Query 033696
Match_columns 113
No_of_seqs 105 out of 107
Neff 2.8
Searched_HMMs 46136
Date Fri Mar 29 05:14:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033696.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033696hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2743 Cobalamin synthesis pr 99.0 8.2E-11 1.8E-15 100.1 0.9 33 81-113 43-75 (391)
2 TIGR00073 hypB hydrogenase acc 97.8 4.4E-06 9.6E-11 61.9 -0.2 23 91-113 18-40 (207)
3 COG3910 Predicted ATPase [Gene 96.8 0.00042 9.1E-09 56.6 0.5 21 92-112 34-54 (233)
4 PF13555 AAA_29: P-loop contai 96.7 0.00041 8.8E-09 45.8 0.2 17 96-112 24-40 (62)
5 cd01878 HflX HflX subfamily. 96.6 0.00055 1.2E-08 49.2 0.0 23 91-113 37-59 (204)
6 cd03238 ABC_UvrA The excision 96.6 0.00052 1.1E-08 51.4 -0.3 17 97-113 23-39 (176)
7 PF07693 KAP_NTPase: KAP famil 96.5 0.00054 1.2E-08 52.4 -0.2 17 97-113 22-38 (325)
8 cd03283 ABC_MutS-like MutS-lik 96.5 0.00062 1.3E-08 51.2 -0.1 18 96-113 26-43 (199)
9 cd03280 ABC_MutS2 MutS2 homolo 96.4 0.00072 1.6E-08 49.9 -0.1 18 96-113 29-46 (200)
10 cd03243 ABC_MutS_homologs The 96.4 0.00085 1.8E-08 49.5 -0.1 18 96-113 30-47 (202)
11 cd03225 ABC_cobalt_CbiO_domain 96.1 0.0012 2.7E-08 48.1 -0.3 18 96-113 28-45 (211)
12 cd03226 ABC_cobalt_CbiO_domain 96.1 0.0013 2.8E-08 48.0 -0.3 18 96-113 27-44 (205)
13 PRK10463 hydrogenase nickel in 96.1 0.0014 3.1E-08 53.8 -0.1 22 92-113 101-122 (290)
14 cd03268 ABC_BcrA_bacitracin_re 96.1 0.0013 2.8E-08 48.0 -0.3 18 96-113 27-44 (208)
15 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.1 0.0013 2.9E-08 48.1 -0.3 18 96-113 31-48 (218)
16 TIGR00960 3a0501s02 Type II (G 96.1 0.0014 3E-08 48.1 -0.3 18 96-113 30-47 (216)
17 cd03269 ABC_putative_ATPase Th 96.0 0.0015 3.2E-08 47.8 -0.3 17 97-113 28-44 (210)
18 cd03293 ABC_NrtD_SsuB_transpor 96.0 0.0015 3.2E-08 48.2 -0.3 17 97-113 32-48 (220)
19 cd03258 ABC_MetN_methionine_tr 96.0 0.0015 3.2E-08 48.5 -0.3 17 97-113 33-49 (233)
20 cd03265 ABC_DrrA DrrA is the A 96.0 0.0015 3.3E-08 48.1 -0.3 18 96-113 27-44 (220)
21 cd03261 ABC_Org_Solvent_Resist 96.0 0.0016 3.4E-08 48.6 -0.3 18 96-113 27-44 (235)
22 COG1136 SalX ABC-type antimicr 96.0 0.0017 3.6E-08 51.9 -0.3 18 96-113 32-49 (226)
23 cd03256 ABC_PhnC_transporter A 96.0 0.0017 3.6E-08 48.1 -0.3 17 97-113 29-45 (241)
24 cd03259 ABC_Carb_Solutes_like 95.9 0.0017 3.7E-08 47.5 -0.3 17 97-113 28-44 (213)
25 TIGR03608 L_ocin_972_ABC putat 95.9 0.0017 3.7E-08 47.0 -0.3 17 97-113 26-42 (206)
