Query 033692
Match_columns 113
No_of_seqs 30 out of 32
Neff 2.2
Searched_HMMs 29240
Date Mon Mar 25 08:16:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033692.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033692hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2rhf_A DNA helicase RECQ; HRDC 23.4 21 0.00072 21.9 0.4 20 88-107 24-43 (77)
2 2kv2_A Bloom syndrome protein; 23.1 21 0.00072 22.5 0.4 20 88-107 26-45 (85)
3 1wud_A ATP-dependent DNA helic 21.8 23 0.0008 22.6 0.4 20 88-107 32-51 (89)
4 1nlx_A PHL P VI, pollen allerg 20.3 66 0.0023 23.1 2.6 26 26-59 6-31 (111)
5 2ifo_A Inovirus; helical virus 19.3 85 0.0029 19.2 2.6 31 42-72 14-44 (46)
6 2dgz_A Werner syndrome protein 17.5 33 0.0011 23.3 0.4 20 88-107 41-60 (113)
7 2rrd_A BLM HRDC domain, HRDC d 16.9 35 0.0012 22.6 0.4 20 88-107 41-60 (101)
8 2jx6_A DD K, dermadistinctin-K 16.8 1.1E+02 0.0037 18.0 2.5 19 35-53 7-25 (34)
9 2e1f_A Werner syndrome ATP-dep 16.6 35 0.0012 22.7 0.4 20 88-107 34-53 (103)
10 3g8y_A SUSD/RAGB-associated es 10.0 72 0.0025 23.7 0.4 15 61-75 377-391 (391)
No 1
>2rhf_A DNA helicase RECQ; HRDC, D. radiodurans, ATP-binding, hydrolase nucleotide-binding; HET: DNA; 1.10A {Deinococcus radiodurans}
Probab=23.36 E-value=21 Score=21.92 Aligned_cols=20 Identities=15% Similarity=0.300 Sum_probs=17.3
Q ss_pred ceeeeeeehhHHHHHHHhhh
Q 033692 88 IASYFITVDKTILECARRNA 107 (113)
Q Consensus 88 ~aayFI~aDKtIL~~aRkns 107 (113)
+..|+|..|+++.+.|++..
T Consensus 24 vpp~~I~~d~~L~~iA~~~P 43 (77)
T 2rhf_A 24 YSAFVVFTNATLEALAARQP 43 (77)
T ss_dssp CCHHHHCCHHHHHHHHHHCC
T ss_pred CCcceeeCHHHHHHHHHhCC
Confidence 55799999999999999864
No 2
>2kv2_A Bloom syndrome protein; HRDC domain, disease mutation, DNA replicati binding, nucleotide-binding, nucleus, gene regulation; NMR {Homo sapiens}
Probab=23.13 E-value=21 Score=22.52 Aligned_cols=20 Identities=15% Similarity=0.067 Sum_probs=17.3
Q ss_pred ceeeeeeehhHHHHHHHhhh
Q 033692 88 IASYFITVDKTILECARRNA 107 (113)
Q Consensus 88 ~aayFI~aDKtIL~~aRkns 107 (113)
+-.|+|..|+++.+.|++..
T Consensus 26 vp~~~If~d~tL~~iA~~~P 45 (85)
T 2kv2_A 26 VHYFNIFNTVTLKKLAESLS 45 (85)
T ss_dssp SCHHHHCCHHHHHHHHHHCC
T ss_pred CCcceeECHHHHHHHHHhCC
Confidence 56799999999999999764
No 3
>1wud_A ATP-dependent DNA helicase RECQ; DNA-binding domain, HRDC, hydrolase; 2.20A {Escherichia coli} SCOP: a.60.8.1
Probab=21.76 E-value=23 Score=22.56 Aligned_cols=20 Identities=25% Similarity=0.466 Sum_probs=17.1
Q ss_pred ceeeeeeehhHHHHHHHhhh
Q 033692 88 IASYFITVDKTILECARRNA 107 (113)
Q Consensus 88 ~aayFI~aDKtIL~~aRkns 107 (113)
+..|+|..|+++.+.|++..
T Consensus 32 vpp~~If~D~tL~eiA~~~P 51 (89)
T 1wud_A 32 VPPYVVFNDATLIEMAEQMP 51 (89)
T ss_dssp SCHHHHCCHHHHHHHHHHCC
T ss_pred CCcceeeCHHHHHHHHHhCC
Confidence 45799999999999999754
No 4
>1nlx_A PHL P VI, pollen allergen PHL P 6; four-helix-bundle, structural genomics, PS protein structure initiative; 2.80A {Phleum pratense} SCOP: a.24.17.1
Probab=20.32 E-value=66 Score=23.14 Aligned_cols=26 Identities=31% Similarity=0.382 Sum_probs=16.1
Q ss_pred hHHHHHHHhhHhhHHHHHhhhhHHHHHHHhhhcc
Q 033692 26 AEDLKAKAANDCVQEGVRAGLKAAAVMCVVTAVP 59 (113)
Q Consensus 26 ~~~~k~~~ak~cs~Eg~~aG~KaA~va~vasAip 59 (113)
-+|||+ -|-+-+|+|+|. ++.+...|
T Consensus 6 T~eQkl-------~E~iN~~fKAav-aaaA~vPp 31 (111)
T 1nlx_A 6 TEEQKL-------IEDVNASFRAAM-ATTANVPP 31 (111)
T ss_dssp HHHHHH-------HHHHHHHHHHHH-HHTTTSCH
T ss_pred cHHHHH-------HHHHhHHHHHHH-HHhcCCCC
Confidence 467775 477889999654 33333333
No 5
>2ifo_A Inovirus; helical virus; NMR {Filamentous phage} SCOP: h.1.4.1
Probab=19.34 E-value=85 Score=19.20 Aligned_cols=31 Identities=10% Similarity=0.246 Sum_probs=20.2
Q ss_pred HHhhhhHHHHHHHhhhccchhhhhchhhhhh
Q 033692 42 VRAGLKAAAVMCVVTAVPTLVAVRKIPWAKA 72 (113)
Q Consensus 42 ~~aG~KaA~va~vasAipTL~svRm~pWaka 72 (113)
.+.++|++..+--...+-.++++..+.|+|.
