Query 033692
Match_columns 113
No_of_seqs 30 out of 32
Neff 2.2
Searched_HMMs 13730
Date Mon Mar 25 08:16:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033692.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033692hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1yt3a1 a.60.8.3 (A:194-294) R 17.8 18 0.0013 21.5 0.8 20 88-107 40-59 (101)
2 d1uasa1 b.71.1.1 (A:274-362) M 14.9 14 0.0011 22.0 -0.2 14 1-14 47-64 (89)
3 d2bvca1 d.15.9.1 (A:5-104) Glu 12.8 18 0.0013 21.8 -0.2 18 56-73 66-83 (100)
4 d2hbka1 a.60.8.4 (A:421-516) E 12.2 43 0.0031 19.7 1.4 35 73-107 13-57 (96)
5 d2cpra1 a.60.8.4 (A:483-595) E 12.1 27 0.002 21.4 0.5 20 88-107 44-63 (113)
6 d1v0ea2 b.108.1.3 (A:761-910) 10.9 20 0.0015 25.2 -0.6 13 75-87 72-84 (150)
7 d1ywka1 b.82.1.13 (A:1001-1260 10.5 14 0.00099 27.6 -1.7 15 1-15 218-232 (260)
8 d1f52a1 d.15.9.1 (A:1-100) Glu 10.3 25 0.0018 21.2 -0.2 17 56-72 66-82 (100)
9 d1o60a_ c.1.10.4 (A:) 3-deoxy- 10.3 81 0.0059 19.4 2.4 32 17-48 16-51 (281)
10 d1ez4a2 d.162.1.1 (A:163-334) 8.7 1.3E+02 0.0094 18.5 2.9 26 22-47 142-167 (171)
No 1
>d1yt3a1 a.60.8.3 (A:194-294) Ribonuclease D {Escherichia coli [TaxId: 562]}
Probab=17.81 E-value=18 Score=21.46 Aligned_cols=20 Identities=20% Similarity=0.338 Sum_probs=17.4
Q ss_pred ceeeeeeehhHHHHHHHhhh
Q 033692 88 IASYFITVDKTILECARRNA 107 (113)
Q Consensus 88 ~aayFI~aDKtIL~~aRkns 107 (113)
+..|||..|+++++.|+++.
T Consensus 40 ~p~~~Vl~d~~L~~la~~~P 59 (101)
T d1yt3a1 40 LAVNFVVREEHLWSVARYMP 59 (101)
T ss_dssp CCGGGTSCHHHHHHHHHHCC
T ss_pred CCcceeECHHHHHHHHHHCC
Confidence 56799999999999998764
No 2
>d1uasa1 b.71.1.1 (A:274-362) Melibiase {Rice (Oryza sativa) [TaxId: 4530]}
Probab=14.95 E-value=14 Score=21.98 Aligned_cols=14 Identities=29% Similarity=0.705 Sum_probs=10.7
Q ss_pred CCCCc----hhhhhhhhc
Q 033692 1 MGFPS----EVRDIFASR 14 (113)
Q Consensus 1 mg~ps----e~rd~~~~~ 14 (113)
+|+++ ++||+|..+
T Consensus 47 lgl~~~~~~~vrDlw~~~ 64 (89)
T d1uasa1 47 IGLAGSVAVTARDLWAHS 64 (89)
T ss_dssp TTCCTTCEEEEEETTTTE
T ss_pred cCCCCCCcEEEEECcCCC
Confidence 47775 799999764
No 3
>d2bvca1 d.15.9.1 (A:5-104) Glutamine synthetase, N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=12.76 E-value=18 Score=21.79 Aligned_cols=18 Identities=22% Similarity=0.290 Sum_probs=14.9
Q ss_pred hhccchhhhhchhhhhhc
Q 033692 56 TAVPTLVAVRKIPWAKAN 73 (113)
Q Consensus 56 sAipTL~svRm~pWakaN 73 (113)
.++|-+-++|++||...+
T Consensus 66 ~l~PD~~T~~v~Pw~~~~ 83 (100)
T d2bvca1 66 LLLPDPETARIDPFRAAK 83 (100)
T ss_dssp EEEECGGGCEECSSCSSC
T ss_pred EEEEcccccEECCcCCCC
Confidence 467999999999997653
No 4
>d2hbka1 a.60.8.4 (A:421-516) Exosome complex exonuclease RRP6 domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=12.24 E-value=43 Score=19.70 Aligned_cols=35 Identities=9% Similarity=0.114 Sum_probs=26.7
Q ss_pred ccCcchhhhhhhhhh----------ceeeeeeehhHHHHHHHhhh
Q 033692 73 NLNYTGQALIISAVS----------IASYFITVDKTILECARRNA 107 (113)
Q Consensus 73 NlN~TaqALIIs~aa----------~aayFI~aDKtIL~~aRkns 107 (113)
|||+..++|.-.... +..|||..|+++++.|++..
