Query 033695
Match_columns 113
No_of_seqs 106 out of 246
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 08:19:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033695.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033695hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1oxw_A Patatin; alpha/beta cla 99.9 4.6E-24 1.6E-28 172.6 8.2 94 1-104 279-372 (373)
2 2qg3_A UPF0130 protein AF_2059 46.8 24 0.0008 26.4 4.2 34 42-94 165-198 (208)
3 1tlj_A Hypothetical UPF0130 pr 45.8 22 0.00074 26.6 3.9 34 42-94 160-193 (213)
4 2dvk_A UPF0130 protein APE0816 44.8 27 0.00092 25.6 4.2 33 42-93 150-182 (188)
5 2it2_A UPF0130 protein PH1069; 43.5 21 0.00072 26.4 3.5 33 42-93 164-196 (200)
6 4aay_A AROA; oxidoreductase, r 41.6 18 0.00062 31.7 3.3 33 59-97 124-156 (845)
7 2e7z_A Acetylene hydratase AHY 39.1 24 0.00084 29.7 3.6 36 59-97 59-96 (727)
8 2iv2_X Formate dehydrogenase H 37.1 27 0.00094 29.4 3.6 35 59-97 62-96 (715)
9 1g8k_A Arsenite oxidase; molyb 36.8 26 0.00089 30.2 3.5 32 60-97 121-152 (825)
10 2vpz_A Thiosulfate reductase; 36.1 29 0.001 29.5 3.7 35 60-97 96-133 (765)
11 2ivf_A Ethylbenzene dehydrogen 34.3 32 0.0011 30.4 3.7 36 59-97 143-179 (976)
12 2nap_A Protein (periplasmic ni 31.0 40 0.0014 28.3 3.6 35 59-97 63-97 (723)
13 1ti6_A Pyrogallol hydroxytrans 27.6 48 0.0016 28.7 3.6 24 71-97 107-130 (875)
14 3ml1_A NAPA, periplasmic nitra 26.7 48 0.0016 28.7 3.4 36 59-97 70-109 (802)
15 3i9v_3 NADH-quinone oxidoreduc 26.5 35 0.0012 29.5 2.6 32 59-96 306-337 (783)
16 1h0h_A Formate dehydrogenase ( 22.1 72 0.0024 28.2 3.7 36 59-98 70-105 (977)
17 1xpp_A TA1416, DNA-directed RN 21.4 1.3E+02 0.0045 20.2 4.2 32 24-60 63-94 (115)
18 1kqf_A FDH-N alpha, formate de 21.3 76 0.0026 28.2 3.7 35 59-97 108-142 (1015)
19 1eu1_A Dimethyl sulfoxide redu 20.9 81 0.0028 26.8 3.7 25 70-97 78-102 (780)
20 1tmo_A TMAO reductase, trimeth 20.8 67 0.0023 27.5 3.2 25 70-97 111-135 (829)
No 1
>1oxw_A Patatin; alpha/beta class fold with approximately three layers; 2.20A {Solanum cardiophyllum} SCOP: c.19.1.3
Probab=99.90 E-value=4.6e-24 Score=172.59 Aligned_cols=94 Identities=50% Similarity=0.693 Sum_probs=87.8
Q ss_pred CcchHHHHHHHHHHHhhhcCCCCCeeeeecCCCCCCchhhhhccHHHHHHHHHHHHHhhcCCcccccccCCccccCCCCC
Q 033695 1 MQSSSDMTDFHISTAFKALHSENGYLRIQDDTLTGDEASVDVATKKNLESLVGIGERLLKKPVTKVNFETGLCEPCGQGT 80 (113)
Q Consensus 1 ~~gssDmVD~~ls~lf~~~~~~~nYlRIQ~~~L~~~~~~mD~At~~Nl~~L~~ig~~LL~~~v~~vn~~tg~~e~~~~~t 80 (113)
|+|++||||+|++++|+.+.++++|+|||++.|++...+||+++++||+.|+++|+++|+++|++||++ |
T Consensus 279 ~~~~~~~~d~~~~~~~~~~~~~~~Y~Ri~~~~l~~~~~~lD~~~~~~l~~L~~~~~~~l~~~~~~~~~~----------t 348 (373)
T 1oxw_A 279 DAASSYMTDYYLSTAFQALDSKNNYLRVQENALTGTTTEMDDASEANMELLVQVGENLLKKPVSEDNPE----------T 348 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCGGGEEEECCCCBCGGGGCTTCCCHHHHHHHHHHHHHHHTSBSSSSCCC----------B
