BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033695
(113 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OXW|A Chain A, The Crystal Structure Of Semet Patatin
pdb|1OXW|B Chain B, The Crystal Structure Of Semet Patatin
pdb|1OXW|C Chain C, The Crystal Structure Of Semet Patatin
Length = 373
Score = 79.0 bits (193), Expect = 6e-16, Method: Composition-based stats.
Identities = 46/97 (47%), Positives = 63/97 (64%), Gaps = 10/97 (10%)
Query: 3 SSSDMTDFHISTAFKALHSENGYLRIQDDTLTGDEASVDVATKKNLESLVGIGERLLKKP 62
+SS TD+++STAF+AL S+N YLR+Q++ LTG D A++ N E LV +GE LLKKP
Sbjct: 281 ASSYXTDYYLSTAFQALDSKNNYLRVQENALTGTTTEXDDASEANXELLVQVGENLLKKP 340
Query: 63 VTKVNFETGLCEPCGQGTNDEALIRLAKDLSKEKRIR 99
V++ N E T +EAL R AK LS K++R
Sbjct: 341 VSEDNPE----------TYEEALKRFAKLLSDRKKLR 367
>pdb|1RYO|A Chain A, Human Serum Transferrin, N-Lobe Bound With Oxalate
Length = 327
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 60 KKPVTKV--NFETGLCEPCGQGTNDEALIRLA 89
+KP+ K NF +G C PC GT+ L +L
Sbjct: 143 RKPLEKAVANFFSGSCAPCADGTDFPQLCQLC 174
>pdb|1SUV|C Chain C, Structure Of Human Transferrin Receptor-transferrin
Complex
pdb|1SUV|D Chain D, Structure Of Human Transferrin Receptor-transferrin
Complex
pdb|1A8E|A Chain A, Human Serum Transferrin, Recombinant N-Terminal Lobe
pdb|1A8F|A Chain A, Human Serum Transferrin, Recombinant N-Terminal Lobe
Length = 329
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 60 KKPVTKV--NFETGLCEPCGQGTNDEALIRLA 89
+KP+ K NF +G C PC GT+ L +L
Sbjct: 141 RKPLEKAVANFFSGSCAPCADGTDFPQLCQLC 172
>pdb|1N84|A Chain A, Human Serum Transferrin, N-Lobe
Length = 331
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 60 KKPVTKV--NFETGLCEPCGQGTNDEALIRLA 89
+KP+ K NF +G C PC GT+ L +L
Sbjct: 143 RKPLEKAVANFFSGSCAPCADGTDFPQLCQLC 174
>pdb|1D3K|A Chain A, Human Serum Transferrin
Length = 329
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 60 KKPVTKV--NFETGLCEPCGQGTNDEALIRLA 89
+KP+ K NF +G C PC GT+ L +L
Sbjct: 141 RKPLEKAVANFFSGSCAPCADGTDFPQLCQLC 172
>pdb|1N7W|A Chain A, Crystal Structure Of Human Serum Transferrin, N-Lobe L66w
Mutant
Length = 331
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 60 KKPVTKV--NFETGLCEPCGQGTNDEALIRLA 89
+KP+ K NF +G C PC GT+ L +L
Sbjct: 143 RKPLEKAVANFFSGSCAPCADGTDFPQLCQLC 174
>pdb|1N7X|A Chain A, Human Serum Transferrin, N-Lobe Y45e Mutant
Length = 331
Score = 28.1 bits (61), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 60 KKPVTKV--NFETGLCEPCGQGTNDEALIRLA 89
+KP+ K NF +G C PC GT+ L +L
Sbjct: 143 RKPLEKAVANFFSGSCAPCADGTDFPQLCQLC 174
>pdb|1D4N|A Chain A, Human Serum Transferrin
Length = 329
Score = 28.1 bits (61), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 60 KKPVTKV--NFETGLCEPCGQGTNDEALIRLA 89
+KP+ K NF +G C PC GT+ L +L
Sbjct: 141 RKPLEKAVANFFSGSCAPCADGTDFPQLCQLC 172
>pdb|1FQE|A Chain A, Crystal Structures Of Mutant (K206a) That Abolish The
Dilysine Interaction In The N-Lobe Of Human Transferrin
Length = 331
Score = 28.1 bits (61), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 60 KKPVTKV--NFETGLCEPCGQGTNDEALIRLA 89
+KP+ K NF +G C PC GT+ L +L
Sbjct: 143 RKPLEKAVANFFSGSCAPCADGTDFPQLCQLC 174
>pdb|1FQF|A Chain A, Crystal Structures Of Mutant (K296a) That Abolish The
Dilysine Interaction In The N-Lobe Of Human Transferrin
Length = 331
Score = 28.1 bits (61), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 60 KKPVTKV--NFETGLCEPCGQGTNDEALIRLA 89
+KP+ K NF +G C PC GT+ L +L
Sbjct: 143 RKPLEKAVANFFSGSCAPCADGTDFPQLCQLC 174
>pdb|1JQF|A Chain A, Human Transferrin N-Lobe Mutant H249q
Length = 334
Score = 28.1 bits (61), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 60 KKPVTKV--NFETGLCEPCGQGTNDEALIRLA 89
