Query 033691
Match_columns 113
No_of_seqs 28 out of 30
Neff 2.3
Searched_HMMs 46136
Date Fri Mar 29 05:11:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033691.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033691hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00536 SAM_1: SAM domain (St 99.6 1.5E-15 3.2E-20 93.8 6.3 63 2-70 2-64 (64)
2 PF07647 SAM_2: SAM domain (St 99.6 7.6E-15 1.7E-19 90.8 5.6 63 2-70 3-66 (66)
3 cd00166 SAM Sterile alpha moti 99.5 1.1E-14 2.4E-19 86.9 5.1 63 2-70 1-63 (63)
4 smart00454 SAM Sterile alpha m 99.5 3.1E-14 6.7E-19 85.2 5.8 64 2-70 3-66 (68)
5 KOG4375 Scaffold protein Shank 98.4 1E-07 2.2E-12 78.6 1.2 39 3-41 210-248 (272)
6 KOG3678 SARM protein (with ste 98.2 1.5E-06 3.3E-11 78.7 5.3 66 2-73 464-530 (832)
7 KOG1170 Diacylglycerol kinase 98.0 2.9E-06 6.4E-11 79.3 2.7 59 2-66 997-1058(1099)
8 KOG1899 LAR transmembrane tyro 97.5 0.00017 3.8E-09 66.4 5.0 37 2-38 622-658 (861)
9 PF02198 SAM_PNT: Sterile alph 97.0 0.0016 3.5E-08 43.5 4.5 62 2-73 19-84 (84)
10 KOG4403 Cell surface glycoprot 96.6 0.0013 2.9E-08 58.7 2.8 41 2-42 134-175 (575)
11 KOG1899 LAR transmembrane tyro 96.1 0.0029 6.3E-08 58.6 1.6 43 2-44 549-591 (861)
12 smart00251 SAM_PNT SAM / Point 96.0 0.015 3.3E-07 39.5 4.4 58 2-70 19-80 (82)
13 cd08757 SAM_PNT_ESE Sterile al 95.9 0.0049 1.1E-07 40.6 1.8 60 2-70 4-67 (68)
14 cd08203 SAM_PNT Sterile alpha 95.4 0.011 2.3E-07 38.6 2.0 57 2-69 4-64 (66)
15 KOG4384 Uncharacterized SAM do 95.3 0.027 5.8E-07 48.5 4.5 66 5-75 215-280 (361)
16 PF09235 Ste50p-SAM: Ste50p, s 95.0 0.018 3.9E-07 40.4 2.2 38 1-38 4-45 (75)
17 KOG0196 Tyrosine kinase, EPH ( 94.8 0.049 1.1E-06 51.7 5.2 64 7-75 925-988 (996)
18 KOG0249 LAR-interacting protei 92.9 0.043 9.3E-07 51.6 1.1 41 10-50 680-720 (916)
19 cd08535 SAM_PNT-Tel_Yan Steril 92.9 0.088 1.9E-06 35.1 2.3 50 2-60 5-58 (68)
20 cd08532 SAM_PNT-PDEF-like Ster 92.8 0.093 2E-06 35.8 2.3 59 2-72 12-74 (76)
21 cd08540 SAM_PNT-ERG Sterile al 92.8 0.078 1.7E-06 36.1 1.9 51 2-60 7-62 (75)
22 KOG1738 Membrane-associated gu 92.2 0.15 3.1E-06 46.8 3.5 55 2-62 6-62 (638)
23 KOG4374 RNA-binding protein Bi 92.1 0.072 1.6E-06 43.1 1.2 43 5-51 151-193 (216)
24 cd08536 SAM_PNT-Mae Sterile al 91.8 0.13 2.8E-06 34.1 2.0 57 1-68 3-63 (66)
25 cd08533 SAM_PNT-ETS-1,2 Steril 91.6 0.12 2.7E-06 34.8 1.8 51 2-60 6-60 (71)
26 cd08531 SAM_PNT-ERG_FLI-1 Ster 90.5 0.23 5E-06 33.7 2.3 51 2-60 7-62 (75)
27 cd08541 SAM_PNT-FLI-1 Sterile 90.3 0.22 4.7E-06 35.4 2.1 51 2-60 19-74 (91)
28 cd08534 SAM_PNT-GABP-alpha Ste 90.2 0.26 5.5E-06 34.6 2.4 51 2-60 21-75 (89)
29 cd08538 SAM_PNT-ESE-2-like Ste 87.5 0.49 1.1E-05 32.8 2.2 61 1-70 8-72 (78)
30 cd08543 SAM_PNT-ETS-2 Sterile 87.3 0.44 9.6E-06 33.7 2.0 51 2-60 21-75 (89)
31 cd08542 SAM_PNT-ETS-1 Sterile 85.1 0.7 1.5E-05 32.6 2.1 61 2-72 21-85 (88)
32 PF12979 DUF3863: Domain of Un 84.9 0.17 3.7E-06 43.4 -1.3 59 5-63 31-96 (351)
33 PF10281 Ish1: Putative stress 80.9 1.6 3.4E-05 25.5 2.1 18 2-19 3-20 (38)
34 KOG3930 Uncharacterized conser 80.3 2.3 4.9E-05 37.3 3.7 51 19-78 20-70 (389)
35 TIGR00014 arsC arsenate reduct 79.5 4.9 0.00011 27.8 4.6 50 2-51 35-85 (114)
36 cd08539 SAM_PNT-ESE-3-like Ste 78.8 1.7 3.6E-05 30.1 2.0 60 2-70 7-70 (74)
37 KOG0249 LAR-interacting protei 73.9 1.9 4.1E-05 41.1 1.6 35 1-35 759-793 (916)
38 PF03960 ArsC: ArsC family; I 70.0 6.1 0.00013 26.7 3.1 48 3-51 33-82 (110)
39 PF14046 NR_Repeat: Nuclear re 67.2 2.9 6.2E-05 27.0 0.9 16 76-91 27-42 (46)
40 COG1393 ArsC Arsenate reductas 65.1 15 0.00033 26.3 4.4 48 3-51 38-86 (117)
41 KOG1945 Protein phosphatase 1 64.5 15 0.00032 32.3 5.0 36 2-37 266-301 (377)
42 cd03032 ArsC_Spx Arsenate Redu 59.8 18 0.0004 24.7 3.9 49 2-51 36-85 (115)
43 cd03034 ArsC_ArsC Arsenate Red 58.3 27 0.00058 24.0 4.6 49 2-51 35-84 (112)
44 cd03035 ArsC_Yffb Arsenate Red 57.8 21 0.00045 24.6 3.9 47 2-51 35-83 (105)
45 PF13907 DUF4208: Domain of un 53.2 18 0.0004 24.9 3.1 26 39-64 38-63 (100)
46 PHA03074 late transcription fa 51.5 26 0.00057 29.0 4.1 51 8-66 91-145 (225)
47 cd08537 SAM_PNT-ESE-1-like Ste 51.1 9.8 0.00021 26.7 1.4 36 2-39 12-53 (78)
48 PF08845 SymE_toxin: Toxin Sym 50.3 7.7 0.00017 25.2 0.8 10 9-18 30-39 (57)
49 PF07308 DUF1456: Protein of u 49.8 8.2 0.00018 25.7 0.9 21 3-23 30-50 (68)
50 PF10453 NUFIP1: Nuclear fragi 49.0 13 0.00027 24.3 1.6 12 4-15 19-30 (56)
51 TIGR01617 arsC_related transcr 48.5 28 0.00061 23.8 3.4 48 3-51 36-86 (117)
52 PRK14470 ribosomal RNA large s 48.3 28 0.0006 28.9 3.9 47 2-68 3-49 (336)
53 PRK12559 transcriptional regul 47.8 39 0.00084 24.2 4.1 49 2-51 36-85 (131)
54 PF12728 HTH_17: Helix-turn-he 46.6 26 0.00057 20.4 2.6 47 4-51 3-49 (51)
55 PF03575 Peptidase_S51: Peptid 45.5 34 0.00074 24.2 3.5 52 18-70 3-57 (154)
56 PF01507 PAPS_reduct: Phosphoa 44.7 16 0.00035 24.9 1.7 18 1-18 137-154 (174)
57 TIGR03147 cyt_nit_nrfF cytochr 44.1 11 0.00024 28.1 0.9 22 38-62 72-93 (126)
58 PF12156 ATPase-cat_bd: Putati 43.8 24 0.00052 24.0 2.4 45 5-49 32-82 (88)
59 PRK10144 formate-dependent nit 43.1 12 0.00026 28.0 0.9 21 39-62 73-93 (126)
60 TIGR01616 nitro_assoc nitrogen 42.6 53 0.0012 23.6 4.2 47 2-51 37-84 (126)
61 PF10044 Ret_tiss: Retinal tis 42.0 13 0.00028 26.7 0.9 33 19-53 39-71 (95)
62 smart00027 EH Eps15 homology d 41.0 27 0.00058 22.8 2.3 58 18-75 10-82 (96)
63 TIGR01764 excise DNA binding d 40.2 43 0.00092 18.3 2.7 46 4-50 3-48 (49)
64 PF03801 Ndc80_HEC: HEC/Ndc80p 40.1 43 0.00093 24.9 3.5 55 5-66 42-104 (157)
65 TIGR01557 myb_SHAQKYF myb-like 39.9 1E+02 0.0022 19.7 4.8 43 1-51 4-52 (57)
66 PF13877 RPAP3_C: Potential Mo 38.8 36 0.00079 22.3 2.6 33 4-37 20-52 (94)
67 PRK14466 ribosomal RNA large s 38.8 72 0.0016 27.0 5.0 47 2-68 9-56 (345)
68 PRK01655 spxA transcriptional 38.2 56 0.0012 23.2 3.7 48 3-51 37-85 (131)
69 KOG1945 Protein phosphatase 1 38.1 9.2 0.0002 33.6 -0.4 36 2-38 148-183 (377)
70 TIGR03700 mena_SCO4494 putativ 36.7 79 0.0017 25.6 4.8 67 4-72 148-232 (351)
71 TIGR00984 3a0801s03tim44 mitoc 36.3 52 0.0011 28.5 3.8 87 18-104 173-293 (378)
72 cd02977 ArsC_family Arsenate R 35.3 1E+02 0.0022 20.3 4.4 13 4-16 37-49 (105)
73 PF03765 CRAL_TRIO_N: CRAL/TRI 34.6 1E+02 0.0022 18.3 4.1 36 6-51 5-40 (55)
74 PF03918 CcmH: Cytochrome C bi 34.6 23 0.0005 26.4 1.3 21 39-62 73-93 (148)
75 PF08700 Vps51: Vps51/Vps67; 34.3 1.2E+02 0.0025 19.3 4.4 22 53-74 47-68 (87)
76 PF12447 DUF3683: Protein of u 34.1 41 0.00088 25.3 2.5 30 36-71 10-40 (115)
77 cd00052 EH Eps15 homology doma 34.0 82 0.0018 18.1 3.4 12 54-65 50-61 (67)
78 COG4776 Rnb Exoribonuclease II 33.8 18 0.00039 33.5 0.7 44 53-108 500-543 (645)
79 cd03033 ArsC_15kD Arsenate Red 32.9 82 0.0018 22.1 3.8 43 3-51 37-83 (113)
80 PF10905 DUF2695: Protein of u 31.9 34 0.00073 22.3 1.6 12 5-16 32-43 (53)
81 TIGR03699 mena_SCO4550 menaqui 31.8 1.3E+02 0.0028 23.9 5.1 63 6-72 143-225 (340)
82 PF15013 CCSMST1: CCSMST1 fami 31.7 21 0.00045 24.9 0.6 27 68-94 14-40 (77)
83 PF12512 DUF3717: Protein of u 31.5 39 0.00085 23.2 1.9 28 42-69 9-36 (71)
84 PF00165 HTH_AraC: Bacterial r 31.3 40 0.00087 19.1 1.7 25 2-27 8-32 (42)
85 TIGR02923 AhaC ATP synthase A1 31.2 1.5E+02 0.0032 23.1 5.3 34 4-37 33-66 (343)
86 cd08315 Death_TRAILR_DR4_DR5 D 31.2 84 0.0018 21.7 3.6 58 13-72 15-80 (96)
87 PF10653 Phage-A118_gp45: Prot 29.9 37 0.00081 23.1 1.6 20 4-23 41-60 (62)
88 cd08316 Death_FAS_TNFRSF6 Deat 29.7 1.4E+02 0.0029 21.0 4.5 60 13-72 16-82 (97)
89 PRK14469 ribosomal RNA large s 29.7 98 0.0021 25.2 4.2 47 2-68 6-53 (343)
90 PRK10026 arsenate reductase; P 29.2 1.3E+02 0.0028 22.3 4.5 49 2-51 38-87 (141)
91 PF05452 Clavanin: Clavanin; 29.0 51 0.0011 23.5 2.2 33 28-61 14-46 (80)
92 KOG1422 Intracellular Cl- chan 28.6 30 0.00064 28.5 1.1 34 56-94 149-187 (221)
93 PRK15451 tRNA cmo(5)U34 methyl 28.0 56 0.0012 24.7 2.4 28 4-31 210-237 (247)
94 PRK02090 phosphoadenosine phos 27.5 46 0.00099 25.6 1.9 18 1-18 176-193 (241)
95 PF12060 DUF3541: Domain of un 27.4 32 0.0007 28.5 1.1 33 10-42 163-195 (227)
96 PF13727 CoA_binding_3: CoA-bi 27.0 66 0.0014 21.5 2.4 36 17-53 130-165 (175)
97 PF07962 Swi3: Replication For 26.1 97 0.0021 21.0 3.1 50 12-66 8-65 (83)
98 KOG3004 Meiotic chromosome se 26.0 95 0.0021 26.7 3.7 60 12-74 71-139 (305)
99 TIGR00048 radical SAM enzyme, 26.0 99 0.0021 25.7 3.7 46 3-68 12-58 (355)
100 KOG0871 Class 2 transcription 25.1 59 0.0013 25.7 2.1 20 4-23 68-87 (156)
101 PF05372 Delta_lysin: Delta ly 25.0 45 0.00098 19.3 1.1 13 54-66 7-19 (25)
102 KOG1937 Uncharacterized conser 24.9 47 0.001 30.4 1.7 23 34-56 22-44 (521)
103 PF13592 HTH_33: Winged helix- 24.9 56 0.0012 20.3 1.7 34 2-56 4-38 (60)
104 TIGR02055 APS_reductase thiore 24.5 61 0.0013 24.1 2.1 19 1-19 130-148 (191)
105 KOG3789 Nitrogen permease regu 24.4 82 0.0018 28.0 3.1 35 7-53 309-343 (396)
106 cd08310 Death_NFkB-like Death 24.3 1.8E+02 0.0039 19.2 4.1 50 13-73 20-69 (72)
107 PF01418 HTH_6: Helix-turn-hel 24.2 80 0.0017 20.3 2.4 19 4-22 47-65 (77)
108 PRK14456 ribosomal RNA large s 23.9 1.2E+02 0.0026 25.6 3.9 46 3-68 23-69 (368)
109 PF08439 Peptidase_M3_N: Oligo 23.7 1.1E+02 0.0023 19.1 2.8 23 4-26 6-29 (70)
110 PRK13605 endoribonuclease SymE 23.5 34 0.00074 25.6 0.5 10 9-18 44-53 (113)
111 PF13354 Beta-lactamase2: Beta 23.4 87 0.0019 22.3 2.6 50 5-54 89-138 (197)
112 PF12760 Zn_Tnp_IS1595: Transp 23.4 64 0.0014 19.2 1.7 18 41-60 2-19 (46)
113 COG0649 NuoD NADH:ubiquinone o 23.2 71 0.0015 28.3 2.5 44 5-48 176-221 (398)
114 COG3088 CcmH Uncharacterized p 23.0 35 0.00077 26.6 0.6 20 40-62 78-97 (153)
115 KOG3321 Mitochondrial ribosoma 23.0 57 0.0012 26.2 1.7 22 33-54 118-139 (175)
116 TIGR00434 cysH phosophoadenyly 23.0 66 0.0014 23.8 2.0 18 1-18 151-168 (212)
117 PRK14454 ribosomal RNA large s 22.4 1.5E+02 0.0033 24.6 4.1 47 2-68 6-53 (342)
118 cd03423 SirA SirA (also known 22.4 65 0.0014 20.3 1.6 15 4-18 38-52 (69)
119 CHL00017 ndhH NADH dehydrogena 22.2 76 0.0016 27.1 2.4 42 6-47 173-216 (393)
120 PRK14467 ribosomal RNA large s 22.0 1.4E+02 0.0031 24.9 4.0 46 3-68 7-53 (348)
121 PF11116 DUF2624: Protein of u 21.3 1.4E+02 0.0031 21.1 3.3 45 25-69 11-66 (85)
122 PF06304 DUF1048: Protein of u 21.3 1.7E+02 0.0037 21.0 3.8 35 28-66 40-82 (103)
123 TIGR00423 radical SAM domain p 21.1 2.2E+02 0.0047 22.5 4.7 65 5-71 106-188 (309)
124 PF00312 Ribosomal_S15: Riboso 21.0 1.2E+02 0.0025 20.4 2.7 56 5-66 21-80 (83)
125 PF06992 Phage_lambda_P: Repli 20.9 1.5E+02 0.0032 24.4 3.8 37 19-65 69-112 (233)
126 PF11989 Dsl1_C: Retrograde tr 20.8 1.4E+02 0.003 24.8 3.7 35 38-72 254-288 (291)
127 PF05409 Peptidase_C30: Corona 20.8 78 0.0017 27.1 2.2 84 4-109 198-281 (293)
128 cd03036 ArsC_like Arsenate Red 20.7 2.3E+02 0.005 19.2 4.2 14 4-17 37-50 (111)
129 KOG3804 Transcription factor N 20.7 43 0.00093 29.1 0.7 76 2-92 64-143 (390)
130 PRK14465 ribosomal RNA large s 20.7 1.6E+02 0.0034 24.8 4.0 45 4-68 11-56 (342)
131 KOG2180 Late Golgi protein sor 20.7 1.6E+02 0.0036 28.3 4.4 24 5-28 230-253 (793)
132 cd08637 DNA_pol_A_pol_I_C Poly 20.3 2.4E+02 0.0052 23.5 4.9 17 4-20 35-52 (377)
No 1
>PF00536 SAM_1: SAM domain (Sterile alpha motif); InterPro: IPR021129 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes. The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents type 1 SAM domains. ; PDB: 2KIV_A 3HIL_B 3KKA_A 3K1R_B 3SEN_B 3SEI_B 1V85_A 2KE7_A 2EAM_A 1WWV_A ....
Probab=99.62 E-value=1.5e-15 Score=93.77 Aligned_cols=63 Identities=29% Similarity=0.481 Sum_probs=56.2
Q ss_pred CCCHHHHHHHHHhcCcchHHHHhhhcCCchhhhhcccccchHHHHHHHHHhhhcchhHHHHHHHHHHHH
Q 033691 2 YLSIKDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIK 70 (113)
Q Consensus 2 ~WS~EDVa~WLeeiGLgqYre~Fk~N~IdG~~Li~Ltk~t~e~ilr~i~r~~~k~Gd~itl~~El~~ik 70 (113)
+|++++|++||+++||++|.+.|.+|.|+|+.|.+| +++-|.-++. .+.||+.++...|+++|
T Consensus 2 ~W~~~~V~~WL~~~~l~~y~~~F~~~~i~g~~L~~l----t~~dL~~lgi--~~~ghr~ki~~~i~~Lk 64 (64)
T PF00536_consen 2 EWSVEDVSEWLKSLGLEQYAENFEKNYIDGEDLLSL----TEEDLEELGI--TKLGHRKKILRAIQKLK 64 (64)
T ss_dssp GTSHHHHHHHHHHTTGGGGHHHHHHTTSSHHHHTTS----CHHHHHHTT---SSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHCCCHHHHHHHHcCCchHHHHHhc----CHHHHHHcCC--CCHHHHHHHHHHHHHhC
Confidence 699999999999999999999999999999999999 5555555666 78899999999999987
No 2
>PF07647 SAM_2: SAM domain (Sterile alpha motif); InterPro: IPR011510 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes. The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents a second domain related to the SAM domain. ; GO: 0005515 protein binding; PDB: 1B0X_A 1X9X_B 1OW5_A 1V38_A 3BS7_A 3BS5_A 3TAD_A 3TAC_B 2K60_A 2DL0_A ....
Probab=99.56 E-value=7.6e-15 Score=90.76 Aligned_cols=63 Identities=32% Similarity=0.499 Sum_probs=56.1
Q ss_pred CCCHHHHHHHHHhcCcchHHHHhhhcCCch-hhhhcccccchHHHHHHHHHhhhcchhHHHHHHHHHHHH
Q 033691 2 YLSIKDVGLWLEEINLGGYRQIFKENGVNG-EYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIK 70 (113)
Q Consensus 2 ~WS~EDVa~WLeeiGLgqYre~Fk~N~IdG-~~Li~Ltk~t~e~ilr~i~r~~~k~Gd~itl~~El~~ik 70 (113)
.||.+||++||..+||++|.+.|++|+|+| +.|..| +++-|.-|+. .+.||+.+++++++.+|
T Consensus 3 ~w~~~~v~~WL~~~gl~~y~~~f~~~~i~g~~~L~~l----~~~~L~~lGI--~~~~~r~kll~~i~~Lk 66 (66)
T PF07647_consen 3 TWSPEDVAEWLKSLGLEQYADNFRENGIDGLEDLLQL----TEEDLKELGI--TNLGHRRKLLSAIQELK 66 (66)
T ss_dssp GHCHHHHHHHHHHTTCGGGHHHHHHTTCSHHHHHTTS----CHHHHHHTTT--THHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHCCcHHHHHHHHHcCCcHHHHHhhC----CHHHHHHcCC--CCHHHHHHHHHHHHHcC
Confidence 599999999999999999999999999999 999888 5555555555 79999999999999987
No 3
>cd00166 SAM Sterile alpha motif.; Widespread domain in signalling and nuclear proteins. In EPH-related tyrosine kinases, appears to mediate cell-cell initiated signal transduction via the binding of SH2-containing proteins to a conserved tyrosine that is phosphorylated. In many cases mediates homodimerization.
Probab=99.54 E-value=1.1e-14 Score=86.85 Aligned_cols=63 Identities=33% Similarity=0.531 Sum_probs=55.2
Q ss_pred CCCHHHHHHHHHhcCcchHHHHhhhcCCchhhhhcccccchHHHHHHHHHhhhcchhHHHHHHHHHHHH
Q 033691 2 YLSIKDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIK 70 (113)
Q Consensus 2 ~WS~EDVa~WLeeiGLgqYre~Fk~N~IdG~~Li~Ltk~t~e~ilr~i~r~~~k~Gd~itl~~El~~ik 70 (113)
.|++++|++||+++|+++|.+.|++|+|+|..|.+| +++-|+.++. ...||+.+++.+++.+|
T Consensus 1 ~w~~~~V~~wL~~~~~~~y~~~f~~~~i~g~~L~~l----~~~dL~~lgi--~~~g~r~~i~~~i~~l~ 63 (63)
T cd00166 1 NWSPEDVAEWLESLGLGQYADNFRENGIDGDLLLLL----TEEDLKELGI--TLPGHRKKILKAIQKLK 63 (63)
T ss_pred CCCHHHHHHHHHHcChHHHHHHHHHcCCCHHHHhHC----CHHHHHHcCC--CCHHHHHHHHHHHHHcC
Confidence 599999999999999999999999999999999988 4455666665 55799999999998764
No 4
>smart00454 SAM Sterile alpha motif. Widespread domain in signalling and nuclear proteins. In EPH-related tyrosine kinases, appears to mediate cell-cell initiated signal transduction via the binding of SH2-containing proteins to a conserved tyrosine that is phosphorylated. In many cases mediates homodimerisation.