T ss_pred HHhhHHHHHHHHHHHhhccCCCCcEEEEeCCCCCCcccccccCCHHHHHHHHHHHHHHHhcccccccch----------h
Confidence 357899999999999998888999999999768888899999999999999999999999999999998 5
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCC
Q 033695 81 NDEALIRLAKDLSKEKRIRDMRSP 104 (113)
Q Consensus 81 N~e~L~~fA~~L~~Erk~R~~~~~ 104 (113)
|+++|++||++|++||++|..+.|
T Consensus 349 n~~~l~~~a~~L~~e~~~r~~~~~ 372 (373)
T 1oxw_A 349 YEEALKRFAKLLSDRKKLRANKAS 372 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHhhcccccCC
Confidence 999999999999999999998875
No 2
>2qg3_A UPF0130 protein AF_2059; TYW3 methyltransferase-like prrotein, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.95A {Archaeoglobus fulgidus dsm 4304}
Probab=46.82 E-value=24 Score=26.43 Aligned_cols=34 Identities=24% Similarity=0.240 Sum_probs=30.3
Q ss_pred hccHHHHHHHHHHHHHhhcCCcccccccCCccccCCCCCHHHHHHHHHHHHHH
Q 033695 42 VATKKNLESLVGIGERLLKKPVTKVNFETGLCEPCGQGTNDEALIRLAKDLSK 94 (113)
Q Consensus 42 ~At~~Nl~~L~~ig~~LL~~~v~~vn~~tg~~e~~~~~tN~e~L~~fA~~L~~ 94 (113)
-.+++-|+.|+.+|.+.+. .|.++|.+|-+.|..
T Consensus 165 lV~eeyL~~Lv~~aN~kl~-------------------~nk~Rl~rl~~~l~~ 198 (208)
T 2qg3_A 165 LVDDAYLSYVVRWANEKLL-------------------KGKEKLGRLQEALES 198 (208)
T ss_dssp SSCHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHH
T ss_pred ecCHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHH
Confidence 4788999999999999999 799999999887754
No 3
>1tlj_A Hypothetical UPF0130 protein SSO0622; midwest center for structural genomics, PSI, protein structure initiative, MCSG; 2.80A {Sulfolobus solfataricus} SCOP: d.282.1.1
Probab=45.78 E-value=22 Score=26.65 Aligned_cols=34 Identities=21% Similarity=0.295 Sum_probs=29.9
Q ss_pred hccHHHHHHHHHHHHHhhcCCcccccccCCccccCCCCCHHHHHHHHHHHHHH
Q 033695 42 VATKKNLESLVGIGERLLKKPVTKVNFETGLCEPCGQGTNDEALIRLAKDLSK 94 (113)
Q Consensus 42 ~At~~Nl~~L~~ig~~LL~~~v~~vn~~tg~~e~~~~~tN~e~L~~fA~~L~~ 94 (113)
-.+++-|+.|+.+|.+.+. .|.++|.+|-..|..
T Consensus 160 lV~~eyL~~Lv~~aN~kl~-------------------~nk~rl~rl~~~l~~ 193 (213)
T 1tlj_A 160 RVDKDKIKTLVNVCNEVLA-------------------RGKQKMNLLKDLLSS 193 (213)
T ss_dssp CCCHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHC-
T ss_pred ecCHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHH
Confidence 4778999999999999999 799999999887754
No 4
>2dvk_A UPF0130 protein APE0816; hypothetical protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=44.85 E-value=27 Score=25.65 Aligned_cols=33 Identities=12% Similarity=0.278 Sum_probs=29.5
Q ss_pred hccHHHHHHHHHHHHHhhcCCcccccccCCccccCCCCCHHHHHHHHHHHHH
Q 033695 42 VATKKNLESLVGIGERLLKKPVTKVNFETGLCEPCGQGTNDEALIRLAKDLS 93 (113)
Q Consensus 42 ~At~~Nl~~L~~ig~~LL~~~v~~vn~~tg~~e~~~~~tN~e~L~~fA~~L~ 93 (113)
-.+++=|+.|+.+|.+.+. .|.++|.+|-..|.
