Citrus Sinensis ID: 033693

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110---
Protein Sequence
MSQTVVLKVGMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKTGKKTAFWERGKTSTSRIRFEAHRSCSCCLRYQWPVHFVGVGLFLMSYSLVNLL
Secondary Structure (PSIPRED)
ccEEEEEEEEEccHHHHHHHHHHHcccccEEEEEEEccccEEEEEEEccHHHHHHHHHHHcccEEEcccccccHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEEcccHHHHHHHHHHHHccccEEEEEcccccEEEEEEEccHHHHHHHHHHccccEEEccccccccccccEcccccccccccccccEEEEHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MSQTVVLKVGMSCEGCVGAVKRVLgkmdgvetfdidlkEQKVTvkgnvqpdaVLQTVSKTGkktafwergktstsrirFEAHrscscclryqwpvHFVGVGLFLMSYSLVNLL
Flexible Loop (DISEMBL)
msqtvvlkvgmscegcVGAVKRVLGKMDGVETFDidlkeqkvtvkgnvqpdavlqtvsktgkktafwergktstsrirfEAHRSCSCCLRYQWPVHFVGVGLFLMSYSLVNLL
Low Complexity Region (SEG)
MSQTVVLKVGMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKTGKKTAFWERGKTSTSRIRFEAHRSCSCCLRYQWPVHFVGVGLFLMSYSLVNLL
Disordered region (IsUnstruct)
****VVLKVGMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKTGKKTAFWERGKTSTSRIRFEAHRSCSCCLRYQWPVHFVGVGLFLMSYSLVN**
Disordered Region (DISOPRED)
*SQTVVLKVGMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKTGKKTAF*************************QWPVHFVGVGLFLMSYSLVNLL
Disordered Region (DISEMBL)
MSQTVVLKVGMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKTGKKTAFWERGKTSTSRIRFEAHRSCSCCLRYQWPVHFVGVGLFLMSYSLVNLL
Disordered Region (DISPRO)
*SQTVVLKVGMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKTGKKTAFWERGKTSTSRIRFEAHRSCSCCLRYQWPVHFVGVGLFLMSYSLVNLL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHi
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSQTVVLKVGMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKTGKKTAFWERGKTSTSRIRFEAHRSCSCCLRYQWPVHFVGVGLFLMSYSLVNLL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	113	2.2.26 [Sep-21-2011]
Q9TT99	68	Copper transport protein	yes	no	0.513	0.852	0.491	2e-08
O08997	68	Copper transport protein	yes	no	0.513	0.852	0.474	6e-08
Q9XT28	68	Copper transport protein	N/A	no	0.513	0.852	0.474	7e-08
Q3T0E0	68	Copper transport protein	yes	no	0.513	0.852	0.474	7e-08
Q9SZN7	153	Heavy metal-associated is	no	no	0.575	0.424	0.454	1e-07
Q6BK66	250	Superoxide dismutase 1 co	no	no	0.646	0.292	0.315	4e-07
Q9WUC4	68	Copper transport protein	yes	no	0.513	0.852	0.457	5e-07
O00244	68	Copper transport protein	yes	no	0.513	0.852	0.440	3e-06
Q54PZ2	67	Copper transport protein	yes	no	0.513	0.865	0.406	2e-05
Q6BZU2	234	Superoxide dismutase 1 co	no	no	0.725	0.350	0.289	4e-05

>sp|Q9TT99|ATOX1_CANFA Copper transport protein ATOX1 OS=Canis familiaris GN=ATOX1 PE=3 SV=1

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/59 (49%), Positives = 38/59 (64%), Gaps = 1/59 (1%)

Query: 9  VGMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKTGKKTAFW 67
          V M+CEGC  AV RVL K+ GVE FDIDL  +KV +      D +L+T+ KTGK  ++ 
Sbjct: 8  VDMTCEGCSNAVSRVLNKLGGVE-FDIDLPNKKVCINSEHSVDILLETLEKTGKAVSYL 65

Could bind and deliver cytosolic copper to the copper ATPase proteins. May be important in cellular antioxidant defense.
Canis familiaris (taxid: 9615)

>sp|O08997|ATOX1_MOUSE Copper transport protein ATOX1 OS=Mus musculus GN=Atox1 PE=2 SV=1

 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 38/59 (64%), Gaps = 1/59 (1%)

Query: 9  VGMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKTGKKTAFW 67
          V M+CEGC  AV RVL K+ GVE F+IDL  +KV +      D +L T++KTGK  ++ 
Sbjct: 8  VDMTCEGCAEAVSRVLNKLGGVE-FNIDLPNKKVCIDSEHSSDTLLATLNKTGKAVSYL 65

Could bind and deliver cytosolic copper to the copper ATPase proteins. May be important in cellular antioxidant defense.

Mus musculus (taxid: 10090)

>sp|Q9XT28|ATOX1_SHEEP Copper transport protein ATOX1 OS=Ovis aries GN=ATOX1 PE=3 SV=1

 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 38/59 (64%), Gaps = 1/59 (1%)

Query: 9  VGMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKTGKKTAFW 67
          V M+CEGC  AV RVL K+ GV+ FDIDL  +KV +      D +L+T+ KTGK  ++ 
Sbjct: 8  VDMTCEGCSNAVTRVLNKLGGVQ-FDIDLPNKKVCINSEHSVDTLLETLGKTGKAVSYL 65

Could bind and deliver cytosolic copper to the copper ATPase proteins. May be important in cellular antioxidant defense.

Ovis aries (taxid: 9940)

>sp|Q3T0E0|ATOX1_BOVIN Copper transport protein ATOX1 OS=Bos taurus GN=ATOX1 PE=3 SV=1

 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 38/59 (64%), Gaps = 1/59 (1%)

Query: 9  VGMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKTGKKTAFW 67
          V M+CEGC  AV RVL K+ GV+ FDIDL  +KV +      D +L+T+ KTGK  ++ 
Sbjct: 8  VDMTCEGCSNAVTRVLNKLGGVQ-FDIDLPNKKVCINSEHSVDTLLETLGKTGKAVSYL 65

Could bind and deliver cytosolic copper to the copper ATPase proteins. May be important in cellular antioxidant defense.

Bos taurus (taxid: 9913)

>sp|Q9SZN7|HIP26_ARATH Heavy metal-associated isoprenylated plant protein 26 OS=Arabidopsis thaliana GN=HIPP26 PE=1 SV=1

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 1/66 (1%)

Query: 3  QTVVLKVGMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVS-KTG 61
          QTV +KV M CEGC   V+R +  M GV +  ++ K  KVTV G V P+ V+  +S +TG
Sbjct: 26 QTVEIKVKMDCEGCERKVRRSVEGMKGVSSVTLEPKAHKVTVVGYVDPNKVVARMSHRTG 85

Query: 62 KKTAFW 67
          KK   W
Sbjct: 86 KKVELW 91

Heavy-metal-binding protein. Binds lead, cadmium and copper. May be involved in heavy-metal transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6BK66|CCS1_DEBHA Superoxide dismutase 1 copper chaperone OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=CCS1 PE=3 SV=2

 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 40/73 (54%)

Query: 5  VVLKVGMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKTGKKT 64
          +V  V M C+ CV +V   L  ++G+  +DIDLK   VT +G+V P  +++ +  TGK  
Sbjct: 7  IVFAVPMECQSCVDSVSSSLKSLNGISKYDIDLKSNLVTTEGSVPPSEIVKAIQSTGKDA 66

Query: 65 AFWERGKTSTSRI 77
               G  +++ +
Sbjct: 67 IIRGTGAPNSAAV 79

Copper chaperone for superoxide dismutase 1 (SOD1). Binds copper ions and delivers them specifically to SOD1.

Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) (taxid: 284592)

>sp|Q9WUC4|ATOX1_RAT Copper transport protein ATOX1 OS=Rattus norvegicus GN=Atox1 PE=1 SV=1

 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 1/59 (1%)

Query: 9  VGMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKTGKKTAFW 67
          V M+C GC  AV RVL K+ GVE F+IDL  +KV ++     D +L T++KTGK  ++ 
Sbjct: 8  VDMTCGGCAEAVSRVLNKLGGVE-FNIDLPNKKVCIESEHSSDILLATLNKTGKAVSYL 65

Could bind and deliver cytosolic copper to the copper ATPase proteins. May be important in cellular antioxidant defense.

Rattus norvegicus (taxid: 10116)

>sp|O00244|ATOX1_HUMAN Copper transport protein ATOX1 OS=Homo sapiens GN=ATOX1 PE=1 SV=1

 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 1/59 (1%)

Query: 9  VGMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKTGKKTAFW 67
          V M+C GC  AV RVL K+ GV+ +DIDL  +KV ++     D +L T+ KTGK  ++ 
Sbjct: 8  VDMTCGGCAEAVSRVLNKLGGVK-YDIDLPNKKVCIESEHSMDTLLATLKKTGKTVSYL 65

Could bind and deliver cytosolic copper to the copper ATPase proteins. May be important in cellular antioxidant defense.

Homo sapiens (taxid: 9606)

>sp|Q54PZ2|ATOX1_DICDI Copper transport protein ATOX1 homolog OS=Dictyostelium discoideum GN=atox1 PE=3 SV=2

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 1/59 (1%)

Query: 9  VGMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGN-VQPDAVLQTVSKTGKKTAF 66
          V M+C GC  AV  +L K+DGV    IDL+ +KV+ + + +  D +L+ + KTGKK + 
Sbjct: 7  VDMTCGGCSKAVNAILSKIDGVSNIQIDLENKKVSCESSKMGADELLKNIQKTGKKCSI 65

Could bind and deliver cytosolic copper to the copper ATPase proteins. May be important in cellular antioxidant defense.

Dictyostelium discoideum (taxid: 44689)

>sp|Q6BZU2|CCS1_YARLI Superoxide dismutase 1 copper chaperone OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=CCS1 PE=3 SV=1

 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 1/83 (1%)

Query: 1  MSQTVVLKVGMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKT 60
          MS T    V + CE C  +VK+ L  + G+E+ D  L +Q ++V G   P  +++ V   
Sbjct: 1  MSFTTTFAVPLECESCCDSVKQALANVQGIESVDCKLVDQLISVTGTSAPSQIVKAVQNI 60

Query: 61 GKKTAFWERGKTSTSRI-RFEAH 82
          GK       G+ +++ +   E+H
Sbjct: 61 GKDAIVRGTGQPNSAAVCILESH 83

Copper chaperone for superoxide dismutase 1 (SOD1). Binds copper ions and delivers them specifically to SOD1.

Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	113
119367485	88	putative copper chaperone [Citrus hybrid	0.672	0.863	0.894	9e-31
47176684	85	copper chaperone [Populus alba x Populus	0.601	0.8	0.955	3e-30
350538525	81	copper chaperone [Solanum lycopersicum]	0.672	0.938	0.855	5e-30
225449673	86	PREDICTED: copper transport protein ATOX	0.601	0.790	0.926	3e-29
326523151	130	predicted protein [Hordeum vulgare subsp	0.681	0.592	0.792	4e-29
290886187	86	copper transport protein ATOX1 [Hevea br	0.601	0.790	0.926	5e-29
326518804	114	predicted protein [Hordeum vulgare subsp	0.681	0.675	0.792	6e-29
18408466	106	homolog of anti-oxidant 1 [Arabidopsis t	0.646	0.688	0.837	8e-29
356535571	81	PREDICTED: copper transport protein ATOX	0.663	0.925	0.855	8e-29
224110212	72	predicted protein [Populus trichocarpa]	0.584	0.916	0.954	2e-28

>gi|119367485|gb|ABL67657.1| putative copper chaperone [Citrus hybrid cultivar]

 Score =  137 bits (344), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 68/76 (89%), Positives = 70/76 (92%)

Query: 1  MSQTVVLKVGMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKT 60
          MSQTVVLKVGMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQP AVLQTVSKT
Sbjct: 1  MSQTVVLKVGMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPGAVLQTVSKT 60

Query: 61 GKKTAFWERGKTSTSR 76
          GKKTAFWE  K + + 
Sbjct: 61 GKKTAFWEEEKPAPAE 76

Source: Citrus hybrid cultivar

Species: Citrus hybrid cultivar

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|47176684|gb|AAT12488.1| copper chaperone [Populus alba x Populus tremula var. glandulosa] gi|118484492|gb|ABK94121.1| unknown [Populus trichocarpa] gi|118485074|gb|ABK94400.1| unknown [Populus trichocarpa] gi|118487941|gb|ABK95792.1| unknown [Populus trichocarpa] gi|118488816|gb|ABK96218.1| unknown [Populus trichocarpa x Populus deltoides] gi|118489538|gb|ABK96571.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  135 bits (340), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 65/68 (95%), Positives = 68/68 (100%)

Query: 1  MSQTVVLKVGMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKT 60
          MSQTVVLKVGMSCEGCVGAVKRVLGKM+GVE++DIDLKEQKVTVKGNVQPDAVLQTVSKT
Sbjct: 1  MSQTVVLKVGMSCEGCVGAVKRVLGKMEGVESYDIDLKEQKVTVKGNVQPDAVLQTVSKT 60

Query: 61 GKKTAFWE 68
          GKKTAFWE
Sbjct: 61 GKKTAFWE 68

Source: Populus alba x Populus tremula var. glandulosa

Species: Populus alba x Populus glandulosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350538525|ref|NP_001234347.1| copper chaperone [Solanum lycopersicum] gi|30039180|gb|AAP06757.1| copper chaperone [Solanum lycopersicum] gi|170773918|gb|ACB32235.1| copper chaperone [Solanum chacoense]

 Score =  134 bits (338), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 65/76 (85%), Positives = 72/76 (94%)

Query: 1  MSQTVVLKVGMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKT 60
          MSQTVVLKVGMSCEGCVGAVKRVLGKM+GVETFDIDLKEQKVTVKGNVQPDAVL+TVSKT
Sbjct: 1  MSQTVVLKVGMSCEGCVGAVKRVLGKMEGVETFDIDLKEQKVTVKGNVQPDAVLKTVSKT 60

Query: 61 GKKTAFWERGKTSTSR 76
          GK T+FWE G+++ + 
Sbjct: 61 GKPTSFWEAGESAQTE 76

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225449673|ref|XP_002264332.1| PREDICTED: copper transport protein ATOX1 [Vitis vinifera] gi|296090431|emb|CBI40250.3| unnamed protein product [Vitis vinifera]

 Score =  132 bits (331), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 63/68 (92%), Positives = 68/68 (100%)

Query: 1  MSQTVVLKVGMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKT 60
          M+QTVVLKVGMSCEGCVGAVKRVLGKM+GVE+FDIDLKEQKVTVKGNVQPDAVL+TVSKT
Sbjct: 1  MAQTVVLKVGMSCEGCVGAVKRVLGKMEGVESFDIDLKEQKVTVKGNVQPDAVLKTVSKT 60

Query: 61 GKKTAFWE 68
          GKKT+FWE
Sbjct: 61 GKKTSFWE 68

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326523151|dbj|BAJ88616.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  132 bits (331), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 61/77 (79%), Positives = 70/77 (90%)

Query: 1   MSQTVVLKVGMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKT 60
           MSQTV L+VGMSCEGCVGAVKRVLGKM+GVE+FD+D+KEQKVTVKGNV PDAVLQTVSKT
Sbjct: 52  MSQTVELRVGMSCEGCVGAVKRVLGKMEGVESFDVDIKEQKVTVKGNVTPDAVLQTVSKT 111

Query: 61  GKKTAFWERGKTSTSRI 77
           GKKT+FWE   ++ S +
Sbjct: 112 GKKTSFWEAEPSAASAV 128

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|290886187|gb|ADD69807.1| copper transport protein ATOX1 [Hevea brasiliensis]

 Score =  131 bits (330), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 63/68 (92%), Positives = 67/68 (98%)

Query: 1  MSQTVVLKVGMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKT 60
          MSQTVVLKVGMSCEGCVGAVKRVLGKM+GVE++DIDLKEQKVTVKGNVQP+AVLQTVSKT
Sbjct: 1  MSQTVVLKVGMSCEGCVGAVKRVLGKMEGVESYDIDLKEQKVTVKGNVQPEAVLQTVSKT 60

Query: 61 GKKTAFWE 68
          GKKT FWE
Sbjct: 61 GKKTTFWE 68

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326518804|dbj|BAJ92563.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  131 bits (329), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 61/77 (79%), Positives = 70/77 (90%)

Query: 1   MSQTVVLKVGMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKT 60
           MSQTV L+VGMSCEGCVGAVKRVLGKM+GVE+FD+D+KEQKVTVKGNV PDAVLQTVSKT
Sbjct: 36  MSQTVELRVGMSCEGCVGAVKRVLGKMEGVESFDVDIKEQKVTVKGNVTPDAVLQTVSKT 95

Query: 61  GKKTAFWERGKTSTSRI 77
           GKKT+FWE   ++ S +
Sbjct: 96  GKKTSFWEAEPSAASAV 112

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18408466|ref|NP_564870.1| homolog of anti-oxidant 1 [Arabidopsis thaliana] gi|14532548|gb|AAK64002.1| At1g66240/T6J19_6 [Arabidopsis thaliana] gi|18655401|gb|AAL76156.1| At1g66240/T6J19_6 [Arabidopsis thaliana] gi|332196360|gb|AEE34481.1| homolog of anti-oxidant 1 [Arabidopsis thaliana]

 Score =  130 bits (328), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 62/74 (83%), Positives = 71/74 (95%), Gaps = 1/74 (1%)

Query: 1   MSQTVVLKVGMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKT 60
           MSQTVVL+V M+CEGCVGAVKRVLGKM+GVE+FD+D+KEQKVTVKGNVQPDAVLQTV+KT
Sbjct: 31  MSQTVVLRVAMTCEGCVGAVKRVLGKMEGVESFDVDIKEQKVTVKGNVQPDAVLQTVTKT 90

Query: 61  GKKTAFWE-RGKTS 73
           GKKTAFWE  G+T+
Sbjct: 91  GKKTAFWEAEGETA 104

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535571|ref|XP_003536318.1| PREDICTED: copper transport protein ATOX1-like [Glycine max]

 Score =  130 bits (328), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 65/76 (85%), Positives = 70/76 (92%), Gaps = 1/76 (1%)

Query: 1  MSQTVVLKVGMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKT 60
          MSQTVVLKVGMSCEGCVGAVKRVLGK+DGVE++DIDLKEQKV VKGNVQPD VLQTVSKT
Sbjct: 1  MSQTVVLKVGMSCEGCVGAVKRVLGKLDGVESYDIDLKEQKVVVKGNVQPDTVLQTVSKT 60

Query: 61 GKKTAFWERGKTSTSR 76
          GKKT FWE G+ +TS 
Sbjct: 61 GKKTTFWE-GEAATSE 75

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224110212|ref|XP_002315448.1| predicted protein [Populus trichocarpa] gi|222864488|gb|EEF01619.1| predicted protein [Populus trichocarpa]

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 63/66 (95%), Positives = 66/66 (100%)

Query: 3  QTVVLKVGMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKTGK 62
          QTVVLKVGMSCEGCVGAVKRVLGKM+GVE++DIDLKEQKVTVKGNVQPDAVLQTVSKTGK
Sbjct: 1  QTVVLKVGMSCEGCVGAVKRVLGKMEGVESYDIDLKEQKVTVKGNVQPDAVLQTVSKTGK 60

Query: 63 KTAFWE 68
          KTAFWE
Sbjct: 61 KTAFWE 66

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	113
TAIR|locus:2205288	106	ATX1 "homolog of anti-oxidant	0.646	0.688	0.837	2.7e-29
TAIR|locus:2078461	121	CCH "copper chaperone" [Arabid	0.592	0.553	0.835	4.5e-27
TAIR|locus:2180265	352	AT5G27690 [Arabidopsis thalian	0.566	0.181	0.468	1.5e-12
TAIR|locus:2157457	149	HIPP21 "heavy metal associated	0.575	0.436	0.446	3.1e-12
TAIR|locus:2049731	259	NAKR2 "AT2G37390" [Arabidopsis	0.566	0.247	0.461	3.1e-11
TAIR|locus:2026336	152	HIPP20 "heavy metal associated	0.575	0.427	0.446	3.5e-11
TAIR|locus:2135277	158	AT4G39700 [Arabidopsis thalian	0.575	0.411	0.476	3.5e-11
TAIR|locus:4515103273	166	AT3G56891 [Arabidopsis thalian	0.557	0.379	0.460	3.5e-11
TAIR|locus:2181718	319	NAKR1 "SODIUM POTASSIUM ROOT D	0.566	0.200	0.476	5.4e-11
TAIR|locus:2202265	159	AT1G06330 "AT1G06330" [Arabido	0.584	0.415	0.439	7.4e-11

TAIR|locus:2205288 ATX1 "homolog of anti-oxidant 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
 Identities = 62/74 (83%), Positives = 71/74 (95%)

Query:     1 MSQTVVLKVGMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKT 60
             MSQTVVL+V M+CEGCVGAVKRVLGKM+GVE+FD+D+KEQKVTVKGNVQPDAVLQTV+KT
Sbjct:    31 MSQTVVLRVAMTCEGCVGAVKRVLGKMEGVESFDVDIKEQKVTVKGNVQPDAVLQTVTKT 90

Query:    61 GKKTAFWE-RGKTS 73
             GKKTAFWE  G+T+
Sbjct:    91 GKKTAFWEAEGETA 104

GO:0005737 "cytoplasm" evidence=ISM

GO:0005886 "plasma membrane" evidence=ISM

GO:0030001 "metal ion transport" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0000785 "chromatin" evidence=IDA

TAIR|locus:2078461 CCH "copper chaperone" [Arabidopsis thaliana (taxid:3702)]

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 56/67 (83%), Positives = 65/67 (97%)

Query:     1 MSQTVVLKVGMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKT 60
             M+QTVVLKVGMSC+GCVGAV RVLGKM+GVE+FDID+KEQKVTVKGNV+P+AV QTVSKT
Sbjct:     1 MAQTVVLKVGMSCQGCVGAVNRVLGKMEGVESFDIDIKEQKVTVKGNVEPEAVFQTVSKT 60

Query:    61 GKKTAFW 67
             GKKT++W
Sbjct:    61 GKKTSYW 67

GO:0030001 "metal ion transport" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0009651 "response to salt stress" evidence=IEP;RCA

GO:0009507 "chloroplast" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006816 "calcium ion transport" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

GO:0000302 "response to reactive oxygen species" evidence=IGI

GO:0006827 "high-affinity iron ion transport" evidence=IGI

GO:0006878 "cellular copper ion homeostasis" evidence=IMP;TAS

GO:0007568 "aging" evidence=IEP

GO:0016531 "copper chaperone activity" evidence=ISS

TAIR|locus:2180265 AT5G27690 [Arabidopsis thaliana (taxid:3702)]

 Score = 172 (65.6 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 30/64 (46%), Positives = 46/64 (71%)

Query:     4 TVVLKVGMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKTGKK 63
             T VL+V + CEGC   +K++L K+DGV T +ID+K+QKVTV GNV+P+ +++ + K G+ 
Sbjct:    31 TWVLRVSIHCEGCKRKIKKILSKIDGVYTTNIDVKQQKVTVIGNVEPEILIKKIMKAGRH 90

Query:    64 TAFW 67
                W
Sbjct:    91 AELW 94

GO:0005634 "nucleus" evidence=ISM

GO:0030001 "metal ion transport" evidence=IEA;ISS

GO:0046872 "metal ion binding" evidence=IEA;ISS

TAIR|locus:2157457 HIPP21 "heavy metal associated isoprenylated plant protein 21" [Arabidopsis thaliana (taxid:3702)]

 Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 29/65 (44%), Positives = 45/65 (69%)

Query:     3 QTVVLKVGMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKTGK 62
             QTV +KV M C+GC   V+ V+ +M GV++ +++ K+ ++TV G+V P+ VL+ V  TGK
Sbjct:    26 QTVDIKVKMDCDGCERRVRNVVRRMKGVKSVEVNRKQSRITVNGHVDPNKVLKRVKSTGK 85

Query:    63 KTAFW 67
             K  FW
Sbjct:    86 KAEFW 90

GO:0005634 "nucleus" evidence=ISM

GO:0030001 "metal ion transport" evidence=IEA;IGI

GO:0046872 "metal ion binding" evidence=IEA;ISS

TAIR|locus:2049731 NAKR2 "AT2G37390" [Arabidopsis thaliana (taxid:3702)]

 Score = 156 (60.0 bits), Expect = 3.1e-11, P = 3.1e-11
 Identities = 30/65 (46%), Positives = 42/65 (64%)

