Query 033692
Match_columns 113
No_of_seqs 30 out of 32
Neff 2.2
Searched_HMMs 46136
Date Fri Mar 29 05:11:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033692.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033692hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03386 ENOD93: Early nodulin 100.0 1.1E-49 2.4E-54 276.9 4.3 79 29-107 1-79 (79)
2 PF15141 DUF4574: Domain of un 26.0 43 0.00094 23.8 1.4 18 19-36 23-40 (84)
3 smart00341 HRDC Helicase and R 20.9 84 0.0018 19.4 1.9 20 88-107 24-43 (81)
4 COG3179 Predicted chitinase [G 19.5 40 0.00086 27.6 0.2 17 70-86 59-75 (206)
5 KOG0774 Transcription factor P 17.0 1.1E+02 0.0025 26.5 2.4 16 23-38 214-229 (334)
6 PF05920 Homeobox_KN: Homeobox 16.5 1E+02 0.0023 18.3 1.5 16 23-38 9-24 (40)
7 PF05589 DUF768: Protein of un 15.0 2.8E+02 0.0061 18.5 3.4 43 6-51 7-49 (64)
8 PRK00924 5-keto-4-deoxyuronate 14.7 41 0.00089 28.0 -0.8 15 1-15 218-232 (276)
9 smart00165 UBA Ubiquitin assoc 13.1 1.4E+02 0.0031 16.3 1.4 15 1-15 11-25 (37)
10 COG1962 MtrH Tetrahydromethano 13.0 1.5E+02 0.0032 25.7 2.0 32 11-42 93-124 (313)
No 1
>PF03386 ENOD93: Early nodulin 93 ENOD93 protein; InterPro: IPR005050 The expression of early nodulin (ENOD) genes has been well characterised in several legume species. Based on their biochemical attributes and expression patterns, they are postulated to have roles in cell structure, in the control of nodule ontogeny by the degradation of Nod factor, and in carbon metabolism [].
Probab=100.00 E-value=1.1e-49 Score=276.89 Aligned_cols=79 Identities=67% Similarity=0.972 Sum_probs=78.2
Q ss_pred HHHHHhhHhhHHHHHhhhhHHHHHHHhhhccchhhhhchhhhhhccCcchhhhhhhhhhceeeeeeehhHHHHHHHhhh
Q 033692 29 LKAKAANDCVQEGVRAGLKAAAVMCVVTAVPTLVAVRKIPWAKANLNYTGQALIISAVSIASYFITVDKTILECARRNA 107 (113)
Q Consensus 29 ~k~~~ak~cs~Eg~~aG~KaA~va~vasAipTL~svRm~pWakaNlN~TaqALIIs~aa~aayFI~aDKtIL~~aRkns 107 (113)
||++++|+|+|||+++|+|+|+|++++|+||||+||||+||+|+||||||||||||+++||+|||++|||||+|+||||
T Consensus 1 Qk~~~a~~cs~Egv~AG~KaA~va~vasAiptl~svR~~pWakanln~t~qAliIs~aa~~ayFI~aDKtIL~~aR~~s 79 (79)
T PF03386_consen 1 QKLAMAKRCSQEGVRAGAKAAAVATVASAIPTLASVRMLPWAKANLNYTAQALIISAAAGAAYFIVADKTILECARKNS 79 (79)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHhhccchhheeeeeHHHHhcCCcccceeeeeehhhheeeeeccHHHHHHhhccC
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999999999996
No 2
>PF15141 DUF4574: Domain of unknown function (DUF4574)
Probab=26.00 E-value=43 Score=23.84 Aligned_cols=18 Identities=17% Similarity=0.340 Sum_probs=15.4
Q ss_pred CccccCchHHHHHHHhhH
Q 033692 19 SPLIASPAEDLKAKAAND 36 (113)
Q Consensus 19 ~~~i~sp~~~~k~~~ak~ 36 (113)
-|.+.+|.||||.++-|.
T Consensus 23 L~~LvtPgeerK~e~lK~ 40 (84)
T PF15141_consen 23 LFVLVTPGEERKQEMLKE 40 (84)
T ss_pred eeeEeCCcHHHHHHHHHH
Confidence 477899999999998874
No 3
>smart00341 HRDC Helicase and RNase D C-terminal. Hypothetical role in nucleic acid binding. Mutations in the HRDC domain cause human disease.
Probab=20.86 E-value=84 Score=19.35 Aligned_cols=20 Identities=25% Similarity=0.524 Sum_probs=17.2
Q ss_pred ceeeeeeehhHHHHHHHhhh
Q 033692 88 IASYFITVDKTILECARRNA 107 (113)
Q Consensus 88 ~aayFI~aDKtIL~~aRkns 107 (113)
+.-|+|..|+++++.|++..
T Consensus 24 ~~~~~I~~~~~L~~ia~~~P 43 (81)
T smart00341 24 VPPYFVLPDETLIKMAAALP 43 (81)
T ss_pred CCCeEEECHHHHHHHHHHCC
Confidence 55799999999999998764
No 4
>COG3179 Predicted chitinase [General function prediction only]
Probab=19.50 E-value=40 Score=27.60 Aligned_cols=17 Identities=35% Similarity=0.515 Sum_probs=13.9
Q ss_pred hhhccCcchhhhhhhhh
Q 033692 70 AKANLNYTGQALIISAV 86 (113)
Q Consensus 70 akaNlN~TaqALIIs~a 86 (113)
.+.||||.+|.|.=.+.