T Consensus 150 lV~~eyl~~Lv~~aN~kl~-------------------~nk~rl~r~~~~l~ 182 (188)
T 2dvk_A 150 IVGDDALDMLIEKANTILV-------------------ESRIGLDTFSREVE 182 (188)
T ss_dssp CCCHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHH
T ss_pred ecCHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHH
Confidence 4678999999999999999 79999999988774
No 5
>2it2_A UPF0130 protein PH1069; hypothetical protein, NPPSFA, national project on protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2drv_A 2it3_A
Probab=43.46 E-value=21 Score=26.44 Aligned_cols=33 Identities=21% Similarity=0.353 Sum_probs=29.7
Q ss_pred hccHHHHHHHHHHHHHhhcCCcccccccCCccccCCCCCHHHHHHHHHHHHH
Q 033695 42 VATKKNLESLVGIGERLLKKPVTKVNFETGLCEPCGQGTNDEALIRLAKDLS 93 (113)
Q Consensus 42 ~At~~Nl~~L~~ig~~LL~~~v~~vn~~tg~~e~~~~~tN~e~L~~fA~~L~ 93 (113)
-.+++-|+.|+.+|.+.+. .|.++|.+|-+.|-
T Consensus 164 lV~~eyl~~Lv~~aN~kl~-------------------~n~~rl~rl~~~l~ 196 (200)
T 2it2_A 164 FVGEEYLNKIVEIANDQMR-------------------RFKEKLKRLESKIN 196 (200)
T ss_dssp CCCHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHGG
T ss_pred ecCHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHH
Confidence 4788999999999999999 79999999987763
No 6
>4aay_A AROA; oxidoreductase, rieske, iron sulfur, molybdopterin; HET: MGD; 2.70A {Rhizobium species}
Probab=41.60 E-value=18 Score=31.72 Aligned_cols=33 Identities=27% Similarity=0.315 Sum_probs=27.2
Q ss_pred hcCCcccccccCCccccCCCCCHHHHHHHHHHHHHHHHh
Q 033695 59 LKKPVTKVNFETGLCEPCGQGTNDEALIRLAKDLSKEKR 97 (113)
Q Consensus 59 L~~~v~~vn~~tg~~e~~~~~tN~e~L~~fA~~L~~Erk 97 (113)
|.+|..|++ |+|++| +-+|+|+.+|+.|.+-++
T Consensus 124 L~~Pl~R~~---g~~~~i---SWdeAld~iA~kl~~i~~ 156 (845)
T 4aay_A 124 LTDPLVWRY---GQMQPT---SWDDALDLVARVTAKIVK 156 (845)
T ss_dssp CCSCEEEET---TEEEEC---CHHHHHHHHHHHHHHHHH
T ss_pred ccCCeEecC---CCEeEe---CHHHHHHHHHHHHHHHHH
Confidence 455777764 899999 999999999999987654
No 7
>2e7z_A Acetylene hydratase AHY; tungstoprotein, DMSO reductase family, iron-sulfur-cluster, lyase; HET: MGD; 1.26A {Pelobacter acetylenicus}
Probab=39.13 E-value=24 Score=29.69 Aligned_cols=36 Identities=25% Similarity=0.198 Sum_probs=28.2
Q ss_pred hcCCccccc-ccC-CccccCCCCCHHHHHHHHHHHHHHHHh
Q 033695 59 LKKPVTKVN-FET-GLCEPCGQGTNDEALIRLAKDLSKEKR 97 (113)
Q Consensus 59 L~~~v~~vn-~~t-g~~e~~~~~tN~e~L~~fA~~L~~Erk 97 (113)
|.+|..|++ ..+ |+|++| +-+|+|+.+|+.|.+-++
T Consensus 59 l~~Pl~R~g~~rG~g~~~~i---sWdeAl~~ia~~l~~i~~ 96 (727)
T 2e7z_A 59 VLYPLKNVGSKRGEQRWERI---SWDQALDEIAEKLKKIIA 96 (727)
T ss_dssp CCSCEEECSSSTTCCCEEEC---CHHHHHHHHHHHHHHHHH
T ss_pred ccCchhhcCCCCCCCCeEEe---cHHHHHHHHHHHHHHHHH
Confidence 456777765 333 899999 999999999999977554
No 8