Query:     3 QTVVLKVGMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKTGK 62
             Q VVLKV + C GC G V++ L +M GV +F+ID   +KVTV G++ P  +L ++SK  K
Sbjct:   181 QVVVLKVSLHCRGCEGKVRKHLARMQGVTSFNIDFAAKKVTVTGDITPLEILDSISKV-K 239

Query:    63 KTAFW 67
                FW
Sbjct:   240 NAQFW 244

GO:0005575 "cellular_component" evidence=ND

GO:0030001 "metal ion transport" evidence=IEA;ISS

GO:0046872 "metal ion binding" evidence=IEA;ISS

TAIR|locus:2026336 HIPP20 "heavy metal associated isoprenylated plant protein 20" [Arabidopsis thaliana (taxid:3702)]

 Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 29/65 (44%), Positives = 41/65 (63%)

Query:     3 QTVVLKVGMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKTGK 62
             QTV +KV M C+GC   VK  +  M GV++ +++ K  KVTV G V+P  VL+ + +TGK
Sbjct:    28 QTVNIKVKMDCDGCERRVKNAVSSMKGVKSVEVNRKIHKVTVSGYVEPKKVLKRIERTGK 87

Query:    63 KTAFW 67
             K   W
Sbjct:    88 KAEIW 92

GO:0005634 "nucleus" evidence=ISM

GO:0030001 "metal ion transport" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA;ISS

TAIR|locus:2135277 AT4G39700 [Arabidopsis thaliana (taxid:3702)]

 Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 31/65 (47%), Positives = 39/65 (60%)

Query:     3 QTVVLKVGMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKTGK 62
             QTV LKV M C+GCV  +K  L  + GV+T +I+ K+QKVTV G      VL+    TGK
Sbjct:    32 QTVELKVRMDCDGCVLKIKNSLSSLKGVKTVEINKKQQKVTVSGYADASKVLKKAKATGK 91

Query:    63 KTAFW 67
             K   W
Sbjct:    92 KAEIW 96

GO:0005737 "cytoplasm" evidence=ISM

GO:0030001 "metal ion transport" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA;ISS

TAIR|locus:4515103273 AT3G56891 [Arabidopsis thaliana (taxid:3702)]

 Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 29/63 (46%), Positives = 41/63 (65%)

Query:     5 VVLKVGMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKTGKKT 64
             V L V M C+GC   V+R + K+DGV+T +ID+  QKVTV G V  + VL+ V +TG+  
Sbjct:    18 VELLVDMDCKGCEKKVRRAISKLDGVDTVEIDVDRQKVTVTGYVDREEVLKMVKRTGRTA 77

Query:    65 AFW 67
              +W
Sbjct:    78 EYW 80

GO:0005886 "plasma membrane" evidence=ISM

GO:0030001 "metal ion transport" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

TAIR|locus:2181718 NAKR1 "SODIUM POTASSIUM ROOT DEFECTIVE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 157 (60.3 bits), Expect = 5.4e-11, P = 5.4e-11
 Identities = 31/65 (47%), Positives = 43/65 (66%)

Query:     3 QTVVLKVGMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKTGK 62
             Q VVL+V + C+GC G VK+ L K+ GV +++ID   +KVTV G+V P  VL ++SK  K
Sbjct:   250 QVVVLRVSLHCKGCAGKVKKHLSKLKGVTSYNIDFAAKKVTVTGDVTPLTVLASISKV-K 308

Query:    63 KTAFW 67
                FW
Sbjct:   309 NAQFW 313

GO:0009507 "chloroplast" evidence=ISM

GO:0030001 "metal ion transport" evidence=IEA;ISS

GO:0046872 "metal ion binding" evidence=IEA;ISS;IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0009908 "flower development" evidence=IMP

GO:0010015 "root morphogenesis" evidence=IMP

GO:0010233 "phloem transport" evidence=IMP

GO:0055078 "sodium ion homeostasis" evidence=IMP

TAIR|locus:2202265 AT1G06330 "AT1G06330" [Arabidopsis thaliana (taxid:3702)]

 Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
 Identities = 29/66 (43%), Positives = 40/66 (60%)

Query:     3 QTVVLKVGMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKTGK 62
             QT+ ++V M C GC   VK  L KM GV+  +ID+ +QKVTV G      VL+ V KTG+
Sbjct:    11 QTIEMRVHMDCVGCESRVKNALQKMRGVDAVEIDMVQQKVTVTGYADQKKVLKKVRKTGR 70

Query:    63 KTAFWE 68
             +   W+
Sbjct:    71 RAELWQ 76

GO:0005507 "copper ion binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006825 "copper ion transport" evidence=ISS

GO:0030001 "metal ion transport" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	T6J19.6	ATX1 (ARABIDOPSIS HOMOLOG OF ANTI-OXIDANT 1); metal ion binding; ARABIDOPSIS HOMOLOG OF ANTI-OXIDANT 1 (ATX1); FUNCTIONS IN- metal ion binding; INVOLVED IN- metal ion transport; LOCATED IN- endomembrane system; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Heavy metal transport/detoxification protein (InterPro-IPR006121); BEST Arabidopsis thaliana protein match is- CCH (COPPER CHAPERONE); copper chaperone (TAIR-AT3G56240.1); Has 1008 Blast hits to 970 proteins in 184 species- Archae - 4; Bacteria - 117; Metazoa - 115; Fungi - 131; Pl [...] (106 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	HMA5	HMA5 (HEAVY METAL ATPASE 5); ATPase, coupled to transmembrane movement of ions, phosphorylative [...] (995 aa)					•		•		0.992
	RAN1	RAN1 (RESPONSIVE-TO-ANTAGONIST 1); ATPase, coupled to transmembrane movement of ions, phosphory [...] (1001 aa)					•		•		0.950
	COX17	ATCOX17; copper chaperone; Encodes protein similar to yeast COX17, a copper-binding protein tha [...] (74 aa)							•		0.821
	COPT5	COPT5; copper ion transmembrane transporter/ high affinity copper ion transmembrane transporter [...] (146 aa)				•			•		0.734
	SPL7	SPL7 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 7); DNA binding / transcription factor; Encodes a [...] (801 aa)							•		0.679
	IRT3	IRT3; cation transmembrane transporter/ metal ion transmembrane transporter; member of Fe(II) t [...] (425 aa)							•		0.677
	COPT1	COPT1 (copper transporter 1); copper ion transmembrane transporter; encodes a putative copper t [...] (170 aa)							•		0.675
	ATTRX2	ATTRX2 (THIOREDOXIN 2); oxidoreductase, acting on sulfur group of donors, disulfide as acceptor [...] (133 aa)				•					0.653
	AT3G47833	unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biolog [...] (93 aa)				•					0.597
	AT1G65820	microsomal glutathione s-transferase, putative; microsomal glutathione s-transferase, putative; [...] (194 aa)				•					0.583

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	113
cd00371	63	cd00371, HMA, Heavy-metal-associated domain (HMA)	4e-17
pfam00403	62	pfam00403, HMA, Heavy-metal-associated domain	2e-13
COG2608	71	COG2608, CopZ, Copper chaperone [Inorganic ion tra	1e-10
PLN02957	238	PLN02957, PLN02957, copper, zinc superoxide dismut	1e-08
PRK10671	834	PRK10671, copA, copper exporting ATPase; Provision	6e-08
PRK10671	834	PRK10671, copA, copper exporting ATPase; Provision	1e-07
TIGR00003	66	TIGR00003, TIGR00003, copper ion binding protein	3e-06
TIGR02052	92	TIGR02052, MerP, mercuric transport protein peripl	3e-04
COG2217	713	COG2217, ZntA, Cation transport ATPase [Inorganic	0.001

>gnl|CDD|238219 cd00371, HMA, Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones

 Score = 68.8 bits (169), Expect = 4e-17
 Identities = 23/61 (37%), Positives = 38/61 (62%), Gaps = 3/61 (4%)

Query: 6  VLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGN--VQPDAVLQTVSKTGK 62
           L V GM+C GCV  +++ L K+ GVE+ ++DL+  K TV+ +  V P+ +L+ +   G 
Sbjct: 1  ELSVEGMTCAGCVSKIEKALEKLPGVESVEVDLETGKATVEYDPEVSPEELLEAIEDAGY 60

Query: 63 K 63
          K
Sbjct: 61 K 61

HMA domain contains two cysteine residues that are important in binding and transfer of metal ions, such as copper, cadmium, cobalt and zinc. In the case of copper, stoichiometry of binding is one Cu+ ion per binding domain. Repeats of the HMA domain in copper chaperone has been associated with Menkes/Wilson disease due to binding of multiple copper ions. Length = 63

>gnl|CDD|215902 pfam00403, HMA, Heavy-metal-associated domain

 Score = 59.9 bits (146), Expect = 2e-13
 Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 3/62 (4%)

Query: 5  VVLKVGMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGN---VQPDAVLQTVSKTG 61
           +   GM+C GC   V++ L K+ GV +  +DL+  KVTV G+   ++ + + + + K G
Sbjct: 1  TLRVPGMTCAGCAKKVEKALSKLPGVSSVSVDLETGKVTVTGDPDPLKLEKLKKAIEKAG 60

Query: 62 KK 63
           +
Sbjct: 61 YE 62

Length = 62

>gnl|CDD|225328 COG2608, CopZ, Copper chaperone [Inorganic ion transport and metabolism]

 Score = 52.8 bits (127), Expect = 1e-10
 Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 3  QTVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVK---GNVQPDAVLQTVS 58
              LKV GM+C  CV  V++ L ++DGV + D+DL++   TV      V  +A+++ + 
Sbjct: 2  MKTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDSNKVDIEAIIEAIE 61

Query: 59 KTGKKTAFWE 68
            G K    +
Sbjct: 62 DAGYKVEEIK 71

Length = 71

>gnl|CDD|215516 PLN02957, PLN02957, copper, zinc superoxide dismutase

 Score = 50.5 bits (121), Expect = 1e-08
 Identities = 23/55 (41%), Positives = 33/55 (60%)

Query: 9  VGMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKTGKK 63
          V M CEGCV AVK  L  ++GV+  ++DL  Q V V G+    A+   + +TG+K
Sbjct: 12 VDMKCEGCVAAVKNKLETLEGVKAVEVDLSNQVVRVLGSSPVKAMTAALEQTGRK 66

Length = 238

>gnl|CDD|182635 PRK10671, copA, copper exporting ATPase; Provisional

 Score = 49.0 bits (117), Expect = 6e-08
 Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 3/62 (4%)

Query: 1  MSQTVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSK 59
          MSQT+ L + G+SC  CV  VK  L +   VE  D+ + E  VT  G    +A+++T+ +
Sbjct: 1  MSQTIDLTLDGLSCGHCVKRVKESLEQRPDVEQADVSITEAHVT--GTASAEALIETIKQ 58

Query: 60 TG 61
           G
Sbjct: 59 AG 60

Length = 834

>gnl|CDD|182635 PRK10671, copA, copper exporting ATPase; Provisional

 Score = 47.8 bits (114), Expect = 1e-07
 Identities = 19/52 (36%), Positives = 27/52 (51%)

Query: 10  GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKTG 61
           GMSC  CV  V+  L  + GV    ++L E+   V G+  P  ++Q V K G
Sbjct: 107 GMSCASCVSRVQNALQSVPGVTQARVNLAERTALVMGSASPQDLVQAVEKAG 158

Length = 834

>gnl|CDD|188014 TIGR00003, TIGR00003, copper ion binding protein

 Score = 41.4 bits (97), Expect = 3e-06
 Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 3/55 (5%)

Query: 10 GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVK---GNVQPDAVLQTVSKTG 61
          GMSC  CV  +++ +G+++GV    + L+++KV V+    NV    + + +   G
Sbjct: 8  GMSCNHCVDKIEKFVGEIEGVSKVKVQLEKEKVVVEFDAPNVSATEICEAILDAG 62

This model describes an apparently copper-specific subfamily of the metal-binding domain HMA (pfam00403). Closely related sequences outside this model include mercury resistance proteins and repeated domains of eukaryotic eukaryotic copper transport proteins. Members of this family are strictly prokaryotic. The model identifies both small proteins consisting of just this domain and N-terminal regions of cation (probably copper) transporting ATPases [Transport and binding proteins, Cations and iron carrying compounds]. Length = 66

>gnl|CDD|131107 TIGR02052, MerP, mercuric transport protein periplasmic component

 Score = 36.6 bits (84), Expect = 3e-04
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 6/54 (11%)

Query: 2  SQTVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTV-----KGNVQ 49
          +QTV L+V GM+C  C   V+  L K+DGV   ++  K +   V     K NV+
Sbjct: 22 TQTVTLEVPGMTCVACPITVETALQKVDGVSKAEVTFKTKLAVVTFDDEKTNVK 75

This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403) [Cellular processes, Detoxification]. Length = 92

>gnl|CDD|225127 COG2217, ZntA, Cation transport ATPase [Inorganic ion transport and metabolism]

 Score = 36.8 bits (86), Expect = 0.001
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 6/64 (9%)

Query: 3  QTVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQ----PDAVLQTV 57
          +   L V GM+C  C   ++  L K+ GVE   ++L  ++ TV  + +    P  ++  V
Sbjct: 2  RETSLSVEGMTCAACASRIE-ALNKLPGVEEARVNLATERATVVYDPEEVDLPADIVAAV 60

Query: 58 SKTG 61
           K G
Sbjct: 61 EKAG 64

Length = 713

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	113
PF00403	62	HMA: Heavy-metal-associated domain; InterPro: IPR0	99.53
COG2608	71	CopZ Copper chaperone [Inorganic ion transport and	99.43
PRK10671	834	copA copper exporting ATPase; Provisional	99.09
KOG4656	247	consensus Copper chaperone for superoxide dismutas	98.88
KOG0207	951	consensus Cation transport ATPase [Inorganic ion t	98.83
KOG1603	73	consensus Copper chaperone [Inorganic ion transpor	98.73
COG2217	713	ZntA Cation transport ATPase [Inorganic ion transp	98.63
KOG0207	951	consensus Cation transport ATPase [Inorganic ion t	98.54
PLN02957	238	copper, zinc superoxide dismutase	98.46
TIGR00003	68	copper ion binding protein. This model describes a	98.24
PRK11033	741	zntA zinc/cadmium/mercury/lead-transporting ATPase	97.64
PRK10671	834	copA copper exporting ATPase; Provisional	97.63
PRK13748	561	putative mercuric reductase; Provisional	93.71
TIGR02052	92	MerP mercuric transport protein periplasmic compon	90.62
PF01206	70	TusA: Sulfurtransferase TusA; InterPro: IPR001455	86.78
PRK11018	78	hypothetical protein; Provisional	81.06

>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures

Probab=99.53  E-value=2.5e-13  Score=66.20  Aligned_cols=58  Identities=34%  Similarity=0.741  Sum_probs=52.9

Q ss_pred             EEEe-CCcChhhHHHHHHHHhCCCCeeEEEEEecCCEEEEE---ecCCHHHHHHHHHhcCCc
Q 033693            6 VLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVK---GNVQPDAVLQTVSKTGKK   63 (113)
Q Consensus         6 ~~~i-g~~c~~c~~~i~~~~~~~~gv~~~~~~~~~~~~~v~---~~~~~~~i~~~i~~~g~~   63 (113)
                      +|.+ ||+|++|++++++++.+++||.++.+|+.++++.+.   ....++++.+.+++.||+
T Consensus         1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~~~Gy~   62 (62)
T PF00403_consen    1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIEKAGYE   62 (62)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHHHTTSE
T ss_pred             CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHHHhCcC
Confidence            4789 999999999999999999999999999999999998   235679999999999984

These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....

>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]

Probab=99.43  E-value=4.7e-12  Score=63.13  Aligned_cols=63  Identities=35%  Similarity=0.677  Sum_probs=56.6

Q ss_pred             eEEEEEe-CCcChhhHHHHHHHHhCCCCeeEEEEEecCCEEEEE--e-cCCHHHHHHHHHhcCCceE
Q 033693            3 QTVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVK--G-NVQPDAVLQTVSKTGKKTA   65 (113)
Q Consensus         3 ~~~~~~i-g~~c~~c~~~i~~~~~~~~gv~~~~~~~~~~~~~v~--~-~~~~~~i~~~i~~~g~~~~   65 (113)
                      .+..+++ ||+|.+|+..++++|++++|+..+.+++..+...+.  + ....+++.+++..+||...
T Consensus         2 ~~~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~~~~~~~~i~~ai~~aGy~~~   68 (71)
T COG2608           2 MKTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDSNKVDIEAIIEAIEDAGYKVE   68 (71)
T ss_pred             ceEEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcCCcCCHHHHHHHHHHcCCCee
Confidence            3568999 999999999999999999999999999999777776  3 5789999999999999864

>PRK10671 copA copper exporting ATPase; Provisional

Probab=99.09  E-value=1.7e-09  Score=75.85  Aligned_cols=64  Identities=33%  Similarity=0.596  Sum_probs=56.0

Q ss_pred             CceEEEEEe-CCcChhhHHHHHHHHhCCCCeeEEEEEecCCEEEEEecCCHHHHHHHHHhcCCceEE
Q 033693            1 MSQTVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKTGKKTAF   66 (113)
Q Consensus         1 ~~~~~~~~i-g~~c~~c~~~i~~~~~~~~gv~~~~~~~~~~~~~v~~~~~~~~i~~~i~~~g~~~~~   66 (113)
                      |+++..+++ ||+|.+|+.++++++++++|+..+.+++.  +..+....+.+.+.+.+++.||....
T Consensus         1 ~~~~~~l~V~gmtC~~C~~~i~~al~~~~gv~~v~v~~~--~~~v~~~~~~~~i~~~i~~~Gy~~~~   65 (834)
T PRK10671          1 MSQTIDLTLDGLSCGHCVKRVKESLEQRPDVEQADVSIT--EAHVTGTASAEALIETIKQAGYDASV   65 (834)
T ss_pred             CCeEEEEEECCcccHHHHHHHHHHHhcCCCcceEEEeee--EEEEEecCCHHHHHHHHHhcCCcccc
Confidence            778899999 99999999999999999999999999984  34444446788999999999998765

>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism]

Probab=98.88  E-value=2.5e-08  Score=58.32  Aligned_cols=64  Identities=33%  Similarity=0.633  Sum_probs=58.2

Q ss_pred             EEEEEeCCcChhhHHHHHHHHhCCCCeeEEEEEecCCEEEEEecCCHHHHHHHHHhcCCceEEe
Q 033693            4 TVVLKVGMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKTGKKTAFW   67 (113)
Q Consensus         4 ~~~~~ig~~c~~c~~~i~~~~~~~~gv~~~~~~~~~~~~~v~~~~~~~~i~~~i~~~g~~~~~~   67 (113)
                      +.+|.++|+|.+|++.+++.|+..+|+.++++++..+.+.++.+..++++...++.+|-++...
T Consensus         8 ~~efaV~M~cescvnavk~~L~~V~Gi~~vevdle~q~v~v~ts~p~s~i~~~le~tGr~Avl~   71 (247)
T KOG4656|consen    8 EAEFAVQMTCESCVNAVKACLKGVPGINSVEVDLEQQIVSVETSVPPSEIQNTLENTGRDAVLR   71 (247)
T ss_pred             eEEEEEechhHHHHHHHHHHhccCCCcceEEEEhhhcEEEEEccCChHHHHHHHHhhChheEEe
Confidence            4678889999999999999999999999999999999999998888999999999999876543

>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]

Probab=98.83  E-value=2.8e-08  Score=68.93  Aligned_cols=82  Identities=18%  Similarity=0.572  Sum_probs=72.1

Q ss_pred             CCcChhhHHHHHHHHhCCCCeeEEEEEecCCEEEEE--ecCCHHHHHHHHHhcCCceEEecCCCCCceeEEEEec-ccch
Q 033693           10 GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVK--GNVQPDAVLQTVSKTGKKTAFWERGKTSTSRIRFEAH-RSCS   86 (113)
Q Consensus        10 g~~c~~c~~~i~~~~~~~~gv~~~~~~~~~~~~~v~--~~~~~~~i~~~i~~~g~~~~~~~~~~~~~~~~~~~~~-~~c~   86 (113)
                      ||+|..|++.++..+.+.+|+....+++..+...+.  ...+++.+.+.+++.|+.+...........+..+.++ |+|.
T Consensus         2 gmtc~ac~~si~~~~~~~~g~~~i~vsl~~~~~~v~~~~~~~~~~i~~~ied~gf~~~~~~~~~~~~~~~~l~v~GmtC~   81 (951)
T KOG0207|consen    2 GMTCSACSNSIEKAISRKPGVQKIEVSLAQKRANVSYDNIVSPESIKETIEDMGFEASLLSDSEITASKCYLSVNGMTCA   81 (951)
T ss_pred             CccHHHHhhhHHHHHhcCCCceeEEEEeccccceEEEeeccCHHHHHHHhhcccceeeecccCccccceeEEEecCceeH
Confidence            899999999999999999999999999999998887  5678999999999999999887766665556677776 9999


Q ss_pred             hhhcc
Q 033693           87 CCLRY   91 (113)
Q Consensus        87 ~c~~~   91 (113)
                      +|.+.
T Consensus        82 scv~~   86 (951)
T KOG0207|consen   82 SCVAT   86 (951)
T ss_pred             HHHHH
Confidence            99765

>KOG1603 consensus Copper chaperone [Inorganic ion transport and metabolism]

Probab=98.73  E-value=2.6e-07  Score=46.30  Aligned_cols=58  Identities=66%  Similarity=1.007  Sum_probs=52.6

Q ss_pred             EEEEEeCCcChhhHHHHHHHHhCCCCeeEEEEEecCCEEEEEecCCHHHHHHHHHhcC
Q 033693            4 TVVLKVGMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKTG   61 (113)
Q Consensus         4 ~~~~~ig~~c~~c~~~i~~~~~~~~gv~~~~~~~~~~~~~v~~~~~~~~i~~~i~~~g   61 (113)
                      ...+++.|+|.+|..++.+.++.+.||.+..++...+.+++.+..++..+.+.+.+.+
T Consensus         6 ~~v~kv~~~C~gc~~kV~~~l~~~~GV~~v~id~~~~kvtV~g~~~p~~vl~~l~k~~   63 (73)
T KOG1603|consen    6 TVVLKVNMHCEGCARKVKRVLQKLKGVESVDIDIKKQKVTVKGNVDPVKLLKKLKKTG   63 (73)
T ss_pred             EEEEEECcccccHHHHHHHHhhccCCeEEEEecCCCCEEEEEEecCHHHHHHHHHhcC
Confidence            4556669999999999999999999999999999999999986689999999999866

>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]

Probab=98.63  E-value=2.4e-07  Score=64.01  Aligned_cols=63  Identities=30%  Similarity=0.624  Sum_probs=55.5

Q ss_pred             eEEEEEe-CCcChhhHHHHHHHHhCCCCeeEEEEEecCCEEEEE-e--cCC-HHHHHHHHHhcCCceEE
Q 033693            3 QTVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVK-G--NVQ-PDAVLQTVSKTGKKTAF   66 (113)
Q Consensus         3 ~~~~~~i-g~~c~~c~~~i~~~~~~~~gv~~~~~~~~~~~~~v~-~--~~~-~~~i~~~i~~~g~~~~~   66 (113)
                      ++..+.+ ||+|+.|++++| .+++++||....+|+.+++..+. .  ..+ .+++...+++.||....
T Consensus         2 ~~~~l~v~Gm~Ca~C~~~ie-~l~~~~gV~~~~vn~~t~~~~v~~~~~~~~~~~~~~~~v~~~gy~~~~   69 (713)
T COG2217           2 RETSLSVEGMTCAACASRIE-ALNKLPGVEEARVNLATERATVVYDPEEVDLPADIVAAVEKAGYSARL   69 (713)
T ss_pred             ceeEEeecCcCcHHHHHHHH-HHhcCCCeeEEEeecccceEEEEecccccccHHHHHHHHHhcCccccc
Confidence            4578999 999999999999 99999999999999999999887 2  234 78899999999998754

>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]

Probab=98.54  E-value=9.9e-07  Score=61.62  Aligned_cols=87  Identities=26%  Similarity=0.548  Sum_probs=71.9

