BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>033692
MGFPSEVRDIFASRRSNNSPLIASPAEDLKAKAANDCVQEGVRAGLKAAAVMCVVTAVPT
LVAVRKIPWAKANLNYTGQALIISAVSIASYFITVDKTILECARRNAQYGKPT

High Scoring Gene Products

Symbol, full name Information P value
AT5G25940 protein from Arabidopsis thaliana 1.8e-23

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  033692
        (113 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2180632 - symbol:AT5G25940 "AT5G25940" species...   270  1.8e-23   1


>TAIR|locus:2180632 [details] [associations]
            symbol:AT5G25940 "AT5G25940" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
            "mitochondrion" evidence=IDA] [GO:0009723 "response to ethylene
            stimulus" evidence=RCA] GO:GO:0005739 EMBL:CP002688 EMBL:AF149413
            UniGene:At.30881 UniGene:At.66768 EMBL:BT006144 EMBL:BT008570
            EMBL:AK229683 IPI:IPI00540933 RefSeq:NP_197966.1 STRING:Q9XGZ3
            PRIDE:Q9XGZ3 EnsemblPlants:AT5G25940.1 GeneID:832663
            KEGG:ath:AT5G25940 TAIR:At5g25940 HOGENOM:HOG000241682
            InParanoid:Q9XGZ3 OMA:DINNCNG PhylomeDB:Q9XGZ3
            ProtClustDB:CLSN2721593 ArrayExpress:Q9XGZ3 Genevestigator:Q9XGZ3
            InterPro:IPR005050 Pfam:PF03386 ProDom:PD064786 Uniprot:Q9XGZ3
        Length = 115

 Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 59/103 (57%), Positives = 69/103 (66%)

Query:     6 EVRDIFASRRSNNSPLIASPAEDLKAKAANDCVQEGVRAGLKAAAVMCVVTAVPTLVAVR 65
             E R    +RR  N  +IASP E  K   A    Q G  AG KAAAV  V +A+PT+ AVR
Sbjct:     2 ENRSEMGNRRQQNLFVIASPDEIAKIHRAETSKQAGAIAGAKAAAVAAVASAIPTVAAVR 61

Query:    66 KIPWAKANLNYTGQALIISAVSIASYFITVDKTILECARRNAQ 108
               PWAKANLNYT QALIIS+ SIA++FIT DKTIL+ ARRN +
Sbjct:    62 MFPWAKANLNYTAQALIISSASIAAFFITADKTILQGARRNTE 104


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.130   0.373    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      113       113   0.00091  102 3  11 22  0.43    30
                                                     29  0.44    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  555 (59 KB)
  Total size of DFA:  109 KB (2073 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.92u 0.11s 11.03t   Elapsed:  00:00:01
  Total cpu time:  10.92u 0.11s 11.03t   Elapsed:  00:00:01
  Start:  Fri May 10 00:03:28 2013   End:  Fri May 10 00:03:29 2013

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