>2iv2_X Formate dehydrogenase H; oxidoreductase, 4Fe-4S, anaerobic, complete proteome, direct protein sequencing, Fe4S4, iron, iron sulfur cluster; HET: 2MD MGD; 2.27A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 1fdi_A* 1fdo_A* 1aa6_A*
Probab=37.11 E-value=27 Score=29.37 Aligned_cols=35 Identities=40% Similarity=0.483 Sum_probs=26.5
Q ss_pred hcCCcccccccCCccccCCCCCHHHHHHHHHHHHHHHHh
Q 033695 59 LKKPVTKVNFETGLCEPCGQGTNDEALIRLAKDLSKEKR 97 (113)
Q Consensus 59 L~~~v~~vn~~tg~~e~~~~~tN~e~L~~fA~~L~~Erk 97 (113)
|.+|..|++ ..|+|++| +-+|+|+.+|+.|..-++
T Consensus 62 l~~Pl~R~~-~~g~~~~i---sWdeAl~~ia~~l~~i~~ 96 (715)
T 2iv2_X 62 LKTPMIRRQ-RGGKLEPV---SWDEALNYVAERLSAIKE 96 (715)
T ss_dssp CCSCEECCS-TTSCCEEC---CHHHHHHHHHHHHHHHHH
T ss_pred ccCCeEecC-CCCCEEEe---eHHHHHHHHHHHHHHHHH
Confidence 345665654 23899999 999999999999976554
No 9
>1g8k_A Arsenite oxidase; molybdopterin, [3Fe-4S] cluster, [2Fe-2S] rieske, oxidoreductase; HET: MGD; 1.64A {Alcaligenes faecalis} SCOP: b.52.2.2 c.81.1.1 PDB: 1g8j_A*
Probab=36.77 E-value=26 Score=30.16 Aligned_cols=32 Identities=19% Similarity=0.023 Sum_probs=26.3
Q ss_pred cCCcccccccCCccccCCCCCHHHHHHHHHHHHHHHHh
Q 033695 60 KKPVTKVNFETGLCEPCGQGTNDEALIRLAKDLSKEKR 97 (113)
Q Consensus 60 ~~~v~~vn~~tg~~e~~~~~tN~e~L~~fA~~L~~Erk 97 (113)
.+|..|++ |+|++| +-+|+|+.+|+.|..-+.
T Consensus 121 ~~Pl~R~~---g~~~~i---SWdeAl~~ia~~l~~i~~ 152 (825)
T 1g8k_A 121 SAPRLYAA---DEWVDT---TWDHAMALYAGLIKKTLD 152 (825)
T ss_dssp CSCEEECS---SSEEEC---CHHHHHHHHHHHHHHHHH
T ss_pred cCCeEecC---CceEEc---cHHHHHHHHHHHHHHHHH
Confidence 45766764 899999 999999999999987654
No 10
>2vpz_A Thiosulfate reductase; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_A* 2vpw_A* 2vpy_A*
Probab=36.09 E-value=29 Score=29.50 Aligned_cols=35 Identities=29% Similarity=0.393 Sum_probs=26.9
Q ss_pred cCCccccc--ccC-CccccCCCCCHHHHHHHHHHHHHHHHh
Q 033695 60 KKPVTKVN--FET-GLCEPCGQGTNDEALIRLAKDLSKEKR 97 (113)
Q Consensus 60 ~~~v~~vn--~~t-g~~e~~~~~tN~e~L~~fA~~L~~Erk 97 (113)
.+|..|++ ..+ |+|++| +-+|+|+.+|+.|..-++
T Consensus 96 ~~Pl~R~g~~~rG~g~~~~i---sWdeAl~~ia~~l~~i~~ 133 (765)
T 2vpz_A 96 KRPLIRVEGSQRGEGKYRVA---TWEEALDHIAKKMLEIRE 133 (765)
T ss_dssp CSCEEECTTCCSSSCCEEEC---CHHHHHHHHHHHHHHHHH
T ss_pred cCCceeCCCCCCCCCceEEe---eHHHHHHHHHHHHHHHHH
Confidence 45666665 333 899999 999999999999976554
No 11
>2ivf_A Ethylbenzene dehydrogenase alpha-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Aromatoleum aromaticum}
Probab=34.30 E-value=32 Score=30.38 Aligned_cols=36 Identities=22% Similarity=0.245 Sum_probs=29.2
Q ss_pred hcCCcccccccC-CccccCCCCCHHHHHHHHHHHHHHHHh
Q 033695 59 LKKPVTKVNFET-GLCEPCGQGTNDEALIRLAKDLSKEKR 97 (113)