Q ss_pred             EEEEe-CCcChhhHHHHHHHHhCCCCeeEEEEEecCCEEEEE---ecCCHHHHHHHHHhcCCceEEecCCCCC-ceeEEE
Q 033693            5 VVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVK---GNVQPDAVLQTVSKTGKKTAFWERGKTS-TSRIRF   79 (113)
Q Consensus         5 ~~~~i-g~~c~~c~~~i~~~~~~~~gv~~~~~~~~~~~~~v~---~~~~~~~i~~~i~~~g~~~~~~~~~~~~-~~~~~~   79 (113)
                      -.+.+ ||+|.+|++.+++.+++.+|+.+..+.+......+.   ....++.+.+.+++.|+.....+..... .+...+
T Consensus        71 ~~l~v~GmtC~scv~~i~~~l~~~~gv~~~~val~~~~~~v~~dp~v~s~~~~~e~ie~~gf~a~~i~~~~~~~~~~i~L  150 (951)
T KOG0207|consen   71 CYLSVNGMTCASCVATIERNLRKIEGVESAVVALSASKAEVIYDPAVTSPDSIAESIEDLGFSAELIESVNGNSNQKIYL  150 (951)
T ss_pred             eEEEecCceeHHHHHHHHHHhhccCCcceEEEEeeccceeEEECCcccCchhHHHHHHhcCccceehhcccCCCCCcEEE
Confidence            45789 999999999999999999999999999988888776   3478889999999999998876544322 256677


Q ss_pred             Eec-ccchhhhcc
Q 033693           80 EAH-RSCSCCLRY   91 (113)
Q Consensus        80 ~~~-~~c~~c~~~   91 (113)
                      .+. |+|.+|...
T Consensus       151 ~v~g~~c~s~~~~  163 (951)
T KOG0207|consen  151 DVLGMTCASCVSK  163 (951)
T ss_pred             Eeecccccchhhh
Confidence            776 999999755

>PLN02957 copper, zinc superoxide dismutase

Probab=98.46  E-value=8.4e-06  Score=49.81  Aligned_cols=66  Identities=35%  Similarity=0.603  Sum_probs=56.3

Q ss_pred             EEEEEeCCcChhhHHHHHHHHhCCCCeeEEEEEecCCEEEEEecCCHHHHHHHHHhcCCceEEecC
Q 033693            4 TVVLKVGMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKTGKKTAFWER   69 (113)
Q Consensus         4 ~~~~~ig~~c~~c~~~i~~~~~~~~gv~~~~~~~~~~~~~v~~~~~~~~i~~~i~~~g~~~~~~~~   69 (113)
                      +..+.++|.|.+|+..+++.+++.+|+....+++..+++.+.......++.+.+.+.||...+...
T Consensus         7 ~~~~~VgMsC~~Ca~~Iek~L~~~~GV~~v~vn~~~~~v~V~~~~~~~~I~~aIe~~Gy~a~~~~~   72 (238)
T PLN02957          7 LTEFMVDMKCEGCVAAVKNKLETLEGVKAVEVDLSNQVVRVLGSSPVKAMTAALEQTGRKARLIGQ   72 (238)
T ss_pred             EEEEEECccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEecCCHHHHHHHHHHcCCcEEEecC
Confidence            355666999999999999999999999999999999988887545788888999999998766543

>TIGR00003 copper ion binding protein

Probab=98.24  E-value=5.3e-05  Score=35.74  Aligned_cols=60  Identities=20%  Similarity=0.527  Sum_probs=47.6

Q ss_pred             EEEEEe-CCcChhhHHHHHHHHhCCCCeeEEEEEecCCEEEEEe---cCCHHHHHHHHHhcCCc
Q 033693            4 TVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKG---NVQPDAVLQTVSKTGKK   63 (113)
Q Consensus         4 ~~~~~i-g~~c~~c~~~i~~~~~~~~gv~~~~~~~~~~~~~v~~---~~~~~~i~~~i~~~g~~   63 (113)
                      +..+.+ |+.|..|...+++.++..+++....+++......+..   ......+...+...|+.
T Consensus         3 ~~~~~v~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   66 (68)
T TIGR00003         3 KFTVQVMSMTCQHCVDKIEKFVGELEGVSKVQVKLEKASVKVEFDAPQATEICIAEAILDAGYE   66 (68)
T ss_pred             EEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEcCCCEEEEEeCCCCCCHHHHHHHHHHcCCC
Confidence            457899 9999999999999999999999999999888877652   23556665666666664

This model describes an apparently copper-specific subfamily of the metal-binding domain HMA (Pfam family pfam00403). Closely related sequences outside this model include mercury resistance proteins and repeated domains of eukaryotic eukaryotic copper transport proteins. Members of this family are strictly prokaryotic. The model identifies both small proteins consisting of just this domain and N-terminal regions of cation (probably copper) transporting ATPases.

>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional

Probab=97.64  E-value=0.00055  Score=48.38  Aligned_cols=63  Identities=25%  Similarity=0.387  Sum_probs=50.7

Q ss_pred             EEEEEe-CCcChhhHHHHHHHHhCCCCeeEEEEEecCCEEEEE-ecCCHHHHHHHHHhcCCceEE
Q 033693            4 TVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVK-GNVQPDAVLQTVSKTGKKTAF   66 (113)
Q Consensus         4 ~~~~~i-g~~c~~c~~~i~~~~~~~~gv~~~~~~~~~~~~~v~-~~~~~~~i~~~i~~~g~~~~~   66 (113)
                      +..+.+ ||+|++|++.+++.+.+.+|+..+.+++.+.+..+. .....+++.+.+.+.||....
T Consensus        54 r~~l~V~Gm~C~sCa~~Ie~aL~~~~GV~~v~Vn~at~k~~V~~d~~~~~~I~~aI~~~Gy~a~~  118 (741)
T PRK11033         54 RYSWKVSGMDCPSCARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESAVQKAGFSLRD  118 (741)
T ss_pred             eEEEEECCCCcHHHHHHHHHHHhcCCCeeeEEEEcCCCeEEEEecccchHHHHHHHHhccccccc
Confidence            567889 999999999999999999999999999998887765 222235666777888887543

>PRK10671 copA copper exporting ATPase; Provisional

Probab=97.63  E-value=0.00053  Score=49.06  Aligned_cols=62  Identities=32%  Similarity=0.580  Sum_probs=52.6

Q ss_pred             EEEEEe-CCcChhhHHHHHHHHhCCCCeeEEEEEecCCEEEEEecCCHHHHHHHHHhcCCceE
Q 033693            4 TVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKTGKKTA   65 (113)
Q Consensus         4 ~~~~~i-g~~c~~c~~~i~~~~~~~~gv~~~~~~~~~~~~~v~~~~~~~~i~~~i~~~g~~~~   65 (113)
                      +..+.+ ||+|.+|++.+++.+.+.+|+....+++.+.+..+....+++++.+.+.+.||...
T Consensus       100 ~~~l~V~Gm~Ca~Ca~~Ie~~L~~~~GV~~a~vnl~t~~~~V~~~~s~~~I~~~I~~~Gy~a~  162 (834)
T PRK10671        100 SQQLLLSGMSCASCVSRVQNALQSVPGVTQARVNLAERTALVMGSASPQDLVQAVEKAGYGAE  162 (834)
T ss_pred             eEEEEeCCcCcHHHHHHHHHHHhcCCCceeeeeecCCCeEEEEccCCHHHHHHHHHhcCCCcc
Confidence            356889 99999999999999999999999999999888776644567777788888898754

>PRK13748 putative mercuric reductase; Provisional

Probab=93.71  E-value=1.5  Score=30.42  Aligned_cols=64  Identities=28%  Similarity=0.556  Sum_probs=46.9

Q ss_pred             EEEe-CCcChhhHHHHHHHHhCCCCeeEEEEEecCCEEEEE--ecCCHHHHHHHHHhcCCceEEecC
Q 033693            6 VLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVK--GNVQPDAVLQTVSKTGKKTAFWER   69 (113)
Q Consensus         6 ~~~i-g~~c~~c~~~i~~~~~~~~gv~~~~~~~~~~~~~v~--~~~~~~~i~~~i~~~g~~~~~~~~   69 (113)
                      .+.+ ++.|.+|...++..+...+++.....++......+.  .......+...+...++...+...
T Consensus         3 ~i~i~g~~C~~c~~~ie~~l~~~~gv~~a~~~~~~~~~~v~~~~~~~~~~i~~~i~~~g~~~~~~~~   69 (561)
T PRK13748          3 TLKITGMTCDSCAAHVKDALEKVPGVQSADVSYPKGSAQLAIEVGTSPDALTAAVAGLGYRATLADA   69 (561)
T ss_pred             EEEECCeecHHHHHHHHHHHhcCCCeeEEEEEcCCCEEEEEECCCCCHHHHHHHHHHcCCeeeccCc
Confidence            4668 999999999999999999998888888877775554  223455555666777776554433

>TIGR02052 MerP mercuric transport protein periplasmic component

Probab=90.62  E-value=1.3  Score=22.13  Aligned_cols=61  Identities=30%  Similarity=0.521  Sum_probs=42.5

Q ss_pred             EEEEEe-CCcChhhHHHHHHHHhCCCCeeEEEEEecCCEEEEE-e--cCCHHHHHHHHHhcCCce
Q 033693            4 TVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVK-G--NVQPDAVLQTVSKTGKKT   64 (113)
Q Consensus         4 ~~~~~i-g~~c~~c~~~i~~~~~~~~gv~~~~~~~~~~~~~v~-~--~~~~~~i~~~i~~~g~~~   64 (113)
                      ...+.+ ++.|..|...++..+...+++.....+.......+. .  ......+.......|+..
T Consensus        24 ~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~   88 (92)
T TIGR02052        24 TVTLEVPGMTCVACPITVETALQKVDGVSKAEVTFKTKLAVVTFDDEKTNVKALTEATTDAGYPS   88 (92)
T ss_pred             EEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHhcCCCe
Confidence            345678 999999999999999999998878777777664443 1  234444445555566653

This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).

>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase

Probab=86.78  E-value=2.5  Score=20.57  Aligned_cols=53  Identities=15%  Similarity=0.187  Sum_probs=38.1

Q ss_pred             EEEe-CCcChhhHHHHHHHHhCCCCeeEEEEEecCCEEEEE--ecCCHHHHHHHHHhcCCceEEe
Q 033693            6 VLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVK--GNVQPDAVLQTVSKTGKKTAFW   67 (113)
Q Consensus         6 ~~~i-g~~c~~c~~~i~~~~~~~~gv~~~~~~~~~~~~~v~--~~~~~~~i~~~i~~~g~~~~~~   67 (113)
                      ++.. |..|+.+...+.+++.+++.-         +.+.+.  .+....++.......|+.....
T Consensus         2 ~lD~rg~~CP~Pll~~~~~l~~l~~G---------~~l~v~~d~~~~~~di~~~~~~~g~~~~~~   57 (70)
T PF01206_consen    2 TLDLRGLSCPMPLLKAKKALKELPPG---------EVLEVLVDDPAAVEDIPRWCEENGYEVVEV   57 (70)
T ss_dssp             EEECSS-STTHHHHHHHHHHHTSGTT----------EEEEEESSTTHHHHHHHHHHHHTEEEEEE
T ss_pred             EEeCCCCCCCHHHHHHHHHHHhcCCC---------CEEEEEECCccHHHHHHHHHHHCCCEEEEE
Confidence            5677 999999999999999987332         333333  4456788888999999975443

This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.

>PRK11018 hypothetical protein; Provisional

Probab=81.06  E-value=5.5  Score=20.07  Aligned_cols=53  Identities=13%  Similarity=0.058  Sum_probs=39.3

Q ss_pred             EEEEe-CCcChhhHHHHHHHHhCCCCeeEEEEEecCCEEEEE--ecCCHHHHHHHHHhcCCceEE
Q 033693            5 VVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVK--GNVQPDAVLQTVSKTGKKTAF   66 (113)
Q Consensus         5 ~~~~i-g~~c~~c~~~i~~~~~~~~gv~~~~~~~~~~~~~v~--~~~~~~~i~~~i~~~g~~~~~   66 (113)
                      ..+.. |..|+-..-+..+++++++..         +.+.+.  .......+.......|+....
T Consensus         9 ~~lD~rG~~CP~Pvl~~kk~l~~l~~G---------~~L~V~~d~~~a~~di~~~~~~~G~~v~~   64 (78)
T PRK11018          9 YRLDMVGEPCPYPAVATLEALPQLKKG---------EILEVVSDCPQSINNIPLDARNHGYTVLD   64 (78)
T ss_pred             eeEECCCCcCCHHHHHHHHHHHhCCCC---------CEEEEEeCCccHHHHHHHHHHHcCCEEEE
Confidence            56778 999999999999999987432         223332  345667788888999998754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	113
1fe4_A	68	Crystal Structure Of Mercury-Hah1 Length = 68		2e-07
3cjk_A	68	Crystal Structure Of The Adduct Hah1-Cd(Ii)-Mnk1 Le		2e-07
1jk9_B	249	Heterodimer Between H48f-Ysod1 And Yccs Length = 24		6e-06
2roe_A	66	Solution Structure Of Thermus Thermophilus Hb8 Ttha		2e-05
1cc7_A	73	Crystal Structure Of The Atx1 Metallochaperone Prot		3e-05
1fd8_A	73	Solution Structure Of The Cu(I) Form Of The Yeast M		3e-05
1qup_A	222	Crystal Structure Of The Copper Chaperone For Super		5e-05

>pdb|1FE4|A Chain A, Crystal Structure Of Mercury-Hah1 Length = 68

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 9  VGMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKTGKKTAFW 67
          V M+C GC  AV RVL K+ GV+ +DIDL  +KV ++     D +L T+ KTGK  ++ 
Sbjct: 8  VDMTCGGCAEAVSRVLNKLGGVK-YDIDLPNKKVCIESEHSMDTLLATLKKTGKTVSYL 65

>pdb|3CJK|A Chain A, Crystal Structure Of The Adduct Hah1-Cd(Ii)-Mnk1 Length = 68

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 9  VGMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKTGKKTAFW 67
          V M+C GC  AV RVL K+ GV+ +DIDL  +KV ++     D +L T+ KTGK  ++ 
Sbjct: 7  VDMTCGGCAEAVSRVLNKLGGVK-YDIDLPNKKVCIESEHSMDTLLATLKKTGKTVSYL 64

>pdb|1JK9|B Chain B, Heterodimer Between H48f-Ysod1 And Yccs Length = 249

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 38/69 (55%)
Query: 9  VGMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKTGKKTAFWE 68
          + M CE CV  +K  L  + G+ + + D+++Q ++V+ +V P  ++ T+   GK      
Sbjct: 13 IPMHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESSVAPSTIINTLRNCGKDAIIRG 72
Query: 69 RGKTSTSRI 77
           GK ++S +
Sbjct: 73 AGKPNSSAV 81

>pdb|2ROE|A Chain A, Solution Structure Of Thermus Thermophilus Hb8 Ttha1718 Protein In Vitro Length = 66

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 7  LKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKTGKKT 64
          LKV GM+C  CV AV + L K+ GVE  ++ L++ +  V+G   P A++Q V + G K 
Sbjct: 4  LKVEGMTCNHCVMAVTKALKKVPGVEKVEVSLEKGEALVEGTADPKALVQAVEEEGYKA 62

>pdb|1CC7|A Chain A, Crystal Structure Of The Atx1 Metallochaperone Protein Length = 73

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 7  LKVGMSCEGCVGAVKRVLGKMD-GVETFDIDLKEQKVTVKGNVQPDAVLQTVSKTGKK 63
            V M+C GC GAV +VL K++  V   DI L++Q V V   +  D +L+ + KTGK+
Sbjct: 9  FNVVMTCSGCSGAVNKVLTKLEPDVSKIDISLEKQLVDVYTTLPYDFILEKIKKTGKE 66

>pdb|1FD8|A Chain A, Solution Structure Of The Cu(I) Form Of The Yeast Metallochaperone, Atx1 Length = 73

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 7  LKVGMSCEGCVGAVKRVLGKMD-GVETFDIDLKEQKVTVKGNVQPDAVLQTVSKTGKK 63
            V M+C GC GAV +VL K++  V   DI L++Q V V   +  D +L+ + KTGK+
Sbjct: 9  FNVVMTCSGCSGAVNKVLTKLEPDVSKIDISLEKQLVDVYTTLPYDFILEKIKKTGKE 66

>pdb|1QUP|A Chain A, Crystal Structure Of The Copper Chaperone For Superoxide Dismutase Length = 222

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 18/69 (26%), Positives = 36/69 (52%)
Query: 9  VGMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKTGKKTAFWE 68
          +   CE CV  +K  L  + G+ + + D+++Q  +V+ +V P  ++ T+   GK      
Sbjct: 12 IPXHCENCVNDIKACLKNVPGINSLNFDIEQQIXSVESSVAPSTIINTLRNCGKDAIIRG 71
Query: 69 RGKTSTSRI 77
           GK ++S +
Sbjct: 72 AGKPNSSAV 80

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	113
2crl_A	98	Copper chaperone for superoxide dismutase; SOD1, f	6e-26
3iwl_A	68	Copper transport protein ATOX1; beta-alpha-beta-BE	3e-24
1qup_A	222	Superoxide dismutase 1 copper chaperone; two domai	8e-24
1cc8_A	73	Protein (metallochaperone ATX1); copper transport,	1e-22
1jk9_B	249	CCS, copper chaperone for superoxide dismutase; pr	8e-22
2k2p_A	85	Uncharacterized protein ATU1203; putative metal-bi	3e-14
2xmm_A	64	SSR2857 protein, ATX1; metal transport, copper hom	6e-14
1aw0_A	72	Menkes copper-transporting ATPase; copper-binding	5e-13
2xmw_A	71	PACS-N, cation-transporting ATPase PACS; hydrolase	5e-13
2roe_A	66	Heavy metal binding protein; NMR {Thermus thermoph	8e-13
1osd_A	72	MERP, hypothetical protein MERP; mercury resistanc	4e-12
1kvi_A	79	Copper-transporting ATPase 1; menkes, Cu-protein,	5e-12
3cjk_B	75	Copper-transporting ATPase 1; HAH1, ATP7B, menkes	6e-12
2qif_A	69	Copper chaperone COPZ; tetranuclear Cu(I) cluster;	8e-12
2l3m_A	71	Copper-ION-binding protein; structural genomics, c	8e-12
1fvq_A	72	Copper-transporting ATPase; APO-CCC2A, hydrolase;	2e-11
1yg0_A	66	COP associated protein; open-faced beta-sandwich,	2e-11
1q8l_A	84	Copper-transporting ATPase 1; metal binding protei	2e-11
2g9o_A	90	Copper-transporting ATPase 1; menkes disease, solu	2e-11
3dxs_X	74	Copper-transporting ATPase RAN1; CXXC motif, ferre	3e-11
2ew9_A	149	Copper-transporting ATPase 2; copper trafficking,	5e-11
2ew9_A	149	Copper-transporting ATPase 2; copper trafficking,	3e-09
2ldi_A	71	Zinc-transporting ATPase; metal homeostasis, metal	1e-10
1y3j_A	77	Copper-transporting ATPase 1; ferrodoxin-like fold	1e-10
2kkh_A	95	Putative heavy metal transporter; zinc transport,	2e-10
2kt2_A	69	Mercuric reductase; nmera, MERA, HMA domain, mercu	2e-10
2aj0_A	71	Probable cadmium-transporting ATPase; ferrodoxin-l	2e-10
3fry_A	73	Probable copper-exporting P-type ATPase A; transpo	2e-10
1cpz_A	68	Protein (COPZ); copper chaperone, metal transport,	3e-10
1jww_A	80	Potential copper-transporting ATPase; beta-alpha-b	3e-10
2rop_A	202	Copper-transporting ATPase 2; wilson protein, mobi	6e-10
2rop_A	202	Copper-transporting ATPase 2; wilson protein, mobi	7e-09
1p6t_A	151	Potential copper-transporting ATPase; COPA, P-type	8e-10
1p6t_A	151	Potential copper-transporting ATPase; COPA, P-type	6e-09
1opz_A	76	Potential copper-transporting ATPase; mutation, fo	2e-09
2ofg_X	111	Zinc-transporting ATPase; ferredoxin-like fold, be	3e-09
2kyz_A	67	Heavy metal binding protein; structural genomics,	7e-09
3j09_A	723	COPA, copper-exporting P-type ATPase A; copper tra	1e-08
1yjr_A	75	Copper-transporting ATPase 1; metallochaperone, pr	1e-08
1mwy_A	73	ZNTA; open-faced beta-sandwich fold, beta-alpha-be	8e-08

>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 98

 Score = 91.8 bits (228), Expect = 6e-26
 Identities = 19/73 (26%), Positives = 34/73 (46%)

Query: 3  QTVVLKVGMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKTGK 62
           T+   V M+C+ CV AV++ L  + GV+  ++ L++Q V V   +    V   +  TG+
Sbjct: 19 CTLEFAVQMTCQSCVDAVRKSLQGVAGVQDVEVHLEDQMVLVHTTLPSQEVQALLEGTGR 78

Query: 63 KTAFWERGKTSTS 75
          +      G     
Sbjct: 79 QAVLKGMGSGQLQ 91

>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta, cisplatin, platinum, chaperone, ION transport, metal-binding, metal transport; HET: TCE; 1.60A {Homo sapiens} PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B 1fe0_A* 3iwx_A 3cjk_A Length = 68

 Score = 87.0 bits (216), Expect = 3e-24
 Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 1/65 (1%)

Query: 3  QTVVLKVGMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKTGK 62
                V M+C GC  AV RVL K+ GV+ +DIDL  +KV ++     D +L T+ KTGK
Sbjct: 2  PKHEFSVDMTCGGCAEAVSRVLNKLGGVK-YDIDLPNKKVCIESEHSMDTLLATLKKTGK 60

Query: 63 KTAFW 67
            ++ 
Sbjct: 61 TVSYL 65

>1qup_A Superoxide dismutase 1 copper chaperone; two domains, beta-alpha-beta-BETA-alpha-beta and beta barrel; 1.80A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1 Length = 222

 Score = 90.1 bits (223), Expect = 8e-24
 Identities = 19/76 (25%), Positives = 39/76 (51%)

Query: 2  SQTVVLKVGMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKTG 61
          +      + M CE CV  +K  L  + G+ + + D+++Q ++V+ +V P  ++ T+   G
Sbjct: 5  TYEATYAIPMHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESSVAPSTIINTLRNCG 64

Query: 62 KKTAFWERGKTSTSRI 77
          K       GK ++S +
Sbjct: 65 KDAIIRGAGKPNSSAV 80

>1cc8_A Protein (metallochaperone ATX1); copper transport, mercury coordination, metal transport; 1.02A {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1cc7_A 1fd8_A 1fes_A 2ggp_A 3k7r_A Length = 73

 Score = 82.9 bits (205), Expect = 1e-22
 Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 1/67 (1%)

Query: 3  QTVVLKVGMSCEGCVGAVKRVLGKMD-GVETFDIDLKEQKVTVKGNVQPDAVLQTVSKTG 61
          +     V M+C GC GAV +VL K++  V   DI L++Q V V   +  D +L+ + KTG
Sbjct: 5  KHYQFNVVMTCSGCSGAVNKVLTKLEPDVSKIDISLEKQLVDVYTTLPYDFILEKIKKTG 64

Query: 62 KKTAFWE 68
          K+    +
Sbjct: 65 KEVRSGK 71

>1jk9_B CCS, copper chaperone for superoxide dismutase; protein-protein complex, heterodimer, metallochaperone, amyotrophic lateral sclerosis; 2.90A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1 Length = 249

 Score = 85.2 bits (210), Expect = 8e-22
 Identities = 21/98 (21%), Positives = 44/98 (44%), Gaps = 1/98 (1%)

Query: 2   SQTVVLKVGMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKTG 61
           +      + M CE CV  +K  L  + G+ + + D+++Q ++V+ +V P  ++ T+   G
Sbjct: 6   TYEATYAIPMHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESSVAPSTIINTLRNCG 65

Query: 62  KKTAFWERGKTSTSR-IRFEAHRSCSCCLRYQWPVHFV 98
           K       GK ++S     E  +  +   +    V  +
Sbjct: 66  KDAIIRGAGKPNSSAVAILETFQKYTIDQKKDTAVRGL 103

>2k2p_A Uncharacterized protein ATU1203; putative metal-binding domain ATU1203, ontario centre for ST proteomics, structural genomics; NMR {Agrobacterium tumefaciens str} Length = 85

 Score = 61.8 bits (150), Expect = 3e-14
 Identities = 12/62 (19%), Positives = 21/62 (33%), Gaps = 1/62 (1%)

Query: 1  MSQTVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSK 59
              +   V  M+C  C G +K  + K         D   + V V G      + + ++ 
Sbjct: 20 QGAGLSFHVEDMTCGHCAGVIKGAIEKTVPGAAVHADPASRTVVVGGVSDAAHIAEIITA 79

Query: 60 TG 61
           G
Sbjct: 80 AG 81

>2xmm_A SSR2857 protein, ATX1; metal transport, copper homeostasis, chaperone, P-type atpas; 1.65A {Synechocystis SP} PDB: 2xmv_A 1sb6_A 2xmj_A 2xmk_A 2xmt_A 2xmu_A Length = 64