26 TIGR02211 LolD_lipo_ex lipopro 95.9 0.0018 3.8E-08 47.6 -0.3 19 95-113 31-49 (221)
27 TIGR01978 sufC FeS assembly AT 95.9 0.0019 4E-08 48.0 -0.2 17 97-113 28-44 (243)
28 cd03292 ABC_FtsE_transporter F 95.9 0.0018 4E-08 47.1 -0.3 18 96-113 28-45 (214)
29 TIGR02673 FtsE cell division A 95.9 0.0018 4E-08 47.3 -0.3 17 97-113 30-46 (214)
30 cd03257 ABC_NikE_OppD_transpor 95.9 0.0018 4E-08 47.4 -0.3 18 96-113 32-49 (228)
31 cd03266 ABC_NatA_sodium_export 95.9 0.0019 4.2E-08 47.3 -0.2 17 97-113 33-49 (218)
32 cd03224 ABC_TM1139_LivF_branch 95.9 0.0019 4.1E-08 47.3 -0.3 18 96-113 27-44 (222)
33 cd03227 ABC_Class2 ABC-type Cl 95.9 0.0021 4.5E-08 46.1 -0.1 17 96-112 22-38 (162)
34 cd03235 ABC_Metallic_Cations A 95.8 0.002 4.3E-08 47.2 -0.3 18 96-113 26-43 (213)
35 PRK10584 putative ABC transpor 95.8 0.002 4.4E-08 47.6 -0.3 18 96-113 37-54 (228)
36 PRK14242 phosphate transporter 95.8 0.0021 4.6E-08 48.4 -0.3 18 96-113 33-50 (253)
37 PRK11629 lolD lipoprotein tran 95.8 0.0021 4.6E-08 47.9 -0.3 17 97-113 37-53 (233)
38 TIGR02315 ABC_phnC phosphonate 95.8 0.0021 4.7E-08 47.8 -0.3 17 97-113 30-46 (243)
39 cd03260 ABC_PstB_phosphate_tra 95.8 0.0022 4.9E-08 47.3 -0.3 18 96-113 27-44 (227)
40 cd03263 ABC_subfamily_A The AB 95.8 0.0023 4.9E-08 47.0 -0.3 17 97-113 30-46 (220)
41 cd03264 ABC_drug_resistance_li 95.8 0.002 4.4E-08 47.1 -0.5 17 97-113 27-43 (211)
42 cd03219 ABC_Mj1267_LivG_branch 95.8 0.0023 5E-08 47.4 -0.3 18 96-113 27-44 (236)
43 cd03250 ABCC_MRP_domain1 Domai 95.7 0.0024 5.1E-08 46.6 -0.2 18 96-113 32-49 (204)
44 cd03279 ABC_sbcCD SbcCD and ot 95.7 0.0029 6.2E-08 47.2 0.2 19 95-113 28-46 (213)
45 cd03297 ABC_ModC_molybdenum_tr 95.7 0.0023 5.1E-08 47.0 -0.3 20 93-113 22-41 (214)
46 cd03218 ABC_YhbG The ABC trans 95.7 0.0024 5.2E-08 47.2 -0.3 17 97-113 28-44 (232)
47 cd03301 ABC_MalK_N The N-termi 95.7 0.0024 5.2E-08 46.6 -0.3 18 96-113 27-44 (213)
48 PF13191 AAA_16: AAA ATPase do 95.7 0.0019 4.1E-08 44.7 -0.8 22 92-113 21-42 (185)
49 cd03254 ABCC_Glucan_exporter_l 95.7 0.0025 5.3E-08 47.0 -0.3 17 97-113 31-47 (229)
50 TIGR02324 CP_lyasePhnL phospho 95.7 0.0025 5.4E-08 47.0 -0.3 18 96-113 35-52 (224)
51 cd03251 ABCC_MsbA MsbA is an e 95.7 0.0025 5.4E-08 47.2 -0.3 18 96-113 29-46 (234)
52 cd03262 ABC_HisP_GlnQ_permease 95.7 0.0025 5.4E-08 46.4 -0.3 18 96-113 27-44 (213)
53 PRK13541 cytochrome c biogenes 95.7 0.0025 5.5E-08 46.4 -0.3 17 97-113 28-44 (195)
54 cd03253 ABCC_ATM1_transporter 95.7 0.0026 5.6E-08 47.1 -0.3 18 96-113 28-45 (236)
