Query 033695
Match_columns 113
No_of_seqs 106 out of 246
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 05:13:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033695.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033695hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd07214 Pat17_isozyme_like Pat 99.7 3.2E-17 7E-22 133.3 6.5 71 1-71 279-349 (349)
2 cd07215 Pat17_PNPLA8_PNPLA9_li 99.5 6.6E-14 1.4E-18 112.4 6.7 72 1-92 258-329 (329)
3 KOG0513 Ca2+-independent phosp 99.2 2.5E-11 5.4E-16 103.9 6.5 107 2-110 344-460 (503)
4 cd07199 Pat17_PNPLA8_PNPLA9_li 98.3 1E-06 2.2E-11 68.2 5.6 59 1-60 200-258 (258)
5 cd07211 Pat_PNPLA8 Patatin-lik 98.3 1.4E-06 3E-11 69.2 5.3 52 4-61 256-307 (308)
6 cd07213 Pat17_PNPLA8_PNPLA9_li 98.2 2.5E-06 5.4E-11 67.5 4.6 49 1-58 236-284 (288)
7 cd07212 Pat_PNPLA9 Patatin-lik 97.0 0.00041 9E-09 56.0 2.6 38 22-61 273-310 (312)
8 cd07216 Pat17_PNPLA8_PNPLA9_li 96.4 0.0055 1.2E-07 48.8 4.9 54 1-59 255-308 (309)
9 KOG4231 Intracellular membrane 86.3 0.99 2.1E-05 40.3 4.0 56 19-95 677-732 (763)
10 PF00384 Molybdopterin: Molybd 67.8 6.5 0.00014 31.7 3.4 35 59-96 2-37 (432)
11 cd02766 MopB_3 The MopB_3 CD i 63.5 9.3 0.0002 32.4 3.6 36 59-97 56-91 (501)
12 cd02751 MopB_DMSOR-like The Mo 54.6 15 0.00033 31.8 3.5 36 59-97 48-94 (609)
13 cd02770 MopB_DmsA-EC This CD ( 51.1 19 0.00041 31.4 3.5 36 59-97 60-96 (617)
14 cd02750 MopB_Nitrate-R-NarG-li 49.2 23 0.0005 29.6 3.7 38 57-97 65-103 (461)
15 cd02762 MopB_1 The MopB_1 CD i 47.5 24 0.00051 30.1 3.5 33 59-97 55-87 (539)
16 PF02676 TYW3: Methyltransfera 46.7 37 0.00079 26.1 4.1 34 42-94 169-202 (205)
17 TIGR02166 dmsA_ynfE anaerobic 45.8 26 0.00056 31.3 3.6 36 59-97 105-141 (797)
18 cd02757 MopB_Arsenate-R This C 44.8 28 0.00061 29.8 3.6 37 58-97 56-97 (523)
19 cd02763 MopB_2 The MopB_2 CD i 44.6 28 0.0006 31.4 3.6 36 59-97 55-91 (679)
20 cd02759 MopB_Acetylene-hydrata 41.7 34 0.00073 28.7 3.5 36 59-97 55-91 (477)
21 cd02772 MopB_NDH-1_NuoG2 MopB_ 41.3 32 0.00069 28.0 3.2 32 60-97 56-87 (414)
22 cd02769 MopB_DMSOR-BSOR-TMAOR 41.1 35 0.00077 29.7 3.7 36 59-97 47-94 (609)
23 PRK14990 anaerobic dimethyl su 41.0 34 0.00074 30.8 3.6 37 58-97 119-156 (814)
24 cd02755 MopB_Thiosulfate-R-lik 40.6 35 0.00076 28.4 3.5 36 59-97 56-92 (454)
25 PF04472 DUF552: Protein of un 40.5 30 0.00064 22.0 2.4 42 44-94 5-46 (73)
26 PF01434 Peptidase_M41: Peptid 39.5 50 0.0011 25.0 3.9 39 39-96 165-203 (213)
27 PRK13532 nitrate reductase cat 39.0 37 0.0008 30.8 3.6 36 58-97 97-137 (830)
28 PRK15488 thiosulfate reductase 37.9 42 0.0009 30.0 3.7 37 59-98 99-136 (759)
29 cd02765 MopB_4 The MopB_4 CD i 37.7 42 0.00092 29.0 3.6 36 59-97 56-92 (567)
30 TIGR01706 NAPA periplasmic nit 37.2 43 0.00093 30.5 3.7 36 59-97 98-137 (830)
31 PRK04235 hypothetical protein; 36.1 74 0.0016 24.5 4.4 35 42-95 159-193 (196)
32 cd02760 MopB_Phenylacetyl-CoA- 35.0 49 0.0011 30.1 3.7 37 59-98 59-100 (760)
33 cd02764 MopB_PHLH The MopB_PHL 34.4 35 0.00076 29.0 2.6 34 59-97 100-133 (524)
34 TIGR00509 bisC_fam molybdopter 34.2 50 0.0011 29.6 3.6 37 59-98 45-93 (770)
35 PF07240 Turandot: Stress-indu 34.1 97 0.0021 21.0 4.2 22 39-60 2-24 (85)
36 cd02773 MopB_Res-Cmplx1_Nad11 33.9 40 0.00088 27.2 2.8 32 58-95 53-84 (375)
37 cd02752 MopB_Formate-Dh-Na-lik 33.7 49 0.0011 29.7 3.4 36 59-98 55-90 (649)
38 PRK15102 trimethylamine N-oxid 33.3 53 0.0012 29.8 3.7 37 59-98 91-139 (825)
39 cd02771 MopB_NDH-1_NuoG2-N7 Mo 32.8 49 0.0011 27.4 3.1 31 60-96 56-86 (472)
40 cd00368 Molybdopterin-Binding 31.9 64 0.0014 25.4 3.5 35 59-97 55-89 (374)
41 TIGR03479 DMSO_red_II_alp DMSO 30.9 61 0.0013 29.9 3.6 37 59-98 121-158 (912)
42 cd02768 MopB_NADH-Q-OR-NuoG2 M 29.4 54 0.0012 26.2 2.8 31 60-96 56-86 (386)
43 TIGR01591 Fdh-alpha formate de 29.1 67 0.0014 28.0 3.4 33 59-97 54-86 (671)
44 TIGR02164 torA trimethylamine- 28.8 72 0.0016 28.9 3.7 37 59-98 88-136 (822)
45 cd02753 MopB_Formate-Dh-H Form 27.9 68 0.0015 26.9 3.2 33 59-97 55-87 (512)
46 PRK14470 ribosomal RNA large s 27.8 90 0.002 25.7 3.8 47 43-93 259-306 (336)
47 cd02767 MopB_ydeP The MopB_yde 26.7 61 0.0013 28.5 2.8 32 60-95 66-97 (574)
48 cd02756 MopB_Arsenite-Ox Arsen 25.1 86 0.0019 28.3 3.5 33 59-97 118-150 (676)
49 PF08833 Axin_b-cat_bind: Axin 25.1 58 0.0013 19.7 1.7 17 5-21 5-21 (45)
50 TIGR02693 arsenite_ox_L arseni 23.7 88 0.0019 28.6 3.3 34 58-97 115-148 (806)
51 cd02754 MopB_Nitrate-R-NapA-li 23.5 95 0.0021 26.5 3.3 33 60-97 56-88 (565)
52 PRK09130 NADH dehydrogenase su 23.2 79 0.0017 28.4 2.9 30 59-94 273-302 (687)
53 KOG2567 Uncharacterized conser 22.9 84 0.0018 24.1 2.6 55 33-87 14-69 (179)
54 PRK14991 tetrathionate reducta 22.8 99 0.0021 29.3 3.5 36 59-97 158-205 (1031)
55 TIGR01973 NuoG NADH-quinone ox 21.8 83 0.0018 27.4 2.7 30 60-94 272-301 (603)
56 PF09496 CENP-O: Cenp-O kineto 21.4 2.1E+02 0.0046 19.0 4.1 31 51-95 46-76 (90)
57 TIGR01701 Fdhalpha-like oxidor 21.3 92 0.002 28.2 2.9 30 62-95 103-132 (743)
58 PRK13958 N-(5'-phosphoribosyl) 21.3 1.8E+02 0.0039 22.1 4.1 44 43-93 161-204 (207)
59 PRK09129 NADH dehydrogenase su 21.1 1.1E+02 0.0023 27.6 3.3 32 60-97 274-305 (776)
60 PF14305 ATPgrasp_TupA: TupA-l 21.1 66 0.0014 25.0 1.8 32 38-69 171-203 (239)
61 TIGR03129 one_C_dehyd_B formyl 20.1 1.1E+02 0.0023 24.7 2.8 31 59-95 46-76 (421)
No 1
>cd07214 Pat17_isozyme_like Patatin-like phospholipase of plants. Pat17 is an isozyme of patatin cloned from Solanum cardiophyllum. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue, and Nu = nucleophile). Patatin-like phospholipase are included in this group. Members of this family have also been found in vertebrates.
Probab=99.69 E-value=3.2e-17 Score=133.30 Aligned_cols=71 Identities=63% Similarity=0.953 Sum_probs=66.0
Q ss_pred CcchHHHHHHHHHHHhhhcCCCCCeeeeecCCCCCCchhhhhccHHHHHHHHHHHHHhhcCCcccccccCC
Q 033695 1 MQSSSDMTDFHISTAFKALHSENGYLRIQDDTLTGDEASVDVATKKNLESLVGIGERLLKKPVTKVNFETG 71 (113)
Q Consensus 1 ~~gssDmVD~~ls~lf~~~~~~~nYlRIQ~~~L~~~~~~mD~At~~Nl~~L~~ig~~LL~~~v~~vn~~tg 71 (113)
|+|++|||||+++++|+.+++.+||+|||++.+.+...+||++|++|++.|+++|++||++++..+|++||
T Consensus 279 ~~~~~~~~d~~~~~~~~~~~~~~~Y~Ri~~~~~~~~~~~~d~~~~~ni~~L~~~a~~~l~~~~~~~~~~~~ 349 (349)
T cd07214 279 SNASSDMVDYHLSVIFQALDSEKNYLRIQDDSLTGTASSVDDATEENLEKLVEIGKKLLKKPVSRVNLETG 349 (349)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcEEEEecCCCCCcccCcccCCHHHHHHHHHHHHHHHhCcccccCCCCC
Confidence 57899999999999999888999999999995566557899999999999999999999999999999997
No 2
>cd07215 Pat17_PNPLA8_PNPLA9_like2 Patatin-like phospholipase of bacteria. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=99.48 E-value=6.6e-14 Score=112.45 Aligned_cols=72 Identities=29% Similarity=0.507 Sum_probs=66.7
Q ss_pred CcchHHHHHHHHHHHhhhcCCCCCeeeeecCCCCCCchhhhhccHHHHHHHHHHHHHhhcCCcccccccCCccccCCCCC
Q 033695 1 MQSSSDMTDFHISTAFKALHSENGYLRIQDDTLTGDEASVDVATKKNLESLVGIGERLLKKPVTKVNFETGLCEPCGQGT 80 (113)
Q Consensus 1 ~~gssDmVD~~ls~lf~~~~~~~nYlRIQ~~~L~~~~~~mD~At~~Nl~~L~~ig~~LL~~~v~~vn~~tg~~e~~~~~t 80 (113)
|+|++|+|||+++++|+...+.++|+|||++ ++....+||+++++||+.|..+|+++++ .