 Score = 60.4 bits (147), Expect = 6e-14
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 4  TVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKTG 61
          T+ L V  ++CE C  AV + +   D   T  +DL  +KVT+   +  + +   ++  G
Sbjct: 2  TIQLTVPTIACEACAEAVTKAVQNEDAQATVQVDLTSKKVTITSALGEEQLRTAIASAG 60

>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A Length = 72

 Score = 58.1 bits (141), Expect = 5e-13
 Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 4/65 (6%)

Query: 1  MSQTVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVK---GNVQPDAVLQT 56
          ++Q  V+ + GM+C  CV +++ V+ K  GV++  + L     TV+       P+ +   
Sbjct: 1  LTQETVINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLANSNGTVEYDPLLTSPETLRGA 60

Query: 57 VSKTG 61
          +   G
Sbjct: 61 IEDMG 65

>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A Length = 71

 Score = 58.1 bits (141), Expect = 5e-13
 Identities = 17/64 (26%), Positives = 35/64 (54%), Gaps = 3/64 (4%)

Query: 1  MSQTVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQK--VTVKGNVQPDAVLQTV 57
          M+QT+ L++ GM C  C  +++R + K+ GV++  ++   ++  V+  G   P  +   V
Sbjct: 1  MAQTINLQLEGMRCAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAV 60

Query: 58 SKTG 61
           + G
Sbjct: 61 ERAG 64

>2roe_A Heavy metal binding protein; NMR {Thermus thermophilus} PDB: 2rog_A Length = 66

 Score = 57.7 bits (140), Expect = 8e-13
 Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 1/58 (1%)

Query: 5  VVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKTG 61
          + LKV GM+C  CV AV + L K+ GVE  ++ L++ +  V+G   P A++Q V + G
Sbjct: 2  LKLKVEGMTCNHCVMAVTKALKKVPGVEKVEVSLEKGEALVEGTADPKALVQAVEEEG 59

>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A Length = 72

 Score = 55.8 bits (135), Expect = 4e-12
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 4/64 (6%)

Query: 2  SQTVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVK---GNVQPDAVLQTV 57
          +QTV L V GM+C  C   VK+ + K++GV   D+  + ++  V           + +  
Sbjct: 2  TQTVTLSVPGMTCSACPITVKKAISKVEGVSKVDVTFETRQAVVTFDDAKTSVQKLTKAT 61

Query: 58 SKTG 61
          +  G
Sbjct: 62 ADAG 65

>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A Length = 79

 Score = 55.8 bits (135), Expect = 5e-12
 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 3  QTVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVK---GNVQPDAVLQTVS 58
           +V + V GM+C  CV  +++ +GK++GV    + L+E+  T+        P  + + + 
Sbjct: 8  NSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAID 67

Query: 59 KTG 61
            G
Sbjct: 68 DMG 70

>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal homeostasis, chaperone, ION transport, metal- binding, alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A Length = 75

 Score = 55.4 bits (134), Expect = 6e-12
 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 3  QTVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVK---GNVQPDAVLQTVS 58
           +V + V GM+C  CV  +++ +GK++GV    + L+E+  T+        P  + + + 
Sbjct: 2  NSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAID 61

Query: 59 KTG 61
            G
Sbjct: 62 DMG 64

>2qif_A Copper chaperone COPZ; tetranuclear Cu(I) cluster; 1.50A {Bacillus subtilis} SCOP: d.58.17.1 PDB: 3i9z_A 1k0v_A 1p8g_A Length = 69

 Score = 55.0 bits (133), Expect = 8e-12
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 3  QTVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVK---GNVQPDAVLQTVS 58
          +   L+V GMSC+ CV AV+  +G++DGV    ++L+  KV V      V    +   + 
Sbjct: 2  EQKTLQVEGMSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDVSFDADKVSVKDIADAIE 61

Query: 59 KTG 61
            G
Sbjct: 62 DQG 64

>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis} Length = 71

 Score = 55.0 bits (133), Expect = 8e-12
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 4/63 (6%)

Query: 3  QTVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVK---GNVQPDAVLQTVS 58
          + + L+V GMSC  CV A++  + +++GVE   + L E  V V      V    ++  + 
Sbjct: 5  EQLTLQVEGMSCGHCVNAIESSVKELNGVEQVKVQLAEGTVEVTIDSSVVTLKDIVAVIE 64

Query: 59 KTG 61
            G
Sbjct: 65 DQG 67

>1fvq_A Copper-transporting ATPase; APO-CCC2A, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1fvs_A 2ggp_B Length = 72

 Score = 54.2 bits (131), Expect = 2e-11
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 3/63 (4%)

Query: 2  SQTVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVK--GNVQPDAVLQTVS 58
          ++ V+L V GM+C  C   +   L  + GV   DI L   +  V     V  D++ + + 
Sbjct: 1  AREVILAVHGMTCSACTNTINTQLRALKGVTKCDISLVTNECQVTYDNEVTADSIKEIIE 60

Query: 59 KTG 61
            G
Sbjct: 61 DCG 63

>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori} Length = 66

 Score = 53.8 bits (130), Expect = 2e-11
 Identities = 12/61 (19%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 4  TVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVK--GNVQPDAVLQTVSKT 60
              +V  ++C  CV  +++ +G+++GV   D+ ++++ V V+       D + + +   
Sbjct: 2  KATFQVPSITCNHCVDKIEKFVGEIEGVSFIDVSVEKKSVVVEFDAPATQDLIKEALLDA 61

Query: 61 G 61
          G
Sbjct: 62 G 62

>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A Length = 84

 Score = 54.3 bits (131), Expect = 2e-11
 Identities = 14/63 (22%), Positives = 30/63 (47%), Gaps = 4/63 (6%)

Query: 3  QTVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVK---GNVQPDAVLQTVS 58
            + +KV GM+C  C   ++  +GK+ GV+   + L  Q+ T+      +  + + + + 
Sbjct: 9  VVLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIVYQPHLISVEEMKKQIE 68

Query: 59 KTG 61
            G
Sbjct: 69 AMG 71

>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A Length = 90

 Score = 54.4 bits (131), Expect = 2e-11
 Identities = 13/62 (20%), Positives = 27/62 (43%), Gaps = 4/62 (6%)

Query: 4  TVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGN---VQPDAVLQTVSK 59
          T    + GM C+ CV  ++  L  +  V +  + L+ +   V  N   V P+++ + +  
Sbjct: 4  TATFIIDGMHCKSCVSNIESTLSALQYVSSIVVSLENRSAIVVYNASSVTPESLRKAIEA 63

Query: 60 TG 61
            
Sbjct: 64 VS 65

>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} Length = 74

 Score = 53.5 bits (129), Expect = 3e-11
 Identities = 13/63 (20%), Positives = 29/63 (46%), Gaps = 4/63 (6%)

Query: 3  QTVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVK---GNVQPDAVLQTVS 58
          + + + V GM+C  C  +V+  L  ++GV    + L + +  V      V+ + + + + 
Sbjct: 2  RKIQVGVTGMTCAACSNSVEAALMNVNGVFKASVALLQNRADVVFDPNLVKEEDIKEEIE 61

Query: 59 KTG 61
            G
Sbjct: 62 DAG 64

>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} Length = 149

 Score = 55.1 bits (133), Expect = 5e-11
 Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 4/83 (4%)

Query: 2  SQTVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGN---VQPDAVLQTV 57
           Q   L++ GM+C  CV  ++R L K  GV +  + L   K  +K +   +QP  + Q +
Sbjct: 3  PQKCFLQIKGMTCASCVSNIERNLQKEAGVLSVLVALMAGKAEIKYDPEVIQPLEIAQFI 62

Query: 58 SKTGKKTAFWERGKTSTSRIRFE 80
             G + A  E    S   I   
Sbjct: 63 QDLGFEAAVMEDYAGSDGNIELT 85

>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} Length = 149

 Score = 50.4 bits (121), Expect = 3e-09
 Identities = 14/64 (21%), Positives = 29/64 (45%), Gaps = 4/64 (6%)

Query: 2   SQTVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVK---GNVQPDAVLQTV 57
              + L + GM+C  CV  ++  L + +G+    + L   K  VK     + P  +++ +
Sbjct: 79  DGNIELTITGMTCASCVHNIESKLTRTNGITYASVALATSKALVKFDPEIIGPRDIIKII 138

Query: 58  SKTG 61
            + G
Sbjct: 139 EEIG 142

>2ldi_A Zinc-transporting ATPase; metal homeostasis, metallochaperones, hydrolase; NMR {Synechocystis SP} Length = 71

 Score = 52.3 bits (126), Expect = 1e-10
 Identities = 14/63 (22%), Positives = 30/63 (47%), Gaps = 4/63 (6%)

Query: 3  QTVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVK---GNVQPDAVLQTVS 58
          +T  ++V GM C  C  +++R L ++ GV    + +   ++TV      V    + + ++
Sbjct: 3  KTQQMQVGGMRCAACASSIERALERLKGVAEASVTVATGRLTVTYDPKQVSEITIQERIA 62

Query: 59 KTG 61
            G
Sbjct: 63 ALG 65

>1y3j_A Copper-transporting ATPase 1; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta structure, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1y3k_A Length = 77

 Score = 52.3 bits (126), Expect = 1e-10
 Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 4/64 (6%)

Query: 2  SQTVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVK---GNVQPDAVLQTV 57
          S    ++V GM+C  CV  ++R L + +G+ +  + L   K  V+     +QP  + + +
Sbjct: 2  SSKCYIQVTGMTCASCVANIERNLRREEGIYSILVALMAGKAEVRYNPAVIQPPMIAEFI 61

Query: 58 SKTG 61
           + G
Sbjct: 62 RELG 65

>2kkh_A Putative heavy metal transporter; zinc transport, metal binding, metal selectivity, ferredoxin fold, ATP-binding, hydrolase; NMR {Arabidopsis thaliana} Length = 95

 Score = 52.5 bits (126), Expect = 2e-10
 Identities = 12/63 (19%), Positives = 28/63 (44%), Gaps = 4/63 (6%)

Query: 3  QTVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVK---GNVQPDAVLQTVS 58
          Q     V G+ C   V  ++ +L  +DGV+ + + +  + V V      + P  + + ++
Sbjct: 16 QKSYFDVLGICCTSEVPIIENILKSLDGVKEYSVIVPSRTVIVVHDSLLISPFQIAKALN 75

Query: 59 KTG 61
          +  
Sbjct: 76 EAR 78

>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A Length = 69

 Score = 51.6 bits (124), Expect = 2e-10
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 3/60 (5%)

Query: 5  VVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQK--VTVKGNVQPDAVLQTVSKTG 61
            LK+ GM+C+ C   VK  L K+ GV++  +   +    + +     PDA+   V+  G
Sbjct: 2  THLKITGMTCDSCAAHVKEALEKVPGVQSALVSYPKGTAQLAIVPGTSPDALTAAVAGLG 61

>2aj0_A Probable cadmium-transporting ATPase; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta, metal binding protein, hydrolase; NMR {Listeria monocytogenes} PDB: 2aj1_A Length = 71

 Score = 51.7 bits (124), Expect = 2e-10
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 1/64 (1%)

Query: 1  MSQTVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSK 59
          M++  V +V G+SC  C    +R + +++GV    ++    K+TV G      V Q  + 
Sbjct: 1  MAEKTVYRVDGLSCTNCAAKFERNVKEIEGVTEAIVNFGASKITVTGEASIQQVEQAGAF 60

Query: 60 TGKK 63
             K
Sbjct: 61 EHLK 64

>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus} Length = 73

 Score = 51.6 bits (124), Expect = 2e-10
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 2  SQTVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKT 60
           + +VL++ G+SC  CV  VK+ L +  G +   +DL E  V        D  ++ V   
Sbjct: 4  VEKIVLELSGLSCHHCVARVKKALEEA-GAKVEKVDLNEAVVAGNK-EDVDKYIKAVEAA 61

Query: 61 G 61
          G
Sbjct: 62 G 62

>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1 Length = 68

 Score = 51.1 bits (123), Expect = 3e-10
 Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 3/55 (5%)

Query: 10 GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVK---GNVQPDAVLQTVSKTG 61
          GMSC  CV  ++  +G++ GV+   + LK++K  VK    NVQ   + Q +++ G
Sbjct: 8  GMSCNHCVARIEEAVGRISGVKKVKVQLKKEKAVVKFDEANVQATEICQAINELG 62

>1jww_A Potential copper-transporting ATPase; beta-alpha-beta-BETA-alpha-beta, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 2voy_A 1kqk_A Length = 80

 Score = 51.2 bits (123), Expect = 3e-10
 Identities = 14/65 (21%), Positives = 30/65 (46%), Gaps = 4/65 (6%)

Query: 1  MSQTVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVK---GNVQPDAVLQT 56
          +++     + GM+C  C   +++ L K++GV    ++   + VTV+          + + 
Sbjct: 1  VTEKAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEA 60

Query: 57 VSKTG 61
          V K G
Sbjct: 61 VDKLG 65

>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens} Length = 202

 Score = 53.1 bits (127), Expect = 6e-10
 Identities = 14/63 (22%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 3   QTVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVK---GNVQPDAVLQTVS 58
            T ++ + GM+C  CV +++ ++ +++GV+   + L E   TV      + P+ +   + 
Sbjct: 122 STTLIAIAGMTCASCVHSIEGMISQLEGVQQISVSLAEGTATVLYNPAVISPEELRAAIE 181

Query: 59  KTG 61
             G
Sbjct: 182 DMG 184

>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens} Length = 202

 Score = 50.0 bits (119), Expect = 7e-09
 Identities = 15/64 (23%), Positives = 33/64 (51%), Gaps = 4/64 (6%)

Query: 3  QTVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGN---VQPDAVLQTVS 58
           T+ L++ GM C+ CV  ++  +G++ GV++  + L+ +   VK +     P A+ + + 
Sbjct: 20 VTLQLRIDGMHCKSCVLNIEENIGQLLGVQSIQVSLENKTAQVKYDPSCTSPVALQRAIE 79

Query: 59 KTGK 62
              
Sbjct: 80 ALPP 83

>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A Length = 151

 Score = 52.0 bits (125), Expect = 8e-10
 Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 4/64 (6%)

Query: 2  SQTVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVK---GNVQPDAVLQTV 57
           + + ++V GM+C  C   +++ L +M GV   +++L  + V V          A+ + +
Sbjct: 5  QKEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKI 64

Query: 58 SKTG 61
           K G
Sbjct: 65 EKLG 68

>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A Length = 151

 Score = 49.3 bits (118), Expect = 6e-09
 Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 4/63 (6%)

Query: 3   QTVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVK---GNVQPDAVLQTVS 58
           +     + GM+C  C   +++ L K++GV    ++   + VTV+          + + V 
Sbjct: 74  EKAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVD 133

Query: 59  KTG 61
           K G
Sbjct: 134 KLG 136

>1opz_A Potential copper-transporting ATPase; mutation, folding, abbab fold, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 1oq3_A 1oq6_A Length = 76

 Score = 48.9 bits (117), Expect = 2e-09
 Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 4/64 (6%)

Query: 2  SQTVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVK---GNVQPDAVLQTV 57
           + + ++V GM+C  C   +++ L +M GV   +++L  + V V          A+ + +
Sbjct: 5  QKEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKI 64

Query: 58 SKTG 61
           K G
Sbjct: 65 EKLG 68

>2kyz_A Heavy metal binding protein; structural genomics, PSI-biology, protein structure initiative, joint for structural genomics, JCSG; NMR {Thermotoga maritima} Length = 67

 Score = 47.5 bits (113), Expect = 7e-09
 Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 3/59 (5%)

Query: 4  TVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKTG 61
            VL V  +SC  C   + + L ++ GV+ +++ ++E+KV V+     D+VL+ + +  
Sbjct: 2  RYVLYVPDISCNHCKMRISKALEEL-GVKNYEVSVEEKKVVVETE-NLDSVLKKLEEID 58

>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus} Length = 723

 Score = 50.2 bits (121), Expect = 1e-08
 Identities = 12/63 (19%), Positives = 31/63 (49%), Gaps = 4/63 (6%)

Query: 3  QTVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVK---GNVQPDAVLQTVS 58
              ++V GM+C  CV +++  +G ++GVE   ++L  +   ++     +  + + + + 
Sbjct: 2  MERTVRVTGMTCAMCVKSIETAVGSLEGVEEVRVNLATETAFIRFDEKRIDFETIKRVIE 61

Query: 59 KTG 61
            G
Sbjct: 62 DLG 64

>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein interaction, copper(I), metal homeostasis, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A Length = 75

 Score = 47.3 bits (113), Expect = 1e-08
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 4/64 (6%)

Query: 2  SQTVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVK---GNVQPDAVLQTV 57
             + L V GM+C  CV  ++  L K  G+    + L   K  +K     + P  ++ T+
Sbjct: 3  DGVLELVVRGMTCASCVHKIESSLTKHRGILYCSVALATNKAHIKYDPEIIGPRDIIHTI 62

Query: 58 SKTG 61
             G
Sbjct: 63 ESLG 66

>1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha- beta, hydrolase; NMR {Escherichia coli} SCOP: d.58.17.1 PDB: 1mwz_A Length = 73

 Score = 45.1 bits (107), Expect = 8e-08
 Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 2/62 (3%)

Query: 2  SQTVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGN-VQPDAVLQTVSK 59
                KV GM C  C   V+  + ++ GV    +    +K+ V  +      V   + K
Sbjct: 2  GTRYSWKVSGMDCAACARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESALQK 61

Query: 60 TG 61
           G
Sbjct: 62 AG 63

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	113
3dxs_X	74	Copper-transporting ATPase RAN1; CXXC motif, ferre	99.58
3iwl_A	68	Copper transport protein ATOX1; beta-alpha-beta-BE	99.58
2ew9_A	149	Copper-transporting ATPase 2; copper trafficking,	99.57
4a4j_A	69	Pacszia, cation-transporting ATPase PACS; hydrolas	99.55
3fry_A	73	Probable copper-exporting P-type ATPase A; transpo	99.54
2xmw_A	71	PACS-N, cation-transporting ATPase PACS; hydrolase	99.52
1cc8_A	73	Protein (metallochaperone ATX1); copper transport,	99.49
1mwy_A	73	ZNTA; open-faced beta-sandwich fold, beta-alpha-be	99.42
2l3m_A	71	Copper-ION-binding protein; structural genomics, c	99.37
3cjk_B	75	Copper-transporting ATPase 1; HAH1, ATP7B, menkes	99.37
1p6t_A	151	Potential copper-transporting ATPase; COPA, P-type	99.36
1osd_A	72	MERP, hypothetical protein MERP; mercury resistanc	99.36
1aw0_A	72	Menkes copper-transporting ATPase; copper-binding	99.35
1y3j_A	77	Copper-transporting ATPase 1; ferrodoxin-like fold	99.34
2crl_A	98	Copper chaperone for superoxide dismutase; SOD1, f	99.34
2qif_A	69	Copper chaperone COPZ; tetranuclear Cu(I) cluster;	99.33
2g9o_A	90	Copper-transporting ATPase 1; menkes disease, solu	99.33
2k2p_A	85	Uncharacterized protein ATU1203; putative metal-bi	99.33
1kvi_A	79	Copper-transporting ATPase 1; menkes, Cu-protein,	99.33
2xmm_A	64	SSR2857 protein, ATX1; metal transport, copper hom	99.33
2roe_A	66	Heavy metal binding protein; NMR {Thermus thermoph	99.32
1q8l_A	84	Copper-transporting ATPase 1; metal binding protei	99.31
2kt2_A	69	Mercuric reductase; nmera, MERA, HMA domain, mercu	99.3
1yg0_A	66	COP associated protein; open-faced beta-sandwich,	99.3
1yjr_A	75	Copper-transporting ATPase 1; metallochaperone, pr	99.3
1opz_A	76	Potential copper-transporting ATPase; mutation, fo	99.29
2rop_A	202	Copper-transporting ATPase 2; wilson protein, mobi	99.28
2ofg_X	111	Zinc-transporting ATPase; ferredoxin-like fold, be	99.28
1cpz_A	68	Protein (COPZ); copper chaperone, metal transport,	99.28
1jww_A	80	Potential copper-transporting ATPase; beta-alpha-b	99.28
2ldi_A	71	Zinc-transporting ATPase; metal homeostasis, metal	99.27
1fvq_A	72	Copper-transporting ATPase; APO-CCC2A, hydrolase;	99.27
2kkh_A	95	Putative heavy metal transporter; zinc transport,	99.25
1p6t_A	151	Potential copper-transporting ATPase; COPA, P-type	99.22
2kyz_A	67	Heavy metal binding protein; structural genomics,	99.22
2aj0_A	71	Probable cadmium-transporting ATPase; ferrodoxin-l	99.21
3j09_A	723	COPA, copper-exporting P-type ATPase A; copper tra	99.19
2ew9_A	149	Copper-transporting ATPase 2; copper trafficking,	99.19
2rop_A	202	Copper-transporting ATPase 2; wilson protein, mobi	99.15
1qup_A	222	Superoxide dismutase 1 copper chaperone; two domai	99.07
1jk9_B	249	CCS, copper chaperone for superoxide dismutase; pr	98.99
4gwb_A	168	Peptide methionine sulfoxide reductase MSRA 3; str	90.45
1je3_A	97	EC005, hypothetical 8.6 kDa protein in AMYA-FLIE i	88.28
1jdq_A	98	TM006 protein, hypothetical protein TM0983; struct	86.86
3lvj_C	82	Sulfurtransferase TUSA; protein-protein complex, s	86.02

>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0

Probab=99.58  E-value=4.4e-14  Score=70.33  Aligned_cols=65  Identities=20%  Similarity=0.440  Sum_probs=59.1

Q ss_pred             eEEEEEe-CCcChhhHHHHHHHHhCCCCeeEEEEEecCCEEEEE---ecCCHHHHHHHHHhcCCceEEe
Q 033693            3 QTVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVK---GNVQPDAVLQTVSKTGKKTAFW   67 (113)
Q Consensus         3 ~~~~~~i-g~~c~~c~~~i~~~~~~~~gv~~~~~~~~~~~~~v~---~~~~~~~i~~~i~~~g~~~~~~   67 (113)
                      ++..+.+ ||+|++|++.+++.+++++|+..+.+|+.++++.+.   ...+.+++.+.+.+.||.+.+.
T Consensus         2 ~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~   70 (74)
T 3dxs_X            2 RKIQVGVTGMTCAACSNSVEAALMNVNGVFKASVALLQNRADVVFDPNLVKEEDIKEEIEDAGFEAEIL   70 (74)
T ss_dssp             EEEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGGGTEEEEEECTTTCCHHHHHHHHHHHTCEEEEE
T ss_pred             cEEEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHCCCceEEc
Confidence            6688999 999999999999999999999999999999999987   2368999999999999987654

>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta, cisplatin, platinum, chaperone, ION transport, metal-binding, metal transport; HET: TCE; 1.60A {Homo sapiens} SCOP: d.58.17.1 PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B 1fe0_A* 3iwx_A 3cjk_A

Probab=99.58  E-value=3.5e-14  Score=69.68  Aligned_cols=65  Identities=40%  Similarity=0.705  Sum_probs=58.6

Q ss_pred             eEEEEEeCCcChhhHHHHHHHHhCCCCeeEEEEEecCCEEEEEecCCHHHHHHHHHhcCCceEEec
Q 033693            3 QTVVLKVGMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKTGKKTAFWE   68 (113)
Q Consensus         3 ~~~~~~ig~~c~~c~~~i~~~~~~~~gv~~~~~~~~~~~~~v~~~~~~~~i~~~i~~~g~~~~~~~   68 (113)
                      ++..|++||+|.+|++++++++++++|+ .+.+|+.++++.+....+++++.+.+.+.||.+....
T Consensus         2 ~~~~~~vgm~C~~C~~~i~~~l~~~~gV-~v~v~~~~~~~~v~~~~~~~~i~~~i~~~Gy~~~~~~   66 (68)
T 3iwl_A            2 PKHEFSVDMTCGGCAEAVSRVLNKLGGV-KYDIDLPNKKVCIESEHSMDTLLATLKKTGKTVSYLG   66 (68)
T ss_dssp             CEEEEEECCCSHHHHHHHHHHHHHHCSE-EEEEETTTTEEEEEESSCHHHHHHHHHTTCSCEEEEE
T ss_pred             ceEEEEECcCcHHHHHHHHHHHHcCCCe-EEEEEcCCCEEEEEecCCHHHHHHHHHHcCCceEecC
Confidence            4567777999999999999999999999 9999999999999877789999999999999876543