T Consensus 13 ~l~~~~~~l~~~L~~wR~~~Ar~~d~~~~~Vl~d~~L~~iA~~~P 57 (96)
T d2hbka1 13 NIPPEREVLVRELYQWRDLIARRDDESPRFVMPNQLLAALVAYTP 57 (96)
T ss_dssp SCCGGGHHHHHHHHHHHHHHHHHHTCCHHHHCCHHHHHHHHHHCC
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHhCCCceeeeCHHHHHHHHHHCC
Confidence 677777776554322 67899999999999998853
No 5
>d2cpra1 a.60.8.4 (A:483-595) Exosome component 10, EXOSC10 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.13 E-value=27 Score=21.37 Aligned_cols=20 Identities=10% Similarity=0.117 Sum_probs=17.2
Q ss_pred ceeeeeeehhHHHHHHHhhh
Q 033692 88 IASYFITVDKTILECARRNA 107 (113)
Q Consensus 88 ~aayFI~aDKtIL~~aRkns 107 (113)
+..|||..|+++++.|++.-
T Consensus 44 ~p~~~Vl~d~~L~~iA~~~P 63 (113)
T d2cpra1 44 ESYGYVLPNHMMLKIAEELP 63 (113)
T ss_dssp CCHHHHCCHHHHHHHHHHCC
T ss_pred CCcceeeCHHHHHHHHHhCC
Confidence 56789999999999999754
No 6
>d1v0ea2 b.108.1.3 (A:761-910) Endo-alpha-sialidase {Bacteriophage K1F [TaxId: 344021]}
Probab=10.86 E-value=20 Score=25.19 Aligned_cols=13 Identities=31% Similarity=0.394 Sum_probs=11.0
Q ss_pred Ccchhhhhhhhhh
Q 033692 75 NYTGQALIISAVS 87 (113)
Q Consensus 75 N~TaqALIIs~aa 87 (113)
|||+|-||||.--
T Consensus 72 ~pt~QRlIv~GG~ 84 (150)
T d1v0ea2 72 NPAGQRIIFCGGE 84 (150)
T ss_dssp CGGGCEEEEESSS
T ss_pred CCcccEEEEeCCC
Confidence 8999999998643
No 7
>d1ywka1 b.82.1.13 (A:1001-1260) 5-keto-4-deoxyuronate isomerase KduI {Enterococcus faecalis [TaxId: 1351]}
Probab=10.51 E-value=14 Score=27.64 Aligned_cols=15 Identities=33% Similarity=0.612 Sum_probs=13.0
Q ss_pred CCCCchhhhhhhhcc
Q 033692 1 MGFPSEVRDIFASRR 15 (113)
Q Consensus 1 mg~pse~rd~~~~~~ 15 (113)
||=|+|.|++|..|.
T Consensus 218 mGep~eTrhivv~n~ 232 (260)
T d1ywka1 218 MGKPDETKHLVMSNE 232 (260)
T ss_dssp ESSTTSCEEEEECTT
T ss_pred eCCCCceEEEEEECC
Confidence 799999999999743
No 8
>d1f52a1 d.15.9.1 (A:1-100) Glutamine synthetase, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=10.33 E-value=25 Score=21.23 Aligned_cols=17 Identities=12% Similarity=0.135 Sum_probs=14.4
Q ss_pred hhccchhhhhchhhhhh
Q 033692 56 TAVPTLVAVRKIPWAKA 72 (113)
Q Consensus 56 sAipTL~svRm~pWaka 72 (113)
..+|-+-..|++||...
T Consensus 66 ~l~PD~~T~~i~Pw~~~ 82 (100)
T d1f52a1 66 VLMPDASTAVIDPFFAD 82 (100)
T ss_dssp EEEECGGGCEECSSCSS
T ss_pred EEEECCCceEECCcCCC
Confidence 46899999999999753
No 9
>d1o60a_ c.1.10.4 (A:) 3-deoxy-D-manno-octulosonate 8-phosphate synthase (KDO8P synthase) {Haemophilus influenzae [TaxId: 727]}
Probab=10.31 E-value=81 Score=19.44 Aligned_cols=32 Identities=13% Similarity=0.169 Sum_probs=24.5
Q ss_pred CCCccccCc----hHHHHHHHhhHhhHHHHHhhhhH
Q 033692 17 NNSPLIASP----AEDLKAKAANDCVQEGVRAGLKA 48 (113)
Q Consensus 17 ~~~~~i~sp----~~~~k~~~ak~cs~Eg~~aG~Ka 48 (113)
...|+|+-| ..|+-+.+|++-...|..+|+-+
T Consensus 16 ~~~~iIAei~~~~nh~g~l~~AkkLi~~A~~aGad~ 51 (281)
T d1o60a_ 16 KPFVLFGGMNVLESRDMAMQVCEAYVKVTEKLGVPY 51 (281)
T ss_dssp SCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHTCCE
T ss_pred CceEEEEeCCcccCHHHHHHHHHHHHHHHHHhCCCE
Confidence 456888755 56788889999998888888643
No 10
>d1ez4a2 d.162.1.1 (A:163-334) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}
Probab=8.75 E-value=1.3e+02 Score=18.46 Aligned_cols=26 Identities=19% Similarity=0.166 Sum_probs=20.2
Q ss_pred ccCchHHHHHHHhhHhhHHHHHhhhh
Q 033692 22 IASPAEDLKAKAANDCVQEGVRAGLK 47 (113)
Q Consensus 22 i~sp~~~~k~~~ak~cs~Eg~~aG~K 47 (113)
--++.|.+++..+-+-.+|-...|+|
T Consensus 142 ~Ls~~E~~~l~~s~~~l~~~i~~~l~ 167 (171)
T d1ez4a2 142 PLSADELKKMQDSAATLKKVLNDGLA 167 (171)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788888888888778887777766
Done!