Probab=99.52 E-value=3.1e-14 Score=85.15 Aligned_cols=64 Identities=30% Similarity=0.487 Sum_probs=56.9
Q ss_pred CCCHHHHHHHHHhcCcchHHHHhhhcCCchhhhhcccccchHHHHHHHHHhhhcchhHHHHHHHHHHHH
Q 033691 2 YLSIKDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIK 70 (113)
Q Consensus 2 ~WS~EDVa~WLeeiGLgqYre~Fk~N~IdG~~Li~Ltk~t~e~ilr~i~r~~~k~Gd~itl~~El~~ik 70 (113)
.|++++|+.||+.+|+++|.+.|.+|+|+|..|.+|+ +++.+.-++. .+-||+..++..++.+|
T Consensus 3 ~w~~~~v~~wL~~~g~~~y~~~f~~~~i~g~~ll~~~---~~~~l~~lgi--~~~~~r~~ll~~i~~l~ 66 (68)
T smart00454 3 QWSPESVADWLESIGLEQYADNFRKNGIDGALLLLLT---SEEDLKELGI--TKLGHRKKILKAIQKLK 66 (68)
T ss_pred CCCHHHHHHHHHHCChHHHHHHHHHCCCCHHHHHhcC---hHHHHHHcCC--CcHHHHHHHHHHHHHHH
Confidence 6999999999999999999999999999999999885 4666666665 68899999999998876
No 5
>KOG4375 consensus Scaffold protein Shank and related SAM domain proteins [Signal transduction mechanisms]
Probab=98.39 E-value=1e-07 Score=78.61 Aligned_cols=39 Identities=26% Similarity=0.434 Sum_probs=36.9
Q ss_pred CCHHHHHHHHHhcCcchHHHHhhhcCCchhhhhcccccc
Q 033691 3 LSIKDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFT 41 (113)
Q Consensus 3 WS~EDVa~WLeeiGLgqYre~Fk~N~IdG~~Li~Ltk~t 41 (113)
||..||++||+.++|+.|++.|.+|.|||+.|-+|+|-.
T Consensus 210 Wsk~DV~dWLssl~L~E~~~aF~d~eIdG~hLp~l~k~d 248 (272)
T KOG4375|consen 210 WSKIDVNDWLSSLHLIEYDDAFHDIEIDGKHLPLLRKLD 248 (272)
T ss_pred eccccHHHHHHhhhhhhcchhhhhcccccchhhhcchhh
Confidence 999999999999999999999999999999999997743
No 6
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.23 E-value=1.5e-06 Score=78.67 Aligned_cols=66 Identities=24% Similarity=0.409 Sum_probs=54.5
Q ss_pred CCCHHHHHHHHHhcCcchHHHHhhhcCCchhhhhcccccchHHHHHHHHHhhhcch-hHHHHHHHHHHHHHHH
Q 033691 2 YLSIKDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWG-DFITLCKELRRIKVAC 73 (113)
Q Consensus 2 ~WS~EDVa~WLeeiGLgqYre~Fk~N~IdG~~Li~Ltk~t~e~ilr~i~r~~~k~G-d~itl~~El~~ikva~ 73 (113)
-|++-||.-|+.+|||+.|.+.|.++.+||.-|++|| .+.+-++++ |+-| ++=.|+.||+.+|||.
T Consensus 464 gWt~AdVQ~WvkkIGFeeY~EkFakQ~VDGDLLLqLT---EndLk~DvG---M~SGl~RKRFlRELqtLKv~A 530 (832)
T KOG3678|consen 464 GWTCADVQYWVKKIGFEEYVEKFAKQMVDGDLLLQLT---ENDLKHDVG---MISGLHRKRFLRELQTLKVAA 530 (832)
T ss_pred CcchHHHHHHHHHhCHHHHHHHHHHHhccchHHHhhh---hhhhhhhhh---hhhhhhHHHHHHHHHHHHHhh
Confidence 4999999999999999999999999999999999994 333333333 4444 4567999999999985
No 7
>KOG1170 consensus Diacylglycerol kinase [Lipid transport and metabolism]
Probab=98.02 E-value=2.9e-06 Score=79.25 Aligned_cols=59 Identities=29% Similarity=0.511 Sum_probs=49.4
Q ss_pred CCCHHHHHHHHHhcCcchHHHHhhhcCCchhhhhcccccchHHHHHHHHHhhhcchhHHHH---HHHH
Q 033691 2 YLSIKDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITL---CKEL 66 (113)
Q Consensus 2 ~WS~EDVa~WLeeiGLgqYre~Fk~N~IdG~~Li~Ltk~t~e~ilr~i~r~~~k~Gd~itl---~~El 66 (113)
+|+.|+|++|||-+||..|.+.|+.|.|-|.+|++|..=. |.+|+. ||.||+-.+ |+||
T Consensus 997 ~w~seeV~awLe~~~LsEy~d~f~kndirGseLl~L~rrD----Lkdlgv--tkVGhvkril~aIkdl 1058 (1099)
T KOG1170|consen 997 YWTSEEVCAWLESIGLSEYKDTFRKNDIRGSELLHLERRD----LKDLGV--TKVGHVKRILSAIKDL 1058 (1099)
T ss_pred cccHHHHHHHHhccccchhhhhhhccCcccceeeecCccc----ccccch--hhhHHHHHHHHHHHHH
Confidence 6999999999999999999999999999999999996544 344444 899997554 5566
No 8
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=97.45 E-value=0.00017 Score=66.43 Aligned_cols=37 Identities=35% Similarity=0.601 Sum_probs=33.7
Q ss_pred CCCHHHHHHHHHhcCcchHHHHhhhcCCchhhhhccc
Q 033691 2 YLSIKDVGLWLEEINLGGYRQIFKENGVNGEYLEGMS 38 (113)
Q Consensus 2 ~WS~EDVa~WLeeiGLgqYre~Fk~N~IdG~~Li~Lt 38 (113)
.|.+--|-.||..|||+||.+-|-+|-|||+-|..||
T Consensus 622 klDv~wvlRWLDDIGLPQYKdqF~E~rVDgrmL~ylT 658 (861)
T KOG1899|consen 622 KLDVHWVLRWLDDIGLPQYKDQFAENRVDGRMLHYLT 658 (861)
T ss_pred chhHHHHHHHHHhcCChhhHHHHhhhccchhhHhhhh
Confidence 3666679999999999999999999999999999984
No 9
>PF02198 SAM_PNT: Sterile alpha motif (SAM)/Pointed domain; InterPro: IPR003118 Transcription factors are protein molecules that bind to specific DNA sequences in the genome, resulting in the induction or inhibition of gene transcription []. The ets oncogene is such a factor, possessing a region of 85-90 amino acids known as the ETS (erythroblast transformation specific) domain [, ]. This domain is rich in positively-charged and aromatic residues, and binds to purine-rich segments of DNA. The ETS domain IPR000418 from INTERPRO has been identified in other transcription factors such as PU.1, human erg, human elf-1, human elk-1, GA binding protein, and a number of others [, , ]. It is generally localized at the C terminus of the protein, with the exception of ELF-1, ELK-1, ELK-3, ELK-4 and ERF where it is found at the N terminus. This entry describes the highly conserved PNT (or Pointed) domain which is found within a subset of the ETs domain (IPR000418 from INTERPRO ), including mammalian Ets-1, Ets-2, Erg, Fli-1, GABPalpha, and Tel, as well as Drosophila Pnt-P2 and Yan. The PNT domain (IPR001660 from INTERPRO ) through a common tertiary arrangement of four alpha-helices. A role in protein-protein association has been established for the PNT domain [, ].; GO: 0043565 sequence-specific DNA binding, 0005634 nucleus; PDB: 1SXE_A 1SXD_A 2KMD_A 2JV3_A 2E8P_A 1SV4_B 1SV0_B 1LKY_F 1JI7_B 2DKX_A ....
Probab=96.95 E-value=0.0016 Score=43.49 Aligned_cols=62 Identities=31% Similarity=0.484 Sum_probs=41.2
Q ss_pred CCCHHHHHHHHH----hcCcchHHHHhhhcCCchhhhhcccccchHHHHHHHHHhhhcchhHHHHHHHHHHHHHHH
Q 033691 2 YLSIKDVGLWLE----EINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKVAC 73 (113)
Q Consensus 2 ~WS~EDVa~WLe----eiGLgqYre~Fk~N~IdG~~Li~Ltk~t~e~ilr~i~r~~~k~Gd~itl~~El~~ikva~ 73 (113)
.||.+||..||. +.+++. --|..=+|||+.|-.||+ -.|+++.-...||. |-..|+.||-+|
T Consensus 19 ~Wt~~~V~~Wl~w~~~~f~l~~--~~~~~f~~~G~~Lc~lt~------e~F~~~~~~~~G~~--Ly~~L~~Lk~~~ 84 (84)
T PF02198_consen 19 LWTKEDVLQWLRWVVREFDLPA--IDFSRFNMNGRELCSLTK------EDFRRRFPSGYGDI--LYSHLQLLKKCC 84 (84)
T ss_dssp G--HHHHHHHHHHHHHHTT-SS--CHGGGGTS-HHHHHHSHH------HHHHHHSTHTTHHH--HHHHHHHHHHH-
T ss_pred hCCHHHHHHHHHHHHHhcCCCc--CchhccCCCHHHHHHcCH------HHHHHHcCCCcHHH--HHHHHHHHHHcc
Confidence 699999999995 344443 235555999999999953 25777766678885 567788887665
No 10
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=96.64 E-value=0.0013 Score=58.71 Aligned_cols=41 Identities=22% Similarity=0.395 Sum_probs=36.2
Q ss_pred CCCHHHHHHHHHh-cCcchHHHHhhhcCCchhhhhcccccch
Q 033691 2 YLSIKDVGLWLEE-INLGGYRQIFKENGVNGEYLEGMSMFTT 42 (113)
Q Consensus 2 ~WS~EDVa~WLee-iGLgqYre~Fk~N~IdG~~Li~Ltk~t~ 42 (113)
+||.|++-.||-+ ..|+||.+.|+.++|+|..|-.|..-.+
T Consensus 134 nWT~e~tvqWLi~~VeLPqyve~fk~~kv~G~alPRlAv~n~ 175 (575)
T KOG4403|consen 134 NWTNERTVQWLINDVELPQYVEAFKAKKVDGKALPRLAVPNS 175 (575)
T ss_pred cchHHHHHHHHHHhcccHHHHHHHHhccCCcccccccccCch
Confidence 7999999999865 5999999999999999999998865443
No 11
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=96.05 E-value=0.0029 Score=58.65 Aligned_cols=43 Identities=26% Similarity=0.258 Sum_probs=35.3
Q ss_pred CCCHHHHHHHHHhcCcchHHHHhhhcCCchhhhhcccccchHH
Q 033691 2 YLSIKDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQ 44 (113)
Q Consensus 2 ~WS~EDVa~WLeeiGLgqYre~Fk~N~IdG~~Li~Ltk~t~e~ 44 (113)
+|+.|.|++||.++||+||...-+.=--.|+.|..+|.-..|-
T Consensus 549 ~W~~EqvcnWlae~Gl~qY~n~~r~wv~Sg~tfltaS~qd~Ek 591 (861)
T KOG1899|consen 549 DWRSEQVCNWLAEIGLGQYMNEVRRWVRSGRTFLTASPQDYEK 591 (861)
T ss_pred hccHHHHHHHHHHhchHHHHHHHHHHHhcCchhhcCCHHHHHH
Confidence 7999999999999999999987766666777777777655554
No 12
>smart00251 SAM_PNT SAM / Pointed domain. A subfamily of the SAM domain
Probab=95.95 E-value=0.015 Score=39.48 Aligned_cols=58 Identities=31% Similarity=0.456 Sum_probs=40.5
Q ss_pred CCCHHHHHHHHH----hcCcchHHHHhhhcCCchhhhhcccccchHHHHHHHHHhhhcchhHHHHHHHHHHHH
Q 033691 2 YLSIKDVGLWLE----EINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIK 70 (113)
Q Consensus 2 ~WS~EDVa~WLe----eiGLgqYre~Fk~N~IdG~~Li~Ltk~t~e~ilr~i~r~~~k~Gd~itl~~El~~ik 70 (113)
.||.++|..||+ +.+|+.-. |..=+|||++|-.||+ | +|.+|+- .-||. |-..|+.+|
T Consensus 19 ~Wt~~~V~~Wl~w~~~ef~L~~~~--~~~f~m~G~~Lc~ls~---e---dF~~~~p-~~Gdi--L~~hL~~Lk 80 (82)
T smart00251 19 LWTEDHVLEWLEWAVKEFSLSPID--FSKFDMSGKELCSMSK---E---EFLERAP-FGGDI--LWSHLQILR 80 (82)
T ss_pred hCCHHHHHHHHHHHHHhcCCCCCC--cccCCCCHHHHHcCCH---H---HHHHHcC-CchHH--HHHHHHHHH
Confidence 699999999996 45665442 3323899999999954 2 4666754 68886 456666665
No 13
>cd08757 SAM_PNT_ESE Sterile alpha motif (SAM)/Pointed domain of ESE-like ETS transcriptional regulators. SAM Pointed domain of ESE-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. ETS factors are important for cell differentiation. They can be involved in regulation of gene expression in different types of epithelial cells. They are expressed in salivary gland, intestine, stomach, pancreas, lungs, kidneys, colon, mammary gland, and prostate. Members of this group are proto-oncogenes. Expression profiles of these factors are altered in epithelial cancers, which makes them potential targets for cancer therapy.
Probab=95.91 E-value=0.0049 Score=40.63 Aligned_cols=60 Identities=27% Similarity=0.477 Sum_probs=41.7
Q ss_pred CCCHHHHHHHHH----hcCcchHHHHhhhcCCchhhhhcccccchHHHHHHHHHhhhcchhHHHHHHHHHHHH
Q 033691 2 YLSIKDVGLWLE----EINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIK 70 (113)
Q Consensus 2 ~WS~EDVa~WLe----eiGLgqYre~Fk~N~IdG~~Li~Ltk~t~e~ilr~i~r~~~k~Gd~itl~~El~~ik 70 (113)
.||.++|..||. +-+|+.=.--|..-+|||++|-+||+ | +|++|+-- .||.+ -..|++|+
T Consensus 4 ~Wt~~~V~~Wl~w~~~e~~l~~~~i~~~~F~m~Gk~LC~ms~---e---dF~~~~p~-~GdiL--~~~l~~~~ 67 (68)
T cd08757 4 YWTKNDVLEWLQFVAEQNKLDAECISFQKFNIDGQTLCSMTE---E---EFREAAGS-YGSLL--YAELQRLT 67 (68)
T ss_pred hCCHHHHHHHHHHHHHHcCCCCCcCCccccCCCHHHHHcCCH---H---HHHHHcCC-cHHHH--HHHHHHHh
Confidence 699999999997 34666532234444999999999964 2 57777533 89974 45666653
No 14
>cd08203 SAM_PNT Sterile alpha motif (SAM)/Pointed domain. Sterile alpha motif (SAM)/Pointed domain is found in about 40% of transcriptional regulators of ETS family (initially named for Erythroblastosis virus, E26-E Twenty Six). SAM Pointed domain containing proteins of this family additionally have C-terminal ETS DNA-binding domain. In a few cases, SAM Pointed domain appears as a single domain protein. Members of this group are mostly involved in regulation of embryonic development and growth control in eukaryotes. SAM Pointed domains mediate protein-protein interactions. Depending on the subgroup, they can interact with other SAM Pointed domains forming homo or hetero dimers/oligomers and/or they can recruit a protein kinase to its target which can be the SAM Pointed domain containing protein itself or another protein that has no kinase docking site. Thus, SAM Pointed domains participate in transcriptional regulation and signal transduction. Some genes coding ETS family transcripti
Probab=95.42 E-value=0.011 Score=38.56 Aligned_cols=57 Identities=28% Similarity=0.391 Sum_probs=40.2
Q ss_pred CCCHHHHHHHHHh----cCcchHHHHhhhcCCchhhhhcccccchHHHHHHHHHhhhcchhHHHHHHHHHHH
Q 033691 2 YLSIKDVGLWLEE----INLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRI 69 (113)
Q Consensus 2 ~WS~EDVa~WLee----iGLgqYre~Fk~N~IdG~~Li~Ltk~t~e~ilr~i~r~~~k~Gd~itl~~El~~i 69 (113)
.||.++|..||.- -+|+. .-+..-++||+.|-.||+ | +|.+|+-. .||.+ -..|+.+
T Consensus 4 ~Wt~~~V~~Wl~w~~~~f~L~~--~~~~~F~m~G~~Lc~ls~---e---dF~~~~p~-~GdiL--~~hL~~l 64 (66)
T cd08203 4 LWTKEHVLQWLEWAVKEFSLPP--IDFSKFNMNGKELCLLTK---E---DFLRRAPS-GGDIL--YEHLQLL 64 (66)
T ss_pred hCCHHHHHHHHHHHHHhcCCCC--CChhhcCCCHHHHHhCCH---H---HHHHHcCC-cHHHH--HHHHHHH
Confidence 6999999999964 57776 334444999999999954 2 46777544 88864 3444444
No 15
>KOG4384 consensus Uncharacterized SAM domain protein [General function prediction only]
Probab=95.30 E-value=0.027 Score=48.50 Aligned_cols=66 Identities=24% Similarity=0.243 Sum_probs=52.0
Q ss_pred HHHHHHHHHhcCcchHHHHhhhcCCchhhhhcccccchHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhh
Q 033691 5 IKDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKVACLK 75 (113)
Q Consensus 5 ~EDVa~WLeeiGLgqYre~Fk~N~IdG~~Li~Ltk~t~e~ilr~i~r~~~k~Gd~itl~~El~~ikva~~~ 75 (113)
.+-|.+||+.|||+.|-+.|-+|+-| .|.-++.+|.+. |.-|+. ++=+|+=+|++-++.+|-+--.
T Consensus 215 ~~~~~ewL~~i~le~y~~~~L~nGYd--~le~~k~i~e~d-L~~lgI--~nP~Hr~kLL~av~~~~e~d~~ 280 (361)
T KOG4384|consen 215 PKSLEEWLRRIGLEEYIETLLENGYD--TLEDLKDITEED-LEELGI--DNPDHRKKLLSAVELLKEIDSG 280 (361)
T ss_pred chHHHHHHHHhhHHHHHHHHHHcchH--HHHHHHhccHHH-HHHhCC--CCHHHHHHHHHHHHHHHhcccc
Confidence 45689999999999999999999765 255666565544 455666 8999999999999999876443
No 16
>PF09235 Ste50p-SAM: Ste50p, sterile alpha motif; InterPro: IPR015316 The fungal Ste50p SAM domain consists of five helices, which form a compact, globular fold. It is required for mediation of homodimerisation and heterodimerisation (and in some cases oligomerisation) of the protein []. ; PDB: 1UQV_A 1Z1V_A.
Probab=95.01 E-value=0.018 Score=40.36 Aligned_cols=38 Identities=21% Similarity=0.420 Sum_probs=25.1
Q ss_pred CCCCHHHHHHHHH-hcCcch---HHHHhhhcCCchhhhhccc
Q 033691 1 MYLSIKDVGLWLE-EINLGG---YRQIFKENGVNGEYLEGMS 38 (113)
Q Consensus 1 ~~WS~EDVa~WLe-eiGLgq---Yre~Fk~N~IdG~~Li~Lt 38 (113)
.+||+|||..|-- .+|+++ +-.-|++|+|+|.-|.-||
T Consensus 4 ~~Wsv~eVv~WC~~~L~l~~~d~l~~~l~en~I~Gd~L~eLt 45 (75)
T PF09235_consen 4 SNWSVDEVVSWCISSLELDDEDPLCNNLRENDITGDVLPELT 45 (75)
T ss_dssp TT--HHHHHHHHHHHHSS-TTSCHHHHHHHTT--CCCHHHHH
T ss_pred ccccHHHHHHHHHHhcCCCCCCHHHHHHHHccCccchhhhcc
Confidence 4799999999964 446654 4455999999999987773
No 17
>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]
Probab=94.84 E-value=0.049 Score=51.73 Aligned_cols=64 Identities=23% Similarity=0.490 Sum_probs=51.0
Q ss_pred HHHHHHHhcCcchHHHHhhhcCCchhhhhcccccchHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhh
Q 033691 7 DVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKVACLK 75 (113)
Q Consensus 7 DVa~WLeeiGLgqYre~Fk~N~IdG~~Li~Ltk~t~e~ilr~i~r~~~k~Gd~itl~~El~~ikva~~~ 75 (113)
.|++||+.|++++|.+.|.+++++- +...+..|.|.++++ .++--||.=+++--|+.+|.-...
T Consensus 925 sv~~WL~aIkm~rY~~~F~~ag~~s--~~~V~q~s~eDl~~~---Gitl~GhqkkIl~SIq~m~~q~~~ 988 (996)
T KOG0196|consen 925 SVGDWLEAIKMGRYKEHFAAAGYTS--FEDVAQMSAEDLLRL---GITLAGHQKKILSSIQAMRAQMRQ 988 (996)
T ss_pred CHHHHHHHhhhhHHHHHHHhcCccc--HHHHHhhhHHHHHhh---ceeecchhHHHHHHHHHHHHHhcc
Confidence 5899999999999999999999975 445566677776553 457889998888888888876544
No 18
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=92.92 E-value=0.043 Score=51.61 Aligned_cols=41 Identities=27% Similarity=0.437 Sum_probs=36.5
Q ss_pred HHHHhcCcchHHHHhhhcCCchhhhhcccccchHHHHHHHH
Q 033691 10 LWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIR 50 (113)
Q Consensus 10 ~WLeeiGLgqYre~Fk~N~IdG~~Li~Ltk~t~e~ilr~i~ 50 (113)
+||-.+||+|||..|-+-.+|-+-|.+|||-.++--|.-..
T Consensus 680 eWLPslGLpQYrsyFme~LvDARMLdhLsKkdLr~~Lkmvd 720 (916)
T KOG0249|consen 680 EWLPSLGLPQYRSYFMECLVDARMLDHLSKKDLRGHLKMVD 720 (916)
T ss_pred ccccccCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 69999999999999999999999999999988877665443
No 19
>cd08535 SAM_PNT-Tel_Yan Sterile alpha motif (SAM)/Pointed domain of Tel/Yan protein. SAM Pointed domain of Tel (Translocation, Ets, Leukemia)/Yan subfamily of ETS transcriptional repressors is a protein-protein interaction domain. SAM Pointed domains of this type of regulators can interact with each other, forming head-to-tail homodimers or homooligomers, and/or interact with SAM Pointed domains of another subfamily of ETS factors forming heterodimers. The oligomeric form is able to block transcription of target genesand is involved in MAPK signaling. They participate in regulation of different processes during embryo development including hematopoietic differentiation and eye development. Tel/Yan transcriptional factors are frequent targets of chromosomal translocations resulting in fusions of SAM domain with new neighboring genes. Such chimeric proteins were found in different tumors. Members of this subfamily are potential targets for cancer therapy.
Probab=92.88 E-value=0.088 Score=35.15 Aligned_cols=50 Identities=32% Similarity=0.396 Sum_probs=35.7
Q ss_pred CCCHHHHHHHHH----hcCcchHHHHhhhcCCchhhhhcccccchHHHHHHHHHhhhcchhHH
Q 033691 2 YLSIKDVGLWLE----EINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFI 60 (113)
Q Consensus 2 ~WS~EDVa~WLe----eiGLgqYre~Fk~N~IdG~~Li~Ltk~t~e~ilr~i~r~~~k~Gd~i 60 (113)
.||.++|..||. +.+|+.-. |..=++||++|-.||+ | +|.+|+- .-||.+
T Consensus 5 ~Wt~~~V~~WL~wa~~ef~L~~i~--~~~F~mnGk~LC~ls~---e---dF~~r~p-~~GdiL 58 (68)
T cd08535 5 YWSRDDVLQWLRWAENEFSLPPID--SNTFEMNGKALCLLTK---E---DFRYRSP-HSGDVL 58 (68)
T ss_pred hCCHHHHHHHHHHHHHhcCCCCCC--hhccCCCHHHHhcCCH---H---HHhhhCC-CchHHH
Confidence 699999999986 55776632 3334799999999954 3 4556754 468864
No 20
>cd08532 SAM_PNT-PDEF-like Sterile alpha motif (SAM)/Pointed domain of prostate-derived ETS factor. SAM Pointed domain of PDEF-like (Prostate-Derived ETS Factor) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. In human males this activator is highly expressed in the prostate gland and enhances androgen-mediated activation of the PSA promoter though interaction with the DNA binding domain of androgen receptor. PDEF may play a role in prostate cancer development as well as in goblet cell formation and mucus production in the epithelial lining of respiratory and intestinal tracts.