>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}

Probab=99.57  E-value=6.8e-14  Score=78.17  Aligned_cols=90  Identities=28%  Similarity=0.483  Sum_probs=72.0

Q ss_pred             ceEEEEEe-CCcChhhHHHHHHHHhCCCCeeEEEEEecCCEEEEE-e--cCCHHHHHHHHHhcCCceEEecCCCCCceeE
Q 033693            2 SQTVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVK-G--NVQPDAVLQTVSKTGKKTAFWERGKTSTSRI   77 (113)
Q Consensus         2 ~~~~~~~i-g~~c~~c~~~i~~~~~~~~gv~~~~~~~~~~~~~v~-~--~~~~~~i~~~i~~~g~~~~~~~~~~~~~~~~   77 (113)
                      +++..|.+ ||+|.+|+..+++.+++++|+....+++.+++..+. .  ....+.+.+.+.+.||...............
T Consensus         3 ~~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~~~~~~~~~~~~   82 (149)
T 2ew9_A            3 PQKCFLQIKGMTCASCVSNIERNLQKEAGVLSVLVALMAGKAEIKYDPEVIQPLEIAQFIQDLGFEAAVMEDYAGSDGNI   82 (149)
T ss_dssp             CEEEEEEEECCCSSSHHHHHHHHHHTTSSCCCEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTCEEEECSCSCCSSSEE
T ss_pred             cEEEEEEECCeecHHHHHHHHHHHhcCCCcEEEEEEecCCEEEEEEcCCCCCHHHHHHHHhcCCCceEeeccccccccee
Confidence            46788999 999999999999999999999999999999998886 2  3567889999999999876533211122345


Q ss_pred             EEEec-ccchhhhcc
Q 033693           78 RFEAH-RSCSCCLRY   91 (113)
Q Consensus        78 ~~~~~-~~c~~c~~~   91 (113)
                      .+.+. |+|++|..+
T Consensus        83 ~~~v~gm~C~~C~~~   97 (149)
T 2ew9_A           83 ELTITGMTCASCVHN   97 (149)
T ss_dssp             EEEEESCCSHHHHHH
T ss_pred             EEEEEeccCHHHHHH
Confidence            67776 999999764

>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A

Probab=99.55  E-value=1.9e-13  Score=67.05  Aligned_cols=64  Identities=25%  Similarity=0.624  Sum_probs=58.8

Q ss_pred             eEEEEEe-CCcChhhHHHHHHHHhCCCCeeEEEEEecCCEEEEE--ecCCHHHHHHHHHhcCCceEE
Q 033693            3 QTVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVK--GNVQPDAVLQTVSKTGKKTAF   66 (113)
Q Consensus         3 ~~~~~~i-g~~c~~c~~~i~~~~~~~~gv~~~~~~~~~~~~~v~--~~~~~~~i~~~i~~~g~~~~~   66 (113)
                      ++..+.+ ||+|.+|++.+++.+++++|+..+.+++.++++.+.  ...+++++.+.+.+.||.+.+
T Consensus         2 ~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~Gy~~~~   68 (69)
T 4a4j_A            2 QTINLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVERAGYHARV   68 (69)
T ss_dssp             EEEEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTCCHHHHHHHHHHTTCEEEE
T ss_pred             CEEEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCHHHHHHHHHHcCCceEe
Confidence            5678999 999999999999999999999999999999999988  567899999999999998653

>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}

Probab=99.54  E-value=7.3e-14  Score=69.43  Aligned_cols=66  Identities=27%  Similarity=0.512  Sum_probs=59.4

Q ss_pred             CceEEEEEe-CCcChhhHHHHHHHHhCCCCeeEEEEEecCCEEEEEecCCHHHHHHHHHhcCCceEEec
Q 033693            1 MSQTVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKTGKKTAFWE   68 (113)
Q Consensus         1 ~~~~~~~~i-g~~c~~c~~~i~~~~~~~~gv~~~~~~~~~~~~~v~~~~~~~~i~~~i~~~g~~~~~~~   68 (113)
                      |+++..|.+ ||+|.+|+.++++++++ +|+..+.+++.++++.+... +++++.+.+.+.||...+..
T Consensus         3 ~m~~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~~~~~~v~~~-~~~~i~~~i~~~Gy~~~~~~   69 (73)
T 3fry_A            3 SVEKIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLNEAVVAGNKE-DVDKYIKAVEAAGYQAKLRS   69 (73)
T ss_dssp             CCEEEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSSEEEEEEEGG-GHHHHHHHHHHTTCEEEECC
T ss_pred             ccEEEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEccCCEEEEEEC-CHHHHHHHHHHcCCceEecC
Confidence            457789999 99999999999999999 99999999999999998854 88999999999999876543

>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A

Probab=99.52  E-value=5e-13  Score=65.53  Aligned_cols=66  Identities=26%  Similarity=0.630  Sum_probs=57.1

Q ss_pred             CceEEEEEe-CCcChhhHHHHHHHHhCCCCeeEEEEEecCCEEEEE--ecCCHHHHHHHHHhcCCceEE
Q 033693            1 MSQTVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVK--GNVQPDAVLQTVSKTGKKTAF   66 (113)
Q Consensus         1 ~~~~~~~~i-g~~c~~c~~~i~~~~~~~~gv~~~~~~~~~~~~~v~--~~~~~~~i~~~i~~~g~~~~~   66 (113)
                      |+++..+.+ ||+|++|+..+++.+.+++|+..+.+++..+.+.+.  +....+.+.+.+.+.||...+
T Consensus         1 m~~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~G~~~~~   69 (71)
T 2xmw_A            1 MAQTINLQLEGMRCAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVERAGYHARV   69 (71)
T ss_dssp             -CEEEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEC---CHHHHHHHHHHHTCEEEE
T ss_pred             CCcEEEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCCCHHHHHHHHHHcCCCcee
Confidence            778899999 999999999999999999999999999999999887  335678889999999997653

>1cc8_A Protein (metallochaperone ATX1); copper transport, mercury coordination, metal transport; 1.02A {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1cc7_A 1fd8_A 1fes_A 2ggp_A 3k7r_A

Probab=99.49  E-value=1.1e-12  Score=65.03  Aligned_cols=66  Identities=36%  Similarity=0.579  Sum_probs=59.4

Q ss_pred             CceEEEEEeCCcChhhHHHHHHHHhCCC-CeeEEEEEecCCEEEEEecCCHHHHHHHHHhcCCceEE
Q 033693            1 MSQTVVLKVGMSCEGCVGAVKRVLGKMD-GVETFDIDLKEQKVTVKGNVQPDAVLQTVSKTGKKTAF   66 (113)
Q Consensus         1 ~~~~~~~~ig~~c~~c~~~i~~~~~~~~-gv~~~~~~~~~~~~~v~~~~~~~~i~~~i~~~g~~~~~   66 (113)
                      |+++..|+++|+|.+|++++++.+++++ |+..+++|+.++++.+....+.+++.+.+.+.||....
T Consensus         3 ~m~~~~~~v~m~C~~C~~~ie~~l~~~~~GV~~~~v~~~~~~~~v~~~~~~~~i~~~i~~~Gy~~~~   69 (73)
T 1cc8_A            3 EIKHYQFNVVMTCSGCSGAVNKVLTKLEPDVSKIDISLEKQLVDVYTTLPYDFILEKIKKTGKEVRS   69 (73)
T ss_dssp             CCEEEEEEECCCSHHHHHHHHHHHHTTTTSEEEEEEETTTTEEEEEESSCHHHHHHHHHTTSSCEEE
T ss_pred             CceEEEEEEeeECHHHHHHHHHHHHhCCCCceEEEEECCCCEEEEEEeCCHHHHHHHHHHhCCCcee
Confidence            3467788889999999999999999999 99999999999999998667889999999999998654

>1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha- beta, hydrolase; NMR {Escherichia coli} SCOP: d.58.17.1 PDB: 1mwz_A

Probab=99.42  E-value=8.2e-12  Score=61.65  Aligned_cols=64  Identities=23%  Similarity=0.383  Sum_probs=55.9

Q ss_pred             eEEEEEe-CCcChhhHHHHHHHHhCCCCeeEEEEEecCCEEEEE-ecCCHHHHHHHHHhcCCceEE
Q 033693            3 QTVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVK-GNVQPDAVLQTVSKTGKKTAF   66 (113)
Q Consensus         3 ~~~~~~i-g~~c~~c~~~i~~~~~~~~gv~~~~~~~~~~~~~v~-~~~~~~~i~~~i~~~g~~~~~   66 (113)
                      .+..|.+ ||+|.+|++.+++.+.+++|+..+.+++.++.+.+. .....+.+.+.+.+.||....
T Consensus         3 ~~~~~~v~gm~C~~C~~~ie~~l~~~~gV~~~~v~~~~~~~~v~~~~~~~~~i~~~i~~~Gy~~~~   68 (73)
T 1mwy_A            3 TRYSWKVSGMDCAACARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESALQKAGYSLRD   68 (73)
T ss_dssp             EEEEEEEESCCSTTHHHHHHHHHHTSSSEEEEEEETTTTEEEEEESSCCHHHHHHHHHHHTCEEEE
T ss_pred             eEEEEEECCcCCHHHHHHHHHHHhcCCCeeEEEEEecCCEEEEEECCCCHHHHHHHHHHcCCcccc
Confidence            4578999 999999999999999999999999999999999887 323467788889999998654

>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis}

Probab=99.37  E-value=1.5e-11  Score=60.17  Aligned_cols=62  Identities=29%  Similarity=0.573  Sum_probs=55.4

Q ss_pred             eEEEEEe-CCcChhhHHHHHHHHhCCCCeeEEEEEecCCEEEEE-e--cCCHHHHHHHHHhcCCce
Q 033693            3 QTVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVK-G--NVQPDAVLQTVSKTGKKT   64 (113)
Q Consensus         3 ~~~~~~i-g~~c~~c~~~i~~~~~~~~gv~~~~~~~~~~~~~v~-~--~~~~~~i~~~i~~~g~~~   64 (113)
                      .+..+.+ ||+|++|+..+++.+.+++|+..+.+++..+.+.+. .  ....+.+.+.+.+.||..
T Consensus         5 ~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~   70 (71)
T 2l3m_A            5 EQLTLQVEGMSCGHCVNAIESSVKELNGVEQVKVQLAEGTVEVTIDSSVVTLKDIVAVIEDQGYDV   70 (71)
T ss_dssp             EEEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEETTTSCHHHHHHHHHHTTCEE
T ss_pred             EEEEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCCC
Confidence            5678999 999999999999999999999999999999999887 2  357888999999999864

>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal homeostasis, chaperone, ION transport, metal- binding, alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A

Probab=99.37  E-value=2.8e-11  Score=59.91  Aligned_cols=64  Identities=25%  Similarity=0.599  Sum_probs=56.8

Q ss_pred             eEEEEEe-CCcChhhHHHHHHHHhCCCCeeEEEEEecCCEEEEE-e--cCCHHHHHHHHHhcCCceEE
Q 033693            3 QTVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVK-G--NVQPDAVLQTVSKTGKKTAF   66 (113)
Q Consensus         3 ~~~~~~i-g~~c~~c~~~i~~~~~~~~gv~~~~~~~~~~~~~v~-~--~~~~~~i~~~i~~~g~~~~~   66 (113)
                      .+..+.+ ||+|.+|+..+++.+.+++|+..+.+++..+.+.+. .  ....+.+.+.+.+.||....
T Consensus         2 ~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~   69 (75)
T 3cjk_B            2 NSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDMGFDAVI   69 (75)
T ss_dssp             EEEEEEECCCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHTTCCEEE
T ss_pred             cEEEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCceEe
Confidence            4578999 999999999999999999999999999999999887 2  35788899999999998654

>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A

Probab=99.36  E-value=1.8e-11  Score=68.49  Aligned_cols=81  Identities=23%  Similarity=0.571  Sum_probs=66.7

Q ss_pred             eEEEEEe-CCcChhhHHHHHHHHhCCCCeeEEEEEecCCEEEEE-e--cCCHHHHHHHHHhcCCceEEecCCCCCceeEE
Q 033693            3 QTVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVK-G--NVQPDAVLQTVSKTGKKTAFWERGKTSTSRIR   78 (113)
Q Consensus         3 ~~~~~~i-g~~c~~c~~~i~~~~~~~~gv~~~~~~~~~~~~~v~-~--~~~~~~i~~~i~~~g~~~~~~~~~~~~~~~~~   78 (113)
                      .+..+.+ ||+|++|+..+++.+.+++|+..+.+++..+...+. .  ......+.+.+.+.||...        .....
T Consensus         6 ~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~--------~~~~~   77 (151)
T 1p6t_A            6 KEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIEKLGYHVV--------TEKAE   77 (151)
T ss_dssp             EEEEEEEESCCSSHHHHHHHHHHTTSSSEEEEEEEGGGTEEEEEECTTTSCHHHHHHHHHHHTCEEC--------CEEEE
T ss_pred             eEEEEEECCCcCHHHHHHHHHHHhcCCCeeEEEEEccCCEEEEEEcCCcCCHHHHHHHHHHcCCccc--------ccccE
Confidence            4567999 999999999999999999999999999999998876 2  3567788888999998642        23456


Q ss_pred             EEec-ccchhhhcc
Q 033693           79 FEAH-RSCSCCLRY   91 (113)
Q Consensus        79 ~~~~-~~c~~c~~~   91 (113)
                      +.+. |+|++|.++
T Consensus        78 ~~v~gm~C~~C~~~   91 (151)
T 1p6t_A           78 FDIEGMTCAACANR   91 (151)
T ss_dssp             EEESSCCSSSHHHH
T ss_pred             EEecCCCCHHHHHH
Confidence            6776 999999764

>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A

Probab=99.36  E-value=2.1e-11  Score=59.82  Aligned_cols=63  Identities=27%  Similarity=0.559  Sum_probs=56.1

Q ss_pred             eEEEEEe-CCcChhhHHHHHHHHhCCCCeeEEEEEecCCEEEEE-e--cCCHHHHHHHHHhcCCceE
Q 033693            3 QTVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVK-G--NVQPDAVLQTVSKTGKKTA   65 (113)
Q Consensus         3 ~~~~~~i-g~~c~~c~~~i~~~~~~~~gv~~~~~~~~~~~~~v~-~--~~~~~~i~~~i~~~g~~~~   65 (113)
                      ++..+.+ ||+|.+|+..+++.+.+++|+..+.+++..+.+.+. .  ....+.+.+.+.+.||...
T Consensus         3 ~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~   69 (72)
T 1osd_A            3 QTVTLSVPGMTCSACPITVKKAISKVEGVSKVDVTFETRQAVVTFDDAKTSVQKLTKATADAGYPSS   69 (72)
T ss_dssp             EEEEEECTTCCSTTHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEETTTCCHHHHHHHHHHTTCCCE
T ss_pred             eEEEEEECCeEcHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHhcCCCeE
Confidence            4578999 999999999999999999999999999999999887 2  3578889999999999754

>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A

Probab=99.35  E-value=1.3e-11  Score=60.57  Aligned_cols=63  Identities=25%  Similarity=0.560  Sum_probs=56.1

Q ss_pred             eEEEEEe-CCcChhhHHHHHHHHhCCCCeeEEEEEecCCEEEEE-e--cCCHHHHHHHHHhcCCceE
Q 033693            3 QTVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVK-G--NVQPDAVLQTVSKTGKKTA   65 (113)
Q Consensus         3 ~~~~~~i-g~~c~~c~~~i~~~~~~~~gv~~~~~~~~~~~~~v~-~--~~~~~~i~~~i~~~g~~~~   65 (113)
                      ++..+.+ ||+|.+|+..+++.+.+++|+..+.+++..+.+.+. .  ....+.+.+.+.+.||...
T Consensus         3 ~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~   69 (72)
T 1aw0_A            3 QETVINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLANSNGTVEYDPLLTSPETLRGAIEDMGFDAT   69 (72)
T ss_dssp             EEEEEEEECCCHHHHHHHHHHHHHTSTTCCCEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTCEEE
T ss_pred             eEEEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCcCCHHHHHHHHHHCCCCcE
Confidence            5678999 999999999999999999999999999999999887 2  3567889999999999754

>1y3j_A Copper-transporting ATPase 1; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta structure, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1y3k_A

Probab=99.34  E-value=6.7e-12  Score=62.59  Aligned_cols=66  Identities=24%  Similarity=0.491  Sum_probs=57.7

Q ss_pred             ceEEEEEe-CCcChhhHHHHHHHHhCCCCeeEEEEEecCCEEEEE-e--cCCHHHHHHHHHhcCCceEEe
Q 033693            2 SQTVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVK-G--NVQPDAVLQTVSKTGKKTAFW   67 (113)
Q Consensus         2 ~~~~~~~i-g~~c~~c~~~i~~~~~~~~gv~~~~~~~~~~~~~v~-~--~~~~~~i~~~i~~~g~~~~~~   67 (113)
                      |++..+.+ ||+|++|+..+++.+.+++|+..+.+++..+.+.+. .  ....+.+.+.+...||.....
T Consensus         2 m~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~   71 (77)
T 1y3j_A            2 SSKCYIQVTGMTCASCVANIERNLRREEGIYSILVALMAGKAEVRYNPAVIQPPMIAEFIRELGFGATVI   71 (77)
T ss_dssp             CEEEEEEESCGGGCSHHHHHHHHHTTSSSEEECCCBTTTTBEEEEECTTTSCHHHHHHHHHHHTSCEEEE
T ss_pred             CEEEEEEECCeeCHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCceEEC
Confidence            35678999 999999999999999999999999999999999887 2  356788999999999987654

>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.34  E-value=5.1e-11  Score=62.35  Aligned_cols=67  Identities=28%  Similarity=0.536  Sum_probs=59.5

Q ss_pred             EEEEEeCCcChhhHHHHHHHHhCCCCeeEEEEEecCCEEEEEecCCHHHHHHHHHhcCCceEEecCC
Q 033693            4 TVVLKVGMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKTGKKTAFWERG   70 (113)
Q Consensus         4 ~~~~~ig~~c~~c~~~i~~~~~~~~gv~~~~~~~~~~~~~v~~~~~~~~i~~~i~~~g~~~~~~~~~   70 (113)
                      +..|+|.|+|.+|++++++++++++||..+.+|+..+++.+....+.+++.+.+.+.||.+......
T Consensus        20 ~~~l~V~m~C~~C~~~Ie~aL~~l~GV~~v~vdl~~~~~~V~~~~~~~~i~~~i~~~Gy~~~~~~~~   86 (98)
T 2crl_A           20 TLEFAVQMTCQSCVDAVRKSLQGVAGVQDVEVHLEDQMVLVHTTLPSQEVQALLEGTGRQAVLKGMG   86 (98)
T ss_dssp             EEEEEECCCSHHHHHHHHHTTTTCTTCCEEEEETTTTEEEEEESSCHHHHHHHHHTTTSCEEEEESC
T ss_pred             EEEEEEeeECHHHHHHHHHHHHcCCCceEEEEECCCCEEEEEEeCCHHHHHHHHHHhCCceEEccCC
Confidence            5667778999999999999999999999999999999999986678899999999999987765443

>2qif_A Copper chaperone COPZ; tetranuclear Cu(I) cluster; 1.50A {Bacillus subtilis} SCOP: d.58.17.1 PDB: 3i9z_A 1k0v_A 1p8g_A

Probab=99.33  E-value=4.2e-11  Score=57.91  Aligned_cols=62  Identities=32%  Similarity=0.627  Sum_probs=54.9

Q ss_pred             eEEEEEe-CCcChhhHHHHHHHHhCCCCeeEEEEEecCCEEEEE-e--cCCHHHHHHHHHhcCCce
Q 033693            3 QTVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVK-G--NVQPDAVLQTVSKTGKKT   64 (113)
Q Consensus         3 ~~~~~~i-g~~c~~c~~~i~~~~~~~~gv~~~~~~~~~~~~~v~-~--~~~~~~i~~~i~~~g~~~   64 (113)
                      .+..+.+ ||+|++|+..+++.+.+++|+..+.+++..+.+.+. .  ....+.+.+.+...||..
T Consensus         2 ~~~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~   67 (69)
T 2qif_A            2 EQKTLQVEGMSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDVSFDADKVSVKDIADAIEDQGYDV   67 (69)
T ss_dssp             EEEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHTTCEE
T ss_pred             eEEEEEECCcccHHHHHHHHHHHhcCCCeeEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCCc
Confidence            4568999 999999999999999999999999999999999887 2  356788999999999864

>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A

Probab=99.33  E-value=2.4e-11  Score=62.56  Aligned_cols=66  Identities=18%  Similarity=0.425  Sum_probs=56.9

Q ss_pred             EEEEEe-CCcChhhHHHHHHHHhCCCCeeEEEEEecCCEEEEE-e--cCCHHHHHHHHHhc---CCceEEecC
Q 033693            4 TVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVK-G--NVQPDAVLQTVSKT---GKKTAFWER   69 (113)
Q Consensus         4 ~~~~~i-g~~c~~c~~~i~~~~~~~~gv~~~~~~~~~~~~~v~-~--~~~~~~i~~~i~~~---g~~~~~~~~   69 (113)
                      +..+.| ||+|++|++.+++.+++++||..+.+++.++++.+. .  ....+.+.+.+.+.   ||.+....+
T Consensus         4 ~~~l~v~Gm~C~~C~~~Ie~~L~~~~GV~~v~v~l~~~~~~V~~~~~~~~~~~i~~~i~~~g~Ggy~~~~~~~   76 (90)
T 2g9o_A            4 TATFIIDGMHCKSCVSNIESTLSALQYVSSIVVSLENRSAIVVYNASSVTPESLRKAIEAVSPGLYRVSITSE   76 (90)
T ss_dssp             EEEEEEESCCHHHHHHHHHHHHTTCTTEEEEEEETTTTEEEEEECCSSCCTHHHHHHHHTTSTTTCEEECCCC
T ss_pred             EEEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEEccCCEEEEEECCCCCCHHHHHHHHHhccCCCeEEEEeCC
Confidence            567999 999999999999999999999999999999999987 2  35678899999999   487655433

>2k2p_A Uncharacterized protein ATU1203; putative metal-binding domain ATU1203, ontario centre for ST proteomics, structural genomics; NMR {Agrobacterium tumefaciens str}

Probab=99.33  E-value=5.3e-12  Score=64.46  Aligned_cols=61  Identities=20%  Similarity=0.369  Sum_probs=55.9

Q ss_pred             EEEEEe-CCcChhhHHHHHHHHhCCCCeeEEEEEecCCEEEEEecCCHHHHHHHHHhcCCce
Q 033693            4 TVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKTGKKT   64 (113)
Q Consensus         4 ~~~~~i-g~~c~~c~~~i~~~~~~~~gv~~~~~~~~~~~~~v~~~~~~~~i~~~i~~~g~~~   64 (113)
                      +..|.+ ||+|.+|++.+++.+++++||..+.+++.++++.+....+++++.+.+.+.||.+
T Consensus        23 ~~~l~V~Gm~C~~C~~~Ie~aL~~~~GV~~v~v~l~~~~~~V~~~~~~~~i~~~i~~~Gy~~   84 (85)
T 2k2p_A           23 GLSFHVEDMTCGHCAGVIKGAIEKTVPGAAVHADPASRTVVVGGVSDAAHIAEIITAAGYTP   84 (85)
T ss_dssp             EEEEECTTCCHHHHHHHHHHHHHHHSTTCEEEEETTTTEEEEESCCCHHHHHHHHHHTTCCC
T ss_pred             EEEEEECCCCCHHHHHHHHHHHhcCCCeeEEEEECCCCEEEEEecCCHHHHHHHHHHcCCCC
Confidence            567999 9999999999999999999999999999999999985577899999999999863

>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A

Probab=99.33  E-value=1.7e-11  Score=61.39  Aligned_cols=64  Identities=25%  Similarity=0.599  Sum_probs=56.7

Q ss_pred             eEEEEEe-CCcChhhHHHHHHHHhCCCCeeEEEEEecCCEEEEE-e--cCCHHHHHHHHHhcCCceEE
Q 033693            3 QTVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVK-G--NVQPDAVLQTVSKTGKKTAF   66 (113)
Q Consensus         3 ~~~~~~i-g~~c~~c~~~i~~~~~~~~gv~~~~~~~~~~~~~v~-~--~~~~~~i~~~i~~~g~~~~~   66 (113)
                      ++..+.+ ||+|.+|+..+++.+++++|+..+.+++..+.+.+. .  ....+.+.+.+.+.||....
T Consensus         8 ~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~   75 (79)
T 1kvi_A            8 NSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDMGFDAVI   75 (79)
T ss_dssp             EEEEEEECCCCSTTTHHHHHHHHHHSSSCCCEEEEGGGTEEEEEECTTTCCHHHHHHHHHHHCCCEEE
T ss_pred             EEEEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCCCCHHHHHHHHHHCCCceEe
Confidence            4678999 999999999999999999999999999999999887 2  35678899999999998654