T Consensus 59 l~EnlnYSaq~L~~tf~ 75 (206)
T COG3179 59 LDENLNYSAQGLLQTFP 75 (206)
T ss_pred ehhhcchHHHHHHHhcc
Confidence 57999999999976543
No 5
>KOG0774 consensus Transcription factor PBX and related HOX domain proteins [Transcription]
Probab=16.98 E-value=1.1e+02 Score=26.52 Aligned_cols=16 Identities=31% Similarity=0.601 Sum_probs=14.5
Q ss_pred cCchHHHHHHHhhHhh
Q 033692 23 ASPAEDLKAKAANDCV 38 (113)
Q Consensus 23 ~sp~~~~k~~~ak~cs 38 (113)
+-|+||.|-.+||+|.
T Consensus 214 PYPSee~K~eLAkqCn 229 (334)
T KOG0774|consen 214 PYPSEEAKEELAKQCN 229 (334)
T ss_pred CCCcHHHHHHHHHHcC
Confidence 6799999999999995
No 6
>PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3K2A_B 2LK2_A 1X2N_A 2DMN_A.
Probab=16.50 E-value=1e+02 Score=18.34 Aligned_cols=16 Identities=19% Similarity=0.246 Sum_probs=11.1
Q ss_pred cCchHHHHHHHhhHhh
Q 033692 23 ASPAEDLKAKAANDCV 38 (113)
Q Consensus 23 ~sp~~~~k~~~ak~cs 38 (113)
+=|++|+|..+++++.
T Consensus 9 PYPs~~ek~~L~~~tg 24 (40)
T PF05920_consen 9 PYPSKEEKEELAKQTG 24 (40)
T ss_dssp GS--HHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHcC
Confidence 6688999999987763
No 7
>PF05589 DUF768: Protein of unknown function (DUF768); InterPro: IPR008486 This family consists of several uncharacterised hypothetical proteins from Rhizobium loti (Mesorhizobium loti).
Probab=15.02 E-value=2.8e+02 Score=18.54 Aligned_cols=43 Identities=14% Similarity=0.166 Sum_probs=28.5
Q ss_pred hhhhhhhhccCCCCccccCchHHHHHHHhhHhhHHHHHhhhhHHHH
Q 033692 6 EVRDIFASRRSNNSPLIASPAEDLKAKAANDCVQEGVRAGLKAAAV 51 (113)
Q Consensus 6 e~rd~~~~~~~~~~~~i~sp~~~~k~~~ak~cs~Eg~~aG~KaA~v 51 (113)
+.-|-|.+++-... +.+.+..=-.+|++|-++|-.+|...--+
T Consensus 7 ~Fl~~WI~e~V~~~---~~~d~is~~~La~kl~adA~a~Gi~~~ei 49 (64)
T PF05589_consen 7 EFLDSWIAENVPDT---PKADIISAAELAEKLFADAEAAGIPREEI 49 (64)
T ss_pred HHHHHHHHhcCCCc---cccchhhHHHHHHHHHHHHHHcCCCHHHH
Confidence 55678998653222 33444444568999999999888876443
No 8
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=14.69 E-value=41 Score=28.01 Aligned_cols=15 Identities=40% Similarity=0.627 Sum_probs=13.4
Q ss_pred CCCCchhhhhhhhcc
Q 033692 1 MGFPSEVRDIFASRR 15 (113)
Q Consensus 1 mg~pse~rd~~~~~~ 15 (113)
||=|.|+|++|+.|.
T Consensus 218 mG~pdETrh~~v~n~ 232 (276)
T PRK00924 218 MGEPQETRHIVVHNE 232 (276)
T ss_pred CCCccceeeEEEECC
Confidence 899999999999854
No 9
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=13.15 E-value=1.4e+02 Score=16.27 Aligned_cols=15 Identities=27% Similarity=0.184 Sum_probs=8.8
Q ss_pred CCCCchhhhhhhhcc
Q 033692 1 MGFPSEVRDIFASRR 15 (113)
Q Consensus 1 mg~pse~rd~~~~~~ 15 (113)
||||.+.-.-+...+
T Consensus 11 mGf~~~~a~~aL~~~ 25 (37)
T smart00165 11 MGFSREEALKALRAA 25 (37)
T ss_pred cCCCHHHHHHHHHHh
Confidence 777777555554433
No 10
>COG1962 MtrH Tetrahydromethanopterin S-methyltransferase, subunit H [Coenzyme metabolism]
Probab=12.99 E-value=1.5e+02 Score=25.71 Aligned_cols=32 Identities=25% Similarity=0.376 Sum_probs=25.6
Q ss_pred hhhccCCCCccccCchHHHHHHHhhHhhHHHH
Q 033692 11 FASRRSNNSPLIASPAEDLKAKAANDCVQEGV 42 (113)
Q Consensus 11 ~~~~~~~~~~~i~sp~~~~k~~~ak~cs~Eg~ 42 (113)
|+..-+...|||-|+.-|-|++-+|.|+.-|.
T Consensus 93 fvadVtDsPfliDSt~gevr~aaak~a~EvGl 124 (313)
T COG1962 93 FVADVTDSPFLIDSTEGEVRAAAAKYASEVGL 124 (313)
T ss_pred hheecccCceeecccchHHHHHHHhhhhhhch
Confidence 44445567999999999999999998886554
Done!