T Consensus 258 ~~~~~~~~d~~~~~l~~~~~~~~~Y~Ri~~~-l~~~~~~lD~a~~~~i~~L~~~~~~~~~-------------------~ 317 (329)
T cd07215 258 MDGASQTVDYQLKQIFDAEGDQQQYLRIQPE-LEDADPEMDDASPENLEKLREVGQALAE-------------------D 317 (329)
T ss_pred HhhhHHHHHHHHHHHHhhcCCCCceEEEeCC-CCCCccccccCCHHHHHHHHHHHHHHHH-------------------H
Confidence 5788999999999999877888999999999 8887778999999999999999999999 7
Q ss_pred HHHHHHHHHHHH
Q 033695 81 NDEALIRLAKDL 92 (113)
Q Consensus 81 N~e~L~~fA~~L 92 (113)
|++.|+.||+.|
T Consensus 318 ~~~~i~~~~~~~ 329 (329)
T cd07215 318 HKDQLDEIVDRL 329 (329)
T ss_pred hHHHHHHHHHhC
Confidence 999999999875
No 3
>KOG0513 consensus Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=99.20 E-value=2.5e-11 Score=103.89 Aligned_cols=107 Identities=36% Similarity=0.429 Sum_probs=97.2
Q ss_pred cchHHHHH----HHHHHHhhhcCCCCCeeeee--cCCCCCCchhhhhcc-HHHHHHHHH--HHHHhhcCCcccccccCCc
Q 033695 2 QSSSDMTD----FHISTAFKALHSENGYLRIQ--DDTLTGDEASVDVAT-KKNLESLVG--IGERLLKKPVTKVNFETGL 72 (113)
Q Consensus 2 ~gssDmVD----~~ls~lf~~~~~~~nYlRIQ--~~~L~~~~~~mD~At-~~Nl~~L~~--ig~~LL~~~v~~vn~~tg~ 72 (113)
++|.|+|| ++..++|.+.+++.+|.||| .....|....||... ..|+..+.. +|++|+..++.+.+.++|+
T Consensus 344 ~~s~d~v~~~y~~~k~~~F~~~r~~~~~~~Ie~~~~~~~G~~~~~di~~~~~nl~~~~~~~~~~~l~~~rn~~~~i~~~~ 423 (503)
T KOG0513|consen 344 DGSSDEVDRMYLQMKDVVFDGLRSEYNYVRIECAIDRLFGDAPSMDIDGIRLNLTGLLVDITGEELLMARNYRHNINGGK 423 (503)
T ss_pred cccHHHHHHHHHHHhHHhhhcccCCCCccchhhhhhcccCccccccCCcchhhhhhhhccccHHHHHHhhcccccccccc
Confidence 68999999 99999999999999999999 666788888999888 679999999 9999999999999999999
Q ss_pred cccCCC-CCHHHHHHHHHHHHHHHHhhhhcCCCCCcccc
Q 033695 73 CEPCGQ-GTNDEALIRLAKDLSKEKRIRDMRSPQGKVAK 110 (113)
Q Consensus 73 ~e~~~~-~tN~e~L~~fA~~L~~Erk~R~~~~~~~~~~~ 110 (113)
|..+ .+|.++++++|.+|+.|+++|+.+.|+....+
T Consensus 424 --~~~~~~snde~~~~~~~~l~we~~rrss~a~~~f~~~ 460 (503)
T KOG0513|consen 424 --PRSEEVSNDEALEEPAMQLVWEAKRRSSRAPPTFPPS 460 (503)
T ss_pred --ccccccccchhhhhHHHHHHHHHHHhccCCCCccccc
Confidence 6555 89999999999999999999999988875544
No 4
>cd07199 Pat17_PNPLA8_PNPLA9_like Patatin-like phospholipase; includes PNPLA8, PNPLA9, and Pat17. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=98.33 E-value=1e-06 Score=68.16 Aligned_cols=59 Identities=32% Similarity=0.442 Sum_probs=52.7
Q ss_pred CcchHHHHHHHHHHHhhhcCCCCCeeeeecCCCCCCchhhhhccHHHHHHHHHHHHHhhc
Q 033695 1 MQSSSDMTDFHISTAFKALHSENGYLRIQDDTLTGDEASVDVATKKNLESLVGIGERLLK 60 (113)
Q Consensus 1 ~~gssDmVD~~ls~lf~~~~~~~nYlRIQ~~~L~~~~~~mD~At~~Nl~~L~~ig~~LL~ 60 (113)
|+++.|++|+++..+|+.....++|+||++. +......+|+++++|++.|..++++++.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~y~R~~~~-~~~~~~~~d~~~~~~~~~l~~~~~~~~~ 258 (258)
T cd07199 200 MDAQSDGVDQWLDLLFGSLDSKDNYLRINPP-LPGPIPALDDASEANLLALDSAAFELIE 258 (258)
T ss_pred HHhhHHHHHHHHHHHhhcccCCCeEEEEcCC-CCCCcccchhCCHHHHHHHHHHHHHHhC
Confidence 4678999999999999866678899999999 8888878999999999999999998863
No 5
>cd07211 Pat_PNPLA8 Patatin-like phospholipase domain containing protein 8. PNPLA8 is a Ca-independent myocardial phospholipase which maintains mitochondrial integrity. PNPLA8 is also known as iPLA2-gamma. In humans, it is predominantly expressed in heart tissue. iPLA2-gamma can catalyze both phospholipase A1 and A2 reactions (PLA1 and PLA2 respectively). This family includes PNPLA8 (iPLA2-gamma) from Homo sapiens and iPLA2-2 from Mus musculus.
Probab=98.27 E-value=1.4e-06 Score=69.22 Aligned_cols=52 Identities=12% Similarity=0.212 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHHhhhcCCCCCeeeeecCCCCCCchhhhhccHHHHHHHHHHHHHhhcC
Q 033695 4 SSDMTDFHISTAFKALHSENGYLRIQDDTLTGDEASVDVATKKNLESLVGIGERLLKK 61 (113)
Q Consensus 4 ssDmVD~~ls~lf~~~~~~~nYlRIQ~~~L~~~~~~mD~At~~Nl~~L~~ig~~LL~~ 61 (113)
+++.||+++..++. +++|+|||+. +... .+||+++++||+.|.++|+++|++
T Consensus 256 ~~~~~~~~~~~~~~----~~~Y~R~~~~-~~~~-~~ld~~~~~~i~~l~~~~~~yl~~ 307 (308)
T cd07211 256 DTERVHTALDDLLP----PDVYFRFNPV-MSEC-VELDETRPEKLDQLQDDTLEYIKR 307 (308)
T ss_pred ChHHHHHHHHHhcC----CCceEEeccc-ccCC-CCcccCCHHHHHHHHHHHHHHHhc
Confidence 56899999999873 5799999999 7666 789999999999999999999974
No 6
>cd07213 Pat17_PNPLA8_PNPLA9_like1 Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=98.16 E-value=2.5e-06 Score=67.47 Aligned_cols=49 Identities=29% Similarity=0.529 Sum_probs=42.5
Q ss_pred CcchHHHHHHHHHHHhhhcCCCCCeeeeecCCCCCCchhhhhccHHHHHHHHHHHHHh
Q 033695 1 MQSSSDMTDFHISTAFKALHSENGYLRIQDDTLTGDEASVDVATKKNLESLVGIGERL 58 (113)
Q Consensus 1 ~~gssDmVD~~ls~lf~~~~~~~nYlRIQ~~~L~~~~~~mD~At~~Nl~~L~~ig~~L 58 (113)
|+|.++++|++++++|+ ++|+|||+. ++ ..+|..+++||+.|+++|++.
T Consensus 236 ~~~~~~~~~~~~~~~~~-----~~y~Ri~~~-l~---~~~~~~~~~~i~~l~~~~~~~ 284 (288)
T cd07213 236 MDAGVDAADFQCRQLLG-----ERYFRLDPV-LP---ANIDLDDNKQIEELVEIANTV 284 (288)
T ss_pred HHHHHHHHHHHHHHHcc-----CcEEEeCCC-CC---cccCccCHHHHHHHHHHHHhc
Confidence 46889999999999984 799999999 74 247888899999999999875
No 7
>cd07212 Pat_PNPLA9 Patatin-like phospholipase domain containing protein 9. PNPLA9 is a Ca-independent phospholipase that catalyzes the hydrolysis of glycerophospholipids at the sn-2 position. PNPLA9 is also known as PLA2G6 (phospholipase A2 group VI) or iPLA2beta. PLA2G6 is stimulated by ATP and inhibited by bromoenol lactone (BEL). In humans, PNPLA9 in expressed ubiquitously and is involved in signal transduction, cell proliferation, and apoptotic cell death. Mutations in human PLA2G6 leads to infantile neuroaxonal dystrophy (INAD) and idiopathic neurodegeneration with brain iron accumulation (NBIA). This family includes PLA2G6 from Homo sapiens and Rattus norvegicus.
Probab=97.04 E-value=0.00041 Score=55.98 Aligned_cols=38 Identities=16% Similarity=0.228 Sum_probs=33.9
Q ss_pred CCCeeeeecCCCCCCchhhhhccHHHHHHHHHHHHHhhcC
Q 033695 22 ENGYLRIQDDTLTGDEASVDVATKKNLESLVGIGERLLKK 61 (113)
Q Consensus 22 ~~nYlRIQ~~~L~~~~~~mD~At~~Nl~~L~~ig~~LL~~ 61 (113)
+.+|+|+|+. |. ...+||+++++||.+|...++.+|.+
T Consensus 273 ~~~Y~Rfn~~-l~-~~~~lde~~~~~l~~l~~~~~~yi~~ 310 (312)
T cd07212 273 GIPYFRFSPP-LS-KDIMLDETDDEDLVNMLWDTEVYIYT 310 (312)
T ss_pred CCceEEeCCc-cC-CCcCCCcCCHHHHHHHHHHHHHHHHh
Confidence 4689999999 65 56699999999999999999999983
No 8
>cd07216 Pat17_PNPLA8_PNPLA9_like3 Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=96.43 E-value=0.0055 Score=48.83 Aligned_cols=54 Identities=17% Similarity=0.316 Sum_probs=41.5
Q ss_pred CcchHHHHHHHHHHHhhhcCCCCCeeeeecCCCCCCchhhhhccHHHHHHHHHHHHHhh
Q 033695 1 MQSSSDMTDFHISTAFKALHSENGYLRIQDDTLTGDEASVDVATKKNLESLVGIGERLL 59 (113)
Q Consensus 1 ~~gssDmVD~~ls~lf~~~~~~~nYlRIQ~~~L~~~~~~mD~At~~Nl~~L~~ig~~LL 59 (113)
+++.++.+|++....+ +...++|+|||++ +.....+||+ .++++.|...++++|
T Consensus 255 ~d~~~~~~~~~~~~~~--~~~~~~Y~R~n~~-~~~~~~~ld~--~~~~~~l~~~t~~yl 308 (309)
T cd07216 255 TDTEAEAKRFSAEHSE--LDEEGRYFRFNVP-HGLEDVGLDE--YEKMEEIVSLTREYL 308 (309)
T ss_pred hChHHHHHHHHHHHhc--cCCCCeEEEECCC-CCCCCCChhh--hccHHHHHHHHHHhh
Confidence 3677788888877622 1235799999999 7656568999 568999999999887
No 9
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=86.28 E-value=0.99 Score=40.32 Aligned_cols=56 Identities=18% Similarity=0.205 Sum_probs=47.9
Q ss_pred cCCCCCeeeeecCCCCCCchhhhhccHHHHHHHHHHHHHhhcCCcccccccCCccccCCCCCHHHHHHHHHHHHHHH
Q 033695 19 LHSENGYLRIQDDTLTGDEASVDVATKKNLESLVGIGERLLKKPVTKVNFETGLCEPCGQGTNDEALIRLAKDLSKE 95 (113)
Q Consensus 19 ~~~~~nYlRIQ~~~L~~~~~~mD~At~~Nl~~L~~ig~~LL~~~v~~vn~~tg~~e~~~~~tN~e~L~~fA~~L~~E 95 (113)
.-+++.|+|+.+- .... -.+|-..++-+..|...+++.++ .|..+++..|+.|+.+
T Consensus 677 mLPe~~YfRFNPv-m~~~-~~LDE~d~e~l~ql~~~~e~yI~-------------------rN~qk~k~vaerL~l~ 732 (763)
T KOG4231|consen 677 MLPEIQYFRFNPV-MDRC-MELDETDPEILLQLEAAIEEYIQ-------------------RNPQKFKNVAERLTLP 732 (763)
T ss_pred cCCchheEecchh-hhcc-cCcCccCHHHHHHHHHHHHHHHH-------------------hChHHHHHHHHHhcCC
Confidence 4467899999887 4444 58999999999999999999999 7999999999988865
No 10
>PF00384 Molybdopterin: Molybdopterin oxidoreductase; InterPro: IPR006656 This domain is found in a number of molybdopterin-containing oxidoreductases, tungsten formylmethanofuran dehydrogenase subunit d (FwdD) and molybdenum formylmethanofuran dehydrogenase subunit (FmdD); where a single domain constitutes almost the entire subunit. The formylmethanofuran dehydrogenase catalyses the first step in methane formation from CO2 in methanogenic archaea and has a molybdopterin dinucleotide cofactor []. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1TI2_G 1VLE_M 1VLD_U 1VLF_O 1TI4_I 1TI6_E 3DMR_A 4DMR_A 1H5N_C 1E5V_A ....