>2xmm_A SSR2857 protein, ATX1; metal transport, copper homeostasis, chaperone, P-type atpas; 1.65A {Synechocystis SP} PDB: 2xmv_A 1sb6_A 2xmj_A 2xmk_A 2xmt_A 2xmu_A

Probab=99.33  E-value=5.6e-12  Score=60.47  Aligned_cols=60  Identities=25%  Similarity=0.518  Sum_probs=54.7

Q ss_pred             EEEEe-CCcChhhHHHHHHHHhCCCCeeEEEEEecCCEEEEEecCCHHHHHHHHHhcCCce
Q 033693            5 VVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKTGKKT   64 (113)
Q Consensus         5 ~~~~i-g~~c~~c~~~i~~~~~~~~gv~~~~~~~~~~~~~v~~~~~~~~i~~~i~~~g~~~   64 (113)
                      ..+.+ ||+|.+|+..+++.+++++|+..+.+++..+++.+....+.+.+.+.+.+.||..
T Consensus         3 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~i~~~i~~~G~~~   63 (64)
T 2xmm_A            3 IQLTVPTIACEACAEAVTKAVQNEDAQATVQVDLTSKKVTITSALGEEQLRTAIASAGYEV   63 (64)
T ss_dssp             EEEECTTCCSHHHHHHHHHHHHHHCTTCEEEECTTTCEEEEECSSCHHHHHHHHHHTTCCC
T ss_pred             EEEEECCcCcHHHHHHHHHHHhcCCCcEEEEEEecCCEEEEEecCCHHHHHHHHHHcCCCC
Confidence            47899 9999999999999999999999999999999999885567888999999999863

>2roe_A Heavy metal binding protein; NMR {Thermus thermophilus} PDB: 2rog_A

Probab=99.32  E-value=1.2e-11  Score=59.95  Aligned_cols=60  Identities=40%  Similarity=0.711  Sum_probs=54.3

Q ss_pred             EEEe-CCcChhhHHHHHHHHhCCCCeeEEEEEecCCEEEEEecCCHHHHHHHHHhcCCceE
Q 033693            6 VLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKTGKKTA   65 (113)
Q Consensus         6 ~~~i-g~~c~~c~~~i~~~~~~~~gv~~~~~~~~~~~~~v~~~~~~~~i~~~i~~~g~~~~   65 (113)
                      .+.+ ||+|.+|+..+++.+++++|+..+.+++..+++.+....+.+.+.+.+.+.||...
T Consensus         3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~i~~~i~~~Gy~~~   63 (66)
T 2roe_A            3 KLKVEGMTCNHCVMAVTKALKKVPGVEKVEVSLEKGEALVEGTADPKALVQAVEEEGYKAE   63 (66)
T ss_dssp             CEEEECCCSHHHHHHHHHHHHTSTTCCCEEECSSSCBEEECSCCCHHHHHHHHHTTTCEEE
T ss_pred             EEEECCeEcHHHHHHHHHHHHcCCCeEEEEEEeCCCEEEECCCCCHHHHHHHHHHcCCCcE
Confidence            5789 99999999999999999999999999999999888645678899999999999764

>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A

Probab=99.31  E-value=2.8e-11  Score=61.44  Aligned_cols=65  Identities=22%  Similarity=0.484  Sum_probs=57.2

Q ss_pred             eEEEEEe-CCcChhhHHHHHHHHhCCCCeeEEEEEecCCEEEEE-e--cCCHHHHHHHHHhcCCceEEe
Q 033693            3 QTVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVK-G--NVQPDAVLQTVSKTGKKTAFW   67 (113)
Q Consensus         3 ~~~~~~i-g~~c~~c~~~i~~~~~~~~gv~~~~~~~~~~~~~v~-~--~~~~~~i~~~i~~~g~~~~~~   67 (113)
                      .+..+.+ ||+|.+|++.+++.+.+++|+..+++++..+.+.+. .  ....+.+.+.+.+.||.....
T Consensus         9 ~~~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~   77 (84)
T 1q8l_A            9 VVLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIVYQPHLISVEEMKKQIEAMGFPAFVK   77 (84)
T ss_dssp             EEEEEEECCTTTCSSCHHHHHHHHTCTTEEEEEECSTTTEEEEEECTTTCCHHHHHHHHHHTTCCEECS
T ss_pred             eEEEEEECCcccHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCceEec
Confidence            3567999 999999999999999999999999999999999887 2  357888999999999986543

>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A

Probab=99.30  E-value=2.8e-11  Score=58.94  Aligned_cols=60  Identities=30%  Similarity=0.547  Sum_probs=53.9

Q ss_pred             EEEe-CCcChhhHHHHHHHHhCCCCeeEEEEEecCCEEEEE--ecCCHHHHHHHHHhcCCceE
Q 033693            6 VLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVK--GNVQPDAVLQTVSKTGKKTA   65 (113)
Q Consensus         6 ~~~i-g~~c~~c~~~i~~~~~~~~gv~~~~~~~~~~~~~v~--~~~~~~~i~~~i~~~g~~~~   65 (113)
                      .+.+ ||+|.+|+..+++.+++++|+..+.+++..+.+.+.  +....+++...+.+.||...
T Consensus         3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~Gy~~~   65 (69)
T 2kt2_A            3 HLKITGMTCDSCAAHVKEALEKVPGVQSALVSYPKGTAQLAIVPGTSPDALTAAVAGLGYKAT   65 (69)
T ss_dssp             CEEEESSCSTHHHHHHHHHHHHSTTEEEEEEETTTTEEEEEECTTSCHHHHHHHHHTTTSEEE
T ss_pred             EEEECCcccHHHHHHHHHHHHcCCCeeEEEEEccCCEEEEEECCCCCHHHHHHHHHHCCCceE
Confidence            5789 999999999999999999999999999999999887  33578889999999999764

>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}

Probab=99.30  E-value=3e-11  Score=58.20  Aligned_cols=60  Identities=20%  Similarity=0.592  Sum_probs=53.4

Q ss_pred             EEEEEe-CCcChhhHHHHHHHHhCCCCeeEEEEEecCCEEEEE--ecCCHHHHHHHHHhcCCc
Q 033693            4 TVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVK--GNVQPDAVLQTVSKTGKK   63 (113)
Q Consensus         4 ~~~~~i-g~~c~~c~~~i~~~~~~~~gv~~~~~~~~~~~~~v~--~~~~~~~i~~~i~~~g~~   63 (113)
                      +..+.+ ||+|.+|+..+++.+++++|+..+.+++..+++.+.  +....+.+.+.+.+.||.
T Consensus         2 ~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~G~~   64 (66)
T 1yg0_A            2 KATFQVPSITCNHCVDKIEKFVGEIEGVSFIDVSVEKKSVVVEFDAPATQDLIKEALLDAGQE   64 (66)
T ss_dssp             EEEECCTTCSCSHHHHHHHHHHTTSSSEEEEEEETTTTEEEEEECTTCCHHHHHHHHHHHTCC
T ss_pred             eEEEEECCcccHHHHHHHHHHHhcCCCceEEEEEcCCCEEEEEECCCCCHHHHHHHHHHcCCC
Confidence            357899 999999999999999999999999999999999987  234778889999999985

>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein interaction, copper(I), metal homeostasis, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A

Probab=99.30  E-value=2.9e-11  Score=59.72  Aligned_cols=63  Identities=25%  Similarity=0.516  Sum_probs=55.0

Q ss_pred             EEEEEe-CCcChhhHHHHHHHHhCCCCeeEEEEEecCCEEEEE-e--cCCHHHHHHHHHhcCCceEE
Q 033693            4 TVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVK-G--NVQPDAVLQTVSKTGKKTAF   66 (113)
Q Consensus         4 ~~~~~i-g~~c~~c~~~i~~~~~~~~gv~~~~~~~~~~~~~v~-~--~~~~~~i~~~i~~~g~~~~~   66 (113)
                      +..+.+ ||+|.+|++.+++.+.+++|+..+.+++..+.+.+. .  ....+.+.+.+.+.||....
T Consensus         5 ~~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~   71 (75)
T 1yjr_A            5 VLELVVRGMTCASCVHKIESSLTKHRGILYCSVALATNKAHIKYDPEIIGPRDIIHTIESLGFEPSL   71 (75)
T ss_dssp             CEEEEEETCCTTTHHHHHHHHHTTSTTEEEEEEETTTTEEEEEECTTTTHHHHHHHHHHHHHCEEEE
T ss_pred             EEEEEECCcccHHHHHHHHHHHHcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCCcee
Confidence            578999 999999999999999999999999999999999887 2  24567788889999997643

>1opz_A Potential copper-transporting ATPase; mutation, folding, abbab fold, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 1oq3_A 1oq6_A

Probab=99.29  E-value=6.6e-11  Score=58.49  Aligned_cols=63  Identities=24%  Similarity=0.546  Sum_probs=55.7

Q ss_pred             eEEEEEe-CCcChhhHHHHHHHHhCCCCeeEEEEEecCCEEEEE---ecCCHHHHHHHHHhcCCceE
Q 033693            3 QTVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVK---GNVQPDAVLQTVSKTGKKTA   65 (113)
Q Consensus         3 ~~~~~~i-g~~c~~c~~~i~~~~~~~~gv~~~~~~~~~~~~~v~---~~~~~~~i~~~i~~~g~~~~   65 (113)
                      ++..+.+ ||+|.+|+..+++.+.+++|+..+.+++..+.+.+.   .....+.+.+.+.+.||...
T Consensus         6 ~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~   72 (76)
T 1opz_A            6 KEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIEKLGYHVV   72 (76)
T ss_dssp             EEEEEEEESCCSTTHHHHHHHHHHTSTTEEEEEEEGGGTEEEEEECTTTCCHHHHHHHHHHHTCEEE
T ss_pred             eEEEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHCCCcee
Confidence            4568999 999999999999999999999999999999999887   23578889999999999754

>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens}

Probab=99.28  E-value=5.9e-11  Score=69.54  Aligned_cols=59  Identities=25%  Similarity=0.556  Sum_probs=52.0

Q ss_pred             eEEEEEe-CCcChhhHHHHHHHHhCCCCeeEEEEEecCCEEEEE-e--cCCHHHHHHHHHhcC
Q 033693            3 QTVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVK-G--NVQPDAVLQTVSKTG   61 (113)
Q Consensus         3 ~~~~~~i-g~~c~~c~~~i~~~~~~~~gv~~~~~~~~~~~~~v~-~--~~~~~~i~~~i~~~g   61 (113)
                      .+..|.| ||+|.+|++.+++.+.+++||..+.+++..+++.+. .  ....+.+.+.+...+
T Consensus        20 ~~~~l~v~Gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~~   82 (202)
T 2rop_A           20 VTLQLRIDGMHCKSCVLNIEENIGQLLGVQSIQVSLENKTAQVKYDPSCTSPVALQRAIEALP   82 (202)
T ss_dssp             CEEEEEEESGGGSTHHHHHHHHTTSBTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHTTSS
T ss_pred             EEEEEEECCeEcHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence            3567999 999999999999999999999999999999999987 2  356788899998883

>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1

Probab=99.28  E-value=7.5e-11  Score=57.08  Aligned_cols=60  Identities=33%  Similarity=0.684  Sum_probs=53.8

Q ss_pred             EEEe-CCcChhhHHHHHHHHhCCCCeeEEEEEecCCEEEEE-e--cCCHHHHHHHHHhcCCceE
Q 033693            6 VLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVK-G--NVQPDAVLQTVSKTGKKTA   65 (113)
Q Consensus         6 ~~~i-g~~c~~c~~~i~~~~~~~~gv~~~~~~~~~~~~~v~-~--~~~~~~i~~~i~~~g~~~~   65 (113)
                      .+.+ ||+|.+|+..+++.+++++|+..+.+++..+.+.+. .  ....+++.+.+.+.||...
T Consensus         3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~   66 (68)
T 1cpz_A            3 EFSVKGMSCNHCVARIEEAVGRISGVKKVKVQLKKEKAVVKFDEANVQATEICQAINELGYQAE   66 (68)
T ss_dssp             EEEESCCCSSSHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHTTSSCEE
T ss_pred             EEEECCeeCHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCCcc
Confidence            5889 999999999999999999999999999999999887 2  3578889999999999754

>1jww_A Potential copper-transporting ATPase; beta-alpha-beta-BETA-alpha-beta, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 2voy_A 1kqk_A

Probab=99.28  E-value=5.4e-11  Score=59.50  Aligned_cols=66  Identities=23%  Similarity=0.490  Sum_probs=57.6

Q ss_pred             ceEEEEEe-CCcChhhHHHHHHHHhCCCCeeEEEEEecCCEEEEE-e--cCCHHHHHHHHHhcCCceEEe
Q 033693            2 SQTVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVK-G--NVQPDAVLQTVSKTGKKTAFW   67 (113)
Q Consensus         2 ~~~~~~~i-g~~c~~c~~~i~~~~~~~~gv~~~~~~~~~~~~~v~-~--~~~~~~i~~~i~~~g~~~~~~   67 (113)
                      |.+..+.+ ||+|.+|+..+++.+.+++|+..+.+++..+.+.+. .  ....+.+.+.+.+.||.....
T Consensus         2 m~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~~   71 (80)
T 1jww_A            2 TEKAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDKLGYKLKLK   71 (80)
T ss_dssp             CEEEEEEEESCCCHHHHHHHHHHHHTSTTEEECCCCSSSSEEEEEECTTTCCHHHHHHHHHHHTSEEEEC
T ss_pred             ceEEEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCeEEec
Confidence            35678999 999999999999999999999999999999999886 2  356788899999999987654

>2ldi_A Zinc-transporting ATPase; metal homeostasis, metallochaperones, hydrolase; NMR {Synechocystis SP}

Probab=99.27  E-value=5.3e-11  Score=57.98  Aligned_cols=62  Identities=23%  Similarity=0.508  Sum_probs=54.7

Q ss_pred             eEEEEEe-CCcChhhHHHHHHHHhCCCCeeEEEEEecCCEEEEE-e--cCCHHHHHHHHHhcCCce
Q 033693            3 QTVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVK-G--NVQPDAVLQTVSKTGKKT   64 (113)
Q Consensus         3 ~~~~~~i-g~~c~~c~~~i~~~~~~~~gv~~~~~~~~~~~~~v~-~--~~~~~~i~~~i~~~g~~~   64 (113)
                      .+..+.+ ||+|.+|+..+++.+.+++|+..+.+++..+.+.+. .  ....+.+.+.+.+.||..
T Consensus         3 ~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~   68 (71)
T 2ldi_A            3 KTQQMQVGGMRCAACASSIERALERLKGVAEASVTVATGRLTVTYDPKQVSEITIQERIAALGYTL   68 (71)
T ss_dssp             EEEEEEEETCTTSGGGHHHHTGGGGCSSEEEEEEETTTTEEEEEECTTTCCTHHHHHHHHTTTCEE
T ss_pred             EEEEEEECCccCHHHHHHHHHHHhcCCCeeEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCCc
Confidence            4567999 999999999999999999999999999999999887 2  356778888999999965

>1fvq_A Copper-transporting ATPase; APO-CCC2A, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1fvs_A 2ggp_B

Probab=99.27  E-value=7.3e-11  Score=57.82  Aligned_cols=64  Identities=27%  Similarity=0.545  Sum_probs=56.2

Q ss_pred             EEEEEe-CCcChhhHHHHHHHHhCCCCeeEEEEEecCCEEEEE--ecCCHHHHHHHHHhcCCceEEe
Q 033693            4 TVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVK--GNVQPDAVLQTVSKTGKKTAFW   67 (113)
Q Consensus         4 ~~~~~i-g~~c~~c~~~i~~~~~~~~gv~~~~~~~~~~~~~v~--~~~~~~~i~~~i~~~g~~~~~~   67 (113)
                      +..+.+ ||+|.+|+..+++.+.+++|+..+.+++..+.+.+.  .....+.+.+.+.+.||.....
T Consensus         3 ~~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~G~~~~~~   69 (72)
T 1fvq_A            3 EVILAVHGMTCSACTNTINTQLRALKGVTKCDISLVTNECQVTYDNEVTADSIKEIIEDCGFDCEIL   69 (72)
T ss_dssp             EEEEEECSCCSHHHHHHHHHHHHTSSSEEEECCBTTTTEEEEEECTTSCHHHHHHHHHHHTCCEEEE
T ss_pred             EEEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCHHHHHHHHHHCCCceEEc
Confidence            467899 999999999999999999999999999999999887  2456788999999999986543

>2kkh_A Putative heavy metal transporter; zinc transport, metal binding, metal selectivity, ferredoxin fold, ATP-binding, hydrolase; NMR {Arabidopsis thaliana}

Probab=99.25  E-value=1.8e-10  Score=59.73  Aligned_cols=67  Identities=18%  Similarity=0.371  Sum_probs=58.0

Q ss_pred             eEEEEEe-CCcChhhHHHHHHHHhCCCCeeEEEEEecCCEEEEE-e--cCCHHHHHHHHHhcCCceEEecC
Q 033693            3 QTVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVK-G--NVQPDAVLQTVSKTGKKTAFWER   69 (113)
Q Consensus         3 ~~~~~~i-g~~c~~c~~~i~~~~~~~~gv~~~~~~~~~~~~~v~-~--~~~~~~i~~~i~~~g~~~~~~~~   69 (113)
                      .+..|.+ ||+|++|+..+++.+.+++|+..+.+++..+.+.+. .  ....+.+...+...||.......
T Consensus        16 ~~~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~   86 (95)
T 2kkh_A           16 QKSYFDVLGICCTSEVPIIENILKSLDGVKEYSVIVPSRTVIVVHDSLLISPFQIAKALNEARLEANVRVN   86 (95)
T ss_dssp             EEEEEEETTCCTTTTHHHHHHHHHHSSSEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTCCEEESCC
T ss_pred             EEEEEEECCcCCHHHHHHHHHHHhcCCCeeEEEEEccCCEEEEEECCCCCCHHHHHHHHHHcCCceEEecC
Confidence            4578999 999999999999999999999999999999999887 2  24678899999999998765433

>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A

Probab=99.22  E-value=1.2e-10  Score=65.08  Aligned_cols=66  Identities=23%  Similarity=0.471  Sum_probs=58.6

Q ss_pred             eEEEEEe-CCcChhhHHHHHHHHhCCCCeeEEEEEecCCEEEEE---ecCCHHHHHHHHHhcCCceEEec
Q 033693            3 QTVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVK---GNVQPDAVLQTVSKTGKKTAFWE   68 (113)
Q Consensus         3 ~~~~~~i-g~~c~~c~~~i~~~~~~~~gv~~~~~~~~~~~~~v~---~~~~~~~i~~~i~~~g~~~~~~~   68 (113)
                      ++..|.+ ||+|++|++.+++.+++++||..+.+++.++++.+.   ....++++.+.+.+.||......
T Consensus        74 ~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~  143 (151)
T 1p6t_A           74 EKAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDKLGYKLKLKG  143 (151)
T ss_dssp             EEEEEEESSCCSSSHHHHHHHHHTTSSSEEECCEETTTTEEEEEECTTTCCHHHHHHHHHHHTCCEEESC
T ss_pred             cccEEEecCCCCHHHHHHHHHHHhcCCCceEEEEEccCCEEEEEECCCCCCHHHHHHHHHHcCCCeEEcC
Confidence            3567999 999999999999999999999999999999999987   24678999999999999876543

>2kyz_A Heavy metal binding protein; structural genomics, PSI-biology, protein structure initiative, joint for structural genomics, JCSG; NMR {Thermotoga maritima}

Probab=99.22  E-value=4.3e-11  Score=58.09  Aligned_cols=59  Identities=27%  Similarity=0.540  Sum_probs=52.0

Q ss_pred             EEEEe-CCcChhhHHHHHHHHhCCCCeeEEEEEecCCEEEEEecCCHHHHHHHHHhcCCceE
Q 033693            5 VVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKTGKKTA   65 (113)
Q Consensus         5 ~~~~i-g~~c~~c~~~i~~~~~~~~gv~~~~~~~~~~~~~v~~~~~~~~i~~~i~~~g~~~~   65 (113)
                      ..+.+ ||+|.+|+..+++.++++ |+..+.+++..+.+.+..... +.+...+.+.||...
T Consensus         3 ~~~~v~gm~C~~C~~~i~~~l~~~-gv~~~~v~~~~~~~~v~~~~~-~~i~~~i~~~Gy~~~   62 (67)
T 2kyz_A            3 YVLYVPDISCNHCKMRISKALEEL-GVKNYEVSVEEKKVVVETENL-DSVLKKLEEIDYPVE   62 (67)
T ss_dssp             EEEECGGGGSHHHHHHHHHHHHHH-TCSEEEEETTTTEEEEECSCH-HHHHHHHHTTTCCCC
T ss_pred             EEEEECCcCcHHHHHHHHHHHHHc-CCeEEEEECCCCEEEEEECCH-HHHHHHHHHcCCcee
Confidence            57999 999999999999999999 999999999999999883333 788889999999753

>2aj0_A Probable cadmium-transporting ATPase; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta, metal binding protein, hydrolase; NMR {Listeria monocytogenes} PDB: 2aj1_A

Probab=99.21  E-value=6.2e-11  Score=58.15  Aligned_cols=60  Identities=28%  Similarity=0.594  Sum_probs=51.0

Q ss_pred             CceEEEEEe-CCcChhhHHHHHHHHhCCCCeeEEEEEecCCEEEEEecCCHHHHHHHHHhcCCce
Q 033693            1 MSQTVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKTGKKT   64 (113)
Q Consensus         1 ~~~~~~~~i-g~~c~~c~~~i~~~~~~~~gv~~~~~~~~~~~~~v~~~~~~~~i~~~i~~~g~~~   64 (113)
                      |+++..+.+ ||+|.+|+..+++.+.+++|+..+.+++..+.+.+.....    .+.+.+.||..
T Consensus         1 m~~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~----~~~i~~~Gy~~   61 (71)
T 2aj0_A            1 MAEKTVYRVDGLSCTNCAAKFERNVKEIEGVTEAIVNFGASKITVTGEAS----IQQVEQAGAFE   61 (71)
T ss_dssp             CCCEEEEEEESCCCHHHHHHHHHHHHHSTTEEEEEECCSSEEEEEEESCC----HHHHHHHHTTT
T ss_pred             CCeEEEEEECCcccHHHHHHHHHHHHcCCCeEEEEEECCCCEEEEEecCc----HHHHHHhCCCc
Confidence            677888999 9999999999999999999999999999999998874333    34567778753

>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}

Probab=99.19  E-value=1e-10  Score=79.86  Aligned_cols=63  Identities=19%  Similarity=0.496  Sum_probs=57.1

Q ss_pred             EEEEEe-CCcChhhHHHHHHHHhCCCCeeEEEEEecCCEEEEE---ecCCHHHHHHHHHhcCCceEE
Q 033693            4 TVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVK---GNVQPDAVLQTVSKTGKKTAF   66 (113)
Q Consensus         4 ~~~~~i-g~~c~~c~~~i~~~~~~~~gv~~~~~~~~~~~~~v~---~~~~~~~i~~~i~~~g~~~~~   66 (113)
                      +.++++ ||+|++|++.+++.+++++||.++++|+.++++.+.   ...+.+++.+.+++.||....
T Consensus         3 ~~~l~V~GM~Ca~Ca~~Ie~~L~~~~GV~~v~Vnl~~~~~~V~~d~~~~~~~~i~~ai~~~Gy~~~~   69 (723)
T 3j09_A            3 ERTVRVTGMTCAMCVKSIETAVGSLEGVEEVRVNLATETAFIRFDEKRIDFETIKRVIEDLGYGVVD   69 (723)
T ss_dssp             CEEEEEETCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHHCCEESS
T ss_pred             eEEEEeCCCCchHHHHHHHHHHhcCCCceEEEEEcCCCEEEEEeCCCcCCHHHHHHHHHhcCCcccc
Confidence            457999 999999999999999999999999999999999997   246899999999999998654

>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}

Probab=99.19  E-value=1.5e-10  Score=64.45  Aligned_cols=62  Identities=23%  Similarity=0.537  Sum_probs=55.9

