BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>033696
MASSLSTEMATTFLSFTARPQNPFAKIRTTVLPVLFKPRARNLSYKTMPSSTHSEFIAFK
VPRPYRRFTASASAAATTASEDSDLLTKIPPDNRIPATIITGFLGSGKNTGSA

High Scoring Gene Products

Symbol, full name Information P value
PTAC17
plastid transcriptionally active 17 		protein from Arabidopsis thaliana 9.2e-17
AT1G15730 protein from Arabidopsis thaliana 2.9e-08

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  033696
        (113 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2198993 - symbol:PTAC17 "plastid transcription...   213  9.2e-17   1
TAIR|locus:2036189 - symbol:AT1G15730 species:3702 "Arabi...   135  2.9e-08   1


>TAIR|locus:2198993 [details] [associations]
            symbol:PTAC17 "plastid transcriptionally active 17"
            species:3702 "Arabidopsis thaliana" [GO:0009295 "nucleoid"
            evidence=IDA] [GO:0009508 "plastid chromosome" evidence=IDA]
            [GO:0009507 "chloroplast" evidence=IDA] [GO:0009570 "chloroplast
            stroma" evidence=IDA] Pfam:PF02492 Pfam:PF07683 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0009570 EMBL:AC018849
            eggNOG:COG0523 Gene3D:3.30.1220.10 InterPro:IPR011629
            InterPro:IPR003495 SMART:SM00833 SUPFAM:SSF90002
            HOGENOM:HOG000182211 HSSP:P24203 GO:GO:0009508
            ProtClustDB:CLSN2679508 EMBL:BT014948 EMBL:BT015396 IPI:IPI00525540
            PIR:F96836 RefSeq:NP_178163.1 UniGene:At.33893
            ProteinModelPortal:Q9M8L6 SMR:Q9M8L6 IntAct:Q9M8L6 STRING:Q9M8L6
            PaxDb:Q9M8L6 PRIDE:Q9M8L6 EnsemblPlants:AT1G80480.1 GeneID:844387
            KEGG:ath:AT1G80480 TAIR:At1g80480 InParanoid:Q9M8L6 OMA:MERSEDI
            PhylomeDB:Q9M8L6 Genevestigator:Q9M8L6 Uniprot:Q9M8L6
        Length = 444

 Score = 213 (80.0 bits), Expect = 9.2e-17, P = 9.2e-17
 Identities = 54/112 (48%), Positives = 68/112 (60%)

Query:     3 SSLST-EMATTFLSFTARPQNPFA---KIRTTVLPVLFKPRARNLSYKTMPSSTHSEFIA 58
             ++LST E+ATTFLSFTA P++  A   +  +  + VL +PRA  +S +T PS  +S  + 
Sbjct:     2 ATLSTLEIATTFLSFTA-PRSSAAFNYRFSSAAVSVLSRPRATTVSVRTTPSFFYSPVV- 59

Query:    59 FKVPRPYRRFXXXXXXXXXXXXEDSDLLTKIPPDNRIPATIITGFLGSGKNT 110
                    RR             EDSD+ TKIPPDNRIPATIITGFLGSGK T
Sbjct:    60 -------RRQRFSSVSASATQTEDSDVTTKIPPDNRIPATIITGFLGSGKTT 104


>TAIR|locus:2036189 [details] [associations]
            symbol:AT1G15730 species:3702 "Arabidopsis thaliana"
            [GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009507
            "chloroplast" evidence=IDA] Pfam:PF02492 Pfam:PF07683 EMBL:CP002684
            GO:GO:0009570 EMBL:AC034256 Gene3D:3.30.1220.10 InterPro:IPR011629
            InterPro:IPR003495 SMART:SM00833 SUPFAM:SSF90002
            HOGENOM:HOG000182211 HSSP:P24203 EMBL:AF367261 EMBL:AY093965
            EMBL:BT000764 IPI:IPI00537257 PIR:E86291 RefSeq:NP_173025.1
            UniGene:At.16909 UniGene:At.48193 ProteinModelPortal:Q9LMR1
            SMR:Q9LMR1 IntAct:Q9LMR1 STRING:Q9LMR1 PRIDE:Q9LMR1
            EnsemblPlants:AT1G15730.1 GeneID:838142 KEGG:ath:AT1G15730
            TAIR:At1g15730 InParanoid:Q9LMR1 OMA:LIQSTHC PhylomeDB:Q9LMR1
            ProtClustDB:CLSN2679508 ArrayExpress:Q9LMR1 Genevestigator:Q9LMR1
            Uniprot:Q9LMR1
        Length = 448

 Score = 135 (52.6 bits), Expect = 2.9e-08, P = 2.9e-08
 Identities = 40/111 (36%), Positives = 53/111 (47%)

Query:     1 MASSLSTEMATTFLSFTARPQNPFAKIRTTVLPVLFKPRARNLSYKTMPSSTHSEFIAFK 60
             MA+ L  ++ATTFL+F     N     R     +        +S +T  SS +S  +   
Sbjct:     1 MATLLKLDIATTFLAFIVPRANTSLNHRFASARL----STATVSLRTKSSSFYSAALYSD 56

Query:    61 VPRPYRRFXXXXXXXXXXXXEDS-DLLTKIPPDNRIPATIITGFLGSGKNT 110
               R +               ED  D+ ++I PDNRIPATIITGFLGSGK T
Sbjct:    57 SRRRFHSAVASDSSLAVVDDEDIFDVASEILPDNRIPATIITGFLGSGKTT 107


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.132   0.380    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      113       101   0.00091  102 3  11 22  0.38    30
                                                     29  0.47    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  452 (48 KB)
  Total size of DFA:  86 KB (2067 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.02u 0.14s 9.16t   Elapsed:  00:00:00
  Total cpu time:  9.02u 0.14s 9.16t   Elapsed:  00:00:00
  Start:  Fri May 10 00:14:47 2013   End:  Fri May 10 00:14:47 2013

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