Probab=67.83 E-value=6.5 Score=31.68 Aligned_cols=35 Identities=31% Similarity=0.325 Sum_probs=25.1
Q ss_pred hcCCccccccc-CCccccCCCCCHHHHHHHHHHHHHHHH
Q 033695 59 LKKPVTKVNFE-TGLCEPCGQGTNDEALIRLAKDLSKEK 96 (113)
Q Consensus 59 L~~~v~~vn~~-tg~~e~~~~~tN~e~L~~fA~~L~~Er 96 (113)
|.+|..|+-.. .|+|++| +-+|+|+.+|+.|.+-+
T Consensus 2 l~~Pl~R~g~rg~~~~~~i---sWdeAl~~ia~~l~~~~ 37 (432)
T PF00384_consen 2 LKYPLKRVGERGDGKFVRI---SWDEALDEIAEKLKEII 37 (432)
T ss_dssp --S-EEEHCSTTSSSEEE-----HHHHHHHHHHHHHHHH
T ss_pred CCcceEccccCCCCCEEEc---cHHHHHHHhhhhccccc
Confidence 34566776666 7999999 99999999999998843
No 11
>cd02766 MopB_3 The MopB_3 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=63.54 E-value=9.3 Score=32.44 Aligned_cols=36 Identities=33% Similarity=0.368 Sum_probs=30.1
Q ss_pred hcCCcccccccCCccccCCCCCHHHHHHHHHHHHHHHHh
Q 033695 59 LKKPVTKVNFETGLCEPCGQGTNDEALIRLAKDLSKEKR 97 (113)
Q Consensus 59 L~~~v~~vn~~tg~~e~~~~~tN~e~L~~fA~~L~~Erk 97 (113)
|.+|..|++-.+|+|++| +.+|+|+.+|+.|.+-+.
T Consensus 56 l~~Pl~R~g~rgg~~~~i---sWdeAl~~ia~~l~~i~~ 91 (501)
T cd02766 56 LLTPLKRVGRKGGQWERI---SWDEALDTIAAKLKEIKA 91 (501)
T ss_pred hccceeecCCCCCceEEe---cHHHHHHHHHHHHHHHHH
Confidence 456888887666899999 999999999999987664
No 12
>cd02751 MopB_DMSOR-like The MopB_DMSOR-like CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO. Also included in this group is the pyrogallol-phloroglucinol transhydroxylase from Pelobacter acidigallici. Members of the MopB_DMSOR-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=54.60 E-value=15 Score=31.83 Aligned_cols=36 Identities=28% Similarity=0.375 Sum_probs=29.9
Q ss_pred hcCCccccccc-----------CCccccCCCCCHHHHHHHHHHHHHHHHh
Q 033695 59 LKKPVTKVNFE-----------TGLCEPCGQGTNDEALIRLAKDLSKEKR 97 (113)
Q Consensus 59 L~~~v~~vn~~-----------tg~~e~~~~~tN~e~L~~fA~~L~~Erk 97 (113)
|++|..|++.. .|+|++| +-+|+|+.+|+.|.+-+.
T Consensus 48 l~~Pl~R~g~rg~~~~~~~~~g~g~~~~i---SWDEAl~~iA~kl~~i~~ 94 (609)
T cd02751 48 IKYPMKRVGWLGNGPGSRELRGEGEFVRI---SWDEALDLVASELKRIRE 94 (609)
T ss_pred hcCCeeeccccccCCcccccCCCCCEEEe---cHHHHHHHHHHHHHHHHH
Confidence 56788888654 5899999 999999999999987554
No 13
>cd02770 MopB_DmsA-EC This CD (MopB_DmsA-EC) includes the DmsA enzyme of the dmsABC operon encoding the anaerobic dimethylsulfoxide reductase (DMSOR) of Escherichia coli and other related DMSOR-like enzymes. Unlike other DMSOR-like enzymes, this group has a predicted N-terminal iron-sulfur [4Fe-4S] cluster binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=51.09 E-value=19 Score=31.36 Aligned_cols=36 Identities=31% Similarity=0.341 Sum_probs=30.3
Q ss_pred hcCCccccccc-CCccccCCCCCHHHHHHHHHHHHHHHHh
Q 033695 59 LKKPVTKVNFE-TGLCEPCGQGTNDEALIRLAKDLSKEKR 97 (113)
Q Consensus 59 L~~~v~~vn~~-tg~~e~~~~~tN~e~L~~fA~~L~~Erk 97 (113)
|..|.-|++.. .|+|++| +-+|+|+.+|++|.+-++
T Consensus 60 l~~Pl~R~g~rG~g~~~~i---sWDeAl~~ia~kl~~i~~ 96 (617)
T cd02770 60 LKYPMKRVGKRGEGKFVRI---SWDEALDTIASELKRIIE 96 (617)
T ss_pred hcCCceecCcCCCCCeEEe---cHHHHHHHHHHHHHHHHH
Confidence 56788888764 4899999 999999999999987655
No 14
>cd02750 MopB_Nitrate-R-NarG-like Respiratory nitrate reductase A (NarGHI), alpha chain (NarG) and related proteins. Under anaerobic conditions in the presence of nitrate, E. coli synthesizes the cytoplasmic membrane-bound quinol-nitrate oxidoreductase (NarGHI), which reduces nitrate to nitrite and forms part of a redox loop generating a proton-motive force. Found in prokaryotes and some archaea, NarGHI usually functions as a heterotrimer. The alpha chain contains the molybdenum cofactor-containing Mo-bisMGD catalytic subunit. Members of the MopB_Nitrate-R-NarG-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=49.16 E-value=23 Score=29.62 Aligned_cols=38 Identities=24% Similarity=0.284 Sum_probs=30.0
Q ss_pred HhhcCCccccccc-CCccccCCCCCHHHHHHHHHHHHHHHHh
Q 033695 57 RLLKKPVTKVNFE-TGLCEPCGQGTNDEALIRLAKDLSKEKR 97 (113)
Q Consensus 57 ~LL~~~v~~vn~~-tg~~e~~~~~tN~e~L~~fA~~L~~Erk 97 (113)
+=|.+|..|++.. .|+|+++ +-+|+|+.+|+.|.+-++
T Consensus 65 ~Rl~~Pl~R~g~rG~g~~~~i---sWdeAl~~ia~~l~~i~~ 103 (461)
T cd02750 65 DRVKYPLKRVGARGEGKWKRI---SWDEALELIADAIIDTIK 103 (461)
T ss_pred hhhccceeeccCCCCCceEEe---cHHHHHHHHHHHHHHHHH
Confidence 3356788887642 5889999 999999999999986554
No 15
>cd02762 MopB_1 The MopB_1 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=47.47 E-value=24 Score=30.14 Aligned_cols=33 Identities=27% Similarity=0.377 Sum_probs=27.0
Q ss_pred hcCCcccccccCCccccCCCCCHHHHHHHHHHHHHHHHh
Q 033695 59 LKKPVTKVNFETGLCEPCGQGTNDEALIRLAKDLSKEKR 97 (113)
Q Consensus 59 L~~~v~~vn~~tg~~e~~~~~tN~e~L~~fA~~L~~Erk 97 (113)
|.+|.-|++ |+|+++ +-+|+|+.+|++|.+-++
T Consensus 55 l~~Pl~R~~---g~~~~i---sWdeAl~~ia~kl~~i~~ 87 (539)
T cd02762 55 LRTPMRRRG---GSFEEI---DWDEAFDEIAERLRAIRA 87 (539)
T ss_pred ccCCcEecC---CceeEe---CHHHHHHHHHHHHHHHHH
Confidence 456777765 899999 999999999999976544
No 16
>PF02676 TYW3: Methyltransferase TYW3; InterPro: IPR003827 The methyltransferase TYW3 (tRNA-yW- synthesising protein 3) has been identified in yeast to be involved in wybutosine (yW) biosynthesis []. yW is a complexly modified guanosine residue that contains a tricyclic base and is found at the 3'-position adjacent the anticodon of phenylalanine tRNA. TYW3 is an N-4 methylase that methylates yW-86 to yield yW-72 in an Ado-Met-dependent manner [].; PDB: 1TLJ_A 2DVK_A 2IT3_B 2IT2_A 2DRV_A 2QG3_B.
Probab=46.68 E-value=37 Score=26.13 Aligned_cols=34 Identities=29% Similarity=0.406 Sum_probs=29.7
Q ss_pred hccHHHHHHHHHHHHHhhcCCcccccccCCccccCCCCCHHHHHHHHHHHHHH
Q 033695 42 VATKKNLESLVGIGERLLKKPVTKVNFETGLCEPCGQGTNDEALIRLAKDLSK 94 (113)
Q Consensus 42 ~At~~Nl~~L~~ig~~LL~~~v~~vn~~tg~~e~~~~~tN~e~L~~fA~~L~~ 94 (113)
-.+++-|..|+.+|.+.+. .|.++|.+|-+.|..
T Consensus 169 lV~~~yL~~Lv~~aN~kl~-------------------~n~~rl~rl~~~l~~ 202 (205)
T PF02676_consen 169 LVSEEYLRFLVDIANEKLE-------------------ENKKRLERLYEALEE 202 (205)
T ss_dssp SS-HHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHH
Confidence 4689999999999999999 799999999988764
No 17
>TIGR02166 dmsA_ynfE anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family. Members of this family include known and probable dimethyl sulfoxide reductase (DMSO reductase) A chains. In E. coli, dmsA encodes the canonical anaerobic DMSO reductase A chain. The paralog ynfE, as part of ynfFGH expressed from a multicopy plasmid, could complement a dmsABC deletion, suggesting a similar function and some overlap in specificity, although YnfE could not substitute for DmsA in a mixed complex.