Probab=92.78 E-value=0.093 Score=35.76 Aligned_cols=59 Identities=32% Similarity=0.285 Sum_probs=43.0
Q ss_pred CCCHHHHHHHHH----hcCcchHHHHhhhcCCchhhhhcccccchHHHHHHHHHhhhcchhHHHHHHHHHHHHHH
Q 033691 2 YLSIKDVGLWLE----EINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKVA 72 (113)
Q Consensus 2 ~WS~EDVa~WLe----eiGLgqYre~Fk~N~IdG~~Li~Ltk~t~e~ilr~i~r~~~k~Gd~itl~~El~~ikva 72 (113)
.||.++|..||+ +-+|+. -+..=++||++|-.||+ | +|.+|.-- -||. |-.-|.-+|-|
T Consensus 12 ~Ws~~~V~~WL~w~~~ef~L~~---~~~~F~mnG~~LC~ls~---e---dF~~r~p~-~Gdi--L~~hL~~lk~a 74 (76)
T cd08532 12 QWSPANVQKWLLWTEHQYRLPP---PPRCFELNGKDLCALSE---E---DFRRRAPQ-GGDT--LHAQLDIWKSA 74 (76)
T ss_pred hcCHHHHHHHHHHHHHHhCCCC---chhcCCCCHHHHHcCCH---H---HHHHHcCC-chhH--HHHHHHHHHHh
Confidence 699999999986 568888 34444899999999954 3 56777544 7886 45566666654
No 21
>cd08540 SAM_PNT-ERG Sterile alpha motif (SAM)/Pointed domain of ERG transcription factor. SAM Pointed domain of ERG subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It may participate in formation of homodimers or heterodimers with ETS-2, Fli-1, ER81, and Pu-1. However, dimeric forms are inactive and SAM Pointed domain is not essential for dimerization, since ER81 and Pu-1 do not have it. In mouse, a regulator of this type binds the ESET histone H3-specific methyltransferase (human homolog is SETDB1), followed by modification of local chromatin structure through histone methylation. ERG regulators are involved in endothelial cell differentiation, bone morphogenesis and neural crest development. The Erg gene is a proto-oncogene. It is a target of chromosomal translocations resulting in fusions with new neighboring genes. Chimeric proteins were found in solid tumors such as myeloid leukemia or Ewing's sarcoma. Members of this subfamily are po
Probab=92.77 E-value=0.078 Score=36.11 Aligned_cols=51 Identities=25% Similarity=0.329 Sum_probs=36.1
Q ss_pred CCCHHHHHHHHH----hcCcchHHHHhhh-cCCchhhhhcccccchHHHHHHHHHhhhcchhHH
Q 033691 2 YLSIKDVGLWLE----EINLGGYRQIFKE-NGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFI 60 (113)
Q Consensus 2 ~WS~EDVa~WLe----eiGLgqYre~Fk~-N~IdG~~Li~Ltk~t~e~ilr~i~r~~~k~Gd~i 60 (113)
.||.++|..||. |-+|+.-. +.. .++||++|-.||+ | +|.+|+--.-||++
T Consensus 7 ~Wt~~~V~~WL~Wa~~ef~L~~~~--~~~F~~m~Gk~LC~Lsk---e---dF~~~ap~~~GdiL 62 (75)
T cd08540 7 LWSTDHVRQWLEWAVKEYGLPDVD--VLLFQNIDGKELCKMTK---D---DFQRLTPSYNADIL 62 (75)
T ss_pred hcCHHHHHHHHHHHHHHhCCCCCC--cccccCCCHHHHHhCCH---H---HHHHHcCCCCchHH
Confidence 699999999985 56887643 222 3699999999965 2 46666544567764
No 22
>KOG1738 consensus Membrane-associated guanylate kinase-interacting protein/connector enhancer of KSR-like [Nucleotide transport and metabolism]
Probab=92.23 E-value=0.15 Score=46.79 Aligned_cols=55 Identities=18% Similarity=0.305 Sum_probs=44.2
Q ss_pred CCCHHHHHHHHHhc--CcchHHHHhhhcCCchhhhhcccccchHHHHHHHHHhhhcchhHHHH
Q 033691 2 YLSIKDVGLWLEEI--NLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITL 62 (113)
Q Consensus 2 ~WS~EDVa~WLeei--GLgqYre~Fk~N~IdG~~Li~Ltk~t~e~ilr~i~r~~~k~Gd~itl 62 (113)
.||+..|++|++-+ -+.||...|+++.|.|+.|.++.-.+.+- +.+ -.|||.++.
T Consensus 6 ~wsp~~va~w~rgldd~m~~Y~~~~e~~~~~g~ql~~~~pq~le~----lg~--rrig~qeli 62 (638)
T KOG1738|consen 6 TWTPKQVADWIRGLDDSMQSYLAIFEDALIPGRQLLRLKPQSLET----LGV--RRIGHQELI 62 (638)
T ss_pred ccCchhhhhHhhcccHhhhHHHHHHHHhhcccccccccChHHHHH----Hhh--hhhhhHHHH
Confidence 59999999999977 47899999999999999999996555444 444 567776554
No 23
>KOG4374 consensus RNA-binding protein Bicaudal-C [RNA processing and modification]
Probab=92.09 E-value=0.072 Score=43.13 Aligned_cols=43 Identities=26% Similarity=0.306 Sum_probs=35.5
Q ss_pred HHHHHHHHHhcCcchHHHHhhhcCCchhhhhcccccchHHHHHHHHH
Q 033691 5 IKDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRR 51 (113)
Q Consensus 5 ~EDVa~WLeeiGLgqYre~Fk~N~IdG~~Li~Ltk~t~e~ilr~i~r 51 (113)
-|+|--||.++||+.|+.+|+.-.||=..|..| ||+=|..+..
T Consensus 151 ~~~vl~~L~~lglg~y~~~f~~~evd~~~l~~l----te~dlk~~gi 193 (216)
T KOG4374|consen 151 TEGVLMELGILGLGAYWKMFEAIEVDMDNLRLL----TEEDLKDMGI 193 (216)
T ss_pred cchHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc----ccchhhhhcc
Confidence 378999999999999999999999999999998 4444444443
No 24
>cd08536 SAM_PNT-Mae Sterile alpha motif (SAM)/Pointed domain of Mae protein homolog. Mae (Modulator of the Activity of ETS) subfamily represents a group of SAM Pointed monodomain proteins. SAM Pointed domain is a protein-protein interaction domain. It can interact with other SAM pointed domains forming head-to-tail heterodimers and also provides a kinase docking site. For example, in Drosophila Mae is required for facilitating phosphorylation of the Yan factor and for blocking phosphorylation of the ETS-2 regulator. Mae interacts with the SAM Pointed domains of Yan and ETS-2. Binding enhances access of the kinase to the Yan phosphorylation site by providing a kinase docking site, or inhibits phosphorylation of ETS-2 by blocking its docking site. This type of factors participates in regulation of kinase signaling particularly during embryogenesis.
Probab=91.83 E-value=0.13 Score=34.11 Aligned_cols=57 Identities=26% Similarity=0.345 Sum_probs=39.6
Q ss_pred CCCCHHHHHHHHH----hcCcchHHHHhhhcCCchhhhhcccccchHHHHHHHHHhhhcchhHHHHHHHHHH
Q 033691 1 MYLSIKDVGLWLE----EINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRR 68 (113)
Q Consensus 1 ~~WS~EDVa~WLe----eiGLgqYre~Fk~N~IdG~~Li~Ltk~t~e~ilr~i~r~~~k~Gd~itl~~El~~ 68 (113)
..||.++|..||+ +-+|+.- -+..=++||++|-.||+ | +|++|+-. -||.+ -.++|+
T Consensus 3 ~~Ws~~~V~~WL~w~~~ef~L~~~--~~~~F~m~Gk~LC~ls~---e---dF~~r~P~-~GdiL--~~~lq~ 63 (66)
T cd08536 3 RSWSREHVRTWLRWVSARYQLEVV--DLDKFLMNGKGLCLMSL---E---GFLYRVPV-GGKLL--YEDFQR 63 (66)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCCC--CccccCCCHHHHHcCCH---H---HHHhhcCC-ccHHH--HHHHHH
Confidence 3699999999986 4578773 23333699999999954 3 46677544 88875 444443
No 25
>cd08533 SAM_PNT-ETS-1,2 Sterile alpha motif (SAM)/Pointed domain of ETS-1,2 family. SAM Pointed domain of ETS-1,2 family of transcriptional activators is a protein-protein interaction domain. It carries a kinase docking site and mediates interaction between ETS transcriptional activators and protein kinases. This group of transcriptional factors is involved in the Ras/MAP kinase signaling pathway. MAP kinases phosphorylate the transcription factors. Phosphorylated factors then recruit coactivators and enhance transactivation. Members of this group play a role in regulation of different embryonic developmental processes. ETS-1,2 transcriptional activators are proto-oncogenes involved in malignant transformation and tumor progression. They are potential molecular targets for selective cancer therapy.
Probab=91.62 E-value=0.12 Score=34.84 Aligned_cols=51 Identities=27% Similarity=0.411 Sum_probs=36.7
Q ss_pred CCCHHHHHHHHH----hcCcchHHHHhhhcCCchhhhhcccccchHHHHHHHHHhhhcchhHH
Q 033691 2 YLSIKDVGLWLE----EINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFI 60 (113)
Q Consensus 2 ~WS~EDVa~WLe----eiGLgqYre~Fk~N~IdG~~Li~Ltk~t~e~ilr~i~r~~~k~Gd~i 60 (113)
.||.++|..||+ |.+|..- -|..=+|||++|=.||+ | +|.+|+--.-||.+
T Consensus 6 ~Wt~~~V~~WL~Wa~~ef~L~~v--~~~~F~m~Gk~LC~ls~---e---dF~~~~p~~~GdIL 60 (71)
T cd08533 6 LWTETHVRQWLLWAVNEFSLEGV--NFQKFCMSGRDLCALGK---E---RFLELAPDFVGDIL 60 (71)
T ss_pred hCCHHHHHHHHHHHHHHcCCCCC--CcccCCCCHHHHHcCCH---H---HHHHHcCCCcchHH
Confidence 699999999985 5677643 23333899999999964 2 56777544568874
No 26
>cd08531 SAM_PNT-ERG_FLI-1 Sterile alpha motif (SAM)/Pointed domain of ERG (Ets related gene) and FLI-1 (Friend leukemia integration 1) transcription factors. SAM Pointed domain of ERG/FLI-1 subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. The ERG and FLI regulators are involved in endothelial cell differentiation, bone morphogenesis and neural crest development. They are proto-oncogenes implicated in cancer development such as myeloid leukemia, Ewing's sarcoma and erythroleukemia. Members of this subfamily are potential targets for cancer therapy.
Probab=90.50 E-value=0.23 Score=33.68 Aligned_cols=51 Identities=25% Similarity=0.375 Sum_probs=33.9
Q ss_pred CCCHHHHHHHHH----hcCcchHHHHhhh-cCCchhhhhcccccchHHHHHHHHHhhhcchhHH
Q 033691 2 YLSIKDVGLWLE----EINLGGYRQIFKE-NGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFI 60 (113)
Q Consensus 2 ~WS~EDVa~WLe----eiGLgqYre~Fk~-N~IdG~~Li~Ltk~t~e~ilr~i~r~~~k~Gd~i 60 (113)
.||.++|..||+ |-+|+.- -+.. .++||++|-.||+ | +|.++.---=||.+
T Consensus 7 ~Wt~~~V~~WL~Wa~~ef~L~~i--~~~~F~~m~Gk~LC~lt~---e---dF~~~~~~~~GdiL 62 (75)
T cd08531 7 LWTREHVRQWLEWAVKEYGLQDV--DVSRFQNIDGKELCKMTK---E---DFLRLTSAYNADVL 62 (75)
T ss_pred hcCHHHHHHHHHHHHHHcCCCCC--ChhhccCCChHHHHcCCH---H---HHHHHcCCCcchHH
Confidence 699999999986 5577643 2233 3799999999964 3 35555322246763
No 27
>cd08541 SAM_PNT-FLI-1 Sterile alpha motif (SAM)/Pointed domain of friend leukemia integration 1 transcription activator. SAM Pointed domain of FLI-1 (Friend Leukemia Integration) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. The FLI-1 protein participates in regulation of cellular differentiation, proliferation, and survival. The Fli-1 gene was initially described in Friend virus-induced erythroleukemias as a site for virus integration. It is highly expressed in hematopoietic tissues and at lower level in lungs, heart, and ovaries. Fli-1 is a proto-oncogene implicated in Ewing's sarcoma and erythroleukemia. Members of this subfamily are potential targets for cancer therapy.
Probab=90.26 E-value=0.22 Score=35.37 Aligned_cols=51 Identities=25% Similarity=0.431 Sum_probs=33.3
Q ss_pred CCCHHHHHHHHH----hcCcchHHH-HhhhcCCchhhhhcccccchHHHHHHHHHhhhcchhHH
Q 033691 2 YLSIKDVGLWLE----EINLGGYRQ-IFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFI 60 (113)
Q Consensus 2 ~WS~EDVa~WLe----eiGLgqYre-~Fk~N~IdG~~Li~Ltk~t~e~ilr~i~r~~~k~Gd~i 60 (113)
.||.++|..||. |-+|..--- -|. +|||++|=.||+ | +|.+++----||.+
T Consensus 19 ~Wt~~hV~~WL~Wa~~ef~L~~vd~~~F~--~m~Gk~LC~Lsk---e---dF~~~~p~~~gdiL 74 (91)
T cd08541 19 LWTQEHVRQWLEWAIKEYGLMEIDTSFFQ--NMDGKELCKMNK---E---DFLRATSLYNTEVL 74 (91)
T ss_pred hcCHHHHHHHHHHHHHHcCCCCCChhhcc--CCCHHHHHhCCH---H---HHHHHcCCCccHHH
Confidence 699999999985 567864222 132 699999999864 3 34444322346653
No 28
>cd08534 SAM_PNT-GABP-alpha Sterile alpha motif (SAM)/Pointed domain of GA-binding protein alpha chain. SAM Pointed domain of GABP-alpha subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. This type of transcriptional regulators forms heterotetramers containing two alpha and two beta subunits. It interacts with GA repeats (purine rich repeats). GABP transcriptional factors control gene expression in cell cycle control, apoptosis, and cellular respiration. GABP participates in regulation of transmembrane receptors and key hormones especially in myeloid cells and at the neuromuscular junction.
Probab=90.23 E-value=0.26 Score=34.63 Aligned_cols=51 Identities=22% Similarity=0.333 Sum_probs=37.4
Q ss_pred CCCHHHHHHHHH----hcCcchHHHHhhhcCCchhhhhcccccchHHHHHHHHHhhhcchhHH
Q 033691 2 YLSIKDVGLWLE----EINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFI 60 (113)
Q Consensus 2 ~WS~EDVa~WLe----eiGLgqYre~Fk~N~IdG~~Li~Ltk~t~e~ilr~i~r~~~k~Gd~i 60 (113)
.||.++|..||. +-+|+.- -+..=++||++|-.||+ | +|.+|+--.-||.+
T Consensus 21 ~Wt~~~V~~WL~Wa~~ef~L~~v--~~~~F~m~Gk~LC~Ls~---e---dF~~r~p~~~GdiL 75 (89)
T cd08534 21 EWTEDQVLHWVVWAVKEFSLTDI--DLSDWNITGRELCSLTQ---E---EFFQRVPKDPGDIF 75 (89)
T ss_pred HcCHHHHHHHHHHHHHHcCCCCC--ChhhcCCCHHHHhcCCH---H---HHHHHcCCCccHHH
Confidence 699999999986 5577754 24444799999999964 2 57777554478864
No 29
>cd08538 SAM_PNT-ESE-2-like Sterile alpha motif (SAM)/Pointed domain of ESE-2 like ETS transcriptional regulators. SAM Pointed domain of ESE-2-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. ESE-2 factors are involved in regulation of gene expression in a variety of epithelial (glandular and secretory) cells. ESE-2 mRNA was found in skin keratinocytes, salivary gland, mammary gland, stomach, prostate, and kidneys. The DNA binding consensus motif for ESE-2 consists of a GGA core and AT-rich flanks. The expression profiles of these factors are altered in epithelial cancers. Members of this subfamily are potential targets for cancer therapy.
Probab=87.46 E-value=0.49 Score=32.75 Aligned_cols=61 Identities=25% Similarity=0.391 Sum_probs=43.2
Q ss_pred CCCCHHHHHHHHH----hcCcchHHHHhhhcCCchhhhhcccccchHHHHHHHHHhhhcchhHHHHHHHHHHHH
Q 033691 1 MYLSIKDVGLWLE----EINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIK 70 (113)
Q Consensus 1 ~~WS~EDVa~WLe----eiGLgqYre~Fk~N~IdG~~Li~Ltk~t~e~ilr~i~r~~~k~Gd~itl~~El~~ik 70 (113)
..||.++|..||. +-+|+.-.-.|..=+|||++|=+||+ | +|++++- ..||.+ -..|+.||
T Consensus 8 ~~Ws~~~V~~WL~Wav~ef~L~~~~i~~~~f~m~Gk~LC~ms~---e---eF~~~~p-~~GdvL--y~~lq~~~ 72 (78)
T cd08538 8 EYWTKRHVWEWLQFCCDQYKLDANCISFCHFNISGLQLCSMTQ---E---EFIEAAG-ICGEYL--YFILQNIR 72 (78)
T ss_pred cccCHHHHHHHHHHHHHHcCCCccccchhhcCCCHHHHHcCCH---H---HHHHHcc-cchHHH--HHHHHHHH
Confidence 3699999999985 56777643345555999999999854 3 4666643 388874 45677776
No 30
>cd08543 SAM_PNT-ETS-2 Sterile alpha motif (SAM)/Pointed domain of ETS-2. SAM Pointed domain of ETS-2 subfamily of ETS transcriptional regulators is a protein-protein interaction domain. It contains a docking site for Cdk10 (cyclin-dependent kinase 10), a member of the Cdc2 kinase family. The interaction between ETS-2 and Cdk10 kinase inhibits ETS-2 transactivation activity in mammals. ETS-2 is also regulated by ERK2 MAP kinase. ETS-2, which is phosphorylated by ERK2, can interact with coactivators and enhance transactivation. ETS-2 transcriptional activators are involved in embryonic development and cell cycle control. The Ets-2 gene is a proto-oncogene. It is overexpressed in breast and prostate cancer cells and its overexpression is necessary for transformation of such cells. Members of ETS-2 subfamily are potential molecular targets for selective cancer therapy.
Probab=87.26 E-value=0.44 Score=33.74 Aligned_cols=51 Identities=29% Similarity=0.467 Sum_probs=36.1
Q ss_pred CCCHHHHHHHHH----hcCcchHHHHhhhcCCchhhhhcccccchHHHHHHHHHhhhcchhHH
Q 033691 2 YLSIKDVGLWLE----EINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFI 60 (113)
Q Consensus 2 ~WS~EDVa~WLe----eiGLgqYre~Fk~N~IdG~~Li~Ltk~t~e~ilr~i~r~~~k~Gd~i 60 (113)
.||.++|..||. |.+|..-. |..=+|||++|=.||+ | +|.+|+----||.+
T Consensus 21 ~Wt~~~V~~WL~Wa~~ef~L~~i~--~~~F~m~Gk~LC~Ls~---e---dF~~~ap~~~GdIL 75 (89)
T cd08543 21 LWTEQQVCQWLLWATNEFSLVNVN--FQQFGMNGQELCNLGK---E---RFLELAPDFVGDIL 75 (89)
T ss_pred hCCHHHHHHHHHHHHHHcCCCCCC--cccCCCChHHHHcCCH---H---HHHhHcCCCcchHH
Confidence 699999999985 66777632 2223699999999964 3 46677432358875
No 31
>cd08542 SAM_PNT-ETS-1 Sterile alpha motif (SAM)/Pointed domain of ETS-1. SAM Pointed domain of ETS-1 subfamily of ETS transcriptional activators is a protein-protein interaction domain. The ETS-1 activator is regulated by phosphorylation. It contains a docking site for the ERK2 MAP (Mitogen Activated Protein) kinase, while the ERK2 phosphorylation site is located in the N-terminal disordered region upstream of the SAM Pointed domain. Mutations of the kinase docking site residues inhibit phosphorylation. ETS-1 activators play role in a number of different physiological processes, and they are expressed during embryonic development, including blood vessel formation, hematopoietic, lymphoid, neuronal and osteogenic differentiation. The Ets-1 gene is a proto-oncogene involved in progression of different tumors (including breast cancer, meningioma, and prostate cancer). Members of this subfamily are potential molecular targets for selective cancer therapy.
Probab=85.12 E-value=0.7 Score=32.61 Aligned_cols=61 Identities=23% Similarity=0.315 Sum_probs=40.3
Q ss_pred CCCHHHHHHHHH----hcCcchHHHHhhhcCCchhhhhcccccchHHHHHHHHHhhhcchhHHHHHHHHHHHHHH
Q 033691 2 YLSIKDVGLWLE----EINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKVA 72 (113)
Q Consensus 2 ~WS~EDVa~WLe----eiGLgqYre~Fk~N~IdG~~Li~Ltk~t~e~ilr~i~r~~~k~Gd~itl~~El~~ikva 72 (113)
.||.++|..||+ |.+|..- -|..=++||++|=.||+ | +|.+|+----||.+ -.-|..++-.
T Consensus 21 ~Wt~~~V~~WL~Wa~~ef~L~~i--~~~~F~m~Gk~LC~Ls~---e---dF~~~~P~~~GdIL--~~HL~~L~k~ 85 (88)
T cd08542 21 QWTETHVRDWVMWAVNEFSLKGV--DFQKFCMNGAALCALGK---E---CFLELAPDFVGDIL--WEHLEILQKE 85 (88)
T ss_pred hCCHHHHHHHHHHHHHHcCCCCC--CcccCCCCHHHHHcCCH---H---HHHhHcCCCccHHH--HHHHHHHHHh
Confidence 699999999985 5677654 22333599999999964 3 46777533368874 3444444433
No 32
>PF12979 DUF3863: Domain of Unknown Function with PDB structure (DUF3863); InterPro: IPR024334 This entry represents a functionally uncharacterised domain found in bacterial sequences. The structure of one of the sequences, A6LGL1 from SWISSPROT from Parabacteroides distasonis atcc 8503, has been determined.; PDB: 3LM3_A.
Probab=84.88 E-value=0.17 Score=43.39 Aligned_cols=59 Identities=22% Similarity=0.430 Sum_probs=35.7
Q ss_pred HHHHHHHHHhcCcchHHHHhhhcCCchhhhhccccc-------chHHHHHHHHHhhhcchhHHHHH
Q 033691 5 IKDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMF-------TTEQILRFIRRCHMKWGDFITLC 63 (113)
Q Consensus 5 ~EDVa~WLeeiGLgqYre~Fk~N~IdG~~Li~Ltk~-------t~e~ilr~i~r~~~k~Gd~itl~ 63 (113)
++|=.+|=.-.|...+|++|..|+-||+--=.+|-= .-.||-+|+-+|+-|+||-||+.
T Consensus 31 ~rDE~~wHtl~gVr~~reAfa~~nP~grLTWgft~nALed~~~nyr~IR~y~v~c~~k~GDevsyf 96 (351)
T PF12979_consen 31 PRDETSWHTLEGVRALREAFASNNPDGRLTWGFTLNALEDGRPNYRQIRDYVVECQQKYGDEVSYF 96 (351)
T ss_dssp ----GGG--HHHHHHHHHHHHTT-TT---EEEE-HHHHH--SHHHHHHHHHHHHHHHHH--EEEE-
T ss_pred ccccchhhHHHHHHHHHHHHHhcCCCceEEEeeecchhhcCChhHHHHHHHHHHHHHHhCCceeec
Confidence 456677888889999999999999999843333221 12488999999999999988753
No 33
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=80.86 E-value=1.6 Score=25.51 Aligned_cols=18 Identities=22% Similarity=0.278 Sum_probs=15.7
Q ss_pred CCCHHHHHHHHHhcCcch
Q 033691 2 YLSIKDVGLWLEEINLGG 19 (113)
Q Consensus 2 ~WS~EDVa~WLeeiGLgq 19 (113)
.||.+|..+||++-|.+-
T Consensus 3 tWs~~~L~~wL~~~gi~~ 20 (38)
T PF10281_consen 3 TWSDSDLKSWLKSHGIPV 20 (38)
T ss_pred CCCHHHHHHHHHHcCCCC
Confidence 599999999999988753
No 34
>KOG3930 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.28 E-value=2.3 Score=37.26 Aligned_cols=51 Identities=27% Similarity=0.376 Sum_probs=42.1
Q ss_pred hHHHHhhhcCCchhhhhcccccchHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhCcc
Q 033691 19 GYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKVACLKGEQ 78 (113)
Q Consensus 19 qYre~Fk~N~IdG~~Li~Ltk~t~e~ilr~i~r~~~k~Gd~itl~~El~~ikva~~~~~~ 78 (113)
.|-..|-+|-|.-+-|+.| ...+|+-++. +-.||.|-. ||++|++|-.-+.