T Consensus 14 al~~a~t~i~~IG~aVLgV~v~i~v~k~IRr 44 (46)
T 2ifo_A 14 AIQGAAGPIAAIGGAVLTVMVGIKVYKWVRR 44 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555544444444556788999999986
No 6
>2dgz_A Werner syndrome protein variant; HRDC domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.60.8.1
Probab=17.45 E-value=33 Score=23.35 Aligned_cols=20 Identities=10% Similarity=0.355 Sum_probs=17.1
Q ss_pred ceeeeeeehhHHHHHHHhhh
Q 033692 88 IASYFITVDKTILECARRNA 107 (113)
Q Consensus 88 ~aayFI~aDKtIL~~aRkns 107 (113)
+..|+|..|+++.+.|++.-
T Consensus 41 vP~y~If~D~tL~emA~~~P 60 (113)
T 2dgz_A 41 VPPAILATNKILVDMAKMRP 60 (113)
T ss_dssp CCHHHHCCHHHHHHHHHHCC
T ss_pred CCCCeeECHHHHHHHHHhCC
Confidence 56789999999999999754
No 7
>2rrd_A BLM HRDC domain, HRDC domain from bloom syndrome protein; DNA helicase, RECQ family, HRDC DOMA binding protein; NMR {Homo sapiens}
Probab=16.89 E-value=35 Score=22.61 Aligned_cols=20 Identities=15% Similarity=0.067 Sum_probs=17.4
Q ss_pred ceeeeeeehhHHHHHHHhhh
Q 033692 88 IASYFITVDKTILECARRNA 107 (113)
Q Consensus 88 ~aayFI~aDKtIL~~aRkns 107 (113)
+..|+|..|+++.+.|++.-
T Consensus 41 vP~~~If~D~tL~eiA~~~P 60 (101)
T 2rrd_A 41 VHYFNIFNTVTLKKLAESLS 60 (101)
T ss_dssp CCHHHHCCHHHHHHHHHHCC
T ss_pred CCCCeeECHHHHHHHHHhCC
Confidence 56799999999999999754
No 8
>2jx6_A DD K, dermadistinctin-K; peptide, alpha helix, amphipathic character, C-terminal carboxyamidation, membrane peptide; NMR {Phyllomedusa distincta} PDB: 2k9b_A
Probab=16.82 E-value=1.1e+02 Score=18.00 Aligned_cols=19 Identities=26% Similarity=0.254 Sum_probs=12.0
Q ss_pred hHhhHHHHHhhhhHHHHHH
Q 033692 35 NDCVQEGVRAGLKAAAVMC 53 (113)
Q Consensus 35 k~cs~Eg~~aG~KaA~va~ 53 (113)
|+.-.|++++.+|+|+=+.
T Consensus 7 K~~gk~aa~aaakAAgkAa 25 (34)
T 2jx6_A 7 KAAGKEAAKAAAKAAGKAA 25 (34)
T ss_dssp SHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445677777777766544
No 9
>2e1f_A Werner syndrome ATP-dependent helicase; HRDC domain, hydrolase; 2.00A {Homo sapiens} SCOP: a.60.8.1 PDB: 2e1e_A
Probab=16.61 E-value=35 Score=22.70 Aligned_cols=20 Identities=10% Similarity=0.355 Sum_probs=17.0
Q ss_pred ceeeeeeehhHHHHHHHhhh
Q 033692 88 IASYFITVDKTILECARRNA 107 (113)
Q Consensus 88 ~aayFI~aDKtIL~~aRkns 107 (113)
+..|+|..|+++.+.|++.-
T Consensus 34 vP~y~If~D~tL~emA~~~P 53 (103)
T 2e1f_A 34 VPPAILATNKILVDMAKMRP 53 (103)
T ss_dssp SCHHHHCCHHHHHHHHHHCC
T ss_pred CCCCeeECHHHHHHHHHhCC
Confidence 45789999999999999764
No 10
>3g8y_A SUSD/RAGB-associated esterase-like protein; structural genom joint center for structural genomics, JCSG; HET: MSE; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=10.05 E-value=72 Score=23.75 Aligned_cols=15 Identities=27% Similarity=0.527 Sum_probs=9.1
Q ss_pred hhhhhchhhhhhccC
Q 033692 61 LVAVRKIPWAKANLN 75 (113)
Q Consensus 61 L~svRm~pWakaNlN 75 (113)
+-+-=++||.|.+|+
T Consensus 377 f~~~~~~~~~~~~~~ 391 (391)
T 3g8y_A 377 FKNELVIPWLRKVLK 391 (391)
T ss_dssp CCHHHHHHHHHHHTC
T ss_pred hhhhhhhhHHHHhcC
Confidence 334446777777764
Done!