Probab=45.79 E-value=26 Score=31.34 Aligned_cols=36 Identities=31% Similarity=0.342 Sum_probs=29.9
Q ss_pred hcCCccccccc-CCccccCCCCCHHHHHHHHHHHHHHHHh
Q 033695 59 LKKPVTKVNFE-TGLCEPCGQGTNDEALIRLAKDLSKEKR 97 (113)
Q Consensus 59 L~~~v~~vn~~-tg~~e~~~~~tN~e~L~~fA~~L~~Erk 97 (113)
|++|.-|+... .|+|++| +-+|+|+.+|+.|.+-++
T Consensus 105 l~~Pl~R~g~rG~g~~~~i---SWdeAl~~ia~kl~~i~~ 141 (797)
T TIGR02166 105 LKYPMKRVGKRGEGKFERI---SWDEATDTIADNLKRIIE 141 (797)
T ss_pred hccCeeeccCCCCCCeEEe---cHHHHHHHHHHHHHHHHH
Confidence 56788888653 4799999 999999999999987665
No 18
>cd02757 MopB_Arsenate-R This CD includes the respiratory arsenate reductase, As(V), catalytic subunit (ArrA) and other related proteins. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=44.82 E-value=28 Score=29.80 Aligned_cols=37 Identities=22% Similarity=0.258 Sum_probs=29.9
Q ss_pred hhcCCccccccc-----CCccccCCCCCHHHHHHHHHHHHHHHHh
Q 033695 58 LLKKPVTKVNFE-----TGLCEPCGQGTNDEALIRLAKDLSKEKR 97 (113)
Q Consensus 58 LL~~~v~~vn~~-----tg~~e~~~~~tN~e~L~~fA~~L~~Erk 97 (113)
=|..|..|++.. .|+|++| +-+|+|+.+|+.|.+-++
T Consensus 56 Ri~~Pl~R~~~rg~~~~~g~~~~i---sWdeAl~~ia~~l~~~~~ 97 (523)
T cd02757 56 RILYPMKRTNPRKGRDVDPKFVPI---SWDEALDTIADKIRALRK 97 (523)
T ss_pred ccccCeeecCCCCCCCCCCCeeEe---cHHHHHHHHHHHHHHHHH
Confidence 355688888764 5889999 999999999999886554
No 19
>cd02763 MopB_2 The MopB_2 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=44.60 E-value=28 Score=31.39 Aligned_cols=36 Identities=25% Similarity=0.298 Sum_probs=29.5
Q ss_pred hcCCccccccc-CCccccCCCCCHHHHHHHHHHHHHHHHh
Q 033695 59 LKKPVTKVNFE-TGLCEPCGQGTNDEALIRLAKDLSKEKR 97 (113)
Q Consensus 59 L~~~v~~vn~~-tg~~e~~~~~tN~e~L~~fA~~L~~Erk 97 (113)
|.+|..|+... .|+|++| +-+|+|+.+|++|.+-|+
T Consensus 55 L~~PL~R~g~RG~g~f~~I---SWDEAld~IA~kL~~i~~ 91 (679)
T cd02763 55 LTKPLLRKGPRGSGQFEEI---EWEEAFSIATKRLKAARA 91 (679)
T ss_pred hcCCEEeccCCCCCceEEe---CHHHHHHHHHHHHHHHHH
Confidence 56688887654 3899999 999999999999988654
No 20
>cd02759 MopB_Acetylene-hydratase The MopB_Acetylene-hydratase CD contains acetylene hydratase (Ahy) and other related proteins. The acetylene hydratase of Pelobacter acetylenicus is a tungsten iron-sulfur protein involved in the fermentation of acetylene to ethanol and acetate. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=41.68 E-value=34 Score=28.67 Aligned_cols=36 Identities=31% Similarity=0.311 Sum_probs=28.8
Q ss_pred hcCCccccccc-CCccccCCCCCHHHHHHHHHHHHHHHHh
Q 033695 59 LKKPVTKVNFE-TGLCEPCGQGTNDEALIRLAKDLSKEKR 97 (113)
Q Consensus 59 L~~~v~~vn~~-tg~~e~~~~~tN~e~L~~fA~~L~~Erk 97 (113)
|..|..|++.. .|+|+++ +.+|+|+.+|+.|.+-++
T Consensus 55 l~~Pl~R~g~rG~g~~~~i---sWdeAl~~ia~~l~~~~~ 91 (477)
T cd02759 55 LLYPLKRVGERGENKWERI---SWDEALDEIAEKLAEIKA 91 (477)
T ss_pred hccCceecCCCCCCcEEEe---cHHHHHHHHHHHHHHHHH
Confidence 45687777654 4789999 999999999999887554
No 21
>cd02772 MopB_NDH-1_NuoG2 MopB_NDH-1_NuoG2: The second domain of the NuoG subunit of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1), found in beta- and gammaproteobacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evidence remains of a molybdopterin binding site, this protein domain belongs to t
Probab=41.34 E-value=32 Score=28.00 Aligned_cols=32 Identities=28% Similarity=0.300 Sum_probs=25.4
Q ss_pred cCCcccccccCCccccCCCCCHHHHHHHHHHHHHHHHh
Q 033695 60 KKPVTKVNFETGLCEPCGQGTNDEALIRLAKDLSKEKR 97 (113)
Q Consensus 60 ~~~v~~vn~~tg~~e~~~~~tN~e~L~~fA~~L~~Erk 97 (113)
.+|.-|. .|+|+++ +.+|+|+.+|++|..-++
T Consensus 56 ~~Pm~R~---~g~~~~i---sWdeAl~~ia~~l~~i~~ 87 (414)
T cd02772 56 TKPMIKK---DGQWQEV---DWETALEYVAEGLSAIIK 87 (414)
T ss_pred CCCeEec---CCceEEe---cHHHHHHHHHHHHHHHHH
Confidence 4455554 4889999 999999999999987665
No 22
>cd02769 MopB_DMSOR-BSOR-TMAOR The MopB_DMSOR-BSOR-TMAOR CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR always catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=41.09 E-value=35 Score=29.74 Aligned_cols=36 Identities=22% Similarity=0.247 Sum_probs=29.5
Q ss_pred hcCCccccc------------ccCCccccCCCCCHHHHHHHHHHHHHHHHh
Q 033695 59 LKKPVTKVN------------FETGLCEPCGQGTNDEALIRLAKDLSKEKR 97 (113)
Q Consensus 59 L~~~v~~vn------------~~tg~~e~~~~~tN~e~L~~fA~~L~~Erk 97 (113)
|..|..|++ -..|+|++| +-+|+|+.+|++|.+-++
T Consensus 47 l~~PlkR~g~~~~~~~~~~g~rG~g~~~~I---SWdEAld~IA~kl~~i~~ 94 (609)
T cd02769 47 IKYPMVRRGWLEKGPGSDRSLRGKEEFVRV---SWDEALDLVAAELKRVRK 94 (609)
T ss_pred ccCCceechhhhcCCCCCcccCCCCCeEEe---cHHHHHHHHHHHHHHHHH
Confidence 566888885 134889999 999999999999987665
No 23
>PRK14990 anaerobic dimethyl sulfoxide reductase subunit A; Provisional
Probab=40.97 E-value=34 Score=30.81 Aligned_cols=37 Identities=24% Similarity=0.302 Sum_probs=30.3
Q ss_pred hhcCCccccccc-CCccccCCCCCHHHHHHHHHHHHHHHHh
Q 033695 58 LLKKPVTKVNFE-TGLCEPCGQGTNDEALIRLAKDLSKEKR 97 (113)
Q Consensus 58 LL~~~v~~vn~~-tg~~e~~~~~tN~e~L~~fA~~L~~Erk 97 (113)
=|+.|..|++.. .|+|++| +-+|+|+.+|++|.+-++
T Consensus 119 Rl~~Pl~R~g~rG~g~~~~i---SWdEAl~~Ia~kl~~i~~ 156 (814)
T PRK14990 119 RLKYPMKRVGARGEGKFERI---SWEEAYDIIATNMQRLIK 156 (814)
T ss_pred hhCCCeEecccCCCCCeEEe---CHHHHHHHHHHHHHHHHH
Confidence 356788888764 5899999 999999999999986554
No 24
>cd02755 MopB_Thiosulfate-R-like The MopB_Thiosulfate-R-like CD contains thiosulfate-, sulfur-, and polysulfide-reductases, and other related proteins. Thiosulfate reductase catalyzes the cleavage of sulfur-sulfur bonds in thiosulfate. Polysulfide reductase is a membrane-bound enzyme that catalyzes the reduction of polysulfide using either hydrogen or formate as the electron donor. Members of the MopB_Thiosulfate-R-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=40.56 E-value=35 Score=28.43 Aligned_cols=36 Identities=36% Similarity=0.437 Sum_probs=29.1
Q ss_pred hcCCccccccc-CCccccCCCCCHHHHHHHHHHHHHHHHh
Q 033695 59 LKKPVTKVNFE-TGLCEPCGQGTNDEALIRLAKDLSKEKR 97 (113)
Q Consensus 59 L~~~v~~vn~~-tg~~e~~~~~tN~e~L~~fA~~L~~Erk 97 (113)
|.+|..|++.. .|+|++| +-+|+|+.+|+.|.+-+.
T Consensus 56 l~~Pl~R~g~rG~g~~~~i---SWdeAl~~ia~~l~~~~~ 92 (454)
T cd02755 56 LKKPLIRVGERGEGKFREA---SWDEALQYIASKLKEIKE 92 (454)
T ss_pred hcCCeeecCCCCCCeEEEe---CHHHHHHHHHHHHHHHHH
Confidence 56677777654 4789999 999999999999987654
No 25
>PF04472 DUF552: Protein of unknown function (DUF552); InterPro: IPR007561 This entry represents a cell division protein, designated SepF, which is conserved in Gram-positive bacteria. SepF accumulates at the cell division site in an FtsZ-dependent manner and is required for proper septum formation []. Mutants are viable but the formation of the septum is much slower and occurs with a very abnormal morphology. This entry also includes archaeal related proteins of unknown function.; GO: 0000917 barrier septum formation; PDB: 3P04_A.
Probab=40.54 E-value=30 Score=21.96 Aligned_cols=42 Identities=29% Similarity=0.298 Sum_probs=27.6
Q ss_pred cHHHHHHHHHHHHHhhcCCcccccccCCccccCCCCCHHHHHHHHHHHHHH
Q 033695 44 TKKNLESLVGIGERLLKKPVTKVNFETGLCEPCGQGTNDEALIRLAKDLSK 94 (113)
Q Consensus 44 t~~Nl~~L~~ig~~LL~~~v~~vn~~tg~~e~~~~~tN~e~L~~fA~~L~~ 94 (113)
+|...+...++++.|.+.++.-+|++. -..+...|+.+.|+-
T Consensus 5 ~p~~~~D~~~i~~~l~~g~~Vivnl~~---------l~~~~~~Ri~Dfl~G 46 (73)
T PF04472_consen 5 EPKSFEDAREIVDALREGKIVIVNLEN---------LDDEEAQRILDFLSG 46 (73)
T ss_dssp E-SSGGGHHHHHHHHHTT--EEEE-TT---------S-HHHHHHHHHHHHH
T ss_pred eeCCHHHHHHHHHHHHcCCEEEEECCC---------CCHHHHHHHHHHHhc
Confidence 455667788899999999988999975 344556777777653
No 26
>PF01434 Peptidase_M41: Peptidase family M41 This is family M41 in the peptidase classification. ; InterPro: IPR000642 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The peptidase M41 family belong to a larger family of zinc metalloproteases. This family includes the cell division protein FtsH, and the yeast mitochondrial respiratory chain complexes assembly protein, which is a putative ATP-dependent protease required for assembly of the mitochondrial respiratory chain and ATPase complexes. FtsH is an integral membrane protein, which seems to act as an ATP-dependent zinc metallopeptidase that binds one zinc ion.; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0006508 proteolysis; PDB: 4EIW_C 2DHR_E 1IY1_A 1IY2_A 1IY0_A 1IXZ_A 2CE7_F 2CEA_F 3KDS_E 2QZ4_A ....