T Consensus 20 ~YA~~Fv~NRIqk~MLldL----nKe~l~ElGv--T~iGDiiaI---Lrh~K~v~~q~~r 70 (389)
T KOG3930|consen 20 KYAKSFVTNRIQKEMLLDL----NKETLSELGV--TAIGDIIAI---LRHIKAVKSQIER 70 (389)
T ss_pred hHHHHHHhhhhhHHHHhhh----hHHHHHHhch--hhhhhHHHH---HHHHHHHHHHHHH
Confidence 5999999999999999999 5567777777 788998876 6889998865443
No 35
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=79.48 E-value=4.9 Score=27.82 Aligned_cols=50 Identities=8% Similarity=0.086 Sum_probs=36.4
Q ss_pred CCCHHHHHHHHHhcCcchHHHHhhhcCCchhhhh-cccccchHHHHHHHHH
Q 033691 2 YLSIKDVGLWLEEINLGGYRQIFKENGVNGEYLE-GMSMFTTEQILRFIRR 51 (113)
Q Consensus 2 ~WS~EDVa~WLeeiGLgqYre~Fk~N~IdG~~Li-~Ltk~t~e~ilr~i~r 51 (113)
.+|.+++..|++..|++.+.+.|..++-.=++|. .....|.++++..|..
T Consensus 35 p~t~~el~~~l~~~g~~~~~~lin~~~~~~~~l~~~~~~ls~~e~i~~l~~ 85 (114)
T TIGR00014 35 PPTKSELEAIFAKLGLTVAREMIRTKEALYKELGLSDPNLSDQELLDAMVA 85 (114)
T ss_pred CcCHHHHHHHHHHcCCchHHHHHhcCCcHHHHcCCCccCCCHHHHHHHHHH
Confidence 4789999999999998877888877766555542 1124567888877655
No 36
>cd08539 SAM_PNT-ESE-3-like Sterile alpha motif (SAM)/Pointed domain of ESE-3 like ETS transcriptional regulators. SAM Pointed domain of ESE-3-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. The ESE-3 transcriptional activator is involved in regulation of glandular epithelium differentiation through the MAP kinase signaling cascade. It is found to be expressed in glandular epithelium of prostate, pancreas, salivary gland, and trachea. Additionally, ESE-3 is differentially expressed during monocyte-derived dendritic cells development. DNA binding consensus motif for ESE-3 consists of purine-rich GGAA/T core sequence. The expression profiles of these factors are altered in epithelial cancers. Members of this subfamily are potential targets for cancer therapy.
Probab=78.78 E-value=1.7 Score=30.13 Aligned_cols=60 Identities=30% Similarity=0.498 Sum_probs=38.8
Q ss_pred CCCHHHHHHHHHhc----CcchHHHHhhhcCCchhhhhcccccchHHHHHHHHHhhhcchhHHHHHHHHHHHH
Q 033691 2 YLSIKDVGLWLEEI----NLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIK 70 (113)
Q Consensus 2 ~WS~EDVa~WLeei----GLgqYre~Fk~N~IdG~~Li~Ltk~t~e~ilr~i~r~~~k~Gd~itl~~El~~ik 70 (113)
.||.++|.+||... .|.--..-|..=++||+.|=+|++ | +|+.+.- ..||.+ -..|+.+|
T Consensus 7 ~Wtk~~V~~WL~~~~~~~~~~~~~i~~~~F~MnG~~LC~ms~---e---~F~~~~p-~~GdiL--y~~l~~~~ 70 (74)
T cd08539 7 YWTKYQVWEWLQHLLDTNQLDASCIPFQEFDINGEHLCSMSL---Q---EFTRAAG-TAGQLL--YSNLQHLK 70 (74)
T ss_pred hCCHHHHHHHHHHHHHHcCCCcccccHHHcCCChHHHHccCH---H---HHhhcCC-chHHHH--HHHHHHHh
Confidence 69999999999765 555444456666899999999853 3 3444432 256643 33444443
No 37
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=73.86 E-value=1.9 Score=41.10 Aligned_cols=35 Identities=37% Similarity=0.629 Sum_probs=31.5
Q ss_pred CCCCHHHHHHHHHhcCcchHHHHhhhcCCchhhhh
Q 033691 1 MYLSIKDVGLWLEEINLGGYRQIFKENGVNGEYLE 35 (113)
Q Consensus 1 ~~WS~EDVa~WLeeiGLgqYre~Fk~N~IdG~~Li 35 (113)
+-||-|-|-.|+..|||+.|-.-.++-+|+|.-|-
T Consensus 759 lVWsN~RvirWV~~igL~eya~NL~eSGVHGaLla 793 (916)
T KOG0249|consen 759 LVWSNDRVIRWVQSIGLGEYANNLKESGVHGALLA 793 (916)
T ss_pred eEeecHHHHHHHHhcCHHHHhhhhhhhcccceeee
Confidence 35999999999999999999999999999996443
No 38
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=69.99 E-value=6.1 Score=26.69 Aligned_cols=48 Identities=13% Similarity=0.205 Sum_probs=30.1
Q ss_pred CCHHHHHHHHHhcCcchHHHHhhhcCCchhhhh--cccccchHHHHHHHHH
Q 033691 3 LSIKDVGLWLEEINLGGYRQIFKENGVNGEYLE--GMSMFTTEQILRFIRR 51 (113)
Q Consensus 3 WS~EDVa~WLeeiGLgqYre~Fk~N~IdG~~Li--~Ltk~t~e~ilr~i~r 51 (113)
+|.++..+|++..|.+ +.+.+..++-.=++|. .+..+|+++++..|..
T Consensus 33 ~s~~el~~~l~~~~~~-~~~lin~~~~~~k~l~~~~~~~~s~~e~i~~l~~ 82 (110)
T PF03960_consen 33 LSREELRELLSKLGNG-PDDLINTRSKTYKELGKLKKDDLSDEELIELLLE 82 (110)
T ss_dssp --HHHHHHHHHHHTSS-GGGGB-TTSHHHHHTTHHHCTTSBHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhccc-HHHHhcCccchHhhhhhhhhhhhhhHHHHHHHHh
Confidence 6889999999999955 5555544443333332 3456788888888765
No 39
>PF14046 NR_Repeat: Nuclear receptor repeat
Probab=67.22 E-value=2.9 Score=27.02 Aligned_cols=16 Identities=38% Similarity=0.918 Sum_probs=12.7
Q ss_pred CcccccCCCCCCcchh
Q 033691 76 GEQKVRRPWWAPSCLS 91 (113)
Q Consensus 76 ~~~~~~~~~w~p~~~s 91 (113)
-|-..+.|||.+||-+
T Consensus 27 Pe~~~gapwW~~scga 42 (46)
T PF14046_consen 27 PEARPGAPWWDCSCGA 42 (46)
T ss_pred CcCccCCcccCccccc
Confidence 4567788999999954
No 40
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=65.15 E-value=15 Score=26.26 Aligned_cols=48 Identities=13% Similarity=0.212 Sum_probs=36.6
Q ss_pred CCHHHHHHHHHhcCcchHHHHhhhcCCchhhhh-cccccchHHHHHHHHH
Q 033691 3 LSIKDVGLWLEEINLGGYRQIFKENGVNGEYLE-GMSMFTTEQILRFIRR 51 (113)
Q Consensus 3 WS~EDVa~WLeeiGLgqYre~Fk~N~IdG~~Li-~Ltk~t~e~ilr~i~r 51 (113)
.|.++...||+..|.+ .++.|...+--=++|- ....+|+++.+..|-.
T Consensus 38 ~s~~eL~~~l~~~g~~-~~~li~t~~~~~r~L~~~~~~~~~~~~~~~i~~ 86 (117)
T COG1393 38 PSREELKKILSKLGDG-VEELINTRGTTYRELNLDKEDLSDEELIEALLE 86 (117)
T ss_pred CCHHHHHHHHHHcCcc-HHHHHHhccchHHHcCCcccccChHHHHHHHHh
Confidence 4678888888888888 8888888887777777 2346788888777654
No 41
>KOG1945 consensus Protein phosphatase 1 binding protein spinophilin/neurabin II [Signal transduction mechanisms]
Probab=64.54 E-value=15 Score=32.35 Aligned_cols=36 Identities=25% Similarity=0.254 Sum_probs=34.3
Q ss_pred CCCHHHHHHHHHhcCcchHHHHhhhcCCchhhhhcc
Q 033691 2 YLSIKDVGLWLEEINLGGYRQIFKENGVNGEYLEGM 37 (113)
Q Consensus 2 ~WS~EDVa~WLeeiGLgqYre~Fk~N~IdG~~Li~L 37 (113)
+|+...|.-|+...++.+|..-|..|++.|+-|.++
T Consensus 266 ~~~k~q~~~~~~s~~kei~a~e~a~q~~~~y~L~q~ 301 (377)
T KOG1945|consen 266 TWKKQQVYHWLLSLNKEIYAQEFAAQEQAGYQLLQL 301 (377)
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHhhcccchhhcc
Confidence 699999999999999999999999999999988887
No 42
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=59.76 E-value=18 Score=24.68 Aligned_cols=49 Identities=14% Similarity=0.211 Sum_probs=33.1
Q ss_pred CCCHHHHHHHHHhcCcchHHHHhhhcCCchhhhh-cccccchHHHHHHHHH
Q 033691 2 YLSIKDVGLWLEEINLGGYRQIFKENGVNGEYLE-GMSMFTTEQILRFIRR 51 (113)
Q Consensus 2 ~WS~EDVa~WLeeiGLgqYre~Fk~N~IdG~~Li-~Ltk~t~e~ilr~i~r 51 (113)
.++.+++..|++..|.+ ..+.|..++-.=++|. .....|++++++.|..
T Consensus 36 ~~~~~el~~~~~~~~~~-~~~l~n~~~~~~k~l~~~~~~ls~~e~i~~l~~ 85 (115)
T cd03032 36 PLTKEELKEILSLTENG-VEDIISTRSKAFKNLNIDIDELSLSELIRLISE 85 (115)
T ss_pred cchHHHHHHHHHHhcCC-HHHHHhcCcHHHHHcCCCcccCCHHHHHHHHHh
Confidence 36788999999988764 7777777666555543 1124677777776644
No 43
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=58.33 E-value=27 Score=23.97 Aligned_cols=49 Identities=8% Similarity=0.154 Sum_probs=30.9
Q ss_pred CCCHHHHHHHHHhcCcchHHHHhhhcCCchhhhh-cccccchHHHHHHHHH
Q 033691 2 YLSIKDVGLWLEEINLGGYRQIFKENGVNGEYLE-GMSMFTTEQILRFIRR 51 (113)
Q Consensus 2 ~WS~EDVa~WLeeiGLgqYre~Fk~N~IdG~~Li-~Ltk~t~e~ilr~i~r 51 (113)
.+|.+++..||+..|. +..+.|..++-.=++|- .....|.++++..|..
T Consensus 35 ~~t~~el~~~l~~~~~-~~~~lin~~~~~y~~l~~~~~~ls~~e~i~ll~~ 84 (112)
T cd03034 35 PPTAAELRELLAKLGI-SPRDLLRTKEAPYKELGLADPELSDEELIDAMAA 84 (112)
T ss_pred CcCHHHHHHHHHHcCC-CHHHHHhcCCchHHHcCCCccCCCHHHHHHHHHh
Confidence 3688889999998883 36666666554433331 1125567877776654
No 44
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=57.77 E-value=21 Score=24.57 Aligned_cols=47 Identities=11% Similarity=0.342 Sum_probs=32.2
Q ss_pred CCCHHHHHHHHHhcCcchHHHHhhhcCCchhhhhc--ccccchHHHHHHHHH
Q 033691 2 YLSIKDVGLWLEEINLGGYRQIFKENGVNGEYLEG--MSMFTTEQILRFIRR 51 (113)
Q Consensus 2 ~WS~EDVa~WLeeiGLgqYre~Fk~N~IdG~~Li~--Ltk~t~e~ilr~i~r 51 (113)
.+|.+++.+||++.| +++.|..++-.=++|-- ....|++++++.|..
T Consensus 35 p~s~~eL~~~l~~~g---~~~li~~~~~~yk~l~l~~~~~~s~~e~~~~l~~ 83 (105)
T cd03035 35 GLDAATLERWLAKVG---WETLLNKRGTTWRKLDDAQKAALDAAKAIALMLE 83 (105)
T ss_pred CCCHHHHHHHHHHhC---hHHHHccCchHHHhCChhhhccCCHHHHHHHHHh
Confidence 368899999999988 57778777655444311 134577888777654
No 45
>PF13907 DUF4208: Domain of unknown function (DUF4208)
Probab=53.22 E-value=18 Score=24.90 Aligned_cols=26 Identities=19% Similarity=0.333 Sum_probs=21.9
Q ss_pred ccchHHHHHHHHHhhhcchhHHHHHH
Q 033691 39 MFTTEQILRFIRRCHMKWGDFITLCK 64 (113)
Q Consensus 39 k~t~e~ilr~i~r~~~k~Gd~itl~~ 64 (113)
.++.++-+..+++|..++||||.-|.
T Consensus 38 ~l~~~e~a~~lk~~L~~IG~~I~~~l 63 (100)
T PF13907_consen 38 GLPRKERAKILKKELLKIGDFIDSIL 63 (100)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677779999999999999998664
No 46
>PHA03074 late transcription factor VLTF-3; Provisional
Probab=51.45 E-value=26 Score=28.96 Aligned_cols=51 Identities=29% Similarity=0.499 Sum_probs=35.7
Q ss_pred HHHHHHhc---CcchHHHHhhh-cCCchhhhhcccccchHHHHHHHHHhhhcchhHHHHHHHH
Q 033691 8 VGLWLEEI---NLGGYRQIFKE-NGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKEL 66 (113)
Q Consensus 8 Va~WLeei---GLgqYre~Fk~-N~IdG~~Li~Ltk~t~e~ilr~i~r~~~k~Gd~itl~~El 66 (113)
|.+.|.+. |-..|+..|+= |.+..+.|- .|+|.|-+-+-. |-|+|.||.|-
T Consensus 91 vs~fLK~~~~inkKdYklvfeiiN~~~~e~ln----LttekInei~eI----Fk~lvfF~qen 145 (225)
T PHA03074 91 VSSFLKAKERINKKDYKLVFEIINQVKDEKLN----LTTEKINEVVEI----FKHLVFFCQEN 145 (225)
T ss_pred HHHHHHHHHhcCchhHHHHHHHHHHhhhhccc----ccHHHHHHHHHH----HHHHHHHHhcc
Confidence 67888776 99999999973 444444433 678886444333 77899888873
No 47
>cd08537 SAM_PNT-ESE-1-like Sterile alpha motif (SAM)/Pointed domain of ESE-1 like ETS transcriptional regulators. SAM Pointed domain of ESE-1-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. SAM Pointed domain of ESE-1 provides a potential docking site for signaling kinase Pak1 in humans. ESE-1 factors are involved in regulation of gene expression in different types of epithelial cells. ESE-1 is expressed in many different organs including intestine, stomach, pancreas, lungs, kidneys, and prostate. The DNA binding consensus motif for ESE-1 consists of a purine-rich GGA[AT] core sequence. The expression profile of these factors is altered in epithelial cancers if compared to normal tissues. Members of this subfamily are potential targets for cancer therapy.
Probab=51.07 E-value=9.8 Score=26.74 Aligned_cols=36 Identities=14% Similarity=0.262 Sum_probs=25.0
Q ss_pred CCCHHHHHHHHHhc------CcchHHHHhhhcCCchhhhhcccc
Q 033691 2 YLSIKDVGLWLEEI------NLGGYRQIFKENGVNGEYLEGMSM 39 (113)
Q Consensus 2 ~WS~EDVa~WLeei------GLgqYre~Fk~N~IdG~~Li~Ltk 39 (113)
.||..+|.+||.-. -+.. -.|-.=++||+.|=+|++
T Consensus 12 ~Wtk~qVleWL~~~~e~n~~dl~~--v~f~~F~MnG~~LC~l~~ 53 (78)
T cd08537 12 FWTKTQVLEWISYHVEKNKYDASS--IDFSRCDMDGATLCNCAL 53 (78)
T ss_pred cccHHHHHHHHHHHHHhccCCccc--CCHHHhCCchHHHHccCH
Confidence 59999999999643 2222 124444889999999853
No 48
>PF08845 SymE_toxin: Toxin SymE, type I toxin-antitoxin system; InterPro: IPR014944 This entry represents a SOS-induced gene whose product shows homology to the antitoxin MazE (SymE), the coding region contains a cis-encoded antisense RNA. The small antisense RNA and the gene have the all the hallmarks of a toxin-antitoxin module. The synthesis of the SymE is tightly repressed at multiple levels; at the transcriptional level by the LexA repressor, at the level of mRNA stability and translation by the SymR RNA and at the level of protein stability by the Lon protease. SymE co-purifies with ribosomes and overproduction of the protein leads to cell growth inhibition, decreased protein synthesis and increased RNA degradation. These properties are shared with several RNA endonuclease toxins of toxin-antitoxin modules. It seems probable that the SymE protein represents an evolutionary derivative of a toxin containing the AbrB fold, whose representatives are typically antitoxins. The SymE promoted cleavage of RNA cleavage may be important for the recycling of RNAs damaged under SOS-inducing conditions []. ; GO: 0003723 RNA binding, 0016788 hydrolase activity, acting on ester bonds, 0016070 RNA metabolic process, 0005737 cytoplasm
Probab=50.35 E-value=7.7 Score=25.16 Aligned_cols=10 Identities=50% Similarity=1.013 Sum_probs=8.8
Q ss_pred HHHHHhcCcc
Q 033691 9 GLWLEEINLG 18 (113)
Q Consensus 9 a~WLeeiGLg 18 (113)
|+||++.||.
T Consensus 30 G~WL~~aGF~ 39 (57)
T PF08845_consen 30 GKWLEEAGFT 39 (57)
T ss_pred hhhhHHhCCC
Confidence 7899999994
No 49
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=49.80 E-value=8.2 Score=25.71 Aligned_cols=21 Identities=24% Similarity=0.608 Sum_probs=17.5
Q ss_pred CCHHHHHHHHHhcCcchHHHH
Q 033691 3 LSIKDVGLWLEEINLGGYRQI 23 (113)
Q Consensus 3 WS~EDVa~WLeeiGLgqYre~ 23 (113)
=|.++|++||...+=++|++|
T Consensus 30 vs~~el~a~lrke~~~~y~~c 50 (68)
T PF07308_consen 30 VSKAELSAWLRKEDEKGYKEC 50 (68)
T ss_pred cCHHHHHHHHCCCCCcccccc
Confidence 478899999999888888776
No 50
>PF10453 NUFIP1: Nuclear fragile X mental retardation-interacting protein 1 (NUFIP1); InterPro: IPR019496 Nuclear fragile X mental retardation-interacting protein 1 (Nufip1) has been implicated in the assembly of the large subunit of the ribosome [] and in telomere maintenance []. It is known to bind RNA [] and is phosphorylated upon DNA damage []. This entry represents a conserved domain found within Nufip1. Some proteins containing this region also contain a CCCH zinc finger.
Probab=49.04 E-value=13 Score=24.29 Aligned_cols=12 Identities=25% Similarity=0.725 Sum_probs=10.6
Q ss_pred CHHHHHHHHHhc
Q 033691 4 SIKDVGLWLEEI 15 (113)
Q Consensus 4 S~EDVa~WLeei 15 (113)
|+||++.|+++=
T Consensus 19 t~eeI~~W~eER 30 (56)
T PF10453_consen 19 TPEEIAKWIEER 30 (56)
T ss_pred CHHHHHHHHHHH
Confidence 899999999873
No 51
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=48.47 E-value=28 Score=23.77 Aligned_cols=48 Identities=10% Similarity=0.139 Sum_probs=34.3
Q ss_pred CCHHHHHHHHHhcCcchHHHHhhhcCCchhhhhc---ccccchHHHHHHHHH
Q 033691 3 LSIKDVGLWLEEINLGGYRQIFKENGVNGEYLEG---MSMFTTEQILRFIRR 51 (113)
Q Consensus 3 WS~EDVa~WLeeiGLgqYre~Fk~N~IdG~~Li~---Ltk~t~e~ilr~i~r 51 (113)
.+.+++..|++..|. ++.+.|..++-.=++|.. +..+|+++++..|..
T Consensus 36 ~~~~el~~l~~~~~~-~~~~lin~~~~~~k~l~~~~~~~~ls~~e~~~~i~~ 86 (117)
T TIGR01617 36 PTREELLDILSLLED-GIDPLLNTRGQSYRALNTSNTFLDLSDKEALELLAE 86 (117)
T ss_pred hhHHHHHHHHHHcCC-CHHHheeCCCcchhhCCchhhcccCCHHHHHHHHHh
Confidence 467888888888885 677777777666555541 456788888877754
No 52
>PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=48.29 E-value=28 Score=28.88 Aligned_cols=47 Identities=9% Similarity=-0.081 Sum_probs=31.6
Q ss_pred CCCHHHHHHHHHhcCcchHHHHhhhcCCchhhhhcccccchHHHHHHHHHhhhcchhHHHHHHHHHH
Q 033691 2 YLSIKDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRR 68 (113)
Q Consensus 2 ~WS~EDVa~WLeeiGLgqYre~Fk~N~IdG~~Li~Ltk~t~e~ilr~i~r~~~k~Gd~itl~~El~~ 68 (113)
..+.+++.+|+.+.|++.||. .||.++|.+-+..|.+.-.|=+++|.
T Consensus 3 ~~~~~~~~~~~~~~g~~~~r~--------------------~qi~~~~~~~~~~~~~m~~l~~~~r~ 49 (336)
T PRK14470 3 HLSGQDSRALARPAGISLEDA--------------------RRITGAVIGRGAPLRSARNVRRSVLD 49 (336)
T ss_pred CCCHHHHHHHHHHcCCCcHHH--------------------HHHHHHHHhCCCCHHHhccCCHHHHH
Confidence 467889999999999998884 46666665544445555555555543
No 53
>PRK12559 transcriptional regulator Spx; Provisional
Probab=47.79 E-value=39 Score=24.22 Aligned_cols=49 Identities=10% Similarity=0.187 Sum_probs=30.3
Q ss_pred CCCHHHHHHHHHhcCcchHHHHhhhcCCchhhhh-cccccchHHHHHHHHH
Q 033691 2 YLSIKDVGLWLEEINLGGYRQIFKENGVNGEYLE-GMSMFTTEQILRFIRR 51 (113)
Q Consensus 2 ~WS~EDVa~WLeeiGLgqYre~Fk~N~IdG~~Li-~Ltk~t~e~ilr~i~r 51 (113)
.+|.+++..||+..|+| ..+.|..++-.=++|. .....|+++++..|..