55 cd03272 ABC_SMC3_euk Eukaryoti 95.6 0.0026 5.7E-08 47.3 -0.3 16 97-112 25-40 (243)
56 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.6 0.0027 5.9E-08 45.0 -0.3 18 96-113 27-44 (144)
57 PRK10247 putative ABC transpor 95.6 0.0028 6E-08 47.4 -0.3 18 96-113 34-51 (225)
58 cd03298 ABC_ThiQ_thiamine_tran 95.6 0.0028 6E-08 46.4 -0.3 18 96-113 25-42 (211)
59 cd03215 ABC_Carb_Monos_II This 95.6 0.0028 6E-08 45.9 -0.3 18 96-113 27-44 (182)
60 cd01130 VirB11-like_ATPase Typ 95.6 0.0028 6E-08 46.4 -0.3 17 97-113 27-43 (186)
61 PRK11248 tauB taurine transpor 95.6 0.0029 6.3E-08 48.6 -0.3 17 97-113 29-45 (255)
62 cd03247 ABCC_cytochrome_bd The 95.6 0.0029 6.3E-08 45.5 -0.3 17 97-113 30-46 (178)
63 TIGR02323 CP_lyasePhnK phospho 95.6 0.003 6.4E-08 47.6 -0.3 18 96-113 30-47 (253)
64 PRK14273 phosphate ABC transpo 95.6 0.0031 6.6E-08 47.7 -0.3 18 96-113 34-51 (254)
65 PRK14274 phosphate ABC transpo 95.6 0.003 6.6E-08 47.9 -0.3 17 97-113 40-56 (259)
66 cd03267 ABC_NatA_like Similar 95.5 0.0031 6.6E-08 47.6 -0.3 18 96-113 48-65 (236)
67 PRK11124 artP arginine transpo 95.5 0.003 6.6E-08 47.2 -0.3 18 96-113 29-46 (242)
68 TIGR03015 pepcterm_ATPase puta 95.5 0.0031 6.8E-08 47.0 -0.2 20 94-113 42-61 (269)
69 TIGR03410 urea_trans_UrtE urea 95.5 0.0031 6.7E-08 46.7 -0.3 18 96-113 27-44 (230)
70 cd03223 ABCD_peroxisomal_ALDP 95.5 0.0031 6.7E-08 45.4 -0.3 17 97-113 29-45 (166)
71 cd03240 ABC_Rad50 The catalyti 95.5 0.0033 7.2E-08 47.2 -0.1 18 96-113 23-40 (204)
72 PRK13649 cbiO cobalt transport 95.5 0.0032 6.9E-08 48.5 -0.3 17 97-113 35-51 (280)
73 TIGR00972 3a0107s01c2 phosphat 95.5 0.0032 6.9E-08 47.4 -0.3 17 97-113 29-45 (247)
74 TIGR01189 ccmA heme ABC export 95.5 0.0032 6.9E-08 45.9 -0.3 20 94-113 25-44 (198)
75 PRK10908 cell division protein 95.5 0.0032 6.9E-08 46.5 -0.3 19 95-113 28-46 (222)
76 cd03296 ABC_CysA_sulfate_impor 95.5 0.0032 7E-08 47.1 -0.3 18 96-113 29-46 (239)
77 PRK14247 phosphate ABC transpo 95.5 0.0032 7E-08 47.3 -0.3 17 97-113 31-47 (250)
78 TIGR00150 HI0065_YjeE ATPase, 95.5 0.0032 7E-08 46.3 -0.3 17 96-112 23-39 (133)
79 cd03246 ABCC_Protease_Secretio 95.5 0.0033 7.1E-08 45.2 -0.3 18 96-113 29-46 (173)
80 cd03228 ABCC_MRP_Like The MRP 95.5 0.0033 7.2E-08 45.1 -0.3 18 96-113 29-46 (171)
81 cd03249 ABC_MTABC3_MDL1_MDL2 M 95.5 0.0033 7.1E-08 46.8 -0.3 18 96-113 30-47 (238)
82 cd03281 ABC_MSH5_euk MutS5 hom 95.4 0.0037 7.9E-08 47.6 -0.2 19 95-113 29-47 (213)
