BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033696
(113 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P53729|YN8H_YEAST Uncharacterized protein YNR029C OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=YNR029C PE=1 SV=1
Length = 429
Score = 33.9 bits (76), Expect = 0.28, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 87 TKIPPDNRIPATIITGFLGSGKNT 110
T + RIP +IITG+LGSGK+T
Sbjct: 63 TDVHEKKRIPVSIITGYLGSGKST 86
>sp|P29937|COBW_PSEDE Protein CobW OS=Pseudomonas denitrificans GN=cobW PE=3 SV=3
Length = 354
Score = 33.9 bits (76), Expect = 0.29, Method: Composition-based stats.
Identities = 13/17 (76%), Positives = 16/17 (94%)
Query: 94 RIPATIITGFLGSGKNT 110
+IPAT+ITGFLG+GK T
Sbjct: 10 KIPATVITGFLGAGKTT 26
>sp|Q4V339|CBWD6_HUMAN COBW domain-containing protein 6 OS=Homo sapiens GN=CBWD6 PE=2 SV=1
Length = 395
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
Query: 77 TTASEDSDLLTKIPPDNRIPATIITGFLGSGKNT 110
TT SE+ + K +IP TIITG+LG+GK T
Sbjct: 27 TTQSEEEE---KSGLGAKIPVTIITGYLGAGKTT 57
>sp|Q5RIA9|CBWD5_HUMAN COBW domain-containing protein 5 OS=Homo sapiens GN=CBWD5 PE=2 SV=1
Length = 395
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
Query: 77 TTASEDSDLLTKIPPDNRIPATIITGFLGSGKNT 110
TT SE+ + K +IP TIITG+LG+GK T
Sbjct: 27 TTQSEEEE---KSGLGAKIPVTIITGYLGAGKTT 57
>sp|Q5JTY5|CBWD3_HUMAN COBW domain-containing protein 3 OS=Homo sapiens GN=CBWD3 PE=2 SV=1
Length = 395
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
Query: 77 TTASEDSDLLTKIPPDNRIPATIITGFLGSGKNT 110
TT SE+ + K +IP TIITG+LG+GK T
Sbjct: 27 TTQSEEEE---KSGLGAKIPVTIITGYLGAGKTT 57
>sp|Q8IUF1|CBWD2_HUMAN COBW domain-containing protein 2 OS=Homo sapiens GN=CBWD2 PE=1 SV=1
Length = 395
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
Query: 77 TTASEDSDLLTKIPPDNRIPATIITGFLGSGKNT 110
TT SE+ + K +IP TIITG+LG+GK T
Sbjct: 27 TTQSEEEE---KSGLGAKIPVTIITGYLGAGKTT 57
>sp|Q9BRT8|CBWD1_HUMAN COBW domain-containing protein 1 OS=Homo sapiens GN=CBWD1 PE=1 SV=1
Length = 395
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
Query: 77 TTASEDSDLLTKIPPDNRIPATIITGFLGSGKNT 110
TT SE+ + K +IP TIITG+LG+GK T
Sbjct: 27 TTQSEEEE---KSGLGAKIPVTIITGYLGAGKTT 57
>sp|Q8VEH6|CBWD1_MOUSE COBW domain-containing protein 1 OS=Mus musculus GN=Cbwd1 PE=2 SV=1
Length = 393
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 6/30 (20%)
Query: 81 EDSDLLTKIPPDNRIPATIITGFLGSGKNT 110
E+ D +TKIP TI+TG+LG+GK T
Sbjct: 32 ENLDFITKIP------VTIVTGYLGAGKTT 55
>sp|Q99MB4|CBWD1_RAT COBW domain-containing protein 1 OS=Rattus norvegicus GN=Cbwd1 PE=2
SV=2
Length = 394
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 11/17 (64%), Positives = 15/17 (88%)
Query: 94 RIPATIITGFLGSGKNT 110
+IP TI+TG+LG+GK T
Sbjct: 40 KIPVTIVTGYLGAGKTT 56
>sp|Q9HZQ2|COBW_PSEAE Protein CobW OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 /
1C / PRS 101 / LMG 12228) GN=cobW PE=3 SV=1
Length = 375
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 11/17 (64%), Positives = 15/17 (88%)
Query: 94 RIPATIITGFLGSGKNT 110
++P TI+TGFLG+GK T
Sbjct: 31 KLPVTIVTGFLGAGKTT 47
>sp|Q06108|RGC1_YEAST Regulator of the glycerol channel 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RGC1 PE=1 SV=1
Length = 1083
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 49 PSSTHSEFIAFKVPRPYRRFTASASAAATTASEDSDLLTKIPPD 92
P ST S ++P+ YR F S+ A+ S DS L + PD
Sbjct: 22 PGSTRSSSRNLELPKNYRSFGGSSDELASMYSADSQYLMDMIPD 65
>sp|Q8VC98|PKHA4_MOUSE Pleckstrin homology domain-containing family A member 4 OS=Mus
musculus GN=Plekha4 PE=2 SV=1
Length = 588
Score = 29.6 bits (65), Expect = 5.2, Method: Composition-based stats.
Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 4/101 (3%)
Query: 14 LSFTARPQNPFAKIRTTVLPVLFKPRARNLSYKTMP-SSTHSEFIAFKVPRPYRRFTASA 72
+SF ARP P ++I P+ + P+ + LS +P SE + PR + T
Sbjct: 263 ISFPARPHTPLSRIDVRP-PLDWGPQRQTLSRPPIPRRGPSSEAGGERPPRSPQPRTPEQ 321
Query: 73 SAAATTASEDSDLLTKIPPDNRIPATIITGFLGSGKNTGSA 113
+T A+ S ++PP R P T + L G SA
Sbjct: 322 RTQSTQATSGSSTYLQLPP--RPPGTQASMILLPGPPVDSA 360
>sp|Q9VE00|C12A4_DROME Probable cytochrome P450 12a4, mitochondrial OS=Drosophila
melanogaster GN=Cyp12a4 PE=2 SV=2
Length = 536
Score = 29.3 bits (64), Expect = 6.7, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 23 PFAKIRTTVLPVLFKPRARNLSYKTMPSSTHSEFI 57
P+ RT V PVL +P+ L YK M S + EF+
Sbjct: 153 PWGDFRTVVNPVLMQPKNVRLYYKKM-SQVNQEFV 186
>sp|P31521|P47K_PSECL 47 kDa protein OS=Pseudomonas chlororaphis PE=3 SV=1
Length = 419
Score = 29.3 bits (64), Expect = 7.7, Method: Composition-based stats.
Identities = 10/17 (58%), Positives = 15/17 (88%)
Query: 94 RIPATIITGFLGSGKNT 110
R+P T+++GFLG+GK T
Sbjct: 9 RLPVTVLSGFLGAGKTT 25
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.126 0.354
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,992,698
Number of Sequences: 539616
Number of extensions: 1249470
Number of successful extensions: 3554
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 3538
Number of HSP's gapped (non-prelim): 27
length of query: 113
length of database: 191,569,459
effective HSP length: 81
effective length of query: 32
effective length of database: 147,860,563
effective search space: 4731538016
effective search space used: 4731538016
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)