T Consensus 36 ~~s~~el~~~l~~~~~g-~~~lin~~~~~~k~l~~~~~~ls~~e~i~ll~~ 85 (131)
T PRK12559 36 SMTVDELKSILRLTEEG-ATEIISTRSKTFQDLNINIEELSLNEFYKLIIE 85 (131)
T ss_pred cCCHHHHHHHHHHcCCC-HHHHHhcCcHHHHhCCCCcccCCHHHHHHHHHh
Confidence 37899999999998776 4455554443333321 1124567778777654
No 54
>PF12728 HTH_17: Helix-turn-helix domain
Probab=46.62 E-value=26 Score=20.37 Aligned_cols=47 Identities=11% Similarity=0.150 Sum_probs=25.3
Q ss_pred CHHHHHHHHHhcCcchHHHHhhhcCCchhhhhcccccchHHHHHHHHH
Q 033691 4 SIKDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRR 51 (113)
Q Consensus 4 S~EDVa~WLeeiGLgqYre~Fk~N~IdG~~Li~Ltk~t~e~ilr~i~r 51 (113)
|++|+|+.|. +.=......-++..|.....-+-..|+.+.+.+|+.+
T Consensus 3 t~~e~a~~l~-is~~tv~~~~~~g~i~~~~~g~~~~~~~~~l~~~~~~ 49 (51)
T PF12728_consen 3 TVKEAAELLG-ISRSTVYRWIRQGKIPPFKIGRKWRIPKSDLDRWLER 49 (51)
T ss_pred CHHHHHHHHC-cCHHHHHHHHHcCCCCeEEeCCEEEEeHHHHHHHHHh
Confidence 4455555443 3434444444444444433333366778888888875
No 55
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=45.50 E-value=34 Score=24.21 Aligned_cols=52 Identities=23% Similarity=0.327 Sum_probs=37.8
Q ss_pred chHHHHhhhcCCchhhhhcccccchHHHHHHHHHh---hhcchhHHHHHHHHHHHH
Q 033691 18 GGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRC---HMKWGDFITLCKELRRIK 70 (113)
Q Consensus 18 gqYre~Fk~N~IdG~~Li~Ltk~t~e~ilr~i~r~---~~k~Gd~itl~~El~~ik 70 (113)
..|++.|.+-++. -..+.+.+.+.+.+.+.|+.. ...=||...+++-|+.-+
T Consensus 3 ~~~~~~f~~~g~~-v~~l~~~~~~~~~~~~~i~~ad~I~~~GG~~~~l~~~l~~t~ 57 (154)
T PF03575_consen 3 EKFRKAFRKLGFE-VDQLDLSDRNDADILEAIREADAIFLGGGDTFRLLRQLKETG 57 (154)
T ss_dssp HHHHHHHHHCT-E-EEECCCTSCGHHHHHHHHHHSSEEEE--S-HHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCE-EEEEeccCCChHHHHHHHHhCCEEEECCCCHHHHHHHHHhCC
Confidence 5689999998888 666677777788889999887 455599998888877644
No 56
>PF01507 PAPS_reduct: Phosphoadenosine phosphosulfate reductase family; InterPro: IPR002500 This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases []. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) [, ]. It is also found in NodP nodulation protein P from Rhizobium meliloti (Sinorhizobium meliloti) which has ATP sulphurylase activity (sulphate adenylate transferase) [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GOY_C 3G5A_C 3G6K_D 3G59_A 3FWK_A 2WSI_A 2OQ2_B 1SUR_A 2O8V_A 1ZUN_A.
Probab=44.68 E-value=16 Score=24.87 Aligned_cols=18 Identities=17% Similarity=0.076 Sum_probs=12.1
Q ss_pred CCCCHHHHHHHHHhcCcc
Q 033691 1 MYLSIKDVGLWLEEINLG 18 (113)
Q Consensus 1 ~~WS~EDVa~WLeeiGLg 18 (113)
.+||.+||-+.|...|++
T Consensus 137 ~~wt~~dV~~yi~~~~l~ 154 (174)
T PF01507_consen 137 ADWTEEDVWDYIKANGLP 154 (174)
T ss_dssp TT--HHHHHHHHHHHT--
T ss_pred hhCCHHHHHHHHHHhcCC
Confidence 479999999999988886
No 57
>TIGR03147 cyt_nit_nrfF cytochrome c nitrite reductase, accessory protein NrfF.
Probab=44.12 E-value=11 Score=28.10 Aligned_cols=22 Identities=27% Similarity=0.628 Sum_probs=17.7
Q ss_pred cccchHHHHHHHHHhhhcchhHHHH
Q 033691 38 SMFTTEQILRFIRRCHMKWGDFITL 62 (113)
Q Consensus 38 tk~t~e~ilr~i~r~~~k~Gd~itl 62 (113)
..-|++||+.|+.. .|||||.+
T Consensus 72 ~G~Sd~eI~~~~v~---RYG~~Vly 93 (126)
T TIGR03147 72 EGKSNQQIIDFMTA---RFGDFVLY 93 (126)
T ss_pred cCCCHHHHHHHHHH---hcCCeEEe
Confidence 35689999999876 89999854
No 58
>PF12156 ATPase-cat_bd: Putative metal-binding domain of cation transport ATPase; InterPro: IPR021993 This domain is found in bacteria, and is approximately 90 amino acids in length. It is found associated with PF00403 from PFAM, PF00122 from PFAM, PF00702 from PFAM. The cysteine-rich nature and composition suggest this might be a cation-binding domain; most members are annotated as being cation transport ATPases.
Probab=43.76 E-value=24 Score=24.01 Aligned_cols=45 Identities=20% Similarity=0.370 Sum_probs=34.8
Q ss_pred HHHHHHHHHhcCcchHHHHhhhcCCchhh-----hhcccccchHHH-HHHH
Q 033691 5 IKDVGLWLEEINLGGYRQIFKENGVNGEY-----LEGMSMFTTEQI-LRFI 49 (113)
Q Consensus 5 ~EDVa~WLeeiGLgqYre~Fk~N~IdG~~-----Li~Ltk~t~e~i-lr~i 49 (113)
++.|+..|.+-||++|=+.=.+....-.. +..+..|.++.+ -+|+
T Consensus 32 C~~V~~~i~~~gL~~yY~~r~~~~~~p~~~~~~~~~~~~~~D~~~v~~~fv 82 (88)
T PF12156_consen 32 CQAVYQLIHENGLESYYQKRTDPGLSPDPLVPDQLEDLAYYDDPEVQQKFV 82 (88)
T ss_pred HHHHHHHHHHcchHHHHhccCccCCCCcccccccHHHHHHcCCHHHHHHHh
Confidence 57899999999999998877777776665 556777777777 3444
No 59
>PRK10144 formate-dependent nitrite reductase complex subunit NrfF; Provisional
Probab=43.13 E-value=12 Score=28.01 Aligned_cols=21 Identities=19% Similarity=0.548 Sum_probs=17.2
Q ss_pred ccchHHHHHHHHHhhhcchhHHHH
Q 033691 39 MFTTEQILRFIRRCHMKWGDFITL 62 (113)
Q Consensus 39 k~t~e~ilr~i~r~~~k~Gd~itl 62 (113)
.-|++||+.|+.. .|||||.+
T Consensus 73 G~sd~eI~~~~v~---RYG~~Vl~ 93 (126)
T PRK10144 73 GKSEVEIIGWMTE---RYGDFVRY 93 (126)
T ss_pred CCCHHHHHHHHHH---hcCCeEEe
Confidence 4589999999876 89999853
No 60
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=42.64 E-value=53 Score=23.62 Aligned_cols=47 Identities=6% Similarity=-0.005 Sum_probs=28.8
Q ss_pred CCCHHHHHHHHHhcCcchHHHHhhhcCCchhhhh-cccccchHHHHHHHHH
Q 033691 2 YLSIKDVGLWLEEINLGGYRQIFKENGVNGEYLE-GMSMFTTEQILRFIRR 51 (113)
Q Consensus 2 ~WS~EDVa~WLeeiGLgqYre~Fk~N~IdG~~Li-~Ltk~t~e~ilr~i~r 51 (113)
.+|.+++..||+..| ..+.|..++-.-++|. .....|+++++.-|..
T Consensus 37 p~t~~eL~~~l~~~g---~~~lin~~~~~~r~l~~~~~~ls~~e~i~lm~~ 84 (126)
T TIGR01616 37 PWHADTLRPYFGNKP---VGSWFNRAAPRVKSGEVNPDSIDEASALALMVS 84 (126)
T ss_pred CcCHHHHHHHHHHcC---HHHHHhccchHhhhCCCCcccCCHHHHHHHHHh
Confidence 478999999999986 4455555544444432 1123466777766543
No 61
>PF10044 Ret_tiss: Retinal tissue protein; InterPro: IPR018737 Rtp is a family of proteins of approximately 112 amino acids in length which is conserved from nematodes to humans. The proposed tertiary structure is of almost entirely alpha helix interrupted only by loops located at proline residues. Three sites in the protein sequence reveal two types of possible post-translation modification. A serine residue, at position 41, is a candidate for protein kinase C phosphorylation. Glycine residues at position 69 and 91 are probable sites for acetylation by covalent amide linkage of myristate via N-myristoyl transferase. Rtp is differentially expressed in the trout retina between parr and smolt developmental stages (smoltification). It is likely to be a house-keeping protein [].
Probab=41.95 E-value=13 Score=26.67 Aligned_cols=33 Identities=18% Similarity=0.383 Sum_probs=25.9
Q ss_pred hHHHHhhhcCCchhhhhcccccchHHHHHHHHHhh
Q 033691 19 GYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCH 53 (113)
Q Consensus 19 qYre~Fk~N~IdG~~Li~Ltk~t~e~ilr~i~r~~ 53 (113)
.|..-|+++.+ +.+-.|++.|+++++.+|+.+|
T Consensus 39 ~~~~~l~~dD~--~~~~eLs~Lt~~~L~~~Ik~L~ 71 (95)
T PF10044_consen 39 KWLQELTKDDM--EKMNELSSLTPDQLIEKIKKLQ 71 (95)
T ss_pred ccccccCHHHH--HHHHHHHcCCHHHHHHHHHHHH
Confidence 34445666666 5888999999999999999875
No 62
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=40.99 E-value=27 Score=22.84 Aligned_cols=58 Identities=14% Similarity=0.104 Sum_probs=34.3
Q ss_pred chHHHHhhhcCCchhh------hhc---ccccchHHHHHHHHHh------hhcchhHHHHHHHHHHHHHHHhh
Q 033691 18 GGYRQIFKENGVNGEY------LEG---MSMFTTEQILRFIRRC------HMKWGDFITLCKELRRIKVACLK 75 (113)
Q Consensus 18 gqYre~Fk~N~IdG~~------Li~---Ltk~t~e~ilr~i~r~------~~k~Gd~itl~~El~~ikva~~~ 75 (113)
..|+++|..-..||.- |.. -..++.+++-+.++.. .+.+-+|+.++.-+++.+-.+.+
T Consensus 10 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~~~~g~~~ 82 (96)
T smart00027 10 AKYEQIFRSLDKNQDGTVTGAQAKPILLKSGLPQTLLAKIWNLADIDNDGELDKDEFALAMHLIYRKLNGYPI 82 (96)
T ss_pred HHHHHHHHHhCCCCCCeEeHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHHHcCCCC
Confidence 3566777665544432 211 1245656555555543 47788888888888887765554
No 63
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=40.16 E-value=43 Score=18.29 Aligned_cols=46 Identities=7% Similarity=0.190 Sum_probs=28.3
Q ss_pred CHHHHHHHHHhcCcchHHHHhhhcCCchhhhhcccccchHHHHHHHH
Q 033691 4 SIKDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIR 50 (113)
Q Consensus 4 S~EDVa~WLeeiGLgqYre~Fk~N~IdG~~Li~Ltk~t~e~ilr~i~ 50 (113)
|.+||++-| .++-......-++..|.+...-+-..|+.+.+.+|+.
T Consensus 3 t~~e~a~~l-gis~~ti~~~~~~g~i~~~~~g~~~~~~~~~l~~~~~ 48 (49)
T TIGR01764 3 TVEEAAEYL-GVSKDTVYRLIHEGELPAYRVGRHYRIPREDVDEYLE 48 (49)
T ss_pred CHHHHHHHH-CCCHHHHHHHHHcCCCCeEEeCCeEEEeHHHHHHHHh
Confidence 556666655 2555555555555556655555566778888877764
No 64
>PF03801 Ndc80_HEC: HEC/Ndc80p family; InterPro: IPR005550 Members of this family are components of the mitotic spindle. It has been shown that Ndc80 from yeast is part of a complex called the Ndc80p complex []. This complex is thought to bind to the microtubules of the spindle.; PDB: 3IZ0_E 2VE7_B 2IGP_A.
Probab=40.08 E-value=43 Score=24.89 Aligned_cols=55 Identities=22% Similarity=0.334 Sum_probs=28.2
Q ss_pred HHHHHHHHHhcCcchHHHHhhhcCCchhhhhcccccchHHHHHHHHHh---hhcch-----hHHHHHHHH
Q 033691 5 IKDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRC---HMKWG-----DFITLCKEL 66 (113)
Q Consensus 5 ~EDVa~WLeeiGLgqYre~Fk~N~IdG~~Li~Ltk~t~e~ilr~i~r~---~~k~G-----d~itl~~El 66 (113)
+++|-++|.+.|+ ..+.|.-+.|.+.|.=.---|++||-++ ..++| |++.++|.|
T Consensus 42 ~~~I~~fL~~~~~-------~~~~is~k~l~~Pt~kdf~~I~~fL~~~idp~~~~~~k~eeev~~~lK~L 104 (157)
T PF03801_consen 42 IRKIYEFLSEHGF-------ESHPISPKTLKSPTQKDFVEIFNFLFRQIDPNFKFGKKFEEEVPFLLKAL 104 (157)
T ss_dssp HHHHHHHHHHTT---------SS---TTTTSS--HHHHHHHHHHHHHTTSTT---SSTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCC-------CCccccccccCCCCHHHHHHHHHHHHHHhCCCCCcCcCHHHHHHHHHHHh
Confidence 4678899999988 2445555555555444444557777665 23444 555555555
No 65
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=39.91 E-value=1e+02 Score=19.74 Aligned_cols=43 Identities=12% Similarity=0.196 Sum_probs=28.2
Q ss_pred CCCCHHHHHHHHHhc---CcchH---HHHhhhcCCchhhhhcccccchHHHHHHHHH
Q 033691 1 MYLSIKDVGLWLEEI---NLGGY---RQIFKENGVNGEYLEGMSMFTTEQILRFIRR 51 (113)
Q Consensus 1 ~~WS~EDVa~WLeei---GLgqY---re~Fk~N~IdG~~Li~Ltk~t~e~ilr~i~r 51 (113)
+.||.|+=...|+-+ |.|.. +.+= ++...++.|.+||-..+..
T Consensus 4 ~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~--------~~~~~~~lT~~qV~SH~QK 52 (57)
T TIGR01557 4 VVWTEDLHDRFLQAVQKLGGPDWATPKRIL--------ELMVVDGLTRDQVASHLQK 52 (57)
T ss_pred CCCCHHHHHHHHHHHHHhCCCcccchHHHH--------HHcCCCCCCHHHHHHHHHH
Confidence 469999998887755 65555 4431 3444567788888665544
No 66
>PF13877 RPAP3_C: Potential Monad-binding region of RPAP3
Probab=38.82 E-value=36 Score=22.34 Aligned_cols=33 Identities=21% Similarity=0.361 Sum_probs=28.1
Q ss_pred CHHHHHHHHHhcCcchHHHHhhhcCCchhhhhcc
Q 033691 4 SIKDVGLWLEEINLGGYRQIFKENGVNGEYLEGM 37 (113)
Q Consensus 4 S~EDVa~WLeeiGLgqYre~Fk~N~IdG~~Li~L 37 (113)
+.++-...|..++-.+|..+|++ +|++.-|..+
T Consensus 20 ~~~~~~~yL~~i~p~~l~~if~~-~l~~~~L~~i 52 (94)
T PF13877_consen 20 DPEERYEYLKSIPPDSLPKIFKN-SLEPEFLSEI 52 (94)
T ss_pred CHHHHHHHHHhCChHHHHHHHHc-cCCHHHHHHH
Confidence 45678899999999999999998 8888877654
No 67
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=38.77 E-value=72 Score=26.99 Aligned_cols=47 Identities=6% Similarity=0.183 Sum_probs=36.1
Q ss_pred CCCHHHHHHHHHhcCcchHHHHhhhcCCchhhhhcccccchHHHHHHHHHh-hhcchhHHHHHHHHHH
Q 033691 2 YLSIKDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRC-HMKWGDFITLCKELRR 68 (113)
Q Consensus 2 ~WS~EDVa~WLeeiGLgqYre~Fk~N~IdG~~Li~Ltk~t~e~ilr~i~r~-~~k~Gd~itl~~El~~ 68 (113)
..+.+++.+|+.+.|++.|| ..||.++|.+- ...|.+.-.|=+++|.
T Consensus 9 ~l~~~el~~~~~~~g~~~fr--------------------a~Qi~~wi~~~~~~~~~~mt~l~~~~r~ 56 (345)
T PRK14466 9 GMTLEELQSVAKRLGMPAFA--------------------AKQIASWLYDKKVTSIDEMTNISLAHRE 56 (345)
T ss_pred cCCHHHHHHHHHHcCCCchH--------------------HHHHHHHHHhcCCCCHHHHhhhhHHHHH
Confidence 46788899999999988887 46888888764 4567777777777775
No 68
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=38.24 E-value=56 Score=23.19 Aligned_cols=48 Identities=15% Similarity=0.254 Sum_probs=30.2
Q ss_pred CCHHHHHHHHHhcCcchHHHHhhhcCCchhhhh-cccccchHHHHHHHHH
Q 033691 3 LSIKDVGLWLEEINLGGYRQIFKENGVNGEYLE-GMSMFTTEQILRFIRR 51 (113)
Q Consensus 3 WS~EDVa~WLeeiGLgqYre~Fk~N~IdG~~Li-~Ltk~t~e~ilr~i~r 51 (113)
++.+++.+|+...|.| +.+.|..++-.=++|. +....|+++++..|..
T Consensus 37 ~~~~eL~~~l~~~~~g-~~~lin~~~~~~k~l~~~~~~ls~~e~i~ll~~ 85 (131)
T PRK01655 37 LTIDEIKQILRMTEDG-TDEIISTRSKVFQKLNVDVESLSLQDLIKLISD 85 (131)
T ss_pred hhHHHHHHHHHHhcCC-HHHHHhcCcHHHHhCCCCcccCCHHHHHHHHHh
Confidence 5778999999998765 6666655544433331 1124567777776654
No 69
>KOG1945 consensus Protein phosphatase 1 binding protein spinophilin/neurabin II [Signal transduction mechanisms]
Probab=38.05 E-value=9.2 Score=33.55 Aligned_cols=36 Identities=14% Similarity=-0.009 Sum_probs=32.1
Q ss_pred CCCHHHHHHHHHhcCcchHHHHhhhcCCchhhhhccc
Q 033691 2 YLSIKDVGLWLEEINLGGYRQIFKENGVNGEYLEGMS 38 (113)
Q Consensus 2 ~WS~EDVa~WLeeiGLgqYre~Fk~N~IdG~~Li~Lt 38 (113)
.|++|||..|+++-++ -|...|-.|++-|-.+..++
T Consensus 148 ~~sved~~~s~~~k~l-p~vp~s~~~es~g~S~~~~n 183 (377)
T KOG1945|consen 148 RWSVEDVEVSVDSKSL-PGVPFSWFAESLGGSSSRVN 183 (377)
T ss_pred cccccccccccccCCC-CCcchhhhhcccccchhccC
Confidence 5999999999999999 78999999999998877663
No 70
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=36.67 E-value=79 Score=25.63 Aligned_cols=67 Identities=18% Similarity=0.160 Sum_probs=41.6
Q ss_pred CHHHHHHHHHhcCcchHHHH-hhhcCCchhhhhcc--cccchHHHHHHHHHh---------hhcch------hHHHHHHH
Q 033691 4 SIKDVGLWLEEINLGGYRQI-FKENGVNGEYLEGM--SMFTTEQILRFIRRC---------HMKWG------DFITLCKE 65 (113)
Q Consensus 4 S~EDVa~WLeeiGLgqYre~-Fk~N~IdG~~Li~L--tk~t~e~ilr~i~r~---------~~k~G------d~itl~~E 65 (113)
+.+|+...|.+.|+..|-.. .+. .+-+.+..+ ++.+.++.++-|+++ .|=+| |++..+..
T Consensus 148 ~~~e~l~~LkeAGld~~~~~g~E~--~~~~v~~~i~~~~~~~~~~l~~i~~a~~~Gi~~~sg~i~GlgEt~edrv~~l~~ 225 (351)
T TIGR03700 148 PTEEVLDELKEAGLDSMPGGGAEI--FAEEVRQQICPEKISAERWLEIHRTAHELGLKTNATMLYGHIETPAHRVDHMLR 225 (351)
T ss_pred CHHHHHHHHHHcCCCcCCCCcccc--cCHHHHhhcCCCCCCHHHHHHHHHHHHHcCCCcceEEEeeCCCCHHHHHHHHHH
Confidence 35677777888888766421 110 011222333 356777876666665 33455 99999999
Q ss_pred HHHHHHH
Q 033691 66 LRRIKVA 72 (113)
Q Consensus 66 l~~ikva 72 (113)
||.+.+.
T Consensus 226 Lr~l~~~ 232 (351)
T TIGR03700 226 LRELQDE 232 (351)
T ss_pred HHHhhHh
Confidence 9999884
No 71
>TIGR00984 3a0801s03tim44 mitochondrial import inner membrane, translocase subunit. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tim proteins.
Probab=36.35 E-value=52 Score=28.55 Aligned_cols=87 Identities=21% Similarity=0.275 Sum_probs=61.5
Q ss_pred chHHHHhhhcCCchhhhhccc---ccchHHHHHHHHHhhhc-----------------------------chhHHHHHHH
Q 033691 18 GGYRQIFKENGVNGEYLEGMS---MFTTEQILRFIRRCHMK-----------------------------WGDFITLCKE 65 (113)
Q Consensus 18 gqYre~Fk~N~IdG~~Li~Lt---k~t~e~ilr~i~r~~~k-----------------------------~Gd~itl~~E 65 (113)
++=-+-|++|+--|+.|..|- ..|+-|+++-+|-+--| -.+|+.-|++
T Consensus 173 ~~~w~~fk~~~~~~~~~~~lk~~~~eSeNp~i~~~r~itdkv~~~~~~lF~ete~a~~l~eIk~~DPsFd~~~Fl~gar~ 252 (378)
T TIGR00984 173 YSKVEDFKESNVVYRKIQELKKKYDESENPLVRMMRGVTDKIGGVFSGMFSETEVSEVLTEFKKIDPTFDKEHFLRFLRE 252 (378)
T ss_pred HHHHHHHHhhCHHHHHHHHHHHHhhcccChhhhHhHHhhhhhhhhhhcccCCCHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 444567888888888776553 23455666555443333 3568888888
Q ss_pred H--HHHHHHHhhCcccccCCCCCCcchhhHhHHHhhhcccc
Q 033691 66 L--RRIKVACLKGEQKVRRPWWAPSCLSVVFVKVAKRNRQS 104 (113)
Q Consensus 66 l--~~ikva~~~~~~~~~~~~w~p~~~s~v~~~~~~~~~~~ 104 (113)
- -.|=-|.++|.-+.-+||=.|..+.+.-..+..+..|.
T Consensus 253 aI~p~ILeAf~kGD~e~LK~~lse~vy~~f~a~I~qr~~~G 293 (378)
T TIGR00984 253 YIVPEILEAYVKGDLEVLKSWCSEAPFSVYATVVKEYKKMG 293 (378)
T ss_pred HHHHHHHHHHHcCCHHHHHHhhCHHHHHHHHHHHHHHHHCC
Confidence 7 45788999999999999999998887777666666554
No 72
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=35.33 E-value=1e+02 Score=20.31 Aligned_cols=13 Identities=8% Similarity=0.230 Sum_probs=6.7
Q ss_pred CHHHHHHHHHhcC
Q 033691 4 SIKDVGLWLEEIN 16 (113)
Q Consensus 4 S~EDVa~WLeeiG 16 (113)
+.+++.+|+...|
T Consensus 37 ~~~~l~~~~~~~~ 49 (105)
T cd02977 37 TKEELKELLAKLG 49 (105)
T ss_pred CHHHHHHHHHhcC
Confidence 4445555555555
No 73
>PF03765 CRAL_TRIO_N: CRAL/TRIO, N-terminal domain; InterPro: IPR008273 This entry defines the N-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1AUA_A 3Q8G_A 3B7Q_B 3B7Z_A 3B7N_A ....