Probab=39.45 E-value=50 Score=24.98 Aligned_cols=39 Identities=31% Similarity=0.371 Sum_probs=31.0
Q ss_pred hhhhccHHHHHHHHHHHHHhhcCCcccccccCCccccCCCCCHHHHHHHHHHHHHHHH
Q 033695 39 SVDVATKKNLESLVGIGERLLKKPVTKVNFETGLCEPCGQGTNDEALIRLAKDLSKEK 96 (113)
Q Consensus 39 ~mD~At~~Nl~~L~~ig~~LL~~~v~~vn~~tg~~e~~~~~tN~e~L~~fA~~L~~Er 96 (113)
.+|..-..=|+.....+.++|+ .|.+.|+.+|+.|....
T Consensus 165 ~i~~ev~~lL~~a~~~a~~iL~-------------------~~r~~l~~la~~Lle~~ 203 (213)
T PF01434_consen 165 LIDREVRKLLEEAYARAKEILE-------------------ENREALEALAEALLEKE 203 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------------------HTHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------------------HhHHHHHHHHHHHHHhC
Confidence 3455555566677789999999 79999999999998754
No 27
>PRK13532 nitrate reductase catalytic subunit; Provisional
Probab=39.03 E-value=37 Score=30.80 Aligned_cols=36 Identities=22% Similarity=0.422 Sum_probs=28.8
Q ss_pred hhcCCccccccc-----CCccccCCCCCHHHHHHHHHHHHHHHHh
Q 033695 58 LLKKPVTKVNFE-----TGLCEPCGQGTNDEALIRLAKDLSKEKR 97 (113)
Q Consensus 58 LL~~~v~~vn~~-----tg~~e~~~~~tN~e~L~~fA~~L~~Erk 97 (113)
=|..|..|+. . .|+|++| +-+|+|+.+|+.|.+-++
T Consensus 97 Rl~~Pl~R~~-rG~~~~~g~~~~i---sWdeAl~~iA~~l~~i~~ 137 (830)
T PRK13532 97 RLTQPLLRMK-DGKYDKEGEFTPV---SWDQAFDVMAEKFKKALK 137 (830)
T ss_pred cccCCEEecC-CCCcccCCCeEEe---cHHHHHHHHHHHHHHHHH
Confidence 3566887876 3 4899999 999999999999977544
No 28
>PRK15488 thiosulfate reductase PhsA; Provisional
Probab=37.94 E-value=42 Score=29.96 Aligned_cols=37 Identities=27% Similarity=0.337 Sum_probs=29.8
Q ss_pred hcCCccccccc-CCccccCCCCCHHHHHHHHHHHHHHHHhh
Q 033695 59 LKKPVTKVNFE-TGLCEPCGQGTNDEALIRLAKDLSKEKRI 98 (113)
Q Consensus 59 L~~~v~~vn~~-tg~~e~~~~~tN~e~L~~fA~~L~~Erk~ 98 (113)
|.+|.-|++.. .|+|++| +-+|+|+.+|+.|.+-++.
T Consensus 99 l~~Pl~R~~~rg~g~~~~i---SWdEAl~~ia~~l~~i~~~ 136 (759)
T PRK15488 99 IVKPLKRVGERGEGKWQEI---SWDEAYQEIAAKLNAIKQQ 136 (759)
T ss_pred hccceeecCCCCCCCeEEe---CHHHHHHHHHHHHHHHHHH
Confidence 56688887643 5789999 9999999999999876653
No 29
>cd02765 MopB_4 The MopB_4 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=37.70 E-value=42 Score=29.00 Aligned_cols=36 Identities=42% Similarity=0.481 Sum_probs=29.2
Q ss_pred hcCCcccccc-cCCccccCCCCCHHHHHHHHHHHHHHHHh
Q 033695 59 LKKPVTKVNF-ETGLCEPCGQGTNDEALIRLAKDLSKEKR 97 (113)
Q Consensus 59 L~~~v~~vn~-~tg~~e~~~~~tN~e~L~~fA~~L~~Erk 97 (113)
|..|..|++. ..|+|++| +-+|+|+.+|++|.+-++
T Consensus 56 l~~Pl~R~g~rG~g~~~~i---SWdEAl~~ia~kl~~~~~ 92 (567)
T cd02765 56 LKYPMKRVGERGEGKFERI---TWDEALDTIADKLTEAKR 92 (567)
T ss_pred hcCCeeecCCCCCCcEEEe---cHHHHHHHHHHHHHHHHH
Confidence 5668888765 35899999 999999999999987554
No 30
>TIGR01706 NAPA periplasmic nitrate reductase, large subunit. The enzymes from Alicagenes eutrophus and Paracoccus pantotrophus have been characterized. In E. coli (as well as other organisms) this gene is part of a large nitrate reduction operon (napFDAGHBC).
Probab=37.16 E-value=43 Score=30.48 Aligned_cols=36 Identities=17% Similarity=0.386 Sum_probs=29.0
Q ss_pred hcCCcccccc----cCCccccCCCCCHHHHHHHHHHHHHHHHh
Q 033695 59 LKKPVTKVNF----ETGLCEPCGQGTNDEALIRLAKDLSKEKR 97 (113)
Q Consensus 59 L~~~v~~vn~----~tg~~e~~~~~tN~e~L~~fA~~L~~Erk 97 (113)
|..|..|+.. ..|+|++| +-+|+|+.+|+.|.+-++
T Consensus 98 l~~Pl~R~~~g~~~g~g~~~~i---SWDeAl~~iA~kl~~i~~ 137 (830)
T TIGR01706 98 LTQPLLRMKDGKYDKDGEFTPV---SWDQAFDEMEEQFKRALK 137 (830)
T ss_pred hcCCEEecCCCCcccCCCeeEc---CHHHHHHHHHHHHHHHHH
Confidence 5668888764 24899999 999999999999986544
No 31
>PRK04235 hypothetical protein; Provisional
Probab=36.14 E-value=74 Score=24.45 Aligned_cols=35 Identities=29% Similarity=0.366 Sum_probs=31.1
Q ss_pred hccHHHHHHHHHHHHHhhcCCcccccccCCccccCCCCCHHHHHHHHHHHHHHH
Q 033695 42 VATKKNLESLVGIGERLLKKPVTKVNFETGLCEPCGQGTNDEALIRLAKDLSKE 95 (113)
Q Consensus 42 ~At~~Nl~~L~~ig~~LL~~~v~~vn~~tg~~e~~~~~tN~e~L~~fA~~L~~E 95 (113)
-.+++=|+-|+.+|.+.+. .|.++|.+|-..|...
T Consensus 159 lV~~eyl~~Lv~~aN~kl~-------------------~n~~rl~rl~~~l~~~ 193 (196)
T PRK04235 159 VVDEEYLKFLVEVANEKLL-------------------RGKERLNRLEEELEEL 193 (196)
T ss_pred ccCHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHH
Confidence 4689999999999999999 7999999998887654
No 32
>cd02760 MopB_Phenylacetyl-CoA-OR The MopB_Phenylacetyl-CoA-OR CD contains the phenylacetyl-CoA:acceptor oxidoreductase, large subunit (PadB2), and other related proteins. The phenylacetyl-CoA:acceptor oxidoreductase has been characterized as a membrane-bound molybdenum-iron-sulfur enzyme involved in anaerobic metabolism of phenylalanine in the denitrifying bacterium Thauera aromatica. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=35.03 E-value=49 Score=30.14 Aligned_cols=37 Identities=24% Similarity=0.260 Sum_probs=30.2
Q ss_pred hcCCccccccc-----CCccccCCCCCHHHHHHHHHHHHHHHHhh
Q 033695 59 LKKPVTKVNFE-----TGLCEPCGQGTNDEALIRLAKDLSKEKRI 98 (113)
Q Consensus 59 L~~~v~~vn~~-----tg~~e~~~~~tN~e~L~~fA~~L~~Erk~ 98 (113)
|.+|.-|++.. .|+|++| +-+|+|+.+|+.|.+-++.
T Consensus 59 L~~PLkR~g~k~G~~~dg~~~~I---SWDEAld~IA~kL~~i~~~ 100 (760)
T cd02760 59 VLQPMKRTNPKKGRNEDPGFVPI---SWDEALDLVAAKLRRVREK 100 (760)
T ss_pred hcCCeeccCCCCCCcCCCCeeEe---CHHHHHHHHHHHHHHHHHc
Confidence 56788888753 3789999 9999999999999876543
No 33
>cd02764 MopB_PHLH The MopB_PHLH CD includes a group of related uncharacterized putative hydrogenase-like homologs (PHLH) of molybdopterin binding (MopB) proteins. This CD is of the PHLH region homologous to the catalytic molybdopterin-binding subunit of MopB homologs.
Probab=34.38 E-value=35 Score=29.04 Aligned_cols=34 Identities=15% Similarity=0.137 Sum_probs=26.8
Q ss_pred hcCCcccccccCCccccCCCCCHHHHHHHHHHHHHHHHh
Q 033695 59 LKKPVTKVNFETGLCEPCGQGTNDEALIRLAKDLSKEKR 97 (113)
Q Consensus 59 L~~~v~~vn~~tg~~e~~~~~tN~e~L~~fA~~L~~Erk 97 (113)
|.+|.-|+. .|+|++| +-+|+|+.+|+.|.+-++
T Consensus 100 l~~Pl~R~g--~g~~~~i---SWdeAld~ia~~l~~i~~ 133 (524)
T cd02764 100 AQGPLRRGI--DGAYVAS---DWADFDAKVAEQLKAVKD 133 (524)
T ss_pred hhhhHhcCC--CCCeeeC---CHHHHHHHHHHHHHHhhc
Confidence 344665553 4899999 999999999999988665
No 34
>TIGR00509 bisC_fam molybdopterin guanine dinucleotide-containing S/N-oxide reductases. This enzyme family shares sequence similarity and a requirement for a molydenum cofactor as the only prosthetic group. The form of the cofactor is a single molybdenum atom coordinated by two molybdopterin guanine dinucleotide molecules. Members of the family include biotin sulfoxide reductase, dimethylsulfoxide reductase, and trimethylamine-N-oxide reductase, although a single member may show all those activities and related activities; it may not be possible to resolve the primary function for members of this family by sequence comparison alone. A number of similar molybdoproteins in which the N-terminal region contains a CXXXC motif and may bind an iron-sulfur cluster are excluded from this set, including formate dehydrogenases and nitrate reductases. Also excluded is the A chain of a heteromeric, anaerobic DMSO reductase, which also contains the CXXXC motif.
Probab=34.18 E-value=50 Score=29.63 Aligned_cols=37 Identities=24% Similarity=0.341 Sum_probs=29.8
Q ss_pred hcCCcccccc------------cCCccccCCCCCHHHHHHHHHHHHHHHHhh
Q 033695 59 LKKPVTKVNF------------ETGLCEPCGQGTNDEALIRLAKDLSKEKRI 98 (113)
Q Consensus 59 L~~~v~~vn~------------~tg~~e~~~~~tN~e~L~~fA~~L~~Erk~ 98 (113)
|.+|.-|++. ..|+|++| +-+|+|+.+|++|.+-++.
T Consensus 45 l~~PL~R~g~~~~~~~~~~~~rG~g~f~~i---SWDEAl~~IA~kl~~i~~~ 93 (770)
T TIGR00509 45 IKYPMVRKGFLENGVKSDRSGRGREEFVRV---SWDEALDLVAEELKRVRKT 93 (770)
T ss_pred ccCCeeecchhhccCCCccccCCCCCeEEe---cHHHHHHHHHHHHHHHHHh
Confidence 5678888861 13789999 9999999999999887664
No 35
>PF07240 Turandot: Stress-inducible humoral factor Turandot; InterPro: IPR010825 This family consists of several Drosophila species specific Turandot proteins. The Turandot A (TotA) gene encodes a humoral factor, which is secreted from the fat body and accumulates in the body fluids. TotA is strongly induced upon bacterial challenge, as well as by other types of stress such as high temperature, mechanical pressure, dehydration, UV irradiation, and oxidative agents. It is also upregulated during metamorphosis and at high age. Flies that overexpress TotA show prolonged survival and retain normal activity at otherwise lethal temperatures. Although TotA is only induced by severe stress, it responds to a much wider range of stimuli than heat shock genes such as hsp70 or immune genes such as Cecropin A1 [].