+KP+ K NF +G C PC GT+ L +L
Sbjct: 143 RKPLEKAVANFFSGSCAPCADGTDFPQLCQLC 174
>pdb|1B3E|A Chain A, Human Serum Transferrin, N-Terminal Lobe, Expressed In
Pichia Pastoris
Length = 330
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 60 KKPVTKV--NFETGLCEPCGQGTNDEALIRLA 89
+KP+ K NF +G C PC GT+ L +L
Sbjct: 140 RKPLEKAVANFFSGSCAPCADGTDFPQLCQLC 171
>pdb|3FGS|A Chain A, Crystal Structure Of G65rK206E DOUBLE MUTANT OF THE N-Lobe
Human Transferrin
Length = 337
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 60 KKPVTKV--NFETGLCEPCGQGTNDEALIRLA 89
+KP+ K NF +G C PC GT+ L +L
Sbjct: 143 RKPLEKAVANFFSGSCAPCADGTDFPQLCQLC 174
>pdb|1OQH|A Chain A, Crystal Structure Of The R124a Mutant Of The N-lobe Human
Transferrin
Length = 337
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 60 KKPVTKV--NFETGLCEPCGQGTNDEALIRLA 89
+KP+ K NF +G C PC GT+ L +L
Sbjct: 143 RKPLEKAVANFFSGSCAPCADGTDFPQLCQLC 174
>pdb|1BP5|A Chain A, Human Serum Transferrin, Recombinant N-Terminal Lobe, Apo
Form
pdb|1BP5|B Chain B, Human Serum Transferrin, Recombinant N-Terminal Lobe, Apo
Form
pdb|1BP5|C Chain C, Human Serum Transferrin, Recombinant N-Terminal Lobe, Apo
Form
pdb|1BP5|D Chain D, Human Serum Transferrin, Recombinant N-Terminal Lobe, Apo
Form
pdb|1BTJ|A Chain A, Human Serum Transferrin, Recombinant N-Terminal Lobe, Apo
Form, Crystal Form 2
pdb|1BTJ|B Chain B, Human Serum Transferrin, Recombinant N-Terminal Lobe, Apo
Form, Crystal Form 2
Length = 337
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 60 KKPVTKV--NFETGLCEPCGQGTNDEALIRLA 89
+KP+ K NF +G C PC GT+ L +L
Sbjct: 143 RKPLEKAVANFFSGSCAPCADGTDFPQLCQLC 174
>pdb|1DTG|A Chain A, Human Transferrin N-Lobe Mutant H249e
Length = 334
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 60 KKPVTKV--NFETGLCEPCGQGTNDEALIRLA 89
+KP+ K NF +G C PC GT+ L +L
Sbjct: 143 RKPLEKAVANFFSGSCAPCADGTDFPQLCQLC 174
>pdb|2O84|X Chain X, Crystal Structure Of K206e Mutant Of N-Lobe Human
Transferrin
Length = 337
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 60 KKPVTKV--NFETGLCEPCGQGTNDEALIRLA 89
+KP+ K NF +G C PC GT+ L +L
Sbjct: 143 RKPLEKAVANFFSGSCAPCADGTDFPQLCQLC 174
>pdb|1OQG|A Chain A, Crystal Structure Of The D63e Mutant Of The N-Lobe Human
Transferrin
Length = 337
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 60 KKPVTKV--NFETGLCEPCGQGTNDEALIRLA 89
+KP+ K NF +G C PC GT+ L +L
Sbjct: 143 RKPLEKAVANFFSGSCAPCADGTDFPQLCQLC 174
>pdb|2O7U|B Chain B, Crystal Structure Of K206eK296E MUTANT OF THE N-Terminal
Half Molecule Of Human Transferrin
pdb|2O7U|A Chain A, Crystal Structure Of K206eK296E MUTANT OF THE N-Terminal
Half Molecule Of Human Transferrin
pdb|2O7U|C Chain C, Crystal Structure Of K206eK296E MUTANT OF THE N-Terminal
Half Molecule Of Human Transferrin
pdb|2O7U|D Chain D, Crystal Structure Of K206eK296E MUTANT OF THE N-Terminal
Half Molecule Of Human Transferrin
pdb|2O7U|E Chain E, Crystal Structure Of K206eK296E MUTANT OF THE N-Terminal
Half Molecule Of Human Transferrin
pdb|2O7U|F Chain F, Crystal Structure Of K206eK296E MUTANT OF THE N-Terminal
Half Molecule Of Human Transferrin
pdb|2O7U|G Chain G, Crystal Structure Of K206eK296E MUTANT OF THE N-Terminal
Half Molecule Of Human Transferrin
pdb|2O7U|H Chain H, Crystal Structure Of K206eK296E MUTANT OF THE N-Terminal
Half Molecule Of Human Transferrin
pdb|2O7U|I Chain I, Crystal Structure Of K206eK296E MUTANT OF THE N-Terminal
Half Molecule Of Human Transferrin
Length = 337
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 60 KKPVTKV--NFETGLCEPCGQGTNDEALIRLA 89
+KP+ K NF +G C PC GT+ L +L
Sbjct: 143 RKPLEKAVANFFSGSCAPCADGTDFPQLCQLC 174