Q Consensus 59 L~~~v~~vn~~t-g~~e~~~~~tN~e~L~~fA~~L~~Erk 97 (113)
|+.|..|++..+ |+|++| +-+|+|+.+|+.|..-++
T Consensus 143 l~~Pl~R~g~rG~g~~~~i---SWdeAl~~IA~~l~~i~~ 179 (976)
T 2ivf_A 143 VKYPLKRVGKRGEGKWKRV---SWDEAAGDIADSIIDSFE 179 (976)
T ss_dssp CCSCEEECSSTTSCCEEEC---CHHHHHHHHHHHHHHHHH
T ss_pred ccCCeeeccCCCCCCeEEe---cHHHHHHHHHHHHHHHHH
Confidence 466777776543 899999 999999999999987654
No 12
>2nap_A Protein (periplasmic nitrate reductase); nitrogenous acceptor, dissimilatory nitrate reductase; HET: MGD MES; 1.90A {Desulfovibrio desulfuricans} SCOP: b.52.2.2 c.81.1.1 PDB: 2jim_A* 2jir_A* 2jip_A* 2v45_A* 2v3v_A* 2jiq_A* 2jio_A*
Probab=31.02 E-value=40 Score=28.33 Aligned_cols=35 Identities=26% Similarity=0.385 Sum_probs=26.5
Q ss_pred hcCCcccccccCCccccCCCCCHHHHHHHHHHHHHHHHh
Q 033695 59 LKKPVTKVNFETGLCEPCGQGTNDEALIRLAKDLSKEKR 97 (113)
Q Consensus 59 L~~~v~~vn~~tg~~e~~~~~tN~e~L~~fA~~L~~Erk 97 (113)
|.+|..|+. ..|+|++| +-+|+|+.+|+.|.+-++
T Consensus 63 l~~Pl~R~~-~~g~~~~i---sWdeAl~~ia~~l~~~~~ 97 (723)
T 2nap_A 63 VTQPLVRRH-KGGKLEPV---SWDEALDLMASRFRSSID 97 (723)
T ss_dssp CCSCEECSS-TTSCCEEC---CHHHHHHHHHHHHHHHHH
T ss_pred hccCEeccC-CCCCEEEe---cHHHHHHHHHHHHHHHHH
Confidence 345655553 35889999 999999999999987554
No 13
>1ti6_A Pyrogallol hydroxytransferase large subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.52.2.2 c.81.1.1 PDB: 1ti2_A* 1ti4_A* 1vld_M* 1vle_M* 1vlf_M*
Probab=27.55 E-value=48 Score=28.71 Aligned_cols=24 Identities=21% Similarity=0.145 Sum_probs=21.5
Q ss_pred CccccCCCCCHHHHHHHHHHHHHHHHh
Q 033695 71 GLCEPCGQGTNDEALIRLAKDLSKEKR 97 (113)
Q Consensus 71 g~~e~~~~~tN~e~L~~fA~~L~~Erk 97 (113)
|+|++| +-+|+|+.+|+.|.+-++
T Consensus 107 g~~~~i---SWdeAl~~iA~kl~~i~~ 130 (875)
T 1ti6_A 107 SDYERI---SWDEATDIVVAEINRIKH 130 (875)
T ss_dssp GGEEEC---CHHHHHHHHHHHHHHHHH
T ss_pred CCEEEe---eHHHHHHHHHHHHHHHHH
Confidence 889999 999999999999987654
No 14
>3ml1_A NAPA, periplasmic nitrate reductase; heterodimer, oxidoreductase; HET: MGD HEC; 1.60A {Ralstonia eutropha} PDB: 3o5a_A* 1ogy_A* 2nya_A*
Probab=26.67 E-value=48 Score=28.70 Aligned_cols=36 Identities=19% Similarity=0.417 Sum_probs=27.4
Q ss_pred hcCCcccccc----cCCccccCCCCCHHHHHHHHHHHHHHHHh
Q 033695 59 LKKPVTKVNF----ETGLCEPCGQGTNDEALIRLAKDLSKEKR 97 (113)
Q Consensus 59 L~~~v~~vn~----~tg~~e~~~~~tN~e~L~~fA~~L~~Erk 97 (113)
|.+|..|+.. ..|+|++| +-+|+|+.+|+.|..-++
T Consensus 70 l~~Pl~R~~~G~~~~~g~~~~i---sWdeAl~~ia~~l~~i~~ 109 (802)
T 3ml1_A 70 LTRPLMRMKNGKYDKNGDFAPV---TWDQAFDEMERQFKRVLK 109 (802)
T ss_dssp CCSCEEEEETTEECTTSEEEEC---CHHHHHHHHHHHHHHHHH
T ss_pred hcCCeEeccCCCCCcCCCeEEe---CHHHHHHHHHHHHHHHHH
Confidence 3457777643 14889999 999999999999976554
No 15
