~~~~~C~~C~~ 129 (246)
T 1yc5_A 100 IDRLHQRAGSKKVIELHGNVEEYYCVRCEK 129 (246)
T ss_dssp CSCHHHHTTCSCEEETTEEEEEEEETTTCC
T ss_pred ccchHhHcCCCcEEEecCccceeEcCCCCC
Confidence 35555555532 12234455777753
No 93
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=21.52 E-value=41 Score=23.63 Aligned_cols=18 Identities=39% Similarity=0.767 Sum_probs=11.7
Q ss_pred Hhhhhhcc---c----ccccccCCc
Q 033690 32 FSASQRSS---L----GMCKKCGDV 49 (113)
Q Consensus 32 i~~sqr~s---L----~mCk~Cggl 49 (113)
|+-|.+|. | -.|++||..
T Consensus 52 Iaksl~r~g~~L~v~p~~C~~CG~~ 76 (105)
T 2gmg_A 52 ISKIAKREGMVLLIKPAQCRKCGFV 76 (105)
T ss_dssp HHHHHTTTTEEEEECCCBBTTTCCB
T ss_pred HHHHHhcCCcEEEEECcChhhCcCe
Confidence 67777763 3 458888754
No 94
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=21.12 E-value=53 Score=20.92 Aligned_cols=20 Identities=25% Similarity=0.808 Sum_probs=16.2
Q ss_pred eeeccCCC----CccceeCCCCCC
Q 033690 90 SIGCSKCK----GRGHFCCPGCSN 109 (113)
Q Consensus 90 ~v~C~kCq----gkG~~~CP~Csk 109 (113)
...|.-|. -.....||+|+-
T Consensus 11 ~~~C~vC~~~~~~~akY~CPrC~~ 34 (59)
T 1x4s_A 11 AGPCGFCPAGEVQPARYTCPRCNA 34 (59)
T ss_dssp CEEECSSCTTCCEEECEECTTTCC
T ss_pred CCcCcCCCCCcCCCccccCcCCCC
Confidence 45799997 479999999974
No 95
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=20.99 E-value=41 Score=25.81 Aligned_cols=12 Identities=33% Similarity=0.902 Sum_probs=7.6
Q ss_pred CccceeCCCCCC
Q 033690 98 GRGHFCCPGCSN 109 (113)
Q Consensus 98 gkG~~~CP~Csk 109 (113)
+|.-+-||.|++
T Consensus 257 gR~t~~CP~CQ~ 268 (268)
T 1k82_A 257 QRATFYCRQCQK 268 (268)
T ss_dssp TEEEEECTTTCC
T ss_pred CCceEECCCCCC
Confidence 356667777763
No 96
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=20.44 E-value=40 Score=21.74 Aligned_cols=19 Identities=21% Similarity=0.782 Sum_probs=13.1
Q ss_pred eeccCCCCc------cceeCCCCCC
Q 033690 91 IGCSKCKGR------GHFCCPGCSN 109 (113)
Q Consensus 91 v~C~kCqgk------G~~~CP~Csk 109 (113)
..|++|-.. ..+.||+|+.
T Consensus 29 Y~C~~CG~~~e~~~~d~irCp~CG~ 53 (70)
T 1twf_L 29 YICAECSSKLSLSRTDAVRCKDCGH 53 (70)
T ss_dssp EECSSSCCEECCCTTSTTCCSSSCC
T ss_pred EECCCCCCcceeCCCCCccCCCCCc
Confidence 458888665 3467888875
No 97
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.33 E-value=45 Score=16.50 Aligned_cols=11 Identities=18% Similarity=0.609 Sum_probs=7.3
Q ss_pred ceeCCCCCCCC
Q 033690 101 HFCCPGCSNKP 111 (113)
Q Consensus 101 ~~~CP~Csk~~ 111 (113)
.|.|+.|++..
T Consensus 11 ~~~C~~C~k~f 21 (42)
T 2ytb_A 11 PYRCDQCGKAF 21 (42)
T ss_dssp SBCCTTTTCCB
T ss_pred CeeCCCccchh
Confidence 46777777653
No 98
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=20.20 E-value=41 Score=26.26 Aligned_cols=19 Identities=32% Similarity=0.912 Sum_probs=15.5
Q ss_pred eeeccCCCC----------ccceeCCCCC
Q 033690 90 SIGCSKCKG----------RGHFCCPGCS 108 (113)
Q Consensus 90 ~v~C~kCqg----------kG~~~CP~Cs 108 (113)
...||.|.+ +|-+-|.+|+
T Consensus 21 ~~~CPECGs~~t~IV~D~erGE~VCsdCG 49 (197)
T 3k1f_M 21 VLTCPECKVYPPKIVERFSEGDVVCALCG 49 (197)
T ss_dssp CCCCTTTCCSSCCEEEEGGGTEEEETTTC
T ss_pred CeECcCCCCcCCeEEEeCCCCEEEEcCCC
Confidence 557999987 7888899986
No 99
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=25.46 E-value=22 Score=16.06 Aligned_cols=10 Identities=20% Similarity=0.743 Sum_probs=6.9
Q ss_pred eeCCCCCCCC
Q 033690 102 FCCPGCSNKP 111 (113)
Q Consensus 102 ~~CP~Csk~~ 111 (113)
+.|+.|++..
T Consensus 4 ~~C~~C~k~f 13 (30)
T 2lvr_A 4 YVCIHCQRQF 13 (30)
Confidence 6678887653
No 100
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=25.45 E-value=22 Score=16.16 Aligned_cols=10 Identities=20% Similarity=0.384 Sum_probs=7.2
Q ss_pred eeCCCCCCCC
Q 033690 102 FCCPGCSNKP 111 (113)
Q Consensus 102 ~~CP~Csk~~ 111 (113)
+.|+.|++..
T Consensus 3 ~~C~~C~k~f 12 (29)
T 2lvt_A 3 CQCVMCGKAF 12 (29)
Confidence 6788888753
Done!