Probab=34.06 E-value=97 Score=21.00 Aligned_cols=22 Identities=41% Similarity=0.457 Sum_probs=19.1
Q ss_pred hhhhccHH-HHHHHHHHHHHhhc
Q 033695 39 SVDVATKK-NLESLVGIGERLLK 60 (113)
Q Consensus 39 ~mD~At~~-Nl~~L~~ig~~LL~ 60 (113)
++|++|+. |+..|+.+=+++-.
T Consensus 2 svD~~tK~rni~eLi~fY~ky~~ 24 (85)
T PF07240_consen 2 SVDDATKIRNIQELIAFYEKYSP 24 (85)
T ss_pred cchHHHHHhhHHHHHHHHHHcCc
Confidence 67888888 99999999988876
No 36
>cd02773 MopB_Res-Cmplx1_Nad11 MopB_Res_Cmplx1_Nad11: The second domain of the Nad11/75-kDa subunit of the NADH-quinone oxidoreductase/respiratory complex I/NADH dehydrogenase-1(NDH-1) of eukaryotes and the Nqo3/G subunit of alphaproteobacteria NDH-1. The NADH-quinone oxidoreductase is the first energy-transducting complex in the respiratory chains of many prokaryotes and eukaryotes. Mitochondrial complex I and its bacterial counterpart, NDH-1, function as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The nad11 gene codes for the largest (75 kDa) subunit of the mitochondrial NADH:ubiquinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. In Paracoccus denitrificans, this subunit is encoded by the nqo3 gene, and is part of the 14 distinct subunits constituting the 'minimal' functional enzyme. The Nad11/Nqo3 subunit is made
Probab=33.92 E-value=40 Score=27.16 Aligned_cols=32 Identities=38% Similarity=0.466 Sum_probs=24.5
Q ss_pred hhcCCcccccccCCccccCCCCCHHHHHHHHHHHHHHH
Q 033695 58 LLKKPVTKVNFETGLCEPCGQGTNDEALIRLAKDLSKE 95 (113)
Q Consensus 58 LL~~~v~~vn~~tg~~e~~~~~tN~e~L~~fA~~L~~E 95 (113)
=|.+|..|. .|+|+++ +.+|+|+.+|+.|.+-
T Consensus 53 Rl~~Plir~---~g~~~~i---sWdeAl~~ia~~l~~~ 84 (375)
T cd02773 53 RLDKPYIRK---NGKLKPA---TWEEALAAIAKALKGV 84 (375)
T ss_pred ccCCCcEee---CCcEeEc---CHHHHHHHHHHHHhhc
Confidence 345677775 4788888 9999999999988643
No 37
>cd02752 MopB_Formate-Dh-Na-like Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=33.73 E-value=49 Score=29.68 Aligned_cols=36 Identities=28% Similarity=0.375 Sum_probs=28.6
Q ss_pred hcCCcccccccCCccccCCCCCHHHHHHHHHHHHHHHHhh
Q 033695 59 LKKPVTKVNFETGLCEPCGQGTNDEALIRLAKDLSKEKRI 98 (113)
Q Consensus 59 L~~~v~~vn~~tg~~e~~~~~tN~e~L~~fA~~L~~Erk~ 98 (113)
|.+|..|.+ .+|+|+++ +-+|+|+.+|++|.+-|..
T Consensus 55 L~~Pl~R~~-g~g~~~~i---SWdeAld~iA~klk~i~~~ 90 (649)
T cd02752 55 LKYPMYRAP-GSGKWEEI---SWDEALDEIARKMKDIRDA 90 (649)
T ss_pred ccCCEEecC-CCCCEEEe---CHHHHHHHHHHHHHHHHHH
Confidence 455766654 45789999 9999999999999887754
No 38
>PRK15102 trimethylamine N-oxide reductase I catalytic subunit; Provisional
Probab=33.34 E-value=53 Score=29.77 Aligned_cols=37 Identities=16% Similarity=0.267 Sum_probs=29.1
Q ss_pred hcCCccccc-----------c-cCCccccCCCCCHHHHHHHHHHHHHHHHhh
Q 033695 59 LKKPVTKVN-----------F-ETGLCEPCGQGTNDEALIRLAKDLSKEKRI 98 (113)
Q Consensus 59 L~~~v~~vn-----------~-~tg~~e~~~~~tN~e~L~~fA~~L~~Erk~ 98 (113)
|..|.-|++ . ..|+|++| +-+|+|+.+|++|.+-++.
T Consensus 91 l~~PlkR~~~~~~~~~~~~g~RG~g~f~~I---SWDEAld~IA~kl~~i~~~ 139 (825)
T PRK15102 91 IRYPMVRLDWLRKRHKSDTSQRGDNRFVRV---SWDEALDLFYEELERVQKT 139 (825)
T ss_pred ccCCceechhhhccCCCCcccCCCCcEEEe---cHHHHHHHHHHHHHHHHHh
Confidence 456888873 1 25789999 9999999999999876654
No 39
>cd02771 MopB_NDH-1_NuoG2-N7 MopB_NDH-1_NuoG2-N7: The second domain of the NuoG subunit (with a [4Fe-4S] cluster, N7) of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1) found in various bacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Unique to this group, compared to the other prokaryotic and eukaryotic groups in this domain
Probab=32.75 E-value=49 Score=27.45 Aligned_cols=31 Identities=29% Similarity=0.354 Sum_probs=22.8
Q ss_pred cCCcccccccCCccccCCCCCHHHHHHHHHHHHHHHH
Q 033695 60 KKPVTKVNFETGLCEPCGQGTNDEALIRLAKDLSKEK 96 (113)
Q Consensus 60 ~~~v~~vn~~tg~~e~~~~~tN~e~L~~fA~~L~~Er 96 (113)
.+|..|+ .|+|+++ +-+|+|+.+|+.|.+-+
T Consensus 56 ~~Pl~R~---~g~~~~i---sWdeAl~~ia~~l~~~~ 86 (472)
T cd02771 56 TQPLIRR---GGTLVPV---SWNEALDVAAARLKEAK 86 (472)
T ss_pred CCCceec---CCceeEe---cHHHHHHHHHHHHHHhh
Confidence 4455554 3678888 88899998888887654
No 40
>cd00368 Molybdopterin-Binding Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and tungsten-containing enzymes, including formate dehydrogenase-H (Fdh-H) and -N (Fdh-N), several forms of nitrate reductase (Nap, Nas, NarG), dimethylsulfoxide reductase (DMSOR), thiosulfate reductase, formylmethanofuran dehydrogenase, and arsenite oxidase. Molybdenum is present in most of these enzymes in the form of molybdopterin, a modified pterin ring with a dithiolene side chain, which is responsible for ligating the Mo. In many bacterial and archaeal species, molybdopterin is in the form of a dinucleotide, with two molybdopterin dinucleotide units per molybdenum. These proteins can function as monomers, heterodimers, or heterotrimers, depending on the protein and organism. Also included in the MopB superfamily is
Probab=31.89 E-value=64 Score=25.37 Aligned_cols=35 Identities=34% Similarity=0.436 Sum_probs=26.2
Q ss_pred hcCCcccccccCCccccCCCCCHHHHHHHHHHHHHHHHh
Q 033695 59 LKKPVTKVNFETGLCEPCGQGTNDEALIRLAKDLSKEKR 97 (113)
Q Consensus 59 L~~~v~~vn~~tg~~e~~~~~tN~e~L~~fA~~L~~Erk 97 (113)
|.+|..|.+.. |+|+++ +-+++|+.+|+.|.+-++
T Consensus 55 l~~Pl~r~~~~-~~~~~i---sWdeAl~~ia~~l~~~~~ 89 (374)
T cd00368 55 LKYPLIRVGGR-GKFVPI---SWDEALDEIAEKLKEIRE 89 (374)
T ss_pred ccCCeEecCCC-CCeEEe---cHHHHHHHHHHHHHHHHH
Confidence 34566665544 688898 999999999999876543
No 41
>TIGR03479 DMSO_red_II_alp DMSO reductase family type II enzyme, molybdopterin subunit. This model represents the molybdopterin subunit, typically called the alpha subunit, of various proteins that also contain an iron-sulfur subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase, ethylbenzene dehydrogenase, and an archaeal respiratory nitrate reductase. This alpha subunit has a twin-arginine translocation (TAT) signal for Sec-independent translocation across the plasma membrane.
Probab=30.93 E-value=61 Score=29.94 Aligned_cols=37 Identities=27% Similarity=0.320 Sum_probs=29.8
Q ss_pred hcCCcccccc-cCCccccCCCCCHHHHHHHHHHHHHHHHhh
Q 033695 59 LKKPVTKVNF-ETGLCEPCGQGTNDEALIRLAKDLSKEKRI 98 (113)
Q Consensus 59 L~~~v~~vn~-~tg~~e~~~~~tN~e~L~~fA~~L~~Erk~ 98 (113)
|+.|.-|+.. ..|+|++| +-+|+|+.+|+.|.+-++.
T Consensus 121 l~~Pl~R~g~RG~G~~~~i---SWdEAld~IA~kl~~i~~~ 158 (912)
T TIGR03479 121 LKYPLKRVGERGEGKWKRI---SWDEALTEIADKIIDTFEA 158 (912)
T ss_pred ccCceeecCCCCCCceEEe---CHHHHHHHHHHHHHHHHHH
Confidence 5678888764 35899999 9999999999999875543
No 42
>cd02768 MopB_NADH-Q-OR-NuoG2 MopB_NADH-Q-OR-NuoG2: The NuoG/Nad11/75-kDa subunit (second domain) of the NADH-quinone oxidoreductase (NADH-Q-OR)/respiratory complex I/NADH dehydrogenase-1 (NDH-1). The NADH-Q-OR is the first energy-transducting complex in the respiratory chains of many prokaryotes and eukaryotes. Mitochondrial complex I and its bacterial counterpart, NDH-1, function as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The atomic structure of complex I is not known and the mechanisms of electron transfer and proton pumping are not established. The nad11 gene codes for the largest (75-kDa) subunit of the mitochondrial NADH:ubiquinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. In Escherichia coli, this subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the 'minimal' fun
Probab=29.35 E-value=54 Score=26.20 Aligned_cols=31 Identities=32% Similarity=0.413 Sum_probs=20.6
Q ss_pred cCCcccccccCCccccCCCCCHHHHHHHHHHHHHHHH
Q 033695 60 KKPVTKVNFETGLCEPCGQGTNDEALIRLAKDLSKEK 96 (113)
Q Consensus 60 ~~~v~~vn~~tg~~e~~~~~tN~e~L~~fA~~L~~Er 96 (113)
.+|..|+ .|+|+++ +.+|+|+.+|+.|.+-+
T Consensus 56 ~~Pl~r~---~~~~~~i---sWdeAl~~ia~~l~~~~ 86 (386)
T cd02768 56 TQPLIKK---GGKLVPV---SWEEALKTVAEGLKAVK 86 (386)
T ss_pred cCCeEec---CCceeEc---CHHHHHHHHHHHHHhcC
Confidence 3344443 3677777 88888888888776543
No 43
>TIGR01591 Fdh-alpha formate dehydrogenase, alpha subunit, archaeal-type. This model is well-defined, with only a single fragmentary sequence falling between trusted and noise. The alpha subunit of a version of nitrate reductase is closely related.