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*
Probab=26.45 E-value=35 Score=29.46 Aligned_cols=32 Identities=28% Similarity=0.462 Sum_probs=25.1
Q ss_pred hcCCcccccccCCccccCCCCCHHHHHHHHHHHHHHHH
Q 033695 59 LKKPVTKVNFETGLCEPCGQGTNDEALIRLAKDLSKEK 96 (113)
Q Consensus 59 L~~~v~~vn~~tg~~e~~~~~tN~e~L~~fA~~L~~Er 96 (113)
|.+|..|++ |+|+++ +.+|+|+.+|+.|..-+
T Consensus 306 L~~Pl~R~~---G~~~~i---SWdeAl~~ia~~L~~i~ 337 (783)
T 3i9v_3 306 LKTPLVRKE---GRLVEA---TWEEAFLALKEGLKEAR 337 (783)
T ss_dssp CCSCEEESS---SSEEEC---CHHHHHHHHHHHHHTCC
T ss_pred ccCceEccC---CceeEe---CHHHHHHHHHHHHHhhc
Confidence 455766653 899999 99999999999887543
No 16
>1h0h_A Formate dehydrogenase (large subunit); tungsten selenium formate dehydrogenase, selenocysteine, molybdopterin, MGD, iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A {Desulfovibrio gigas} SCOP: b.52.2.2 c.81.1.1
Probab=22.08 E-value=72 Score=28.22 Aligned_cols=36 Identities=17% Similarity=0.142 Sum_probs=27.6
Q ss_pred hcCCcccccccCCccccCCCCCHHHHHHHHHHHHHHHHhh
Q 033695 59 LKKPVTKVNFETGLCEPCGQGTNDEALIRLAKDLSKEKRI 98 (113)
Q Consensus 59 L~~~v~~vn~~tg~~e~~~~~tN~e~L~~fA~~L~~Erk~ 98 (113)
|.+|..|+ -..|+|++| +-+|+|+.+|+.|.+-|..
T Consensus 70 l~~Pl~R~-rg~g~~~~i---SWdeAl~~ia~~l~~i~~~ 105 (977)
T 1h0h_A 70 PANPLYRA-PGSDQWEEK---SWDWMLDTIAERVAKTREA 105 (977)
T ss_dssp CSSCEEEC-TTCSSCEEC---CHHHHHHHHHHHHHHHHHH
T ss_pred ccCCEEec-cCCCCeeec---CHHHHHHHHHHHHHHHHHh
Confidence 35566665 235899999 9999999999999876543
No 17
>1xpp_A TA1416, DNA-directed RNA polymerase subunit L; structural genomics, protein structure initiative, MCSG; 1.60A {Thermoplasma acidophilum} SCOP: d.74.3.2
Probab=21.37 E-value=1.3e+02 Score=20.19 Aligned_cols=32 Identities=16% Similarity=0.163 Sum_probs=20.4
Q ss_pred CeeeeecCCCCCCchhhhhccHHHHHHHHHHHHHhhc
Q 033695 24 GYLRIQDDTLTGDEASVDVATKKNLESLVGIGERLLK 60 (113)
Q Consensus 24 nYlRIQ~~~L~~~~~~mD~At~~Nl~~L~~ig~~LL~ 60 (113)
=.||||+++ .. +.| |=.+-++.|....+.+.+
T Consensus 63 ~~lrIqT~~---~~-p~e-aL~~al~~L~~~~~~l~~ 94 (115)
T 1xpp_A 63 PQIYVRVKS---GK-PQS-AIKRAVRKLSKLYEDLGT 94 (115)
T ss_dssp CEEEEEESS---SC-HHH-HHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEeCC---CC-hHH-HHHHHHHHHHHHHHHHHH
Confidence 389999983 22 332 344556777777777776
No 18
>1kqf_A FDH-N alpha, formate dehydrogenase, nitrate-inducible, major S; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 1kqg_A*
Probab=21.26 E-value=76 Score=28.19 Aligned_cols=35 Identities=20% Similarity=0.271 Sum_probs=27.2
Q ss_pred hcCCcccccccCCccccCCCCCHHHHHHHHHHHHHHHHh
Q 033695 59 LKKPVTKVNFETGLCEPCGQGTNDEALIRLAKDLSKEKR 97 (113)
Q Consensus 59 L~~~v~~vn~~tg~~e~~~~~tN~e~L~~fA~~L~~Erk 97 (113)
|.+|..|+ -..|+|++| +-+|+|+.+|+.|..-+.