>pdb|4H0W|A Chain A, Bismuth Bound Human Serum Transferrin
Length = 679
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 60 KKPVTKV--NFETGLCEPCGQGTNDEALIRLA 89
+KP+ K NF +G C PC GT+ L +L
Sbjct: 143 RKPLEKAVANFFSGSCAPCADGTDFPQLCQLC 174
>pdb|3S9L|C Chain C, Complex Between Transferrin Receptor 1 And Transferrin
With Iron In The N-Lobe, Cryocooled 2
pdb|3S9L|D Chain D, Complex Between Transferrin Receptor 1 And Transferrin
With Iron In The N-Lobe, Cryocooled 2
pdb|3S9M|C Chain C, Complex Between Transferrin Receptor 1 And Transferrin
With Iron In The N-Lobe, Cryocooled 1
pdb|3S9M|D Chain D, Complex Between Transferrin Receptor 1 And Transferrin
With Iron In The N-Lobe, Cryocooled 1
pdb|3S9N|C Chain C, Complex Between Transferrin Receptor 1 And Transferrin
With Iron In The N-Lobe, Room Temperature
pdb|3S9N|D Chain D, Complex Between Transferrin Receptor 1 And Transferrin
With Iron In The N-Lobe, Room Temperature
Length = 693
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 60 KKPVTKV--NFETGLCEPCGQGTNDEALIRLA 89
+KP+ K NF +G C PC GT+ L +L
Sbjct: 157 RKPLEKAVANFFSGSCAPCADGTDFPQLCQLC 188
>pdb|3V83|A Chain A, The 2.1 Angstrom Crystal Structure Of Diferric Human
Transferrin
pdb|3V83|B Chain B, The 2.1 Angstrom Crystal Structure Of Diferric Human
Transferrin
pdb|3V83|C Chain C, The 2.1 Angstrom Crystal Structure Of Diferric Human
Transferrin
pdb|3V83|D Chain D, The 2.1 Angstrom Crystal Structure Of Diferric Human
Transferrin
pdb|3V83|E Chain E, The 2.1 Angstrom Crystal Structure Of Diferric Human
Transferrin
pdb|3V83|F Chain F, The 2.1 Angstrom Crystal Structure Of Diferric Human
Transferrin
pdb|3V8X|B Chain B, The Crystal Structure Of Transferrin Binding Protein A
(Tbpa) From Neisserial Meningitidis Serogroup B In
Complex With Full Length Human Transferrin
Length = 698
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 60 KKPVTKV--NFETGLCEPCGQGTNDEALIRL 88
+KP+ K NF +G C PC GT+ L +L
Sbjct: 162 RKPLEKAVANFFSGSCAPCADGTDFPQLCQL 192
>pdb|3QYT|A Chain A, Diferric Bound Human Serum Transferrin
Length = 679
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 60 KKPVTKV--NFETGLCEPCGQGTNDEALIRL 88
+KP+ K NF +G C PC GT+ L +L
Sbjct: 143 RKPLEKAVANFFSGSCAPCADGTDFPQLCQL 173
>pdb|2HAV|A Chain A, Apo-Human Serum Transferrin (Glycosylated)
pdb|2HAV|B Chain B, Apo-Human Serum Transferrin (Glycosylated)
Length = 676
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 60 KKPVTKV--NFETGLCEPCGQGTNDEALIRL 88
+KP+ K NF +G C PC GT+ L +L
Sbjct: 140 RKPLEKAVANFFSGSCAPCADGTDFPQLCQL 170
>pdb|3VE1|B Chain B, The 2.9 Angstrom Crystal Structure Of Transferrin Binding
Protein B (Tbpb) From Serogroup B M982 Neisseria
Meningitidis In Complex With Human Transferrin
pdb|3VE1|D Chain D, The 2.9 Angstrom Crystal Structure Of Transferrin Binding
Protein B (Tbpb) From Serogroup B M982 Neisseria
Meningitidis In Complex With Human Transferrin
Length = 679
Score = 27.3 bits (59), Expect = 1.9, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 60 KKPVTKV--NFETGLCEPCGQGTNDEALIRL 88
+KP+ K NF +G C PC GT+ L +L
Sbjct: 143 RKPLEKAVANFFSGSCAPCADGTDFPQLCQL 173
>pdb|2HAU|A Chain A, Apo-Human Serum Transferrin (Non-Glycosylated)
pdb|2HAU|B Chain B, Apo-Human Serum Transferrin (Non-Glycosylated)
Length = 676
Score = 27.3 bits (59), Expect = 1.9, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 60 KKPVTKV--NFETGLCEPCGQGTNDEALIRL 88
+KP+ K NF +G C PC GT+ L +L
Sbjct: 140 RKPLEKAVANFFSGSCAPCADGTDFPQLCQL 170
>pdb|4EG5|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1312
pdb|4EG5|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1312
Length = 542
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 27/58 (46%)