Probab=29.10 E-value=67 Score=27.98 Aligned_cols=33 Identities=24% Similarity=0.327 Sum_probs=25.7
Q ss_pred hcCCcccccccCCccccCCCCCHHHHHHHHHHHHHHHHh
Q 033695 59 LKKPVTKVNFETGLCEPCGQGTNDEALIRLAKDLSKEKR 97 (113)
Q Consensus 59 L~~~v~~vn~~tg~~e~~~~~tN~e~L~~fA~~L~~Erk 97 (113)
|..|..|++ |+|++| +-+|+|+.+|++|.+-++
T Consensus 54 l~~P~~R~~---g~~~~i---sWdeAl~~ia~~l~~~~~ 86 (671)
T TIGR01591 54 LTTPLIREG---DKFREV---SWDEAISYIAEKLKEIKE 86 (671)
T ss_pred ccCCeEcCC---CCEEEc---cHHHHHHHHHHHHHHHHH
Confidence 344665653 889999 999999999999986554
No 44
>TIGR02164 torA trimethylamine-N-oxide reductase TorA. This very narrowly defined family represents TorA, part of a family of related molybdoenzymes that include biotin sulfoxide reductases, dimethyl sulfoxide reductases, and at least two different subfamilies of trimethylamine-N-oxide reductases. A single enzyme from the larger family may have more than one activity. TorA typically is located in the periplasm, has a Tat (twin-arginine translocation)-dependent signal sequence, and is encoded in a torCAD operon.
Probab=28.84 E-value=72 Score=28.95 Aligned_cols=37 Identities=19% Similarity=0.311 Sum_probs=29.0
Q ss_pred hcCCcccccc------------cCCccccCCCCCHHHHHHHHHHHHHHHHhh
Q 033695 59 LKKPVTKVNF------------ETGLCEPCGQGTNDEALIRLAKDLSKEKRI 98 (113)
Q Consensus 59 L~~~v~~vn~------------~tg~~e~~~~~tN~e~L~~fA~~L~~Erk~ 98 (113)
|..|.-|++. ..|+|++| +-+|+|+.+|++|.+-++.
T Consensus 88 l~~PlkR~~~~~~~~~~~~g~RG~g~f~rI---SWDEAld~IA~kl~~i~~~ 136 (822)
T TIGR02164 88 VRYPMVRLDWLKKRHKSNTHQRGDNRFVRV---TWDEALDLFYEELERVQKQ 136 (822)
T ss_pred ccCCceecchhhccCCCCcccCCCCCEEEe---cHHHHHHHHHHHHHHHHHh
Confidence 4568888731 25789999 9999999999999876543
No 45
>cd02753 MopB_Formate-Dh-H Formate dehydrogenase H (Formate-Dh-H) catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. It is a component of the anaerobic formate hydrogen lyase complex. The E. coli formate dehydrogenase H (Fdh-H) is a monomer composed of a single polypeptide chain with a Mo active site region and a [4Fe-4S] center. Members of the MopB_Formate-Dh-H CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=27.91 E-value=68 Score=26.90 Aligned_cols=33 Identities=33% Similarity=0.380 Sum_probs=25.4
Q ss_pred hcCCcccccccCCccccCCCCCHHHHHHHHHHHHHHHHh
Q 033695 59 LKKPVTKVNFETGLCEPCGQGTNDEALIRLAKDLSKEKR 97 (113)
Q Consensus 59 L~~~v~~vn~~tg~~e~~~~~tN~e~L~~fA~~L~~Erk 97 (113)
|.+|.-|+ .|+|++| +-+|+|+.+|+.|..-++
T Consensus 55 l~~Pl~R~---~~~~~~i---sWdeAl~~ia~~l~~~~~ 87 (512)
T cd02753 55 LTKPLIRK---NGKFVEA---SWDEALSLVASRLKEIKD 87 (512)
T ss_pred cCCCEECC---CCCEEEe---cHHHHHHHHHHHHHHHHH
Confidence 44566665 3689999 999999999999876443
No 46
>PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=27.81 E-value=90 Score=25.69 Aligned_cols=47 Identities=15% Similarity=0.185 Sum_probs=31.7
Q ss_pred ccHHHHHHHHHHHHHhhcC-CcccccccCCccccCCCCCHHHHHHHHHHHHH
Q 033695 43 ATKKNLESLVGIGERLLKK-PVTKVNFETGLCEPCGQGTNDEALIRLAKDLS 93 (113)
Q Consensus 43 At~~Nl~~L~~ig~~LL~~-~v~~vn~~tg~~e~~~~~tN~e~L~~fA~~L~ 93 (113)
-++++++.|.++...+.-+ +....|...|.|++ ...+.+.+|++.|.
T Consensus 259 Dseeda~~La~llk~l~~~vnlI~~N~~~~~~~~----p~~~~i~~f~~~l~ 306 (336)
T PRK14470 259 VGEEDAAALGRLLAGIPVRLNPIAVNDATGRYRP----PDEDEWNAFRDALA 306 (336)
T ss_pred CCHHHHHHHHHHHhcCCCeEEEeccCCCCCCccC----CCHHHHHHHHHHHH
Confidence 4578888888888766332 23334444455544 57889999999995
No 47
>cd02767 MopB_ydeP The MopB_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=26.69 E-value=61 Score=28.46 Aligned_cols=32 Identities=22% Similarity=0.213 Sum_probs=22.7
Q ss_pred cCCcccccccCCccccCCCCCHHHHHHHHHHHHHHH
Q 033695 60 KKPVTKVNFETGLCEPCGQGTNDEALIRLAKDLSKE 95 (113)
Q Consensus 60 ~~~v~~vn~~tg~~e~~~~~tN~e~L~~fA~~L~~E 95 (113)
..|..|+ -.+|+|+|| +-+|+|+.+|+.|.+-
T Consensus 66 ~~Pm~R~-~G~g~~~~I---SWDEAl~~IA~kL~~~ 97 (574)
T cd02767 66 TYPMRYD-AGSDHYRPI---SWDEAFAEIAARLRAL 97 (574)
T ss_pred CCCEEec-CCCCCEEEe---cHHHHHHHHHHHHhhh
Confidence 3455554 245788888 8888888888887754
No 48
>cd02756 MopB_Arsenite-Ox Arsenite oxidase (Arsenite-Ox) oxidizes arsenite to the less toxic arsenate; it transfers the electrons obtained from the oxidation of arsenite towards the soluble periplasmic electron carriers cytochrome c and/or amicyanin. Arsenite oxidase is a heterodimeric enzyme containing a large and a small subunit. The large catalytic subunit harbors the molybdopterin cofactor and the [3Fe-4S] cluster; and the small subunit belongs to the structural class of the Rieske proteins. The small subunit is not included in this alignment. Members of MopB_Arsenite-Ox CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=25.07 E-value=86 Score=28.35 Aligned_cols=33 Identities=24% Similarity=0.322 Sum_probs=27.6
Q ss_pred hcCCcccccccCCccccCCCCCHHHHHHHHHHHHHHHHh
Q 033695 59 LKKPVTKVNFETGLCEPCGQGTNDEALIRLAKDLSKEKR 97 (113)
Q Consensus 59 L~~~v~~vn~~tg~~e~~~~~tN~e~L~~fA~~L~~Erk 97 (113)
|..|..|+ .|+|+++ +-+|+|+.+|+.|.+-++
T Consensus 118 L~~PLiR~---~g~~~~i---SWDeAld~iA~~lk~i~d 150 (676)
T cd02756 118 LTTPLVRR---GGQLQPT---TWDDAIDLVARVIKGILD 150 (676)
T ss_pred cCCceEcc---CCceeEc---cHHHHHHHHHHHHHHHHH
Confidence 67787776 4899999 999999999999877654
No 49
>PF08833 Axin_b-cat_bind: Axin beta-catenin binding domain; InterPro: IPR014936 Proteins in this entry are found on the scaffolding protein Axin which is a component of the beta-catenin destruction complex. It competes with the tumour suppressor adenomatous polyposis coli protein (APC) for binding to beta-catenin []. ; PDB: 1QZ7_B.
Probab=25.05 E-value=58 Score=19.69 Aligned_cols=17 Identities=18% Similarity=0.327 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHhhhcCC
Q 033695 5 SDMTDFHISTAFKALHS 21 (113)
Q Consensus 5 sDmVD~~ls~lf~~~~~ 21 (113)
-++.|.|++.+|++-++
T Consensus 5 qsILD~HvsRV~rtPg~ 21 (45)
T PF08833_consen 5 QSILDDHVSRVWRTPGC 21 (45)
T ss_dssp THHHHHHHHHH------
T ss_pred HHHHHHHHHHHhcCCCC
Confidence 36889999999977654
No 50
>TIGR02693 arsenite_ox_L arsenite oxidase, large subunit. This model represents the large subunit of an arsenite oxidase complex. The small subunit is a Rieske protein. Homologs to both large and small subunits that score in the gray zone between the set trusted and noise bit score cutoffs for the respective models are found in Aeropyrum pernix K1 and in Sulfolobus tokodaii str. 7. This enzyme acts in energy metabolim by arsenite oxidation, rather than detoxification by reduction of arsenate to arsenite prior to export.
Probab=23.66 E-value=88 Score=28.61 Aligned_cols=34 Identities=24% Similarity=0.216 Sum_probs=27.2
Q ss_pred hhcCCcccccccCCccccCCCCCHHHHHHHHHHHHHHHHh
Q 033695 58 LLKKPVTKVNFETGLCEPCGQGTNDEALIRLAKDLSKEKR 97 (113)
Q Consensus 58 LL~~~v~~vn~~tg~~e~~~~~tN~e~L~~fA~~L~~Erk 97 (113)
=|..|.-|+ .|+|+++ +-+|+|+.+|+.|.+-++
T Consensus 115 RL~~Pl~R~---~g~~~~i---SWdeAld~iA~~l~~i~~ 148 (806)
T TIGR02693 115 RLTYPLLRV---GDQFQAT---SWDDALTLMALLTKKIRD 148 (806)
T ss_pred cccCCeEec---CCcEEEc---cHHHHHHHHHHHHHHHHh
Confidence 345577776 4899999 999999999998877554
No 51
>cd02754 MopB_Nitrate-R-NapA-like Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol oxidation via a membrane-anchored tetraheme cytochrome. Members of the MopB_Nitrate-R-NapA CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=23.52 E-value=95 Score=26.45 Aligned_cols=33 Identities=27% Similarity=0.354 Sum_probs=25.3
Q ss_pred cCCcccccccCCccccCCCCCHHHHHHHHHHHHHHHHh
Q 033695 60 KKPVTKVNFETGLCEPCGQGTNDEALIRLAKDLSKEKR 97 (113)
Q Consensus 60 ~~~v~~vn~~tg~~e~~~~~tN~e~L~~fA~~L~~Erk 97 (113)
..|.-|++ .|+|++| +-+|+|+.+|+.|.+-+.
T Consensus 56 ~~Pl~R~~--~~~~~~i---SWdeAl~~ia~kl~~i~~ 88 (565)
T cd02754 56 TRPLLRRN--GGELVPV---SWDEALDLIAERFKAIQA 88 (565)
T ss_pred cCCeEeCC--CCCEEEc---cHHHHHHHHHHHHHHHHH
Confidence 44666664 2389998 999999999999986554
No 52
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=23.21 E-value=79 Score=28.44 Aligned_cols=30 Identities=27% Similarity=0.453 Sum_probs=23.7
Q ss_pred hcCCcccccccCCccccCCCCCHHHHHHHHHHHHHH
Q 033695 59 LKKPVTKVNFETGLCEPCGQGTNDEALIRLAKDLSK 94 (113)
Q Consensus 59 L~~~v~~vn~~tg~~e~~~~~tN~e~L~~fA~~L~~ 94 (113)
|.+|..|. .|+|+++ +.+|+|+.+|+.|..