Probab=34.64 E-value=1e+02 Score=18.34 Aligned_cols=36 Identities=22% Similarity=0.326 Sum_probs=19.2
Q ss_pred HHHHHHHHhcCcchHHHHhhhcCCchhhhhcccccchHHHHHHHHH
Q 033691 6 KDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRR 51 (113)
Q Consensus 6 EDVa~WLeeiGLgqYre~Fk~N~IdG~~Li~Ltk~t~e~ilr~i~r 51 (113)
+++-+.|.+++... .|-....-...++.-+|||+|-
T Consensus 5 ~~l~~~l~~~~~~~----------~~~~~~~~~~~~d~~llRFLRA 40 (55)
T PF03765_consen 5 KQLREHLSELDEKA----------PGLWDDEKEDHDDNFLLRFLRA 40 (55)
T ss_dssp HHHHHHHHH--GGG----------THHHTTHTSS-SHHHHHHHHHH
T ss_pred HHHHHHHHHhccch----------hcccccccCCCCHHHHHHHHHH
Confidence 44555555555444 2223333444577778999997
No 74
>PF03918 CcmH: Cytochrome C biogenesis protein; InterPro: IPR005616 Members of this family include NrfF, CcmH, CycL, Ccl2.; PDB: 2KW0_A 2HL7_A.
Probab=34.62 E-value=23 Score=26.44 Aligned_cols=21 Identities=19% Similarity=0.570 Sum_probs=14.1
Q ss_pred ccchHHHHHHHHHhhhcchhHHHH
Q 033691 39 MFTTEQILRFIRRCHMKWGDFITL 62 (113)
Q Consensus 39 k~t~e~ilr~i~r~~~k~Gd~itl 62 (113)
.-|+|||++|+.. .|||+|.+
T Consensus 73 G~s~~eI~~~~v~---rYG~~Vl~ 93 (148)
T PF03918_consen 73 GKSDEEIIDYFVE---RYGEFVLY 93 (148)
T ss_dssp T--HHHHHHHHHH---HHTTT-EE
T ss_pred CCCHHHHHHHHHH---hcCcceee
Confidence 4578999888765 79999853
No 75
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=34.30 E-value=1.2e+02 Score=19.29 Aligned_cols=22 Identities=18% Similarity=0.279 Sum_probs=18.8
Q ss_pred hhcchhHHHHHHHHHHHHHHHh
Q 033691 53 HMKWGDFITLCKELRRIKVACL 74 (113)
Q Consensus 53 ~~k~Gd~itl~~El~~ikva~~ 74 (113)
.-.|.|||+-.+||..++--+.
T Consensus 47 ~~nY~~fI~as~~I~~m~~~~~ 68 (87)
T PF08700_consen 47 YENYRDFIEASDEISSMENDLS 68 (87)
T ss_pred HhhHHHHHHHHHHHHHHHHHHH
Confidence 5579999999999999987653
No 76
>PF12447 DUF3683: Protein of unknown function (DUF3683); InterPro: IPR022153 This domain family is found in bacteria, and is approximately 120 amino acids in length. The family is found in association with PF02754 from PFAM, PF01565 from PFAM, PF02913 from PFAM.
Probab=34.15 E-value=41 Score=25.32 Aligned_cols=30 Identities=23% Similarity=0.423 Sum_probs=24.5
Q ss_pred cccccchHHH-HHHHHHhhhcchhHHHHHHHHHHHHH
Q 033691 36 GMSMFTTEQI-LRFIRRCHMKWGDFITLCKELRRIKV 71 (113)
Q Consensus 36 ~Ltk~t~e~i-lr~i~r~~~k~Gd~itl~~El~~ikv 71 (113)
|-|+||+-|| +++++. +...++.|||.-++
T Consensus 10 NYTS~sDReiV~rlLG~------~~w~~L~eLR~~R~ 40 (115)
T PF12447_consen 10 NYTSFSDREIVIRLLGE------EAWRLLEELRGERR 40 (115)
T ss_pred CCCCccHHHHHHHHcCH------HHHHHHHHHHHccc
Confidence 5699999999 888887 66778999987654
No 77
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=34.03 E-value=82 Score=18.11 Aligned_cols=12 Identities=8% Similarity=0.086 Sum_probs=6.4
Q ss_pred hcchhHHHHHHH
Q 033691 54 MKWGDFITLCKE 65 (113)
Q Consensus 54 ~k~Gd~itl~~E 65 (113)
+.|.+|+.++.-
T Consensus 50 i~~~ef~~~~~~ 61 (67)
T cd00052 50 LDKEEFAIAMHL 61 (67)
T ss_pred CCHHHHHHHHHH
Confidence 555566555443
No 78
>COG4776 Rnb Exoribonuclease II [Transcription]
Probab=33.84 E-value=18 Score=33.54 Aligned_cols=44 Identities=34% Similarity=0.527 Sum_probs=34.2
Q ss_pred hhcchhHHHHHHHHHHHHHHHhhCcccccCCCCCCcchhhHhHHHhhhccccceEE
Q 033691 53 HMKWGDFITLCKELRRIKVACLKGEQKVRRPWWAPSCLSVVFVKVAKRNRQSRVVS 108 (113)
Q Consensus 53 ~~k~Gd~itl~~El~~ikva~~~~~~~~~~~~w~p~~~s~v~~~~~~~~~~~~~~~ 108 (113)
+-||||.|.- |.|| |+++|++...|. --|++++|.+.||.|.+.
T Consensus 500 IRKY~DMiNH----RLlK-avi~~~~~~kPq-------edi~v~lae~Rr~nrmaE 543 (645)
T COG4776 500 IRKYGDMINH----RLLK-AVIKGETAEKPQ-------EDITVQLAERRRLNRMAE 543 (645)
T ss_pred hhhhhhHHHH----HHHH-HHHcCCCcCCCc-------hHHHHHHHHHHHhhhhhh
Confidence 6789999862 5555 788999888743 368999999999998763
No 79
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=32.93 E-value=82 Score=22.06 Aligned_cols=43 Identities=9% Similarity=0.196 Sum_probs=26.5
Q ss_pred CCHHHHHHHHHhcCcchH----HHHhhhcCCchhhhhcccccchHHHHHHHHH
Q 033691 3 LSIKDVGLWLEEINLGGY----RQIFKENGVNGEYLEGMSMFTTEQILRFIRR 51 (113)
Q Consensus 3 WS~EDVa~WLeeiGLgqY----re~Fk~N~IdG~~Li~Ltk~t~e~ilr~i~r 51 (113)
+|.+++..||.+.|+... ...|++.+.+- ...|++++++.|..
T Consensus 37 ~s~~eL~~~l~~~g~~~l~n~~~~~~r~~~~~~------~~ls~~e~~~ll~~ 83 (113)
T cd03033 37 WTAETLRPFFGDLPVAEWFNPAAPRVKSGEVVP------EALDEEEALALMIA 83 (113)
T ss_pred CCHHHHHHHHHHcCHHHHHhcccHHHHhcCCCc------cCCCHHHHHHHHHh
Confidence 688999999998886331 23444433332 23467777776644
No 80
>PF10905 DUF2695: Protein of unknown function (DUF2695); InterPro: IPR024248 This bacterial family of proteins has no known function.
Probab=31.90 E-value=34 Score=22.27 Aligned_cols=12 Identities=42% Similarity=0.559 Sum_probs=9.9
Q ss_pred HHHHHHHHHhcC
Q 033691 5 IKDVGLWLEEIN 16 (113)
Q Consensus 5 ~EDVa~WLeeiG 16 (113)
.++|-+||++.|
T Consensus 32 ~~~vl~~l~~nG 43 (53)
T PF10905_consen 32 WEDVLEWLRENG 43 (53)
T ss_pred HHHHHHHHHHcC
Confidence 488999998876
No 81
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=31.85 E-value=1.3e+02 Score=23.95 Aligned_cols=63 Identities=19% Similarity=0.296 Sum_probs=40.5
Q ss_pred HHHHHHHHhcCcchHHHHhhhcC---Cchhhhhcc--cccchHHHHHHHHHh---------hhcch------hHHHHHHH
Q 033691 6 KDVGLWLEEINLGGYRQIFKENG---VNGEYLEGM--SMFTTEQILRFIRRC---------HMKWG------DFITLCKE 65 (113)
Q Consensus 6 EDVa~WLeeiGLgqYre~Fk~N~---IdG~~Li~L--tk~t~e~ilr~i~r~---------~~k~G------d~itl~~E 65 (113)
+|+..-|.+.|+..|-. |+ .+-+-...+ .+.|.++.++-|+.+ ++=+| |++.++..
T Consensus 143 ~e~l~~Lk~aG~~~~~~----~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~Gi~v~~~~iiGlgEt~ed~~~~l~~ 218 (340)
T TIGR03699 143 REVLERLKEAGLDSIPG----GGAEILSDRVRKIISPKKISSEEWLEVMETAHKLGLPTTATMMFGHVETLEDRIEHLER 218 (340)
T ss_pred HHHHHHHHHcCCCcCCC----CcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccceeEeeCCCCHHHHHHHHHH
Confidence 67777777888776621 10 111222333 256888887777666 44456 89999999
Q ss_pred HHHHHHH
Q 033691 66 LRRIKVA 72 (113)
Q Consensus 66 l~~ikva 72 (113)
|+.+++-
T Consensus 219 l~~l~~~ 225 (340)
T TIGR03699 219 IRELQDK 225 (340)
T ss_pred HHHhchh
Confidence 9999874
No 82
>PF15013 CCSMST1: CCSMST1 family
Probab=31.73 E-value=21 Score=24.89 Aligned_cols=27 Identities=26% Similarity=0.528 Sum_probs=20.4
Q ss_pred HHHHHHhhCcccccCCCCCCcchhhHh
Q 033691 68 RIKVACLKGEQKVRRPWWAPSCLSVVF 94 (113)
Q Consensus 68 ~ikva~~~~~~~~~~~~w~p~~~s~v~ 94 (113)
+.+|.+-.|-+.-|.|||-|-.+|.-+
T Consensus 14 ~w~v~~s~~~~~~~~PWyq~~~is~sl 40 (77)
T PF15013_consen 14 RWTVEHSRGGKQQRMPWYQVYPISLSL 40 (77)
T ss_pred ccccccccCCCCCCCcceeeehhHHHH
Confidence 457777777777778999998877543
No 83
>PF12512 DUF3717: Protein of unknown function (DUF3717) ; InterPro: IPR022191 This family of proteins is found in bacteria. Proteins in this family are typically between 75 and 117 amino acids in length. There is a conserved AIN sequence motif. There are two completely conserved residues (L and Y) that may be functionally important.
Probab=31.49 E-value=39 Score=23.25 Aligned_cols=28 Identities=29% Similarity=0.471 Sum_probs=23.8
Q ss_pred hHHHHHHHHHhhhcchhHHHHHHHHHHH
Q 033691 42 TEQILRFIRRCHMKWGDFITLCKELRRI 69 (113)
Q Consensus 42 ~e~ilr~i~r~~~k~Gd~itl~~El~~i 69 (113)
.|+++.|-|.-.-+-||-++||.|.+.|
T Consensus 9 IE~AIN~WR~r~Ps~~d~~~Lcpea~aL 36 (71)
T PF12512_consen 9 IEAAINYWRARSPSSGDELALCPEARAL 36 (71)
T ss_pred HHHHHHHHHhcCCCCCcccccCHHHHHH
Confidence 3566888888888889999999999876
No 84
>PF00165 HTH_AraC: Bacterial regulatory helix-turn-helix proteins, AraC family; PDB: 1WPK_A 1ZGW_A 1U8B_A.
Probab=31.34 E-value=40 Score=19.08 Aligned_cols=25 Identities=16% Similarity=0.279 Sum_probs=14.2
Q ss_pred CCCHHHHHHHHHhcCcchHHHHhhhc
Q 033691 2 YLSIKDVGLWLEEINLGGYRQIFKEN 27 (113)
Q Consensus 2 ~WS~EDVa~WLeeiGLgqYre~Fk~N 27 (113)
.|+.+|||+-+-= .-..++..|++.
T Consensus 8 ~~~l~~iA~~~g~-S~~~f~r~Fk~~ 32 (42)
T PF00165_consen 8 KLTLEDIAEQAGF-SPSYFSRLFKKE 32 (42)
T ss_dssp S--HHHHHHHHTS--HHHHHHHHHHH
T ss_pred CCCHHHHHHHHCC-CHHHHHHHHHHH
Confidence 5888999875533 444566777653
No 85
>TIGR02923 AhaC ATP synthase A1, C subunit. The A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The C subunit is part of the hydrophilic A1 "stalk" complex (AhaABCDEFG) which is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex.
Probab=31.24 E-value=1.5e+02 Score=23.07 Aligned_cols=34 Identities=12% Similarity=0.134 Sum_probs=24.2
Q ss_pred CHHHHHHHHHhcCcchHHHHhhhcCCchhhhhcc
Q 033691 4 SIKDVGLWLEEINLGGYRQIFKENGVNGEYLEGM 37 (113)
Q Consensus 4 S~EDVa~WLeeiGLgqYre~Fk~N~IdG~~Li~L 37 (113)
|.+|+...|++-+++.+.+-+.++..+...++..
T Consensus 33 s~~e~~~~L~~t~Y~~~l~~~~~~~~~~~~iE~~ 66 (343)
T TIGR02923 33 GTDEIVRFLEETDYKKELDELGSKSYGVDLIEHA 66 (343)
T ss_pred CHHHHHHHhcCCChHHHHHHhhhccCCHHHHHHH
Confidence 5788888998888888776666666665555443
No 86
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=31.18 E-value=84 Score=21.69 Aligned_cols=58 Identities=19% Similarity=0.272 Sum_probs=41.1
Q ss_pred HhcCcchHHHH-----hhhcCCchhhhhcccccchHHHHHHHHHhhhcch---hHHHHHHHHHHHHHH
Q 033691 13 EEINLGGYRQI-----FKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWG---DFITLCKELRRIKVA 72 (113)
Q Consensus 13 eeiGLgqYre~-----Fk~N~IdG~~Li~Ltk~t~e~ilr~i~r~~~k~G---d~itl~~El~~ikva 72 (113)
+++++.+.++. |++|.|+.-+..+-.. .||+.+-++..-.+-| .+=+|++-|+.++..
T Consensus 15 ~~V~~~~Wk~laR~LGLse~~I~~i~~~~~~~--~eq~~qmL~~W~~~~G~~At~~~L~~aL~~~~~~ 80 (96)
T cd08315 15 KEVPFDSWNRLMRQLGLSENEIDVAKANERVT--REQLYQMLLTWVNKTGRKASVNTLLDALEAIGLR 80 (96)
T ss_pred HHCCHHHHHHHHHHcCCCHHHHHHHHHHCCCC--HHHHHHHHHHHHHhhCCCcHHHHHHHHHHHcccc
Confidence 44455555554 5778888888887654 8999888888877776 556788888877543
No 87
>PF10653 Phage-A118_gp45: Protein gp45 of Bacteriophage A118; InterPro: IPR018915 The proteins in this entry represents Gp45 in Listeria phage A118 (Bacteriophage A118) and related proteins; Gp45 is thought to have a function in the phage tail-fibre system.
Probab=29.89 E-value=37 Score=23.13 Aligned_cols=20 Identities=25% Similarity=0.629 Sum_probs=17.4
Q ss_pred CHHHHHHHHHhcCcchHHHH
Q 033691 4 SIKDVGLWLEEINLGGYRQI 23 (113)
Q Consensus 4 S~EDVa~WLeeiGLgqYre~ 23 (113)
-||..++.+|++.|.+|.+.
T Consensus 41 gcekm~dyieelklkgyeev 60 (62)
T PF10653_consen 41 GCEKMTDYIEELKLKGYEEV 60 (62)
T ss_pred hhHHHHHHHHHHhhcchhhh
Confidence 37889999999999999874
No 88
>cd08316 Death_FAS_TNFRSF6 Death domain of FAS or TNF receptor superfamily member 6. Death Domain (DD) found in the FS7-associated cell surface antigen (FAS). FAS, also known as TNFRSF6 (TNF receptor superfamily member 6), APT1, CD95, FAS1, or APO-1, together with FADD (Fas-associating via Death Domain) and caspase 8, is an integral part of the death inducing signalling complex (DISC), which plays an important role in the induction of apoptosis and is activated by binding of the ligand FasL to FAS. FAS also plays a critical role in self-tolerance by eliminating cell types (autoreactive T and B cells) that contribute to autoimmunity. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in sign
Probab=29.70 E-value=1.4e+02 Score=21.03 Aligned_cols=60 Identities=22% Similarity=0.399 Sum_probs=42.0
Q ss_pred HhcCcchHHHHhhhcCCchhhhhccc----ccchHHHHHHHHHhhhcch---hHHHHHHHHHHHHHH
Q 033691 13 EEINLGGYRQIFKENGVNGEYLEGMS----MFTTEQILRFIRRCHMKWG---DFITLCKELRRIKVA 72 (113)
Q Consensus 13 eeiGLgqYre~Fk~N~IdG~~Li~Lt----k~t~e~ilr~i~r~~~k~G---d~itl~~El~~ikva 72 (113)
+++|..+.+++++.+++.-..+.... .=+.||..+-++..+++-| .+-+|++-||.++..
T Consensus 16 ~~~~~~~wK~faR~lglse~~Id~I~~~~~~d~~Eq~~qmL~~W~~~~G~~a~~~~Li~aLr~~~l~ 82 (97)
T cd08316 16 DVMTLKDVKKFVRKSGLSEPKIDEIKLDNPQDTAEQKVQLLRAWYQSHGKTGAYRTLIKTLRKAKLC 82 (97)
T ss_pred HHcCHHHHHHHHHHcCCCHHHHHHHHHcCCCChHHHHHHHHHHHHHHhCCCchHHHHHHHHHHccch
Confidence 46688888888777666665555443 1146999998988877655 677788888877643
No 89
>PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=29.65 E-value=98 Score=25.24 Aligned_cols=47 Identities=28% Similarity=0.446 Sum_probs=31.4
Q ss_pred CCCHHHHHHHHHhcCcchHHHHhhhcCCchhhhhcccccchHHHHHHHHHh-hhcchhHHHHHHHHHH
Q 033691 2 YLSIKDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRC-HMKWGDFITLCKELRR 68 (113)
Q Consensus 2 ~WS~EDVa~WLeeiGLgqYre~Fk~N~IdG~~Li~Ltk~t~e~ilr~i~r~-~~k~Gd~itl~~El~~ 68 (113)
..+.+++.+|+.+.|++.|| ..||.++|.+- ...|-+.-.|=+++|.
T Consensus 6 ~~~~~~~~~~~~~~g~~~~r--------------------~~qi~~~~~~~~~~~~~~~~~~~~~~r~ 53 (343)
T PRK14469 6 DLSYEELVSEITELGLEKYR--------------------ADQILDWIYKKKVFNFDEMTNLSKDHRA 53 (343)
T ss_pred cCCHHHHHHHHHHcCCCchH--------------------HHHHHHHHHhcCCCCHHHhccccHHHHH
Confidence 45778899999999998887 35666666543 2345555555555553
No 90
>PRK10026 arsenate reductase; Provisional
Probab=29.23 E-value=1.3e+02 Score=22.35 Aligned_cols=49 Identities=16% Similarity=0.245 Sum_probs=31.9
Q ss_pred CCCHHHHHHHHHhcCcchHHHHhhhcCCchhhhhc-ccccchHHHHHHHHH
Q 033691 2 YLSIKDVGLWLEEINLGGYRQIFKENGVNGEYLEG-MSMFTTEQILRFIRR 51 (113)
Q Consensus 2 ~WS~EDVa~WLeeiGLgqYre~Fk~N~IdG~~Li~-Ltk~t~e~ilr~i~r 51 (113)
.+|.+++..||...|+ +-.+.|..++-.=++|-- ....|.++++..|..
T Consensus 38 ppt~~eL~~~l~~~g~-~~~~lint~~~~yr~L~~~~~~ls~~e~l~ll~~ 87 (141)
T PRK10026 38 PPTRDELVKLIADMGI-SVRALLRKNVEPYEELGLAEDKFTDDQLIDFMLQ 87 (141)
T ss_pred CcCHHHHHHHHHhCCC-CHHHHHHcCCchHHHcCCCccCCCHHHHHHHHHh
Confidence 3789999999999997 355555555444443321 123577888877654
No 91
>PF05452 Clavanin: Clavanin; InterPro: IPR008453 This family consists of clavanin proteins from the haemocytes of the invertebrate Styela clava (Sea squirt), a solitary tunicate. The family is made up of four alpha-helical antimicrobial peptides, clavanins A, B, C and D. The tunicate peptides resemble magainins in size, primary sequence and antibacterial activity. Synthetic clavanin A displays comparable antimicrobial activity to magainins and cecropins. The presence of alpha-helical antimicrobial peptides in the haemocytes of a urochordate suggests that such peptides are primeval effectors of innate immunity in the vertebrate lineage [].; GO: 0005576 extracellular region
Probab=28.96 E-value=51 Score=23.48 Aligned_cols=33 Identities=30% Similarity=0.541 Sum_probs=24.4
Q ss_pred CCchhhhhcccccchHHHHHHHHHhhhcchhHHH
Q 033691 28 GVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFIT 61 (113)
Q Consensus 28 ~IdG~~Li~Ltk~t~e~ilr~i~r~~~k~Gd~it 61 (113)
+||-..|+. +|-..|..+|||++.+--.|+||-
T Consensus 14 gi~akslee-~k~~eekvf~flG~IIHhVGnfVh 46 (80)
T PF05452_consen 14 GINAKSLEE-SKSDEEKVFRFLGSIIHHVGNFVH 46 (80)
T ss_pred CcCcchhhh-hhhhHHHHHHHHHHHHHhhhhhhh
Confidence 456555553 456677789999999888898874
No 92
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=28.60 E-value=30 Score=28.50 Aligned_cols=34 Identities=35% Similarity=0.461 Sum_probs=28.2
Q ss_pred chhHHHHH-----HHHHHHHHHHhhCcccccCCCCCCcchhhHh
Q 033691 56 WGDFITLC-----KELRRIKVACLKGEQKVRRPWWAPSCLSVVF 94 (113)
Q Consensus 56 ~Gd~itl~-----~El~~ikva~~~~~~~~~~~~w~p~~~s~v~ 94 (113)
-||.+|+. --|+.||||+.. -+.|=.|..++.|.
T Consensus 149 ~Gd~lt~aDcsLlPKL~~i~va~k~-----yk~~~IP~~lt~V~ 187 (221)
T KOG1422|consen 149 DGDKLTLADCSLLPKLHHIKVAAKH-----YKNFEIPASLTGVW 187 (221)
T ss_pred cCCeeeeehhhhchhHHHHHHHHHH-----hcCCCCchhhhHHH
Confidence 38998864 579999999987 56788999999874
No 93
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=27.96 E-value=56 Score=24.74 Aligned_cols=28 Identities=11% Similarity=0.055 Sum_probs=23.6
Q ss_pred CHHHHHHHHHhcCcchHHHHhhhcCCch
Q 033691 4 SIKDVGLWLEEINLGGYRQIFKENGVNG 31 (113)
Q Consensus 4 S~EDVa~WLeeiGLgqYre~Fk~N~IdG 31 (113)
|+|+..+||++-||.+-...|+.-++.|
T Consensus 210 ~~~~~~~~L~~aGF~~v~~~~~~~~f~~ 237 (247)
T PRK15451 210 SVETHKARLHKAGFEHSELWFQCFNFGS 237 (247)
T ss_pred CHHHHHHHHHHcCchhHHHHHHHHhHHH
Confidence 6788899999999999888888766655
No 94
>PRK02090 phosphoadenosine phosphosulfate reductase; Provisional
Probab=27.48 E-value=46 Score=25.56 Aligned_cols=18 Identities=28% Similarity=0.259 Sum_probs=15.9
Q ss_pred CCCCHHHHHHHHHhcCcc
Q 033691 1 MYLSIKDVGLWLEEINLG 18 (113)
Q Consensus 1 ~~WS~EDVa~WLeeiGLg 18 (113)
++||.+||-++|.+.|++
T Consensus 176 ~~Wt~~dV~~Yi~~~~lp 193 (241)
T PRK02090 176 ADWTNEDVWAYLKEHDLP 193 (241)
T ss_pred hhCCHHHHHHHHHHcCCC
Confidence 479999999999999987
No 95
>PF12060 DUF3541: Domain of unknown function (DUF3541); InterPro: IPR021928 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is about 230 amino acids in length.