Query: 35 GDEASVDVATKKNLESLVGIGERLLKKPVTKVNFETGLCEPCGQGTNDEALIRLAKDL 92
GD + ++ + N E +G +++ K+N P DE+LI+L KDL
Sbjct: 360 GDYSDKNMIARLNGELADTLGNLVMRCTSAKINVNGEWPSPAAYTEEDESLIQLIKDL 417
>pdb|3TUN|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1356
pdb|3TUN|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1356
pdb|4EG4|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1289
pdb|4EG4|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1289
pdb|4EG7|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1331
pdb|4EG7|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1331
pdb|4EGA|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1320
pdb|4EGA|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1320
pdb|3U1Z|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1433
pdb|3U1Z|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1433
Length = 542
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 27/58 (46%)
Query: 35 GDEASVDVATKKNLESLVGIGERLLKKPVTKVNFETGLCEPCGQGTNDEALIRLAKDL 92
GD + ++ + N E +G +++ K+N P DE+LI+L KDL
Sbjct: 360 GDYSDKNMIARLNGELADTLGNLVMRCTSAKINVNGEWPSPAAYTEEDESLIQLIKDL 417
>pdb|4EG1|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Substrate Methionine
pdb|4EG1|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Substrate Methionine
pdb|4EG3|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Product Methionyl-Adenylate
pdb|4EG3|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Product Methionyl-Adenylate
pdb|4EG6|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1325
pdb|4EG6|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1325
pdb|4EG8|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Compound Chem 89
pdb|4EG8|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Compound Chem 89
pdb|3U1E|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1387
pdb|3U1E|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1387
pdb|3U1F|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1392
pdb|3U1F|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1392
pdb|3U1G|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1415
pdb|3U1G|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1415
pdb|3U20|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1444
pdb|3U20|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1444
Length = 542
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 27/58 (46%)
Query: 35 GDEASVDVATKKNLESLVGIGERLLKKPVTKVNFETGLCEPCGQGTNDEALIRLAKDL 92
GD + ++ + N E +G +++ K+N P DE+LI+L KDL
Sbjct: 360 GDYSDKNMIARLNGELADTLGNLVMRCTSAKINVNGEWPSPAAYTEEDESLIQLIKDL 417
>pdb|3SWK|A Chain A, Crystal Structure Of Vimentin Coil1b Fragment
pdb|3SWK|B Chain B, Crystal Structure Of Vimentin Coil1b Fragment
Length = 86
Score = 25.4 bits (54), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 26 LRIQDDTLTGDEASVDVATKKNLESLVGIGERLLKKPVTKVNFETGLCEPCGQGTNDEAL 85
LR Q D LT D+A V+V E ++ + E+L ++ + + E L + Q ++ +L
Sbjct: 5 LRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTL-QSFRQDVDNASL 63
Query: 86 IRL 88
RL
Sbjct: 64 ARL 66
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.129 0.353
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,097,351
Number of Sequences: 62578
Number of extensions: 112699
Number of successful extensions: 261
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 253
Number of HSP's gapped (non-prelim): 38
length of query: 113
length of database: 14,973,337
effective HSP length: 77
effective length of query: 36
effective length of database: 10,154,831
effective search space: 365573916
effective search space used: 365573916
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)