BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033691
(113 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2F3N|A Chain A, Crystal Structure Of The Native Shank Sam Domain.
pdb|2F3N|B Chain B, Crystal Structure Of The Native Shank Sam Domain.
pdb|2F3N|C Chain C, Crystal Structure Of The Native Shank Sam Domain.
pdb|2F44|A Chain A, Crystal Structure Of The Zinc-Bound Shank Sam Domain
pdb|2F44|B Chain B, Crystal Structure Of The Zinc-Bound Shank Sam Domain
pdb|2F44|C Chain C, Crystal Structure Of The Zinc-Bound Shank Sam Domain
Length = 76
Score = 33.5 bits (75), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 7 DVGLWLEEINLGGYRQIFKENGVNGEYLEGMS 38
DVG WLE I+LG +R F+++ + G +L ++
Sbjct: 9 DVGDWLESIHLGEHRDRFEDHEIEGAHLPALT 40
>pdb|1B4F|A Chain A, Oligomeric Structure Of The Human Ephb2 Receptor Sam
Domain
pdb|1B4F|B Chain B, Oligomeric Structure Of The Human Ephb2 Receptor Sam
Domain
pdb|1B4F|C Chain C, Oligomeric Structure Of The Human Ephb2 Receptor Sam
Domain
pdb|1B4F|D Chain D, Oligomeric Structure Of The Human Ephb2 Receptor Sam
Domain
pdb|1B4F|E Chain E, Oligomeric Structure Of The Human Ephb2 Receptor Sam
Domain
pdb|1B4F|F Chain F, Oligomeric Structure Of The Human Ephb2 Receptor Sam
Domain
pdb|1B4F|G Chain G, Oligomeric Structure Of The Human Ephb2 Receptor Sam
Domain
pdb|1B4F|H Chain H, Oligomeric Structure Of The Human Ephb2 Receptor Sam
Domain
pdb|1F0M|A Chain A, Monomeric Structure Of The Human Ephb2 Sam (Sterile
Alpha Motif) Domain
Length = 82
Score = 28.9 bits (63), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 2 YLSIKDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILR 47
Y S V WLE I +G Y++ F G + +S E ILR
Sbjct: 8 YTSFNTVDEWLEAIKMGQYKESFANAGFTS--FDVVSQMMMEDILR 51
>pdb|3C9F|A Chain A, Crystal Structure Of 5'-Nucleotidase From Candida
Albicans Sc5314
pdb|3C9F|B Chain B, Crystal Structure Of 5'-Nucleotidase From Candida
Albicans Sc5314
Length = 557
Score = 27.7 bits (60), Expect = 1.5, Method: Composition-based stats.
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 53 HMKWGDFITLCKELRRI 69
H WGDFI+ +RRI
Sbjct: 38 HANWGDFISFTTHMRRI 54
>pdb|1SGG|A Chain A, The Solution Structure Of Sam Domain From The Receptor
Tyrosine Kinase Ephb2, Nmr, 10 Structures
Length = 75
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 2 YLSIKDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILR 47
Y S V WL+ I + Y++ F G + +S T E ILR
Sbjct: 7 YTSFNTVDEWLDAIKMSQYKESFASAGFTT--FDIVSQMTVEDILR 50
>pdb|3BQ3|A Chain A, Crystal Structure Of S. Cerevisiae Dcn1
Length = 270
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 41/92 (44%), Gaps = 8/92 (8%)
Query: 6 KDVGLWLEEINLGGYRQIF-KENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCK 64
K++G + +E++ + ++ KE E+ ++F + +++FI D TLC
Sbjct: 54 KEIGTFTDEVSTVAHPPVYPKELTQVFEHYINNNLFDIDSLVKFIEELGYNLEDLATLC- 112
Query: 65 ELRRIKVACLKGEQKVRRPWWAPSCLSVVFVK 96
+A L G +K+ P LS F +
Sbjct: 113 ------LAHLLGYKKLEEPLKREDFLSTWFXQ 138
>pdb|2QKQ|A Chain A, Structure Of The Sam Domain Of Human Ephrin Type-b
Receptor 4
pdb|2QKQ|B Chain B, Structure Of The Sam Domain Of Human Ephrin Type-b
Receptor 4
Length = 83
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 2 YLSIKDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILR 47
Y + VG WL I +G Y + F G E +S + E +LR
Sbjct: 12 YSAFGSVGEWLRAIKMGRYEESFAAAGFGS--FELVSQISAEDLLR 55
>pdb|2KIV|A Chain A, Aida-1 Sam Domain Tandem
Length = 148
Score = 25.8 bits (55), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 20/45 (44%)
Query: 4 SIKDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRF 48
S++ VG WLE I L Y NG + G ++ + +L
Sbjct: 13 SVQTVGQWLESIGLPQYENHLMANGFDNVQAMGSNVMEDQDLLEI 57
>pdb|3TAD|C Chain C, Crystal Structure Of The Liprin-AlphaLIPRIN-Beta Complex
pdb|3TAD|D Chain D, Crystal Structure Of The Liprin-AlphaLIPRIN-Beta Complex
Length = 265
Score = 25.4 bits (54), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 11 WLEEINLGGYRQIFKENGVNGEYLEGMSM 39
WL++I L Y+ F E V+G L M++
Sbjct: 98 WLDDIGLPQYKTQFDEGRVDGRMLHYMTV 126
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.140 0.450
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,143,694
Number of Sequences: 62578
Number of extensions: 110303
Number of successful extensions: 275
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 265
Number of HSP's gapped (non-prelim): 14
length of query: 113
length of database: 14,973,337
effective HSP length: 77
effective length of query: 36
effective length of database: 10,154,831
effective search space: 365573916
effective search space used: 365573916
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)