Probab=27.42 E-value=32 Score=28.46 Aligned_cols=33 Identities=9% Similarity=0.033 Sum_probs=22.9
Q ss_pred HHHHhcCcchHHHHhhhcCCchhhhhcccccch
Q 033691 10 LWLEEINLGGYRQIFKENGVNGEYLEGMSMFTT 42 (113)
Q Consensus 10 ~WLeeiGLgqYre~Fk~N~IdG~~Li~Ltk~t~ 42 (113)
=||.++|-++|++.|++..+.-..=..=.+.|.
T Consensus 163 YWlrQLGe~D~v~~f~~AFr~~YPd~~D~~Ls~ 195 (227)
T PF12060_consen 163 YWLRQLGEQDVVEEFIQAFRATYPDSKDAKLSK 195 (227)
T ss_pred HHHHHhCchhHHHHHHHHHHHhCCChhhhhccH
Confidence 499999999999999887665443333333333
No 96
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=27.00 E-value=66 Score=21.54 Aligned_cols=36 Identities=22% Similarity=0.378 Sum_probs=22.0
Q ss_pred cchHHHHhhhcCCchhhhhcccccchHHHHHHHHHhh
Q 033691 17 LGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCH 53 (113)
Q Consensus 17 LgqYre~Fk~N~IdG~~Li~Ltk~t~e~ilr~i~r~~ 53 (113)
+++..+.-++++|| +-.+.|..-+.++|.+.+.+|.
T Consensus 130 ~~~l~~~~~~~~id-~v~ial~~~~~~~i~~ii~~~~ 165 (175)
T PF13727_consen 130 LDDLPELVREHDID-EVIIALPWSEEEQIKRIIEELE 165 (175)
T ss_dssp GGGHHHHHHHHT---EEEE--TTS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCC-EEEEEcCccCHHHHHHHHHHHH
Confidence 56667777777777 5667777777777777777763
No 97
>PF07962 Swi3: Replication Fork Protection Component Swi3; InterPro: IPR012923 Replication fork pausing is required to initiate recombination events. More specifically, Swi1 is required for recombination near the mat1 locus. Swi3 has been found to co-purify with Swi1. Together they define a fork protection complex that coordinates leading- and lagging-strand synthesis and stabilises stalled replication forks []. This complex is required for accurate replication, fork protection and replication checkpoint signalling [, ].; GO: 0006974 response to DNA damage stimulus, 0007049 cell cycle, 0048478 replication fork protection, 0005634 nucleus
Probab=26.12 E-value=97 Score=20.97 Aligned_cols=50 Identities=26% Similarity=0.402 Sum_probs=34.9
Q ss_pred HHhcCcchHHHHhhhcCCc--hhhhhcccccchHHHHHHHHHh------hhcchhHHHHHHHH
Q 033691 12 LEEINLGGYRQIFKENGVN--GEYLEGMSMFTTEQILRFIRRC------HMKWGDFITLCKEL 66 (113)
Q Consensus 12 LeeiGLgqYre~Fk~N~Id--G~~Li~Ltk~t~e~ilr~i~r~------~~k~Gd~itl~~El 66 (113)
+.+-|++..+..|+.=.+. |.+..+| .-+|.+.... .++|.|||..|.=|
T Consensus 8 ~~~~Glp~l~~~~k~~k~kgkghE~~dL-----~~ll~~Yq~W~h~LfPk~~F~d~i~~vE~L 65 (83)
T PF07962_consen 8 LSPKGLPYLRKNFKKFKFKGKGHEYEDL-----RRLLQFYQLWAHRLFPKASFEDFIERVEKL 65 (83)
T ss_pred cCCCCHHHHHHHHHHcCcCCCCCHHHHH-----HHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 3457999999999777776 5666555 3345544443 47999999988765
No 98
>KOG3004 consensus Meiotic chromosome segregation protein [Cell cycle control, cell division, chromosome partitioning]
Probab=26.05 E-value=95 Score=26.70 Aligned_cols=60 Identities=27% Similarity=0.440 Sum_probs=42.8
Q ss_pred HHhcCcchHHHHhhhcCCchhhhhcccccchHHHHHHHHHh------hhcchhHHHHHHHH---HHHHHHHh
Q 033691 12 LEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRC------HMKWGDFITLCKEL---RRIKVACL 74 (113)
Q Consensus 12 LeeiGLgqYre~Fk~N~IdG~~Li~Ltk~t~e~ilr~i~r~------~~k~Gd~itl~~El---~~ikva~~ 74 (113)
+-+-|++..|+||+.=-+.|.. =+...++++||+.... -+||-|||.-|.=| |.+||-.+
T Consensus 71 ~s~~Gip~lR~~~k~~k~kgKg---~e~~dL~~llr~y~~WgH~lfPk~kf~D~i~~~etLGk~r~vkv~~~ 139 (305)
T KOG3004|consen 71 ISEKGIPALRDCFKKAKFKGKG---HEYIDLKELLRSYQHWGHELFPKAKFDDFINRVETLGKKREVKVDLL 139 (305)
T ss_pred cCccCchHHHHHHhhcCcCCCC---CcccCHHHHHHHHHHHHHhhcccchhHHHHHHHHhhccccchhhhhh
Confidence 4567999999999999999986 3455667777766543 47888888777655 34455433
No 99
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=25.97 E-value=99 Score=25.71 Aligned_cols=46 Identities=24% Similarity=0.572 Sum_probs=30.5
Q ss_pred CCHHHHHHHHHhcCcchHHHHhhhcCCchhhhhcccccchHHHHHHHHHhh-hcchhHHHHHHHHHH
Q 033691 3 LSIKDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCH-MKWGDFITLCKELRR 68 (113)
Q Consensus 3 WS~EDVa~WLeeiGLgqYre~Fk~N~IdG~~Li~Ltk~t~e~ilr~i~r~~-~k~Gd~itl~~El~~ 68 (113)
-+.++..+|+.++|++.||. .||.++|.+-+ ..|-+.-.|=+++|.
T Consensus 12 ~~~~~l~~~~~~~g~~~~r~--------------------~qi~~~~~~~~~~~~~~m~~l~~~~r~ 58 (355)
T TIGR00048 12 LTLQELRQWLKDLGEKPFRA--------------------KQIYKWLYHKGKDSFDDMTNLSKDLRE 58 (355)
T ss_pred CCHHHHHHHHHHcCCCchhH--------------------HHHHHHHHHcCCCCHHHccccCHHHHH
Confidence 35678888888888887774 57777776543 335555556666653
No 100
>KOG0871 consensus Class 2 transcription repressor NC2, beta subunit (Dr1) [Transcription]
Probab=25.13 E-value=59 Score=25.65 Aligned_cols=20 Identities=25% Similarity=0.288 Sum_probs=17.3
Q ss_pred CHHHHHHHHHhcCcchHHHH
Q 033691 4 SIKDVGLWLEEINLGGYRQI 23 (113)
Q Consensus 4 S~EDVa~WLeeiGLgqYre~ 23 (113)
++|-|-.=|+++||++|.+.
T Consensus 68 a~EHV~KALe~LgF~eYiee 87 (156)
T KOG0871|consen 68 APEHVIKALENLGFGEYIEE 87 (156)
T ss_pred CHHHHHHHHHHcchHHHHHH
Confidence 57888999999999999864
No 101
>PF05372 Delta_lysin: Delta lysin family; InterPro: IPR008034 Delta-lysin is a 26 amino acid, hemolytic peptide toxin secreted by Staphylococcus aureus. It is thought that delta-toxin forms an amphipathic helix upon binding to lipid bilayers []. The precise mode of action of delta-lysis is unclear.; GO: 0019836 hemolysis by symbiont of host erythrocytes, 0005576 extracellular region; PDB: 2KAM_A 2DTB_A 1DTC_A.
Probab=25.03 E-value=45 Score=19.33 Aligned_cols=13 Identities=38% Similarity=0.552 Sum_probs=10.1
Q ss_pred hcchhHHHHHHHH
Q 033691 54 MKWGDFITLCKEL 66 (113)
Q Consensus 54 ~k~Gd~itl~~El 66 (113)
-.+||||+++-|-
T Consensus 7 sTIgdfvKlI~~T 19 (25)
T PF05372_consen 7 STIGDFVKLIIET 19 (25)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4579999998763
No 102
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.89 E-value=47 Score=30.42 Aligned_cols=23 Identities=43% Similarity=0.664 Sum_probs=19.7
Q ss_pred hhcccccchHHHHHHHHHhhhcc
Q 033691 34 LEGMSMFTTEQILRFIRRCHMKW 56 (113)
Q Consensus 34 Li~Ltk~t~e~ilr~i~r~~~k~ 56 (113)
...|+.|||||+.++.-||.-++
T Consensus 22 ~~~lseFTteqvveavvrcL~~I 44 (521)
T KOG1937|consen 22 FEDLSEFTTEQVVEAVVRCLWKI 44 (521)
T ss_pred chhHhhcCHHHHHHHHHHHHHhc
Confidence 67899999999999999995443
No 103
>PF13592 HTH_33: Winged helix-turn helix
Probab=24.89 E-value=56 Score=20.26 Aligned_cols=34 Identities=15% Similarity=0.502 Sum_probs=22.8
Q ss_pred CCCHHHHHHHHHhc-CcchHHHHhhhcCCchhhhhcccccchHHHHHHHHHhhhcc
Q 033691 2 YLSIKDVGLWLEEI-NLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKW 56 (113)
Q Consensus 2 ~WS~EDVa~WLeei-GLgqYre~Fk~N~IdG~~Li~Ltk~t~e~ilr~i~r~~~k~ 56 (113)
.||..+|++||++. |- ++|...+-+.++|+-++|
T Consensus 4 ~wt~~~i~~~I~~~fgv---------------------~ys~~~v~~lL~r~G~s~ 38 (60)
T PF13592_consen 4 RWTLKEIAAYIEEEFGV---------------------KYSPSGVYRLLKRLGFSY 38 (60)
T ss_pred cccHHHHHHHHHHHHCC---------------------EEcHHHHHHHHHHcCCcc
Confidence 59999999999864 31 235666677777755443
No 104
>TIGR02055 APS_reductase thioredoxin-dependent adenylylsulfate APS reductase. This model describes recently identified adenosine 5'-phosphosulfate (APS) reductase activity found in sulfate-assimilatory prokaryotes, thus separating it from the traditionally described phosphoadenosine 5'-phosphosulfate (PAPS) reductases found in bacteria and fungi. Homologous to PAPS reductase in enterobacteria, cyanobacteria, and yeast, APS reductase here clusters with, and demonstrates greater homology to plant APS reductase. Additionally, the presence of two conserved C-terminal motifs (CCXXRKXXPL & SXGCXXCT) distinguishes APS substrate specificity and serves as a FeS cluster.
Probab=24.54 E-value=61 Score=24.15 Aligned_cols=19 Identities=16% Similarity=0.074 Sum_probs=15.8
Q ss_pred CCCCHHHHHHHHHhcCcch
Q 033691 1 MYLSIKDVGLWLEEINLGG 19 (113)
Q Consensus 1 ~~WS~EDVa~WLeeiGLgq 19 (113)
++||.+||-+.|.+.|++-
T Consensus 130 ~~Wt~~dVw~Yi~~~~lp~ 148 (191)
T TIGR02055 130 ADWTSEDVWEYIADNELPY 148 (191)
T ss_pred ccCCHHHHHHHHHHcCCCC
Confidence 4799999999999888853
No 105
>KOG3789 consensus Nitrogen permease regulator NLRG/NPR2 [Inorganic ion transport and metabolism]
Probab=24.45 E-value=82 Score=28.03 Aligned_cols=35 Identities=29% Similarity=0.501 Sum_probs=27.4
Q ss_pred HHHHHHHhcCcchHHHHhhhcCCchhhhhcccccchHHHHHHHHHhh
Q 033691 7 DVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCH 53 (113)
Q Consensus 7 DVa~WLeeiGLgqYre~Fk~N~IdG~~Li~Ltk~t~e~ilr~i~r~~ 53 (113)
.|.+|.+ +++=..|+||-|+|++.+. +-|||||||
T Consensus 309 tlk~w~~-------~~~~~~~~iDeRRlI~FGl-----~k~~Irr~~ 343 (396)
T KOG3789|consen 309 TLKDWAD-------REKPQSMGIDERRLIQFGL-----HKRFIRRLH 343 (396)
T ss_pred cHHHHHH-------hcchhhcCccHHHHhhhhh-----HHHHHHHHh
Confidence 4678887 5566789999999998743 468999986
No 106
>cd08310 Death_NFkB-like Death domain of Nuclear Factor-KappaB precursor proteins. Death Domain (DD) of Nuclear Factor-KappaB (NF-kB) precursor proteins. The NF-kB family of transcription factors play a central role in cardiovascular growth, stress response, and inflammation by controlling the expression of a network of different genes. There are five NF-kB proteins, all containing an N-terminal REL Homology Domain (RHD). Two of these, NF-kB1 and NF-kB2 are produced from the processing of the precursor proteins p105 and p100, respectively. In addition to RHD, p105 and p100 contain ANK repeats and a C-terminal DD. NF-kBs are regulated by the Inhibitor of NF-kB (IkB) Kinase (IKK) complex through classical and non-canonical pathways, which differ in the IKK subunits involved and downstream targets. IKKs facilitate the release of NF-kB dimers from an inactive state, allowing them to migrate to the nucleus where they regulate gene transcription. The precursor proteins p105 and p100 function
Probab=24.35 E-value=1.8e+02 Score=19.18 Aligned_cols=50 Identities=12% Similarity=0.090 Sum_probs=34.6
Q ss_pred HhcCcchHHHHhhhcCCchhhhhcccccchHHHHHHHHHhhhcchhHHHHHHHHHHHHHHH
Q 033691 13 EEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKVAC 73 (113)
Q Consensus 13 eeiGLgqYre~Fk~N~IdG~~Li~Ltk~t~e~ilr~i~r~~~k~Gd~itl~~El~~ikva~ 73 (113)
+++||+.|...|+. +.-.+..+|+.-.-.+...|+-+..+.|+-+--++.
T Consensus 20 ~~L~~~~~i~~~~~-----------~~sPt~~LL~~we~~~~tv~~L~~~L~~mgr~dav~ 69 (72)
T cd08310 20 QLLDLGHLVNFIRL-----------SPSPTKMLLDYFEMQGGTLERLRDALEVLGETEAVE 69 (72)
T ss_pred HHcCcHHHHHHHhc-----------CCCHHHHHHHHHHhCCCCHHHHHHHHHHcCcHHHHH
Confidence 56799988888875 345567777776665666777777777766655443
No 107
>PF01418 HTH_6: Helix-turn-helix domain, rpiR family; InterPro: IPR000281 This domain contains a helix-turn-helix motif []. Every member of this family is N-terminal to a SIS domain IPR001347 from INTERPRO. Members of this family are probably regulators of genes involved in phosphosugar metobolism.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2O3F_B 3IWF_B.
Probab=24.24 E-value=80 Score=20.28 Aligned_cols=19 Identities=11% Similarity=0.413 Sum_probs=14.6
Q ss_pred CHHHHHHHHHhcCcchHHH
Q 033691 4 SIKDVGLWLEEINLGGYRQ 22 (113)
Q Consensus 4 S~EDVa~WLeeiGLgqYre 22 (113)
|.-.|......+||.+|.+
T Consensus 47 S~sti~Rf~kkLG~~gf~e 65 (77)
T PF01418_consen 47 SPSTIVRFCKKLGFSGFKE 65 (77)
T ss_dssp -HHHHHHHHHHCTTTCHHH
T ss_pred CHHHHHHHHHHhCCCCHHH
Confidence 4456777888999999987
No 108
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=23.91 E-value=1.2e+02 Score=25.55 Aligned_cols=46 Identities=22% Similarity=0.393 Sum_probs=32.3
Q ss_pred CCHHHHHHHHHhcCcchHHHHhhhcCCchhhhhcccccchHHHHHHHHHh-hhcchhHHHHHHHHHH
Q 033691 3 LSIKDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRC-HMKWGDFITLCKELRR 68 (113)
Q Consensus 3 WS~EDVa~WLeeiGLgqYre~Fk~N~IdG~~Li~Ltk~t~e~ilr~i~r~-~~k~Gd~itl~~El~~ 68 (113)
-+.+++.+|+.++|.+.|| -.||.++|.+- ...|.+.-.|=+++|.
T Consensus 23 ~~~~el~~~~~~~g~~~~r--------------------~~qi~~w~y~~~~~~~~~m~~l~~~~r~ 69 (368)
T PRK14456 23 LRRQELTELLARLGEPAWR--------------------AAQLHQWLFSHRALSFEEMTTLSKPLRR 69 (368)
T ss_pred CCHHHHHHHHHHcCCCchH--------------------HHHHHHHHHHcCCCCHHHhccccHHHHH
Confidence 3567888888888887777 46777777654 3556666666666664
No 109
>PF08439 Peptidase_M3_N: Oligopeptidase F; InterPro: IPR013647 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found towards the N terminus of metallopeptidases belonging to MEROPS peptidase subfamily M3B (oligopeptidase F, clan MA). An example protein is Lactococcus lactisPepF []. The function of this N-terminal domain is unknown.; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding; PDB: 2QR4_B 3CE2_A.
Probab=23.72 E-value=1.1e+02 Score=19.06 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=18.0
Q ss_pred CHHHHHHHH-HhcCcchHHHHhhh
Q 033691 4 SIKDVGLWL-EEINLGGYRQIFKE 26 (113)
Q Consensus 4 S~EDVa~WL-eeiGLgqYre~Fk~ 26 (113)
+.+.+..|+ ++-.++.|+-.+++
T Consensus 6 ~e~~l~~~~~~~~~l~~y~~~l~~ 29 (70)
T PF08439_consen 6 PEEKLESLIKEDPELKEYRFYLEE 29 (70)
T ss_dssp -HHHHHHHHHH-CCCGGGHHHHHH
T ss_pred CHHHHHHHHhcCccHHHHHHHHHH
Confidence 568899999 48899999988865
No 110
>PRK13605 endoribonuclease SymE; Provisional
Probab=23.47 E-value=34 Score=25.57 Aligned_cols=10 Identities=40% Similarity=0.963 Sum_probs=8.7
Q ss_pred HHHHHhcCcc
Q 033691 9 GLWLEEINLG 18 (113)
Q Consensus 9 a~WLeeiGLg 18 (113)
|.||++.||.
T Consensus 44 G~WLeeAGF~ 53 (113)
T PRK13605 44 GQWLEAAGFA 53 (113)
T ss_pred chhHHhhCCC
Confidence 6899999985
No 111
>PF13354 Beta-lactamase2: Beta-lactamase enzyme family; PDB: 1G6A_A 1G68_A 3NIA_A 3NI9_B 1BUL_A 1BUE_A 4EUZ_A 4EV4_A 4EQI_A 1O7E_B ....
Probab=23.41 E-value=87 Score=22.29 Aligned_cols=50 Identities=14% Similarity=0.073 Sum_probs=30.1
Q ss_pred HHHHHHHHHhcCcchHHHHhhhcCCchhhhhcccccchHHHHHHHHHhhh
Q 033691 5 IKDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHM 54 (113)
Q Consensus 5 ~EDVa~WLeeiGLgqYre~Fk~N~IdG~~Li~Ltk~t~e~ilr~i~r~~~ 54 (113)
.+.|..|+.+.|+.+.+-....-......--..+..|.++..+++.++..
T Consensus 89 ~~~v~~~~~~~G~~~t~~~~~~~~~~~~~~~~~n~~T~~d~~~ll~~l~~ 138 (197)
T PF13354_consen 89 PDAVNAWLKRLGLTDTRINRPLPDPEAIDGGYRNTTTARDMARLLEQLYQ 138 (197)
T ss_dssp HHHHHHHHHHTTHSSGBGGSCTTGGGGCTTCSTTEEEHHHHHHHHHHHHT
T ss_pred ccchhhhHHHcCCccEEeccccccccccccCCCCcCCHHHHHHHHHHHhh
Confidence 46778888888877654222111111122234577888999888888644
No 112
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=23.36 E-value=64 Score=19.21 Aligned_cols=18 Identities=17% Similarity=0.508 Sum_probs=13.8
Q ss_pred chHHHHHHHHHhhhcchhHH
Q 033691 41 TTEQILRFIRRCHMKWGDFI 60 (113)
Q Consensus 41 t~e~ilr~i~r~~~k~Gd~i 60 (113)
|+|+.++||.. ++|+|-+
T Consensus 2 ~e~~c~~~l~~--~RW~~g~ 19 (46)
T PF12760_consen 2 DEEACREYLEE--IRWPDGF 19 (46)
T ss_pred CHHHHHHHHHH--hcCCCCC
Confidence 46777899988 8888753
No 113
>COG0649 NuoD NADH:ubiquinone oxidoreductase 49 kD subunit 7 [Energy production and conversion]
Probab=23.22 E-value=71 Score=28.32 Aligned_cols=44 Identities=20% Similarity=0.461 Sum_probs=39.2
Q ss_pred HHHHHHHHHhc--CcchHHHHhhhcCCchhhhhcccccchHHHHHH
Q 033691 5 IKDVGLWLEEI--NLGGYRQIFKENGVNGEYLEGMSMFTTEQILRF 48 (113)
Q Consensus 5 ~EDVa~WLeei--GLgqYre~Fk~N~IdG~~Li~Ltk~t~e~ilr~ 48 (113)
.|.+.+||+.. .+.+|...|.+|-|==..+....-+|.|+++.+
T Consensus 176 ~e~i~~f~d~~~~~l~eye~l~~~N~I~~~R~~gVGv~s~e~A~~~ 221 (398)
T COG0649 176 LELIREFLDYFPKRLDEYEKLLTKNRIWRARLEGVGVLSKEEALEW 221 (398)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhcChHHHHhcccceeecHHHHHHh
Confidence 36777888876 899999999999999999999999999999874
No 114
>COG3088 CcmH Uncharacterized protein involved in biosynthesis of c-type cytochromes [Posttranslational modification, protein turnover, chaperones]
Probab=23.04 E-value=35 Score=26.65 Aligned_cols=20 Identities=20% Similarity=0.650 Sum_probs=15.2
Q ss_pred cchHHHHHHHHHhhhcchhHHHH
Q 033691 40 FTTEQILRFIRRCHMKWGDFITL 62 (113)
Q Consensus 40 ~t~e~ilr~i~r~~~k~Gd~itl 62 (113)
-|+.||+.|.-- .|||||++
T Consensus 78 kS~~qIid~mVa---RYG~FVly 97 (153)
T COG3088 78 KSDQQIIDYMVA---RYGEFVLY 97 (153)
T ss_pred CcHHHHHHHHHH---hhcceeee
Confidence 367788887654 79999975
No 115
>KOG3321 consensus Mitochondrial ribosomal protein S10 [Translation, ribosomal structure and biogenesis]
Probab=23.01 E-value=57 Score=26.17 Aligned_cols=22 Identities=23% Similarity=0.218 Sum_probs=18.2
Q ss_pred hhhcccccchHHHHHHHHHhhh
Q 033691 33 YLEGMSMFTTEQILRFIRRCHM 54 (113)
Q Consensus 33 ~Li~Ltk~t~e~ilr~i~r~~~ 54 (113)
+|.+++.-|.|-.|+||+||.|
T Consensus 118 ~l~~~tgsTl~tfleYI~rn~p 139 (175)
T KOG3321|consen 118 ELYSVTGSTLDTFLEYIQRNLP 139 (175)
T ss_pred HHhhcCchHHHHHHHHHHhhCh
Confidence 4667788888889999999965
No 116
>TIGR00434 cysH phosophoadenylyl-sulfate reductase (thioredoxin). This enzyme, involved in the assimilation of inorganic sulfate, is designated cysH in Bacteria and MET16 in Saccharomyces cerevisiae. Synonyms include phosphoadenosine phosphosulfate reductase, PAPS reductase, and PAPS reductase, thioredoxin-dependent. In a reaction requiring reduced thioredoxin and NADPH, it converts 3(prime)-phosphoadenylylsulfate (PAPS) to sulfite and adenosine 3(prime),5(prime) diphosphate (PAP). A related family of plant enzymes, scoring below the trusted cutoff, differs in having a thioredoxin-like C-terminal domain, not requiring thioredoxin, and in having a preference for 5(prime)-adenylylsulfate (APS) over PAPS.