83 cd03252 ABCC_Hemolysin The ABC 95.4 0.0035 7.6E-08 46.6 -0.3 18 96-113 29-46 (237)
84 PRK13543 cytochrome c biogenes 95.4 0.0035 7.5E-08 46.5 -0.3 17 97-113 39-55 (214)
85 cd03245 ABCC_bacteriocin_expor 95.4 0.0035 7.6E-08 46.0 -0.3 18 96-113 31-48 (220)
86 PRK13539 cytochrome c biogenes 95.4 0.0035 7.7E-08 46.2 -0.3 18 96-113 29-46 (207)
87 cd03232 ABC_PDR_domain2 The pl 95.4 0.0037 7.9E-08 45.8 -0.2 18 96-113 34-51 (192)
88 cd03229 ABC_Class3 This class 95.4 0.0036 7.7E-08 45.2 -0.3 17 97-113 28-44 (178)
89 PRK10895 lipopolysaccharide AB 95.4 0.0036 7.8E-08 46.8 -0.3 18 96-113 30-47 (241)
90 PRK10744 pstB phosphate transp 95.4 0.0036 7.8E-08 47.7 -0.3 18 96-113 40-57 (260)
91 PRK11264 putative amino-acid A 95.4 0.0037 7.9E-08 46.9 -0.3 17 97-113 31-47 (250)
92 PRK13645 cbiO cobalt transport 95.4 0.0037 7.9E-08 48.6 -0.3 17 97-113 39-55 (289)
93 PRK13632 cbiO cobalt transport 95.4 0.0037 7.9E-08 48.2 -0.3 18 96-113 36-53 (271)
94 PRK14241 phosphate transporter 95.4 0.0037 8E-08 47.5 -0.3 18 96-113 31-48 (258)
95 PRK13638 cbiO cobalt transport 95.4 0.0037 8E-08 48.0 -0.3 17 97-113 29-45 (271)
96 PRK13538 cytochrome c biogenes 95.4 0.0037 8E-08 45.9 -0.3 18 96-113 28-45 (204)
97 TIGR03864 PQQ_ABC_ATP ABC tran 95.4 0.0038 8.1E-08 46.7 -0.3 17 97-113 29-45 (236)
98 PRK09493 glnQ glutamine ABC tr 95.4 0.0038 8.3E-08 46.6 -0.3 18 96-113 28-45 (240)
99 COG0419 SbcC ATPase involved i 95.4 0.0051 1.1E-07 55.6 0.4 21 92-112 22-42 (908)
100 cd03294 ABC_Pro_Gly_Bertaine T 95.4 0.0039 8.4E-08 48.1 -0.3 18 96-113 51-68 (269)
101 PRK14261 phosphate ABC transpo 95.4 0.0039 8.3E-08 47.1 -0.3 17 97-113 34-50 (253)
102 cd03244 ABCC_MRP_domain2 Domai 95.3 0.0039 8.5E-08 45.8 -0.3 17 97-113 32-48 (221)
103 PRK13540 cytochrome c biogenes 95.3 0.0039 8.5E-08 45.6 -0.3 19 95-113 27-45 (200)
104 PRK11831 putative ABC transpor 95.3 0.0039 8.6E-08 47.9 -0.3 18 96-113 34-51 (269)
105 PRK11300 livG leucine/isoleuci 95.3 0.0041 8.9E-08 46.7 -0.2 18 96-113 32-49 (255)
106 cd03234 ABCG_White The White s 95.3 0.004 8.8E-08 46.2 -0.2 17 97-113 35-51 (226)
107 PRK14262 phosphate ABC transpo 95.3 0.004 8.7E-08 46.8 -0.3 17 97-113 31-47 (250)
108 PRK14267 phosphate ABC transpo 95.3 0.004 8.6E-08 46.9 -0.3 17 97-113 32-48 (253)
109 PRK03695 vitamin B12-transport 95.3 0.004 8.7E-08 47.4 -0.3 17 97-113 24-40 (248)
110 PRK14245 phosphate ABC transpo 95.3 0.0041 8.8E-08 46.9 -0.3 18 96-113 30-47 (250)