Q ss_pred             EEEEEe-CCcChhhHHHHHHHHhCCCCeeEEEEEecCCEEEEE-e--cCCHHHHHHHHHhcCCceE
Q 033693            4 TVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVK-G--NVQPDAVLQTVSKTGKKTA   65 (113)
Q Consensus         4 ~~~~~i-g~~c~~c~~~i~~~~~~~~gv~~~~~~~~~~~~~v~-~--~~~~~~i~~~i~~~g~~~~   65 (113)
                      +..|.+ ||+|++|++.+++.+++++||..+.+++.++++.+. .  ....+++.+.+.+.||...
T Consensus        81 ~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~  146 (149)
T 2ew9_A           81 NIELTITGMTCASCVHNIESKLTRTNGITYASVALATSKALVKFDPEIIGPRDIIKIIEEIGFHAS  146 (149)
T ss_dssp             EEEEEEESCCSHHHHHHHHHHHHHSSSCCEEEEETTTTEEEEECCTTTSCHHHHHHHHHHHTCEEE
T ss_pred             eeEEEEEeccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEECCCCCCHHHHHHHHHhCCCceE
Confidence            467999 999999999999999999999999999999999987 2  3578899999999999754

>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens}

Probab=99.15  E-value=5.2e-10  Score=65.53  Aligned_cols=66  Identities=21%  Similarity=0.557  Sum_probs=57.3

Q ss_pred             EEEEEe-CCcChhhHHHHHHHHhCCCCeeEEEEEecCCEEEEE---ecCCHHHHHHHHHhcCCceEEecC
Q 033693            4 TVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVK---GNVQPDAVLQTVSKTGKKTAFWER   69 (113)
Q Consensus         4 ~~~~~i-g~~c~~c~~~i~~~~~~~~gv~~~~~~~~~~~~~v~---~~~~~~~i~~~i~~~g~~~~~~~~   69 (113)
                      +..|.| ||+|++|++.+++.+++++||..+.+++..+++.+.   .....+++.+.+.+.||.......
T Consensus       123 ~~~l~v~Gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~  192 (202)
T 2rop_A          123 TTLIAIAGMTCASCVHSIEGMISQLEGVQQISVSLAEGTATVLYNPAVISPEELRAAIEDMGFEASVVSE  192 (202)
T ss_dssp             EEEEEESCCCSTHHHHHHHHHGGGSSSEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTSCEEEC--
T ss_pred             EEEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEccCCEEEEEECCCCCCHHHHHHHHHHcCCceEEcCC
Confidence            467999 999999999999999999999999999999999887   235788899999999998765443

>1qup_A Superoxide dismutase 1 copper chaperone; two domains, beta-alpha-beta-BETA-alpha-beta and beta barrel; 1.80A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1

Probab=99.07  E-value=3.7e-09  Score=62.84  Aligned_cols=67  Identities=25%  Similarity=0.602  Sum_probs=58.9

Q ss_pred             EEEEEeCCcChhhHHHHHHHHhCCCCeeEEEEEecCCEEEEEecCCHHHHHHHHHhcCCceEEecCC
Q 033693            4 TVVLKVGMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKTGKKTAFWERG   70 (113)
Q Consensus         4 ~~~~~ig~~c~~c~~~i~~~~~~~~gv~~~~~~~~~~~~~v~~~~~~~~i~~~i~~~g~~~~~~~~~   70 (113)
                      +.+|++.|+|.+|++++++++++++||..+++++.++++.+.....++++.+.+++.||........
T Consensus         7 ~~~l~V~MtC~~Ca~~IekaL~~l~GV~~v~Vnl~~~~v~V~~~~~~~~I~~aI~~~Gy~a~~~~~~   73 (222)
T 1qup_A            7 EATYAIPMHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESSVAPSTIINTLRNCGKDAIIRGAG   73 (222)
T ss_dssp             EEEEECCCCSTTHHHHHHHHHTTCTTEEEEEEETTTTEEEEEESSCHHHHHHHHHHTTCCCEEECCS
T ss_pred             EEEEEEccccHHHHHHHHHHHhcCCCeeEEEEEcCCCEEEEeccCCHHHHHHHHHHcCCccccccCC
Confidence            4566778999999999999999999999999999999999986678899999999999987665443

>1jk9_B CCS, copper chaperone for superoxide dismutase; protein-protein complex, heterodimer, metallochaperone, amyotrophic lateral sclerosis; 2.90A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1

Probab=98.99  E-value=6e-09  Score=62.90  Aligned_cols=67  Identities=25%  Similarity=0.602  Sum_probs=58.8

Q ss_pred             EEEEEeCCcChhhHHHHHHHHhCCCCeeEEEEEecCCEEEEEecCCHHHHHHHHHhcCCceEEecCC
Q 033693            4 TVVLKVGMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKTGKKTAFWERG   70 (113)
Q Consensus         4 ~~~~~ig~~c~~c~~~i~~~~~~~~gv~~~~~~~~~~~~~v~~~~~~~~i~~~i~~~g~~~~~~~~~   70 (113)
                      +..|.+.|+|++|++++++++++++||..+.+++.++++.+.....++++.+.+++.||.+......
T Consensus         8 ~~~l~V~MtC~~Ca~~IekaL~~l~GV~~v~Vnl~~~~v~V~~~~~~~~I~~aIe~~Gy~a~~~~~~   74 (249)
T 1jk9_B            8 EATYAIPMHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESSVAPSTIINTLRNCGKDAIIRGAG   74 (249)
T ss_dssp             EEEEECCCCSSSHHHHHHHHHTTCTTEEEEEEETTTTEEEEEESSCHHHHHHHHHTTTCCCEEEEES
T ss_pred             eEEEEEeeccHHHHHHHHHHHhccCCeeEEEEEcCCCeEEEecCCCHHHHHHHHHHhCCCcccccCC
Confidence            3556668999999999999999999999999999999999986678899999999999987665433

>4gwb_A Peptide methionine sulfoxide reductase MSRA 3; structural genomics, protein structure initiative, nysgrc, R PSI-biology; 1.20A {Sinorhizobium meliloti}

Probab=90.45  E-value=0.69  Score=26.31  Aligned_cols=35  Identities=23%  Similarity=0.439  Sum_probs=28.4

Q ss_pred             CceEEEEEeCCcChhhHHHHHHHHhCCCCeeEEEEEecCC
Q 033693            1 MSQTVVLKVGMSCEGCVGAVKRVLGKMDGVETFDIDLKEQ   40 (113)
Q Consensus         1 ~~~~~~~~ig~~c~~c~~~i~~~~~~~~gv~~~~~~~~~~   40 (113)
                      |+++..|.     .+|=|-+|..+.+++||.++.+.++++
T Consensus         1 Mte~A~fa-----gGCFWg~E~~f~~l~GV~~t~~GYagG   35 (168)
T 4gwb_A            1 MTKRAVLA-----GGCFWGMQDLIRKLPGVIETRVGYTGG   35 (168)
T ss_dssp             -CEEEEEE-----ESCHHHHHHHHTTSTTEEEEEEEEESS
T ss_pred             CceEEEEE-----ccCccchHHHHhcCCCeEEEEEEcCCC
Confidence            67766655     358899999999999999999998765

>1je3_A EC005, hypothetical 8.6 kDa protein in AMYA-FLIE intergenic region; mixed alpha-beta structure, structural genomics; NMR {Escherichia coli} SCOP: d.68.3.3

Probab=88.28  E-value=1.6  Score=22.35  Aligned_cols=57  Identities=11%  Similarity=0.055  Sum_probs=40.1

Q ss_pred             CceEEEEEe-CCcChhhHHHHHHHHhCCCCeeEEEEEecCCEEEEE--ecCCHHHHHHHHHhcCCceEE
Q 033693            1 MSQTVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVK--GNVQPDAVLQTVSKTGKKTAF   66 (113)
Q Consensus         1 ~~~~~~~~i-g~~c~~c~~~i~~~~~~~~gv~~~~~~~~~~~~~v~--~~~~~~~i~~~i~~~g~~~~~   66 (113)
                      |+....+.. |+.|+-...+..+++++++.-         +.+.+.  .......+...++..|+....
T Consensus        24 m~~~~~LD~rGl~CP~PvlktkkaL~~l~~G---------e~L~Vl~dd~~a~~dIp~~~~~~G~~v~~   83 (97)
T 1je3_A           24 IVPDYRLDMVGEPCPYPAVATLEAMPQLKKG---------EILEVVSDCPQSINNIPLDARNHGYTVLD   83 (97)
T ss_dssp             CCEEEEECSBCCSSSSSTHHHHHHTTTCCSS---------CEEEEEEBCSSSSCHHHHHHHHHTCSEEE
T ss_pred             CCcCeEEeCCCCCCCHHHHHHHHHHHcCCCC---------CEEEEEECCcchHHHHHHHHHHCCCEEEE
Confidence            333456788 999999999999999987322         233332  334456788888899998754

>1jdq_A TM006 protein, hypothetical protein TM0983; structural genomics; NMR {Thermotoga maritima} SCOP: d.68.3.3

Probab=86.86  E-value=2  Score=21.99  Aligned_cols=55  Identities=25%  Similarity=0.229  Sum_probs=40.5

Q ss_pred             EEEEe-CCcChhhHHHHHHHHhCCCCeeEEEEEecCCEEEEE--ecCCHHHHHHHHHhcCCceEEec
Q 033693            5 VVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVK--GNVQPDAVLQTVSKTGKKTAFWE   68 (113)
Q Consensus         5 ~~~~i-g~~c~~c~~~i~~~~~~~~gv~~~~~~~~~~~~~v~--~~~~~~~i~~~i~~~g~~~~~~~   68 (113)
                      .++.. |+.|+....++.+++++++.         .+.+.|.  .......+...++..|+......
T Consensus        27 ~~LD~rGl~CP~Pvl~tkkaL~~l~~---------Ge~L~Vl~dd~~a~~dI~~~~~~~G~~v~~~e   84 (98)
T 1jdq_A           27 KTLDVRGEVCPVPDVETKRALQNMKP---------GEILEVWIDYPMSKERIPETVKKLGHEVLEIE   84 (98)
T ss_dssp             EEEECSSCCSSHHHHHHHHHHHTCCT---------TCEEEEEESSCTHHHHHHHHHHHSSCCEEEEE
T ss_pred             EEEeCCCCCCCHHHHHHHHHHHhCCC---------CCEEEEEECCccHHHHHHHHHHHCCCEEEEEE
Confidence            56888 99999999999999998632         2233333  33456778888999999876543

>3lvj_C Sulfurtransferase TUSA; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 2.44A {Escherichia coli} SCOP: d.68.3.3 PDB: 3lvk_B* 1dcj_A

Probab=86.02  E-value=2  Score=21.10  Aligned_cols=55  Identities=11%  Similarity=0.139  Sum_probs=40.2

Q ss_pred             EEEEEe-CCcChhhHHHHHHHHhCCCCeeEEEEEecCCEEEEE--ecCCHHHHHHHHHhcCCceEEe
Q 033693            4 TVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVK--GNVQPDAVLQTVSKTGKKTAFW   67 (113)
Q Consensus         4 ~~~~~i-g~~c~~c~~~i~~~~~~~~gv~~~~~~~~~~~~~v~--~~~~~~~i~~~i~~~g~~~~~~   67 (113)
                      ..++.. |+.|+....+..+++++++.         .+.+.+.  .......+....+..|+.....
T Consensus        10 ~~~lD~rGl~CP~Pvl~~kkal~~l~~---------G~~l~V~~dd~~a~~di~~~~~~~G~~~~~~   67 (82)
T 3lvj_C           10 DHTLDALGLRCPEPVMMVRKTVRNMQP---------GETLLIIADDPATTRDIPGFCTFMEHELVAK   67 (82)
T ss_dssp             SEEEECTTCCTTHHHHHHHHHHHTSCT---------TCEEEEEECCTTHHHHHHHHHHHTTCEEEEE
T ss_pred             CEEEECCCCCCCHHHHHHHHHHHhCCC---------CCEEEEEECCccHHHHHHHHHHHCCCEEEEE
Confidence            357888 99999999999999998732         2233333  3445677888889999987654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	113
d1cc8a_	72	d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX	2e-18
d1qupa2	72	d.58.17.1 (A:2-73) Copper chaperone for superoxide	9e-18
d1fe0a_	66	d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX	4e-16
d1osda_	72	d.58.17.1 (A:) Mercuric ion binding protein MerP {	2e-15
d2ggpb1	72	d.58.17.1 (B:1-72) Copper transporter domain ccc2a	8e-15
d2aw0a_	72	d.58.17.1 (A:) Menkes copper-transporting ATPase {	2e-14
d1kvja_	79	d.58.17.1 (A:) Menkes copper-transporting ATPase {	3e-13
d1sb6a_	64	d.58.17.1 (A:) Copper chaperone {Synechocystis sp.	4e-13
d1mwza_	73	d.58.17.1 (A:) Metal ion-transporting ATPase ZntA,	6e-13
d1p6ta1	72	d.58.17.1 (A:1-72) Potential copper-translocating	1e-12
d2qifa1	69	d.58.17.1 (A:1-69) Copper chaperone {Bacillus subt	4e-12
d1p6ta2	79	d.58.17.1 (A:73-151) Potential copper-translocatin	5e-12
d1cpza_	68	d.58.17.1 (A:) Copper chaperone {Enterococcus hira	2e-11
d1q8la_	84	d.58.17.1 (A:) Menkes copper-transporting ATPase {	3e-10

>d1cc8a_ d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 72

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: ATX1 metallochaperone protein (ATOX1)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 71.0 bits (174), Expect = 2e-18
 Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 1/62 (1%)

Query: 3  QTVVLKVGMSCEGCVGAVKRVLGKMD-GVETFDIDLKEQKVTVKGNVQPDAVLQTVSKTG 61
          +     V M+C GC GAV +VL K++  V   DI L++Q V V   +  D +L+ + KTG
Sbjct: 4  KHYQFNVVMTCSGCSGAVNKVLTKLEPDVSKIDISLEKQLVDVYTTLPYDFILEKIKKTG 63

Query: 62 KK 63
          K+
Sbjct: 64 KE 65

>d1qupa2 d.58.17.1 (A:2-73) Copper chaperone for superoxide dismutase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 72

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper chaperone for superoxide dismutase, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.0 bits (169), Expect = 9e-18
 Identities = 16/62 (25%), Positives = 33/62 (53%)

Query: 2  SQTVVLKVGMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKTG 61
          +      + M CE CV  +K  L  + G+ + + D+++Q ++V+ +V P  ++ T+   G
Sbjct: 5  TYEATYAIPMHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESSVAPSTIINTLRNCG 64

Query: 62 KK 63
          K 
Sbjct: 65 KD 66

>d1fe0a_ d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX1) {Human (Homo sapiens), HAH1 [TaxId: 9606]} Length = 66

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: ATX1 metallochaperone protein (ATOX1)
species: Human (Homo sapiens), HAH1 [TaxId: 9606]

 Score = 64.9 bits (158), Expect = 4e-16
 Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 7  LKVGMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKTGKKTAF 66
            V M+C GC  AV RVL K+ GV+   IDL  +KV ++     D +L T+ KTGK  ++
Sbjct: 5  FSVDMTCGGCAEAVSRVLNKLGGVKYD-IDLPNKKVCIESEHSMDTLLATLKKTGKTVSY 63

Query: 67 W 67
           
Sbjct: 64 L 64

>d1osda_ d.58.17.1 (A:) Mercuric ion binding protein MerP {Ralstonia metallidurans CH34 [TaxId: 266264]} Length = 72

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Mercuric ion binding protein MerP
species: Ralstonia metallidurans CH34 [TaxId: 266264]

 Score = 63.2 bits (154), Expect = 2e-15
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 4/64 (6%)

Query: 2  SQTVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVK---GNVQPDAVLQTV 57
          +QTV L V GM+C  C   VK+ + K++GV   D+  + ++  V           + +  
Sbjct: 2  TQTVTLSVPGMTCSACPITVKKAISKVEGVSKVDVTFETRQAVVTFDDAKTSVQKLTKAT 61

Query: 58 SKTG 61
          +  G
Sbjct: 62 ADAG 65

>d2ggpb1 d.58.17.1 (B:1-72) Copper transporter domain ccc2a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 72

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper transporter domain ccc2a
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.7 bits (150), Expect = 8e-15
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 3/63 (4%)

Query: 2  SQTVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVK--GNVQPDAVLQTVS 58
          ++ V+L V GM+C  C   +   L  + GV   DI L   +  V     V  D++ + + 
Sbjct: 1  AREVILAVHGMTCSACTNTINTQLRALKGVTKCDISLVTNECQVTYDNEVTADSIKEIIE 60

Query: 59 KTG 61
            G
Sbjct: 61 DCG 63

>d2aw0a_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]} Length = 72

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Menkes copper-transporting ATPase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.0 bits (148), Expect = 2e-14
 Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 4/65 (6%)

Query: 1  MSQTVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVK---GNVQPDAVLQT 56
          ++Q  V+ + GM+C  CV +++ V+ K  GV++  + L     TV+       P+ +   
Sbjct: 1  LTQETVINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLANSNGTVEYDPLLTSPETLRGA 60

Query: 57 VSKTG 61
          +   G
Sbjct: 61 IEDMG 65

>d1kvja_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Menkes copper-transporting ATPase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (140), Expect = 3e-13
 Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 4/63 (6%)

Query: 3  QTVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGN---VQPDAVLQTVS 58
           +V + V GM+C  CV  +++ +GK++GV    + L+E+  T+  +     P  + + + 
Sbjct: 8  NSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAID 67

Query: 59 KTG 61
            G
Sbjct: 68 DMG 70

>d1sb6a_ d.58.17.1 (A:) Copper chaperone {Synechocystis sp. pcc 6803, Scatx1 [TaxId: 1148]} Length = 64

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper chaperone
species: Synechocystis sp. pcc 6803, Scatx1 [TaxId: 1148]

 Score = 57.3 bits (138), Expect = 4e-13
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 4  TVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKTGK 62
          T+ L V  ++CE C  AV + +   D   T  +DL  +KVT+   +  + +   ++  G 
Sbjct: 2  TIQLTVPTIACEACAEAVTKAVQNEDAQATVQVDLTSKKVTITSALGEEQLRTAIASAGH 61

Query: 63 K 63
          +
Sbjct: 62 E 62

>d1mwza_ d.58.17.1 (A:) Metal ion-transporting ATPase ZntA, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 73

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Metal ion-transporting ATPase ZntA, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 56.7 bits (137), Expect = 6e-13
 Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 2/62 (3%)

Query: 2  SQTVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQ-PDAVLQTVSK 59
                KV GM C  C   V+  + ++ GV    +    +K+ V  +      V   + K
Sbjct: 2  GTRYSWKVSGMDCAACARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESALQK 61

Query: 60 TG 61
           G
Sbjct: 62 AG 63

>d1p6ta1 d.58.17.1 (A:1-72) Potential copper-translocating P-type ATPase CopA (YvgX) {Bacillus subtilis [TaxId: 1423]} Length = 72

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Potential copper-translocating P-type ATPase CopA (YvgX)
species: Bacillus subtilis [TaxId: 1423]

 Score = 56.3 bits (136), Expect = 1e-12
 Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 4/63 (6%)

Query: 3  QTVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVK---GNVQPDAVLQTVS 58
          + + ++V GM+C  C   +++ L +M GV   +++L  + V V          A+ + + 
Sbjct: 6  KEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIE 65

Query: 59 KTG 61
          K G
Sbjct: 66 KLG 68

>d2qifa1 d.58.17.1 (A:1-69) Copper chaperone {Bacillus subtilis, CopZ [TaxId: 1423]} Length = 69

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper chaperone
species: Bacillus subtilis, CopZ [TaxId: 1423]

 Score = 54.8 bits (132), Expect = 4e-12
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 4/63 (6%)

Query: 3  QTVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGN---VQPDAVLQTVS 58
          +   L+V GMSC+ CV AV+  +G++DGV    ++L+  KV V  +   V    +   + 
Sbjct: 2  EQKTLQVEGMSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDVSFDADKVSVKDIADAIE 61

Query: 59 KTG 61
            G
Sbjct: 62 DQG 64

>d1p6ta2 d.58.17.1 (A:73-151) Potential copper-translocating P-type ATPase CopA (YvgX) {Bacillus subtilis [TaxId: 1423]} Length = 79

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Potential copper-translocating P-type ATPase CopA (YvgX)
species: Bacillus subtilis [TaxId: 1423]

 Score = 54.9 bits (132), Expect = 5e-12
 Identities = 14/64 (21%), Positives = 29/64 (45%), Gaps = 4/64 (6%)

Query: 2  SQTVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVK---GNVQPDAVLQTV 57
          ++     + GM+C  C   +++ L K++GV    ++   + VTV+          + + V
Sbjct: 1  TEKAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAV 60

Query: 58 SKTG 61
           K G
Sbjct: 61 DKLG 64

>d1cpza_ d.58.17.1 (A:) Copper chaperone {Enterococcus hirae [TaxId: 1354]} Length = 68

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper chaperone
species: Enterococcus hirae [TaxId: 1354]

 Score = 52.9 bits (127), Expect = 2e-11
 Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 4/59 (6%)

Query: 7  LKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVK---GNVQPDAVLQTVSKTG 61
            V GMSC  CV  ++  +G++ GV+   + LK++K  VK    NVQ   + Q +++ G
Sbjct: 4  FSVKGMSCNHCVARIEEAVGRISGVKKVKVQLKKEKAVVKFDEANVQATEICQAINELG 62

>d1q8la_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Menkes copper-transporting ATPase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (120), Expect = 3e-10
 Identities = 13/64 (20%), Positives = 28/64 (43%), Gaps = 4/64 (6%)

Query: 2  SQTVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKV---TVKGNVQPDAVLQTV 57
             + +KV GM+C  C   ++  +GK+ GV+   + L  Q+         +  + + + +
Sbjct: 8  EVVLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIVYQPHLISVEEMKKQI 67

Query: 58 SKTG 61
             G
Sbjct: 68 EAMG 71

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	113
d2aw0a_	72	Menkes copper-transporting ATPase {Human (Homo sap	99.75
d2ggpb1	72	Copper transporter domain ccc2a {Baker's yeast (Sa	99.69
d2qifa1	69	Copper chaperone {Bacillus subtilis, CopZ [TaxId:	99.69
d1osda_	72	Mercuric ion binding protein MerP {Ralstonia metal	99.67
d1kvja_	79	Menkes copper-transporting ATPase {Human (Homo sap	99.66
d1cpza_	68	Copper chaperone {Enterococcus hirae [TaxId: 1354]	99.65
d1p6ta2	79	Potential copper-translocating P-type ATPase CopA	99.65
d1mwza_	73	Metal ion-transporting ATPase ZntA, N-terminal dom	99.65
d1qupa2	72	Copper chaperone for superoxide dismutase, N-termi	99.64
d1cc8a_	72	ATX1 metallochaperone protein (ATOX1) {Baker's yea	99.64
d1fe0a_	66	ATX1 metallochaperone protein (ATOX1) {Human (Homo	99.64
d1sb6a_	64	Copper chaperone {Synechocystis sp. pcc 6803, Scat	99.63
d1p6ta1	72	Potential copper-translocating P-type ATPase CopA	99.62
d1q8la_	84	Menkes copper-transporting ATPase {Human (Homo sap	99.61
d1dcja_	81	SirA {Escherichia coli [TaxId: 562]}	85.23
d1je3a_	97	hypothetical protein YedF (EC005) {Escherichia col	82.47

>d2aw0a_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Menkes copper-transporting ATPase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.2e-17  Score=81.89  Aligned_cols=66  Identities=24%  Similarity=0.544  Sum_probs=61.6

Q ss_pred             CceEEEEEe-CCcChhhHHHHHHHHhCCCCeeEEEEEecCCEEEEE---ecCCHHHHHHHHHhcCCceEE
Q 033693            1 MSQTVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVK---GNVQPDAVLQTVSKTGKKTAF   66 (113)
Q Consensus         1 ~~~~~~~~i-g~~c~~c~~~i~~~~~~~~gv~~~~~~~~~~~~~v~---~~~~~~~i~~~i~~~g~~~~~   66 (113)
                      |+++..++| ||+|++|++.+++.+.+++||.++++|+.++++.+.   ...+++++.+.+.+.||++..
T Consensus         1 mt~~~~l~V~GM~C~~C~~~Ie~~l~~~~GV~~v~v~~~~~~v~v~~d~~~~~~~~i~~~i~~~Gy~a~l   70 (72)
T d2aw0a_           1 LTQETVINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLANSNGTVEYDPLLTSPETLRGAIEDMGFDATL   70 (72)
T ss_dssp             CCEEEEEEEECCCSHHHHHHHHHHHHTSTTCCCEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTSEEEE
T ss_pred             CcEEEEEEECCcccHHHHHHHHHHHhcCCCcEEEEEECCCCEEEEEECCCCCCHHHHHHHHHhhCCCcEe
Confidence            889999999 999999999999999999999999999999999997   347899999999999998754