Probab=22.95 E-value=66 Score=23.78 Aligned_cols=18 Identities=28% Similarity=0.335 Sum_probs=16.0
Q ss_pred CCCCHHHHHHHHHhcCcc
Q 033691 1 MYLSIKDVGLWLEEINLG 18 (113)
Q Consensus 1 ~~WS~EDVa~WLeeiGLg 18 (113)
++||.+||-+.|.+.|++
T Consensus 151 ~dWt~~dVw~Yi~~~~lp 168 (212)
T TIGR00434 151 IDWTWKDVYQYIDAHNLP 168 (212)
T ss_pred hhCCHHHHHHHHHHcCCC
Confidence 479999999999999987
No 117
>PRK14454 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=22.38 E-value=1.5e+02 Score=24.56 Aligned_cols=47 Identities=19% Similarity=0.456 Sum_probs=30.1
Q ss_pred CCCHHHHHHHHHhcCcchHHHHhhhcCCchhhhhcccccchHHHHHHHHHh-hhcchhHHHHHHHHHH
Q 033691 2 YLSIKDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRC-HMKWGDFITLCKELRR 68 (113)
Q Consensus 2 ~WS~EDVa~WLeeiGLgqYre~Fk~N~IdG~~Li~Ltk~t~e~ilr~i~r~-~~k~Gd~itl~~El~~ 68 (113)
.-+.++..+|+.+.|++.|| ..||.++|.+- ...|-+.-.|=+++|.
T Consensus 6 ~~~~~~l~~~~~~~g~~~~r--------------------~~qi~~~~~~~~~~~~~~m~~l~~~~r~ 53 (342)
T PRK14454 6 DFTLEELKEWMKENGEKKFR--------------------AKQIFDWIYKKGVTDFDEMTNIPKNLRE 53 (342)
T ss_pred cCCHHHHHHHHHHcCCCchH--------------------HHHHHHHHHHcCCCCHHHhccccHHHHH
Confidence 35678888999998888887 45666666543 2335554445555543
No 118
>cd03423 SirA SirA (also known as UvrY, and YhhP) belongs to a family of two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is thought to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=22.37 E-value=65 Score=20.29 Aligned_cols=15 Identities=7% Similarity=0.142 Sum_probs=13.2
Q ss_pred CHHHHHHHHHhcCcc
Q 033691 4 SIKDVGLWLEEINLG 18 (113)
Q Consensus 4 S~EDVa~WLeeiGLg 18 (113)
+.+||..|.++.|+.
T Consensus 38 s~~di~~~~~~~g~~ 52 (69)
T cd03423 38 TTRDIPKFCTFLGHE 52 (69)
T ss_pred hHHHHHHHHHHcCCE
Confidence 578999999999986
No 119
>CHL00017 ndhH NADH dehydrogenase subunit 7
Probab=22.15 E-value=76 Score=27.09 Aligned_cols=42 Identities=14% Similarity=0.281 Sum_probs=36.7
Q ss_pred HHHHHHHHhc--CcchHHHHhhhcCCchhhhhcccccchHHHHH
Q 033691 6 KDVGLWLEEI--NLGGYRQIFKENGVNGEYLEGMSMFTTEQILR 47 (113)
Q Consensus 6 EDVa~WLeei--GLgqYre~Fk~N~IdG~~Li~Ltk~t~e~ilr 47 (113)
+++.++|+++ .+.+|.+.|.+|.|=-..+.....+|.|++++
T Consensus 173 ~~i~~~l~~~~~~~~~~~~l~~~n~i~~~R~~gvGvl~~~~A~~ 216 (393)
T CHL00017 173 DKCLDFCDYFLTGVAEYQKLITRNPIFLERVEGVGIIGGEEAIN 216 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchHHHhcCCEEecCHHHHHH
Confidence 4566677765 78999999999999999999999999999984
No 120
>PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=21.99 E-value=1.4e+02 Score=24.91 Aligned_cols=46 Identities=20% Similarity=0.430 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHhcCcchHHHHhhhcCCchhhhhcccccchHHHHHHHHHh-hhcchhHHHHHHHHHH
Q 033691 3 LSIKDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRC-HMKWGDFITLCKELRR 68 (113)
Q Consensus 3 WS~EDVa~WLeeiGLgqYre~Fk~N~IdG~~Li~Ltk~t~e~ilr~i~r~-~~k~Gd~itl~~El~~ 68 (113)
-|.++..+|+.+.|++.|| ..||.++|.+- ...|-+.-.|=+++|.
T Consensus 7 ~~~~~l~~~~~~~g~~~~r--------------------~~qi~~~~~~~~~~~~~~m~~l~~~~r~ 53 (348)
T PRK14467 7 YNLEELEEFVVELGWEKYR--------------------AKQIAKWVYKKKVTDFDEMTDLSKEDRQ 53 (348)
T ss_pred CCHHHHHHHHHHcCCCchH--------------------HHHHHHHHHhcCCCCHHHhccccHHHHH
Confidence 3678888888888888877 45676666653 2345555555555553
No 121
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=21.28 E-value=1.4e+02 Score=21.09 Aligned_cols=45 Identities=24% Similarity=0.236 Sum_probs=29.7
Q ss_pred hhcCCchhhhhcccc-----cchHHH---HHHHHHhhhcch---hHHHHHHHHHHH
Q 033691 25 KENGVNGEYLEGMSM-----FTTEQI---LRFIRRCHMKWG---DFITLCKELRRI 69 (113)
Q Consensus 25 k~N~IdG~~Li~Ltk-----~t~e~i---lr~i~r~~~k~G---d~itl~~El~~i 69 (113)
+=|+|.+.+|..+++ +|++|+ +.++|-=-...| .+-.+++||.++
T Consensus 11 Kln~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~r~~llkeia~i 66 (85)
T PF11116_consen 11 KLNNITAKELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQERKKLLKEIAKI 66 (85)
T ss_pred HHhcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHh
Confidence 347888888887763 566665 666654333333 467888888876
No 122
>PF06304 DUF1048: Protein of unknown function (DUF1048); InterPro: IPR008316 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 2O3L_B 2HH6_A 2O4T_A.
Probab=21.26 E-value=1.7e+02 Score=20.96 Aligned_cols=35 Identities=23% Similarity=0.449 Sum_probs=20.2
Q ss_pred CCchhhhhcccccchHHHHHHHHHh-------hhcch-hHHHHHHHH
Q 033691 28 GVNGEYLEGMSMFTTEQILRFIRRC-------HMKWG-DFITLCKEL 66 (113)
Q Consensus 28 ~IdG~~Li~Ltk~t~e~ilr~i~r~-------~~k~G-d~itl~~El 66 (113)
..+|+.+..+ .+.||...-.. +-=.| |...||+||
T Consensus 40 ~~~g~~~~~i----l~dildlfEe~aadG~~V~eviGeD~~~Fcdel 82 (103)
T PF06304_consen 40 PTDGRDMMEI----LSDILDLFEEAAADGKSVREVIGEDVAAFCDEL 82 (103)
T ss_dssp BSSHHHHHHH----HHHHHHHHHHHHHTT--HHHHH-S-HHHHHHHH
T ss_pred CCcHHHHHHH----HHHHHHHHHHHHHcCCChhHhhCCCHHHHHHHH
Confidence 4556666555 55555555443 33456 888999987
No 123
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=21.10 E-value=2.2e+02 Score=22.51 Aligned_cols=65 Identities=15% Similarity=0.230 Sum_probs=39.3
Q ss_pred HHHHHHHHHhcCcchHHH-HhhhcCCchhhhhcc--cccchHHHHHHHHHh---------hhcch------hHHHHHHHH
Q 033691 5 IKDVGLWLEEINLGGYRQ-IFKENGVNGEYLEGM--SMFTTEQILRFIRRC---------HMKWG------DFITLCKEL 66 (113)
Q Consensus 5 ~EDVa~WLeeiGLgqYre-~Fk~N~IdG~~Li~L--tk~t~e~ilr~i~r~---------~~k~G------d~itl~~El 66 (113)
.+|+..-|.+-|+..|-. .++ -.+-+-+..+ .+.|+++.++-++.+ +|=+| |++.++..|
T Consensus 106 ~~e~l~~LkeAGl~~i~~~g~E--~l~~~~~~~i~~~~~t~~~~l~~i~~a~~~Gi~~~s~~iiG~~Et~ed~~~~l~~l 183 (309)
T TIGR00423 106 IEEVLKRLKKAGLDSMPGTGAE--ILDDSVRRKICPNKLSSDEWLEVIKTAHRLGIPTTATMMFGHVENPEHRVEHLLRI 183 (309)
T ss_pred HHHHHHHHHHcCCCcCCCCcch--hcCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCceeeEEecCCCCHHHHHHHHHHH
Confidence 467777777777776631 000 0111222233 467888876666665 34456 899999999
Q ss_pred HHHHH
Q 033691 67 RRIKV 71 (113)
Q Consensus 67 ~~ikv 71 (113)
+.+.+
T Consensus 184 r~l~~ 188 (309)
T TIGR00423 184 RKIQE 188 (309)
T ss_pred Hhhch
Confidence 98876
No 124
>PF00312 Ribosomal_S15: Ribosomal protein S15; InterPro: IPR000589 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S15 is one of the proteins from the small ribosomal subunit. In Escherichia coli, this protein binds to 16S ribosomal RNA and functions at early steps in ribosome assembly. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities [, ,], groups bacterial and plant chloroplast S15; archaeal Haloarcula marismortui HmaS15 (HS11); yeast mitochondrial S28; and mammalian, yeast, Brugia pahangi and Wuchereria bancrofti S13. S15 is a protein of 80 to 250 amino-acid residues.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1YSH_E 3U5C_N 3O30_G 3IZB_O 3O2Z_G 3U5G_N 1S1H_O 3MR8_O 3D5C_O 3MS0_O ....
Probab=20.99 E-value=1.2e+02 Score=20.41 Aligned_cols=56 Identities=20% Similarity=0.251 Sum_probs=34.2
Q ss_pred HHHHHHHHHhc-CcchHHHHhhhcCCchhhhhcccccchHHH---HHHHHHhhhcchhHHHHHHHH
Q 033691 5 IKDVGLWLEEI-NLGGYRQIFKENGVNGEYLEGMSMFTTEQI---LRFIRRCHMKWGDFITLCKEL 66 (113)
Q Consensus 5 ~EDVa~WLeei-GLgqYre~Fk~N~IdG~~Li~Ltk~t~e~i---lr~i~r~~~k~Gd~itl~~El 66 (113)
+.+|+..-+.| .|...-+.++...-+-+.|..| .... |.|+++ ..+-.+-.+|++|
T Consensus 21 evqia~LT~rI~~L~~Hl~~~kkD~~skr~L~~l----v~kRrrlL~YLrr--~~~~~Y~~~~~~L 80 (83)
T PF00312_consen 21 EVQIAILTERIRNLQEHLKKNKKDKHSKRGLLKL----VSKRRRLLKYLRR--KDFERYEWVLKKL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHH----HHHHHHHHHHHHH--HTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccceehhHH----HHHHHHHHHHHHh--CCHHHHHHHHHHh
Confidence 45666666666 5555555555555555555554 3443 788888 6677777777765
No 125
>PF06992 Phage_lambda_P: Replication protein P; InterPro: IPR009731 This family consists of several Bacteriophage lambda replication protein P like proteins. The bacteriophage lambda P protein promoters replication of the phage chromosome by recruiting a key component of the cellular replication machinery to the viral origin. Specifically, P protein delivers one or more molecules of Escherichia coli DnaB helicase to a nucleoprotein structure formed by the lambda O initiator at the lambda replication origin [].; GO: 0006270 DNA-dependent DNA replication initiation
Probab=20.90 E-value=1.5e+02 Score=24.38 Aligned_cols=37 Identities=38% Similarity=0.593 Sum_probs=26.6
Q ss_pred hHHHHhhhcCCchhhhhcccccchHHHHHHHHHh-------hhcchhHHHHHHH
Q 033691 19 GYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRC-------HMKWGDFITLCKE 65 (113)
Q Consensus 19 qYre~Fk~N~IdG~~Li~Ltk~t~e~ilr~i~r~-------~~k~Gd~itl~~E 65 (113)
++...|-+|+|. |.||+-.=|+++ --+-|.||.-|++
T Consensus 69 ~Wi~~f~engI~----------t~eQv~~Gm~~aR~~~spF~PS~GqFI~WCk~ 112 (233)
T PF06992_consen 69 QWIKAFAENGIT----------TMEQVRAGMRRARASESPFWPSPGQFIAWCKP 112 (233)
T ss_pred HHHHHHHHcCCC----------cHHHHHHHHHHHHhcCCCCCCChhHHHHHHhc
Confidence 445667888875 458886666666 4578999999984
No 126
>PF11989 Dsl1_C: Retrograde transport protein Dsl1 C terminal; InterPro: IPR021876 Dsl1 is a peripheral membrane protein required for transport between the Golgi and the endoplasmic reticulum []. It is localised to the ER membrane, and in vitro it specifically binds to coatomer, the major component of the protein coat of COPI vesicles []. Binding sites for coatomer are found on a disorganised region between the C and N termini of Dsl1 []. The C-terminal domain is involved in binding to the Sec39 subunit of the Dsl1p complex []. The N-terminal complexes with another subunit of the Dsl1p complex called Tip20 which forms heterodimers by pairing the N termini of each protein []. ; PDB: 3K8P_C.
Probab=20.84 E-value=1.4e+02 Score=24.84 Aligned_cols=35 Identities=17% Similarity=0.226 Sum_probs=24.0
Q ss_pred cccchHHHHHHHHHhhhcchhHHHHHHHHHHHHHH
Q 033691 38 SMFTTEQILRFIRRCHMKWGDFITLCKELRRIKVA 72 (113)
Q Consensus 38 tk~t~e~ilr~i~r~~~k~Gd~itl~~El~~ikva 72 (113)
--|+||+++..|+-+-..=.=+=..+.|+|.|+=+
T Consensus 254 ~~fsTdElI~lIkslFadS~lR~n~I~eI~eiRn~ 288 (291)
T PF11989_consen 254 YDFSTDELIQLIKSLFADSPLRDNYIDEIREIRNM 288 (291)
T ss_dssp GGS-HHHHHHHHHHHS---HHHHHHHHHHHHHHHH
T ss_pred hcccHHHHHHHHHHHhcCChHHHHHHHHHHHHHcc
Confidence 34889999999988866666667788888887644
No 127
>PF05409 Peptidase_C30: Coronavirus endopeptidase C30; InterPro: IPR008740 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases correspond to MEROPS peptidase family C30 (clan PA(C)). These peptidases are related to serine endopeptidases of family S1 and are restricted to RNA viruses, where they are involved in viral polyprotein processing during replication [, , ]. This entry represents the CoV M-pro which comprises three domains. Domains I and II are six-stranded antiparallel beta barrels and together resemble the architecture of chymotrypsin and of picornaviruses 3C proteinases. The substrate-binding site is located in a cleft between these two domains. The catalytic site is situated at the centre of the cleft. A long loop connects domain II to the C-terminal domain (domain III). This latter domain, a globular cluster of five helices, has been implicated in the proteolytic activity of M-pro. In the active site of M-pro, Cys and His form a catalytic dyad. In contrast to serine proteinases and other cysteine proteinases, which have a catalytic triad, there is no third catalytic residue present [, , , ]. ; GO: 0019082 viral protein processing; PDB: 2VJ1_B 2K7X_A 2Q6D_B 2Q6F_A 1P9U_E 1LVO_B 2AMP_B 1P9S_A 2ZU2_A 3D23_A ....
Probab=20.82 E-value=78 Score=27.13 Aligned_cols=84 Identities=23% Similarity=0.318 Sum_probs=49.9
Q ss_pred CHHHHHHHHHhcCcchHHHHhhhcCCchhhhhcccccchHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhCcccccCC
Q 033691 4 SIKDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKVACLKGEQKVRRP 83 (113)
Q Consensus 4 S~EDVa~WLeeiGLgqYre~Fk~N~IdG~~Li~Ltk~t~e~ilr~i~r~~~k~Gd~itl~~El~~ikva~~~~~~~~~~~ 83 (113)
|+||--+|--.=||.+|... . .=..|.+.|..+-|++|.-|.++|..||..-- -|--.++ -
T Consensus 198 svedFN~WA~~N~ft~~~~~---~--~~~~Laa~TgVsV~rlLaaI~~L~~g~~G~~I-------------lG~~~le-d 258 (293)
T PF05409_consen 198 SVEDFNEWAMNNGFTSFSSD---D--AFDMLAAKTGVSVERLLAAIQRLHKGFGGRTI-------------LGSCSLE-D 258 (293)
T ss_dssp -HHHHHHHHHHTTB--SSHH---H--HHHHHHHHHT--HHHHHHHHHHHHHTTTTT-B-------------TTBSS---T
T ss_pred cHHHHHHHHHhCCCcccchh---h--HHHHHHHHhCCcHHHHHHHHHHHhcCCCCCcc-------------ccccccc-c
Confidence 78999999999999887432 0 12357788999999999999999999997532 2333332 3
Q ss_pred CCCCcchhhHhHHHhhhccccceEEe
Q 033691 84 WWAPSCLSVVFVKVAKRNRQSRVVSL 109 (113)
Q Consensus 84 ~w~p~~~s~v~~~~~~~~~~~~~~~~ 109 (113)
.|.|+. |+-.+|--|-||.+++.
T Consensus 259 E~Tp~~---V~~Q~~gV~LQs~~~~~ 281 (293)
T PF05409_consen 259 EFTPEM---VYNQMAGVNLQSGVVKS 281 (293)
T ss_dssp SS-HHH---HHHHHTSSC--S-----
T ss_pred cCCHHH---HhhhccceEeecceeee
Confidence 467754 67777888999988874
No 128
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=20.73 E-value=2.3e+02 Score=19.22 Aligned_cols=14 Identities=36% Similarity=0.672 Sum_probs=7.0
Q ss_pred CHHHHHHHHHhcCc
Q 033691 4 SIKDVGLWLEEINL 17 (113)
Q Consensus 4 S~EDVa~WLeeiGL 17 (113)
+.+++..|+...|.
T Consensus 37 ~~~el~~~~~~~~~ 50 (111)
T cd03036 37 SKEELKKWLEKSGL 50 (111)
T ss_pred cHHHHHHHHHHcCC
Confidence 34455555555543
No 129
>KOG3804 consensus Transcription factor NERF and related proteins, contain ETS domain [Transcription]
Probab=20.66 E-value=43 Score=29.10 Aligned_cols=76 Identities=28% Similarity=0.263 Sum_probs=50.3
Q ss_pred CCCHHHHHHHHHhc----CcchHHHHhhhcCCchhhhhcccccchHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhCc
Q 033691 2 YLSIKDVGLWLEEI----NLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKVACLKGE 77 (113)
Q Consensus 2 ~WS~EDVa~WLeei----GLgqYre~Fk~N~IdG~~Li~Ltk~t~e~ilr~i~r~~~k~Gd~itl~~El~~ikva~~~~~ 77 (113)
.|+-|||.+||... .++.--..|-.=.|+|..|..++ |+ .|+.|+ --.||.+ ...|+.++ +
T Consensus 64 ~W~rd~v~~~l~~~~~~~sl~~~~~~~~~f~m~g~~L~~~t----e~--d~~~r~-~~~gd~l--~~~lq~~~------~ 128 (390)
T KOG3804|consen 64 LWSRDDVLEWLSFAEAEFSLPANCIAFPRFDINGNALCSST----EE--DFRVRA-GTLGDVL--YNSLQEKK------E 128 (390)
T ss_pred cccccchhHHHHHHHHhccCCcccccccccCCCcchhcccc----HH--HhhhcC-CCccchh--hhhhhhhh------c
Confidence 59999999999754 56666677777789999999983 33 344553 3345553 34555543 3
Q ss_pred ccccCCCCCCcchhh
Q 033691 78 QKVRRPWWAPSCLSV 92 (113)
Q Consensus 78 ~~~~~~~w~p~~~s~ 92 (113)
+.-...+|.|+--..
T Consensus 129 ~~~~~~~~~~s~~~~ 143 (390)
T KOG3804|consen 129 QSEDAEKTGPSSGAG 143 (390)
T ss_pred ccccchhccCCCccc
Confidence 455567777765533
No 130
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=20.66 E-value=1.6e+02 Score=24.79 Aligned_cols=45 Identities=20% Similarity=0.385 Sum_probs=29.6
Q ss_pred CHHHHHHHHHhcCcchHHHHhhhcCCchhhhhcccccchHHHHHHHHHh-hhcchhHHHHHHHHHH
Q 033691 4 SIKDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRC-HMKWGDFITLCKELRR 68 (113)
Q Consensus 4 S~EDVa~WLeeiGLgqYre~Fk~N~IdG~~Li~Ltk~t~e~ilr~i~r~-~~k~Gd~itl~~El~~ 68 (113)
+.+++.+|+.+.|.+.|| ..||.++|.+- ...|.+.-.|=+++|.
T Consensus 11 ~~~~l~~~~~~~g~~~fr--------------------a~Qi~~wiy~~~~~~~~~mt~l~~~~r~ 56 (342)
T PRK14465 11 TLKELSEIMVSLGEKKFR--------------------AKQIYHGLYVNRYETWDQFTTFSKEVKE 56 (342)
T ss_pred CHHHHHHHHHHcCCCchH--------------------HHHHHHHHHHcCCCCHHHhccccHHHHH
Confidence 567777888888877776 46777776654 2446666666666664
No 131
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.66 E-value=1.6e+02 Score=28.32 Aligned_cols=24 Identities=33% Similarity=0.591 Sum_probs=21.8
Q ss_pred HHHHHHHHHhcCcchHHHHhhhcC
Q 033691 5 IKDVGLWLEEINLGGYRQIFKENG 28 (113)
Q Consensus 5 ~EDVa~WLeeiGLgqYre~Fk~N~ 28 (113)
.|++-+|-.+--|.+|.++|.+|.
T Consensus 230 reelIkwf~~qqL~ey~~IF~en~ 253 (793)
T KOG2180|consen 230 REELIKWFCSQQLEEYEQIFRENE 253 (793)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccH
Confidence 478889999999999999999986
No 132
>cd08637 DNA_pol_A_pol_I_C Polymerase I functions primarily to fill DNA gaps that arise during DNA repair, recombination and replication. Family A polymerase (polymerase I) functions primarily to fill DNA gaps that arise during DNA repair, recombination and replication. DNA-dependent DNA polymerases can be classified in six main groups based upon phylogenetic relationships with E. coli polymerase I (classA), E. coli polymerase II (class B), E.coli polymerase III (class C), euryarchaaeota polymerase II (class D), human polymerase beta (class x), E. coli UmuC/DinB and eukaryotic RAP 30/Xeroderma pigmentosum variant (class Y). Family A polymerase are found primarily in organisms related to prokaryotes and include prokaryotic DNA polymerase I (pol I) ,mitochondrial polymerase delta, and several bacteriphage polymerases including those from odd-numbered phage (T3, T5, and T7). Prokaryotic Pol Is have two functional domains located on the same polypeptide; a 5'-3' polymerase and 5'-3' exonuc
Probab=20.26 E-value=2.4e+02 Score=23.50 Aligned_cols=17 Identities=35% Similarity=0.272 Sum_probs=13.8
Q ss_pred CHHHHHHHH-HhcCcchH
Q 033691 4 SIKDVGLWL-EEINLGGY 20 (113)
Q Consensus 4 S~EDVa~WL-eeiGLgqY 20 (113)
|+.+|+.|| +.+|++.-
T Consensus 35 S~~qv~~~L~~~lgl~~~ 52 (377)
T cd08637 35 SPKQLGEVLFEKLGLPVG 52 (377)
T ss_pred CHHHHHHHHHHhCCCCCC
Confidence 678999998 77798854
Done!