T Consensus 108 l~~Pl~R~-~g~g~~~~i---SWdeAl~~iA~~l~~i~~ 142 (1015)
T 1kqf_A 108 LRYPEYRA-PGSDKWQRI---SWEEAFSRIAKLMKADRD 142 (1015)
T ss_dssp CCSCEEEC-TTCSSCEEC---CHHHHHHHHHHHHHHHHH
T ss_pred hcCCEEec-cCCCceeEC---CHHHHHHHHHHHHHHHHh
Confidence 45566665 235899999 999999999999987654
No 19
>1eu1_A Dimethyl sulfoxide reductase; molybdenum, molybdenum cofactor, DMSO, molybdopte oxidoreductase; HET: GLC MGD EPE; 1.30A {Rhodobacter sphaeroides} SCOP: b.52.2.2 c.81.1.1 PDB: 4dmr_A* 1dmr_A* 1e5v_A* 1h5n_A* 2dmr_A* 3dmr_A* 1e61_A* 1e60_A* 1e18_A* 1dms_A*
Probab=20.87 E-value=81 Score=26.76 Aligned_cols=25 Identities=32% Similarity=0.315 Sum_probs=21.8
Q ss_pred CCccccCCCCCHHHHHHHHHHHHHHHHh
Q 033695 70 TGLCEPCGQGTNDEALIRLAKDLSKEKR 97 (113)
Q Consensus 70 tg~~e~~~~~tN~e~L~~fA~~L~~Erk 97 (113)
.|+|++| +-+|+|+.+|+.|..-++
T Consensus 78 ~g~~~~i---SWdeAl~~ia~~l~~i~~ 102 (780)
T 1eu1_A 78 NGDFVRV---TWDEALDLVARELKRVQE 102 (780)
T ss_dssp SSCEEEC---CHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEe---cHHHHHHHHHHHHHHHHH
Confidence 4899999 999999999999987654
No 20
>1tmo_A TMAO reductase, trimethylamine N-oxide reductase; oxidoreductase, oxotransferase, molybdoenzyme, MO-cofactor, molybdenum; HET: 2MD; 2.50A {Shewanella massilia} SCOP: b.52.2.2 c.81.1.1
Probab=20.83 E-value=67 Score=27.49 Aligned_cols=25 Identities=20% Similarity=0.072 Sum_probs=21.6
Q ss_pred CCccccCCCCCHHHHHHHHHHHHHHHHh
Q 033695 70 TGLCEPCGQGTNDEALIRLAKDLSKEKR 97 (113)
Q Consensus 70 tg~~e~~~~~tN~e~L~~fA~~L~~Erk 97 (113)
.|+|++| +-+|+|+.+|+.|.+-++
T Consensus 111 ~g~~~~i---SWdeAl~~ia~~l~~i~~ 135 (829)
T 1tmo_A 111 DFRFVRV---TWDKALTLFKHSLDEVQT 135 (829)
T ss_dssp SCEEEEC---CHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEe---cHHHHHHHHHHHHHHHHH
Confidence 3889999 999999999999987654
Done!