T Consensus 273 L~~PliR~---~G~~~~i---SWdEAl~~iA~kL~~ 302 (687)
T PRK09130 273 LDRPYVRK---NGKLVPA---SWDEAFAAIAAKIKG 302 (687)
T ss_pred cCCccEec---CCceeec---CHHHHHHHHHHHHHh
Confidence 45576664 5889998 999999999998854
No 53
>KOG2567 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.94 E-value=84 Score=24.11 Aligned_cols=55 Identities=20% Similarity=0.236 Sum_probs=42.4
Q ss_pred CCCCchhhhhccHHHHHHHHHHHHHhhcCCcccccccCCccccCCC-CCHHHHHHH
Q 033695 33 LTGDEASVDVATKKNLESLVGIGERLLKKPVTKVNFETGLCEPCGQ-GTNDEALIR 87 (113)
Q Consensus 33 L~~~~~~mD~At~~Nl~~L~~ig~~LL~~~v~~vn~~tg~~e~~~~-~tN~e~L~~ 87 (113)
+....-.|-.-+..-+.+|+..|..+|.++-.|--++.|.-.-+.. -+=.|-|++
T Consensus 14 ~pp~a~emrV~~g~kirN~i~~A~~~L~~~~~r~VVfsg~Grai~KTVscaEilKr 69 (179)
T KOG2567|consen 14 LPPDANEMRVKSGSKIRNLIEFATELLQKGSHRCVVFSGSGRAIVKTVSCAEILKR 69 (179)
T ss_pred CCCCcceEEEccCchHHHHHHHHHHHhhCCCeeEEEEecCCcceeeeeeHHHHHhh
Confidence 4444556777788889999999999999998888888887666655 566666663
No 54
>PRK14991 tetrathionate reductase subunit A; Provisional
Probab=22.77 E-value=99 Score=29.27 Aligned_cols=36 Identities=11% Similarity=0.246 Sum_probs=29.0
Q ss_pred hcCCccccccc-CCccccCCCCCHHHHHHHHHH-----------HHHHHHh
Q 033695 59 LKKPVTKVNFE-TGLCEPCGQGTNDEALIRLAK-----------DLSKEKR 97 (113)
Q Consensus 59 L~~~v~~vn~~-tg~~e~~~~~tN~e~L~~fA~-----------~L~~Erk 97 (113)
|.+|.-|+... .|+|++| +.+|+|+.+|+ .|.+-|.
T Consensus 158 l~~PLkR~g~RGeg~w~~I---SWdeAl~eIaegg~lf~e~~v~~L~~i~~ 205 (1031)
T PRK14991 158 VLQPLKRVGKRGSGKWQRI---SFEQLVEEVVEGGDLFGEGHVDGLRAIRD 205 (1031)
T ss_pred ccCCeeccCCCCCCceeEc---cHHHHHHHHHhccccccchhHHHHHHHHh
Confidence 34588888763 5789999 99999999999 7877665
No 55
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=21.82 E-value=83 Score=27.44 Aligned_cols=30 Identities=27% Similarity=0.261 Sum_probs=22.0
Q ss_pred cCCcccccccCCccccCCCCCHHHHHHHHHHHHHH
Q 033695 60 KKPVTKVNFETGLCEPCGQGTNDEALIRLAKDLSK 94 (113)
Q Consensus 60 ~~~v~~vn~~tg~~e~~~~~tN~e~L~~fA~~L~~ 94 (113)
.+|..|. ..|+|+++ +.+|+|+.+|+.|.+
T Consensus 272 ~~Pl~R~--~~g~~~~i---sWdeAl~~ia~kL~~ 301 (603)
T TIGR01973 272 TKPLLRN--QEGNLLEV---SWAEALAIAAEKLKA 301 (603)
T ss_pred CCceEec--CCCceEEc---CHHHHHHHHHHHHhc
Confidence 4455441 35788888 899999999988865
No 56
>PF09496 CENP-O: Cenp-O kinetochore centromere component; InterPro: IPR018464 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) The CENP-O class proteins form a stable complex and are required for proper kinetochore function. They are involved in the prevention of premature sister chromatid separation during recovery from spindle damage []. CENP-O mediates the attachment of the centromere to the mitotic spindle by forming essential interactions between the microtubule-associated outer kinetochore proteins and the centromere-associated inner kinetochore proteins. It has been shown to be involved in chromosome segregation via regulation of the spindle in both yeast [] and human [].; GO: 0007059 chromosome segregation, 0051301 cell division, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3ZXU_C.
Probab=21.37 E-value=2.1e+02 Score=19.00 Aligned_cols=31 Identities=39% Similarity=0.625 Sum_probs=19.5
Q ss_pred HHHHHHHhhcCCcccccccCCccccCCCCCHHHHHHHHHHHHHHH
Q 033695 51 LVGIGERLLKKPVTKVNFETGLCEPCGQGTNDEALIRLAKDLSKE 95 (113)
Q Consensus 51 L~~ig~~LL~~~v~~vn~~tg~~e~~~~~tN~e~L~~fA~~L~~E 95 (113)
|.+++.+.|..| +..++.+.|..||+.|..+
T Consensus 46 l~~l~~~~l~~~--------------~~~~~~~dl~~F~~~l~~~ 76 (90)
T PF09496_consen 46 LEELAAKYLPGP--------------GQITNKQDLYRFARELRRE 76 (90)
T ss_dssp HHHHHHHHHTT----------------T---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccc--------------ccCCchhHHHHHHHHHHHH
Confidence 556777888744 1237889999999976654
No 57
>TIGR01701 Fdhalpha-like oxidoreductase alpha (molybdopterin) subunit. This model represents a well-defined clade of oxidoreductase alpha subunits most closely related to a group of formate dehydrogenases including the E. coli FdhH protein (TIGR01591). These alpha subunits contain a molybdopterin cofactor and generally associate with two other subunits which contain iron-sulfur clusters and cytochromes. The particular subunits with which this enzyme interacts and the substrate which is reduced is unknown at this time. In Ralstonia, the gene is associated with the cbb operon, but is not essential for CO2 fixation.
Probab=21.32 E-value=92 Score=28.19 Aligned_cols=30 Identities=20% Similarity=0.241 Sum_probs=21.9
Q ss_pred CcccccccCCccccCCCCCHHHHHHHHHHHHHHH
Q 033695 62 PVTKVNFETGLCEPCGQGTNDEALIRLAKDLSKE 95 (113)
Q Consensus 62 ~v~~vn~~tg~~e~~~~~tN~e~L~~fA~~L~~E 95 (113)
|..|. -.+|+|++| +-+|+|+.+|+.|.+-
T Consensus 103 Pm~R~-~g~g~~~~I---SWdEAl~~IA~kL~~~ 132 (743)
T TIGR01701 103 PLSLR-PGSDHYTPI---SWDDAYQEIAAKLNSL 132 (743)
T ss_pred CEEec-CCCCCEEEc---cHHHHHHHHHHHHHhc
Confidence 55553 245788888 8888888888888753
No 58
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=21.25 E-value=1.8e+02 Score=22.06 Aligned_cols=44 Identities=5% Similarity=0.130 Sum_probs=30.6
Q ss_pred ccHHHHHHHHHHHHHhhcCCcccccccCCccccCCCCCHHHHHHHHHHHHH
Q 033695 43 ATKKNLESLVGIGERLLKKPVTKVNFETGLCEPCGQGTNDEALIRLAKDLS 93 (113)
Q Consensus 43 At~~Nl~~L~~ig~~LL~~~v~~vn~~tg~~e~~~~~tN~e~L~~fA~~L~ 93 (113)
.+++|+..++.+ -.+| .-||+.+|.=. ++..+.+++.+|.+.+-
T Consensus 161 L~peNV~~a~~~----~~~p-~gVDvsSGVE~--~G~KD~~ki~~f~~~v~ 204 (207)
T PRK13958 161 INSENIQTVEQL----KLSH-QGYDIASGIET--NGRKDINKMTAIVNIVK 204 (207)
T ss_pred CCHHHHHHHHhc----CCCC-CEEEcccccCC--CCCCCHHHHHHHHHHHH
Confidence 478888764332 1234 78999888843 46788999999988763
No 59
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=21.12 E-value=1.1e+02 Score=27.59 Aligned_cols=32 Identities=25% Similarity=0.233 Sum_probs=24.2
Q ss_pred cCCcccccccCCccccCCCCCHHHHHHHHHHHHHHHHh
Q 033695 60 KKPVTKVNFETGLCEPCGQGTNDEALIRLAKDLSKEKR 97 (113)
Q Consensus 60 ~~~v~~vn~~tg~~e~~~~~tN~e~L~~fA~~L~~Erk 97 (113)
.+|.-|+ .|+|+++ +.+|+|+.+|+.|.+-++
T Consensus 274 ~~Pl~R~---~g~~~~i---SWdeAl~~ia~~L~~i~~ 305 (776)
T PRK09129 274 TKPMIKQ---GGQWKEV---DWETALEYVAEGLKGIIE 305 (776)
T ss_pred CCCeEec---CCceEEc---CHHHHHHHHHHHHHHHHh
Confidence 3455553 5889988 999999999998876543
No 60
>PF14305 ATPgrasp_TupA: TupA-like ATPgrasp
Probab=21.07 E-value=66 Score=25.01 Aligned_cols=32 Identities=34% Similarity=0.589 Sum_probs=26.9
Q ss_pred hhhhhccHHHHHHHHHHHHHhhcC-Cccccccc
Q 033695 38 ASVDVATKKNLESLVGIGERLLKK-PVTKVNFE 69 (113)
Q Consensus 38 ~~mD~At~~Nl~~L~~ig~~LL~~-~v~~vn~~ 69 (113)
..-+-..|+|++.++++|+.|-+. +-.||++-
T Consensus 171 ~~~~~~kP~~l~emi~iA~~Ls~~f~fvRVDlY 203 (239)
T PF14305_consen 171 PDEDIPKPKNLEEMIEIAEKLSKGFPFVRVDLY 203 (239)
T ss_pred CCCCCCCChhHHHHHHHHHHHccCCCEEEEEEE
Confidence 344678899999999999999887 78899974
No 61
>TIGR03129 one_C_dehyd_B formylmethanofuran dehydrogenase subunit B. Members of this largely archaeal protein family are subunit B of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit C. Note that this model does not distinguish tungsten (FwdB) from molybdenum-containing (FmdB) forms of this enzyme.
Probab=20.14 E-value=1.1e+02 Score=24.66 Aligned_cols=31 Identities=19% Similarity=0.347 Sum_probs=19.5
Q ss_pred hcCCcccccccCCccccCCCCCHHHHHHHHHHHHHHH
Q 033695 59 LKKPVTKVNFETGLCEPCGQGTNDEALIRLAKDLSKE 95 (113)
Q Consensus 59 L~~~v~~vn~~tg~~e~~~~~tN~e~L~~fA~~L~~E 95 (113)
|.+|..|+ .|+|+++ +-+|+|+.+|+.|.+-
T Consensus 46 l~~Pl~R~---~g~~~~i---sWdeAl~~ia~~l~~~ 76 (421)
T TIGR03129 46 ITRPMIRK---NGDGKEV---SYEEAIEKAAEILKNA 76 (421)
T ss_pred cCCCeEcC---CCCeeeC---ChHHHHHHHHHHHHhh
Confidence 34455553 3667776 7777777777776643
Done!