>d2ggpb1 d.58.17.1 (B:1-72) Copper transporter domain ccc2a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper transporter domain ccc2a
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.69  E-value=1.6e-16  Score=77.74  Aligned_cols=65  Identities=26%  Similarity=0.544  Sum_probs=59.9

Q ss_pred             eEEEEEe-CCcChhhHHHHHHHHhCCCCeeEEEEEecCCEEEEE--ecCCHHHHHHHHHhcCCceEEe
Q 033693            3 QTVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVK--GNVQPDAVLQTVSKTGKKTAFW   67 (113)
Q Consensus         3 ~~~~~~i-g~~c~~c~~~i~~~~~~~~gv~~~~~~~~~~~~~v~--~~~~~~~i~~~i~~~g~~~~~~   67 (113)
                      +++.++| ||+|++|++++++.+++++||..+++|+.++++.+.  +..+++++.+.+.+.||.+...
T Consensus         2 k~v~l~V~GM~C~~C~~~Ie~~l~~~~gV~~v~V~~~~~~~~v~~~~~~~~~~i~~~i~~~Gy~a~~~   69 (72)
T d2ggpb1           2 REVILAVHGMTCSACTNTINTQLRALKGVTKCDISLVTNECQVTYDNEVTADSIKEIIEDCGFDCEIL   69 (72)
T ss_dssp             EEEEEECTTCCSSTTTHHHHHHHTTSTTEEEEEECTTTCEEEEEECSSCCHHHHHHHHHHTTCCCEEE
T ss_pred             eEEEEEECCcccHHHHHHHHHHHhcCCCceEEEEECCCCEEEEEECCCCCHHHHHHHHHHhCCCeEEc
Confidence            5688999 999999999999999999999999999999999987  5578999999999999987654

>d2qifa1 d.58.17.1 (A:1-69) Copper chaperone {Bacillus subtilis, CopZ [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper chaperone
species: Bacillus subtilis, CopZ [TaxId: 1423]

Probab=99.69  E-value=4e-16  Score=75.66  Aligned_cols=63  Identities=32%  Similarity=0.610  Sum_probs=58.0

Q ss_pred             ceEEEEEe-CCcChhhHHHHHHHHhCCCCeeEEEEEecCCEEEEE---ecCCHHHHHHHHHhcCCce
Q 033693            2 SQTVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVK---GNVQPDAVLQTVSKTGKKT   64 (113)
Q Consensus         2 ~~~~~~~i-g~~c~~c~~~i~~~~~~~~gv~~~~~~~~~~~~~v~---~~~~~~~i~~~i~~~g~~~   64 (113)
                      |++..|+| ||+|++|++.+++++++++||..+++|+.++++.+.   ...+.+++.+.+.+.||++
T Consensus         1 M~~~tl~V~Gm~C~~C~~~Ie~~l~~~~GV~~v~v~~~~~~v~v~~d~~~~~~~~i~~~i~~~Gy~~   67 (69)
T d2qifa1           1 MEQKTLQVEGMSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDVSFDADKVSVKDIADAIEDQGYDV   67 (69)
T ss_dssp             CEEEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHTTCEE
T ss_pred             CcEEEEEECCccCHHHHHHHHHHHhcCCCceEEEEECCCCEEEEEECCCCCCHHHHHHHHHHhCCcc
Confidence            36778999 999999999999999999999999999999999998   3478999999999999975

>d1osda_ d.58.17.1 (A:) Mercuric ion binding protein MerP {Ralstonia metallidurans CH34 [TaxId: 266264]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Mercuric ion binding protein MerP
species: Ralstonia metallidurans CH34 [TaxId: 266264]

Probab=99.67  E-value=7e-16  Score=75.39  Aligned_cols=65  Identities=26%  Similarity=0.552  Sum_probs=59.6

Q ss_pred             ceEEEEEe-CCcChhhHHHHHHHHhCCCCeeEEEEEecCCEEEEE---ecCCHHHHHHHHHhcCCceEE
Q 033693            2 SQTVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVK---GNVQPDAVLQTVSKTGKKTAF   66 (113)
Q Consensus         2 ~~~~~~~i-g~~c~~c~~~i~~~~~~~~gv~~~~~~~~~~~~~v~---~~~~~~~i~~~i~~~g~~~~~   66 (113)
                      ++...++| ||+|.+|++.+++.+++++|+.++++|+.++++.+.   ...+++++.+.+.+.||++..
T Consensus         2 tqt~~l~V~Gm~C~~C~~~Ie~~l~~~~gV~~v~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~a~v   70 (72)
T d1osda_           2 TQTVTLSVPGMTCSACPITVKKAISKVEGVSKVDVTFETRQAVVTFDDAKTSVQKLTKATADAGYPSSV   70 (72)
T ss_dssp             EEEEEEECTTCCSTTHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEETTTCCHHHHHHHHHHTTCCCEE
T ss_pred             CeEEEEEECCcccHHHHHHHHHHHHcCCCcEEEEEEcCCCEEEEEECCCCCCHHHHHHHHHhcCCCeEe
Confidence            46788999 999999999999999999999999999999999987   347899999999999998754

>d1kvja_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Menkes copper-transporting ATPase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.2e-15  Score=75.87  Aligned_cols=67  Identities=24%  Similarity=0.563  Sum_probs=60.9

Q ss_pred             eEEEEEe-CCcChhhHHHHHHHHhCCCCeeEEEEEecCCEEEEE---ecCCHHHHHHHHHhcCCceEEecC
Q 033693            3 QTVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVK---GNVQPDAVLQTVSKTGKKTAFWER   69 (113)
Q Consensus         3 ~~~~~~i-g~~c~~c~~~i~~~~~~~~gv~~~~~~~~~~~~~v~---~~~~~~~i~~~i~~~g~~~~~~~~   69 (113)
                      +++.+.| ||+|.+|++.+++.+++++|+.++++|+.++++.+.   ...+..++.+.++++||++....+
T Consensus         8 ~~~~l~V~gm~C~~C~~~ie~~l~~~~gv~~v~v~~~~~~v~v~~d~~~~~~~~i~~~i~~~GY~~~~~~~   78 (79)
T d1kvja_           8 NSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDMGFDAVIHNP   78 (79)
T ss_dssp             EEEEEEEESCCSTHHHHHHHHHHHTTTTCSEEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTCEEEECSC
T ss_pred             eEEEEEECCeecHHHHHHHHHHHhcCCCceEEEEECCCCEEEEEECCCCCCHHHHHHHHHhcCCCcEeCCC
Confidence            5688999 999999999999999999999999999999999998   347899999999999999876543

>d1cpza_ d.58.17.1 (A:) Copper chaperone {Enterococcus hirae [TaxId: 1354]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper chaperone
species: Enterococcus hirae [TaxId: 1354]

Probab=99.65  E-value=1.1e-15  Score=73.94  Aligned_cols=61  Identities=33%  Similarity=0.675  Sum_probs=56.4

Q ss_pred             EEEe-CCcChhhHHHHHHHHhCCCCeeEEEEEecCCEEEEE---ecCCHHHHHHHHHhcCCceEE
Q 033693            6 VLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVK---GNVQPDAVLQTVSKTGKKTAF   66 (113)
Q Consensus         6 ~~~i-g~~c~~c~~~i~~~~~~~~gv~~~~~~~~~~~~~v~---~~~~~~~i~~~i~~~g~~~~~   66 (113)
                      +|+| ||+|++|++++++.+++++||.++++|+.++++.+.   ...+++++.+.+.+.||++..
T Consensus         3 el~V~GM~C~~C~~~Ie~~l~~~~GV~~v~V~~~~~~v~v~~d~~~~~~~~i~~~i~~~Gy~a~v   67 (68)
T d1cpza_           3 EFSVKGMSCNHCVARIEEAVGRISGVKKVKVQLKKEKAVVKFDEANVQATEICQAINELGYQAEV   67 (68)
T ss_dssp             EEEESCCCSSSHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHTTSSCEEE
T ss_pred             EEEECCeEcHHHHHHHHHHHhcCCCcEEEEEECCCCEEEEEECCCCCCHHHHHHHHHhhCCCcEE
Confidence            6899 999999999999999999999999999999999997   347899999999999998753

>d1p6ta2 d.58.17.1 (A:73-151) Potential copper-translocating P-type ATPase CopA (YvgX) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Potential copper-translocating P-type ATPase CopA (YvgX)
species: Bacillus subtilis [TaxId: 1423]

Probab=99.65  E-value=9.2e-16  Score=76.24  Aligned_cols=67  Identities=22%  Similarity=0.472  Sum_probs=61.2

Q ss_pred             ceEEEEEe-CCcChhhHHHHHHHHhCCCCeeEEEEEecCCEEEEE---ecCCHHHHHHHHHhcCCceEEec
Q 033693            2 SQTVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVK---GNVQPDAVLQTVSKTGKKTAFWE   68 (113)
Q Consensus         2 ~~~~~~~i-g~~c~~c~~~i~~~~~~~~gv~~~~~~~~~~~~~v~---~~~~~~~i~~~i~~~g~~~~~~~   68 (113)
                      +++..|.| ||+|++|++++++.+.+++||..+.+|+.++++.+.   ...+.+++.+.+.+.||.+....
T Consensus         1 T~k~~~~V~Gm~C~~C~~~Ie~~l~~~~gV~~v~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~   71 (79)
T d1p6ta2           1 TEKAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDKLGYKLKLKG   71 (79)
T ss_dssp             CEEEEEEESSCCSSSHHHHHHHHHTTSSSEEECCEETTTTEEEEEECTTTCCHHHHHHHHHHHTCCEEESC
T ss_pred             CeEEEEEECCcccHHHHHHHHHHHhcCCCcEEEEEEeCCCEEEEEECCCCCCHHHHHHHHHHHCCceEECC
Confidence            46789999 999999999999999999999999999999999997   34789999999999999987643

>d1mwza_ d.58.17.1 (A:) Metal ion-transporting ATPase ZntA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Metal ion-transporting ATPase ZntA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.65  E-value=9.8e-16  Score=75.03  Aligned_cols=64  Identities=23%  Similarity=0.383  Sum_probs=58.2

Q ss_pred             eEEEEEe-CCcChhhHHHHHHHHhCCCCeeEEEEEecCCEEEEE-ecCCHHHHHHHHHhcCCceEE
Q 033693            3 QTVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVK-GNVQPDAVLQTVSKTGKKTAF   66 (113)
Q Consensus         3 ~~~~~~i-g~~c~~c~~~i~~~~~~~~gv~~~~~~~~~~~~~v~-~~~~~~~i~~~i~~~g~~~~~   66 (113)
                      +++.|.| ||+|++|+..+++.|.+++||..+.+|+.++++.+. .....+++.+.+.+.||.+..
T Consensus         3 ~k~~~~V~Gm~C~~C~~~Ie~~l~~~~gV~~v~v~~~~~~~~v~~~~~~~~~i~~~i~~~GY~v~~   68 (73)
T d1mwza_           3 TRYSWKVSGMDCAACARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESALQKAGYSLRD   68 (73)
T ss_dssp             CCEEEECTTCCSHHHHHHHHHHHHTSSSEEEEEEETTTTEEEEEESSCCHHHHHHHHHHHTCCCCB
T ss_pred             CEEEEEECCcCCHHHHHHHHHHHhcCCCceEEEEECCCCEEEEEECCCCHHHHHHHHHHcCCcccC
Confidence            4688999 999999999999999999999999999999999998 455678999999999998654

>d1qupa2 d.58.17.1 (A:2-73) Copper chaperone for superoxide dismutase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper chaperone for superoxide dismutase, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.64  E-value=2.6e-15  Score=73.22  Aligned_cols=63  Identities=25%  Similarity=0.621  Sum_probs=58.7

Q ss_pred             EEEEEeCCcChhhHHHHHHHHhCCCCeeEEEEEecCCEEEEEecCCHHHHHHHHHhcCCceEE
Q 033693            4 TVVLKVGMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKTGKKTAF   66 (113)
Q Consensus         4 ~~~~~ig~~c~~c~~~i~~~~~~~~gv~~~~~~~~~~~~~v~~~~~~~~i~~~i~~~g~~~~~   66 (113)
                      +..|+++|+|.+|+++++++|++++||.++.+|+.++++.+....+++++.+.+++.||++..
T Consensus         7 ~~~f~V~M~C~~C~~~Iek~l~~~~gV~~v~vdl~~~~v~V~~~~~~~~i~~~I~~~G~~A~l   69 (72)
T d1qupa2           7 EATYAIPMHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESSVAPSTIINTLRNCGKDAII   69 (72)
T ss_dssp             EEEEECCCCSTTHHHHHHHHHTTCTTEEEEEEETTTTEEEEEESSCHHHHHHHHHHTTCCCEE
T ss_pred             EEEEEEccCCHHHHHHHHHHHhcCCCeeEEEEECCCCEEEEEeeCCHHHHHHHHHHhCCCEEE
Confidence            467888999999999999999999999999999999999999778999999999999998754

>d1cc8a_ d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: ATX1 metallochaperone protein (ATOX1)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.64  E-value=3.8e-15  Score=72.56  Aligned_cols=64  Identities=38%  Similarity=0.599  Sum_probs=59.1

Q ss_pred             eEEEEEeCCcChhhHHHHHHHHhCC-CCeeEEEEEecCCEEEEEecCCHHHHHHHHHhcCCceEE
Q 033693            3 QTVVLKVGMSCEGCVGAVKRVLGKM-DGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKTGKKTAF   66 (113)
Q Consensus         3 ~~~~~~ig~~c~~c~~~i~~~~~~~-~gv~~~~~~~~~~~~~v~~~~~~~~i~~~i~~~g~~~~~   66 (113)
                      ++++|+++|+|.+|+++++++|+++ +|+.++++|+.++++.+....+++++.+.+++.||.+..
T Consensus         4 kt~~f~V~MtC~~C~~~Ie~~L~~l~~gV~~v~v~~~~~~v~V~~~~~~~~i~~~i~~~G~~~~~   68 (72)
T d1cc8a_           4 KHYQFNVVMTCSGCSGAVNKVLTKLEPDVSKIDISLEKQLVDVYTTLPYDFILEKIKKTGKEVRS   68 (72)
T ss_dssp             EEEEEEECCCSHHHHHHHHHHHHTTTTSEEEEEEETTTTEEEEEESSCHHHHHHHHHTTSSCEEE
T ss_pred             EEEEEEECcCcHHHHHHHHHHHHcCcCceEEEEEECCCCEEEEeecCCHHHHHHHHHHHCCccCC
Confidence            5678999999999999999999998 599999999999999999778999999999999998753

>d1fe0a_ d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX1) {Human (Homo sapiens), HAH1 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: ATX1 metallochaperone protein (ATOX1)
species: Human (Homo sapiens), HAH1 [TaxId: 9606]

Probab=99.64  E-value=2e-15  Score=72.40  Aligned_cols=62  Identities=42%  Similarity=0.748  Sum_probs=57.5

Q ss_pred             EEEEEeCCcChhhHHHHHHHHhCCCCeeEEEEEecCCEEEEEecCCHHHHHHHHHhcCCceEE
Q 033693            4 TVVLKVGMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKTGKKTAF   66 (113)
Q Consensus         4 ~~~~~ig~~c~~c~~~i~~~~~~~~gv~~~~~~~~~~~~~v~~~~~~~~i~~~i~~~g~~~~~   66 (113)
                      +.+|+++|+|.+|+++++++|++++|+ .+.+|+.++++.+....+++.+.+.++++||.+..
T Consensus         2 k~ef~V~M~C~~C~~~I~~aL~~~~gv-~v~v~~~~~~v~V~~~~~~~~i~~~I~~~Gy~a~l   63 (66)
T d1fe0a_           2 KHEFSVDMTCGGCAEAVSRVLNKLGGV-KYDIDLPNKKVCIESEHSMDTLLATLKKTGKTVSY   63 (66)
T ss_dssp             EEEEEECCCSHHHHHHHHHHHHHHCSE-EEEEETTTTEEEEEESSCHHHHHHHHHTTTSCEEE
T ss_pred             CEEEEEccCchHHHHHHHHHHhcCCCc-EEEEEcCCCEEEEEeeCCHHHHHHHHHHhCCeEEE
Confidence            568889999999999999999999998 69999999999999778999999999999998764

>d1sb6a_ d.58.17.1 (A:) Copper chaperone {Synechocystis sp. pcc 6803, Scatx1 [TaxId: 1148]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper chaperone
species: Synechocystis sp. pcc 6803, Scatx1 [TaxId: 1148]

Probab=99.63  E-value=2.9e-16  Score=75.05  Aligned_cols=60  Identities=25%  Similarity=0.533  Sum_probs=57.0

Q ss_pred             EEEEe-CCcChhhHHHHHHHHhCCCCeeEEEEEecCCEEEEEecCCHHHHHHHHHhcCCce
Q 033693            5 VVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPDAVLQTVSKTGKKT   64 (113)
Q Consensus         5 ~~~~i-g~~c~~c~~~i~~~~~~~~gv~~~~~~~~~~~~~v~~~~~~~~i~~~i~~~g~~~   64 (113)
                      .+|.+ ||+|.+|+.++++.+++++|+.++.+|+.++++.++...+++++.+.+.+.||.+
T Consensus         3 ~~l~V~gM~C~~C~~~Ie~~l~~~~gv~~v~v~~~~~~v~v~~~~~~~~i~~~i~~~GY~v   63 (64)
T d1sb6a_           3 IQLTVPTIACEACAEAVTKAVQNEDAQATVQVDLTSKKVTITSALGEEQLRTAIASAGHEV   63 (64)
T ss_dssp             EEEECTTTTSSSCTHHHHHHHHHHCTTCEEEEETTTTEEEEESSSCHHHHHHHHHHHCCCC
T ss_pred             EEEEECCccchhHHHHHHHHHhcCCCeeEEEccCCCCEEEEccCCCHHHHHHHHHHcCCCC
Confidence            58999 9999999999999999999999999999999999997789999999999999975

>d1p6ta1 d.58.17.1 (A:1-72) Potential copper-translocating P-type ATPase CopA (YvgX) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Potential copper-translocating P-type ATPase CopA (YvgX)
species: Bacillus subtilis [TaxId: 1423]

Probab=99.62  E-value=3.1e-15  Score=73.09  Aligned_cols=61  Identities=25%  Similarity=0.555  Sum_probs=56.5

Q ss_pred             EEEEEe-CCcChhhHHHHHHHHhCCCCeeEEEEEecCCEEEEE---ecCCHHHHHHHHHhcCCce
Q 033693            4 TVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVK---GNVQPDAVLQTVSKTGKKT   64 (113)
Q Consensus         4 ~~~~~i-g~~c~~c~~~i~~~~~~~~gv~~~~~~~~~~~~~v~---~~~~~~~i~~~i~~~g~~~   64 (113)
                      +..+++ ||+|++|+.++++.+++++|+.++.+++.++++.+.   ...+.+++.+.++++||+.
T Consensus         7 ~~~l~V~Gm~C~~C~~~Ie~~l~~~~gV~~v~v~~~~~~~~v~~d~~~~~~~~i~~~i~~~Gy~v   71 (72)
T d1p6ta1           7 EIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIEKLGYHV   71 (72)
T ss_dssp             EEEEEEESCCSSHHHHHHHHHHTTSSSEEEEEEEGGGTEEEEEECTTTSCHHHHHHHHHHHTCEE
T ss_pred             EEEEEECCeecHHHHHHHHHHHHcCCCcEEEEEEcCCCEEEEEECCCCCCHHHHHHHHHHhCCcc
Confidence            578999 999999999999999999999999999999999987   3478999999999999974

>d1q8la_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Menkes copper-transporting ATPase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=4.3e-15  Score=74.52  Aligned_cols=65  Identities=22%  Similarity=0.495  Sum_probs=59.1

Q ss_pred             EEEEEe-CCcChhhHHHHHHHHhCCCCeeEEEEEecCCEEEEE---ecCCHHHHHHHHHhcCCceEEec
Q 033693            4 TVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVK---GNVQPDAVLQTVSKTGKKTAFWE   68 (113)
Q Consensus         4 ~~~~~i-g~~c~~c~~~i~~~~~~~~gv~~~~~~~~~~~~~v~---~~~~~~~i~~~i~~~g~~~~~~~   68 (113)
                      .+.+.| ||+|.+|++++++++++++||.++++|+.++++.+.   ...+.+.+.+.+.++||++....
T Consensus        10 ~v~l~V~GMtC~~C~~~Ie~~l~~~~GV~~v~vn~~~~~v~v~~~~~~~~~~~i~~~I~~~Gy~a~~~~   78 (84)
T d1q8la_          10 VLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIVYQPHLISVEEMKKQIEAMGFPAFVKK   78 (84)
T ss_dssp             EEEEEECCTTTCSSCHHHHHHHHTCTTEEEEEECSTTTEEEEEECTTTCCHHHHHHHHHHTTCCEECSC
T ss_pred             EEEEEECCeEcHHHHHHHHHHHhcCCCceEEEEECCCCEEceeecccccCHHHHHHHHHHhCCccEEcC
Confidence            578999 999999999999999999999999999999999987   34789999999999999876543

>d1dcja_ d.68.3.3 (A:) SirA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: SirA-like
family: SirA-like
domain: SirA
species: Escherichia coli [TaxId: 562]

Probab=85.23  E-value=1  Score=20.87  Aligned_cols=55  Identities=13%  Similarity=0.161  Sum_probs=40.5

Q ss_pred             EEEEe-CCcChhhHHHHHHHHhCCCCeeEEEEEecCCEEEEE--ecCCHHHHHHHHHhcCCceEEec
Q 033693            5 VVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVK--GNVQPDAVLQTVSKTGKKTAFWE   68 (113)
Q Consensus         5 ~~~~i-g~~c~~c~~~i~~~~~~~~gv~~~~~~~~~~~~~v~--~~~~~~~i~~~i~~~g~~~~~~~   68 (113)
                      .++.. |+.|+....++.+++++++.         ...+.+.  .......+...++..|+......
T Consensus        10 ~~lD~~G~~CP~P~l~~k~al~~~~~---------G~~l~v~~dd~~a~~di~~~~~~~g~~~~~~~   67 (81)
T d1dcja_          10 HTLDALGLRCPEPVMMVRKTVRNMQP---------GETLLIIADDPATTRDIPGFCTFMEHELVAKE   67 (81)
T ss_dssp             EEECCTTCCTTHHHHHHHHHHHHCCT---------TCCEEEEECSTTHHHHHHHHHHHTTCEEEEEE
T ss_pred             eEEECCCCCCCHHHHHHHHHHHhCCC---------CCEEEEEeCCCcHHHHHHHHHHHcCCEEEEEE
Confidence            56778 99999999999999998633         2233333  44567778888999999875443

>d1je3a_ d.68.3.3 (A:) hypothetical protein YedF (EC005) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: SirA-like
family: SirA-like
domain: hypothetical protein YedF (EC005)
species: Escherichia coli [TaxId: 562]

Probab=82.47  E-value=1.6  Score=21.04  Aligned_cols=54  Identities=11%  Similarity=0.054  Sum_probs=40.1

Q ss_pred             EEEEe-CCcChhhHHHHHHHHhCCCCeeEEEEEecCCEEEEE--ecCCHHHHHHHHHhcCCceEEe
Q 033693            5 VVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVK--GNVQPDAVLQTVSKTGKKTAFW   67 (113)
Q Consensus         5 ~~~~i-g~~c~~c~~~i~~~~~~~~gv~~~~~~~~~~~~~v~--~~~~~~~i~~~i~~~g~~~~~~   67 (113)
                      .++.. |+.|+....++.+++.+++-         ++.+.+.  ......++...++..|+.....
T Consensus        28 ~~LD~~G~~CP~Pll~~k~~l~~l~~---------Ge~L~V~~dd~~a~~di~~~~~~~g~~v~~~   84 (97)
T d1je3a_          28 YRLDMVGEPCPYPAVATLEAMPQLKK---------GEILEVVSDCPQSINNIPLDARNHGYTVLDI   84 (97)
T ss_dssp             EEECSBCCSSSSSTHHHHHHTTTCCS---------SCEEEEEEBCSSSSCHHHHHHHHHTCSEEEE
T ss_pred             eEEeCCCCcCCHHHHHHHHHHHcCCC---------CCEEEEEeCCccHHHHHHHHHHHcCCEEEEE
Confidence            46778 99999999999999998733         2233333  3456778888899999987544