111 cd03230 ABC_DR_subfamily_A Thi 95.3 0.0041 8.8E-08 44.7 -0.3 17 97-113 28-44 (173)
112 PRK14239 phosphate transporter 95.3 0.0041 8.8E-08 46.7 -0.3 17 97-113 33-49 (252)
113 PRK14253 phosphate ABC transpo 95.3 0.0041 8.8E-08 46.7 -0.3 17 97-113 31-47 (249)
114 PRK14269 phosphate ABC transpo 95.3 0.0041 8.9E-08 46.9 -0.3 18 96-113 29-46 (246)
115 cd03216 ABC_Carb_Monos_I This 95.3 0.0041 8.9E-08 44.7 -0.3 19 95-113 26-44 (163)
116 PF13245 AAA_19: Part of AAA d 95.3 0.0052 1.1E-07 40.7 0.2 18 94-111 9-26 (76)
117 cd03295 ABC_OpuCA_Osmoprotecti 95.3 0.0042 9.1E-08 46.6 -0.3 17 97-113 29-45 (242)
118 PRK14256 phosphate ABC transpo 95.3 0.0042 9.1E-08 46.9 -0.3 18 96-113 31-48 (252)
119 PRK14248 phosphate ABC transpo 95.3 0.0043 9.3E-08 47.5 -0.3 17 97-113 49-65 (268)
120 cd03237 ABC_RNaseL_inhibitor_d 95.3 0.0043 9.3E-08 47.9 -0.3 18 96-113 26-43 (246)
121 cd03233 ABC_PDR_domain1 The pl 95.3 0.0043 9.3E-08 45.9 -0.3 17 97-113 35-51 (202)
122 cd00267 ABC_ATPase ABC (ATP-bi 95.3 0.0043 9.3E-08 43.5 -0.3 18 96-113 26-43 (157)
123 TIGR03740 galliderm_ABC gallid 95.3 0.0043 9.4E-08 45.9 -0.3 19 95-113 26-44 (223)
124 cd03248 ABCC_TAP TAP, the Tran 95.3 0.0043 9.3E-08 45.8 -0.3 18 96-113 41-58 (226)
125 CHL00131 ycf16 sulfate ABC tra 95.3 0.0043 9.4E-08 46.5 -0.3 18 96-113 34-51 (252)
126 TIGR03411 urea_trans_UrtD urea 95.2 0.0044 9.6E-08 46.2 -0.3 17 97-113 30-46 (242)
127 PRK14251 phosphate ABC transpo 95.2 0.0045 9.7E-08 46.6 -0.3 17 97-113 32-48 (251)
128 PRK14270 phosphate ABC transpo 95.2 0.0045 9.7E-08 46.7 -0.3 18 96-113 31-48 (251)
129 PRK14268 phosphate ABC transpo 95.2 0.0046 1E-07 47.0 -0.3 17 97-113 40-56 (258)
130 cd03275 ABC_SMC1_euk Eukaryoti 95.2 0.0059 1.3E-07 46.6 0.3 17 96-112 23-39 (247)
131 PRK14235 phosphate transporter 95.2 0.0047 1E-07 47.5 -0.3 18 96-113 46-63 (267)
132 PRK11231 fecE iron-dicitrate t 95.2 0.0048 1E-07 46.8 -0.3 18 96-113 29-46 (255)
133 cd03222 ABC_RNaseL_inhibitor T 95.2 0.0043 9.4E-08 46.5 -0.5 18 96-113 26-43 (177)
134 PRK13648 cbiO cobalt transport 95.2 0.0048 1E-07 47.4 -0.3 18 96-113 36-53 (269)
135 PRK14265 phosphate ABC transpo 95.2 0.0048 1E-07 47.8 -0.3 17 97-113 48-64 (274)
136 PRK11247 ssuB aliphatic sulfon 95.2 0.0048 1E-07 47.9 -0.3 18 96-113 39-56 (257)
137 TIGR03873 F420-0_ABC_ATP propo 95.2 0.0049 1.1E-07 46.7 -0.3 17 97-113 29-45 (256)
138 PRK11614 livF leucine/isoleuci 95.2 0.0048 1E-07 46.0 -0.3 17 97-113 33-49 (237)
139 PRK14255 phosphate ABC transpo 95.1 0.005 1.1E-07 46.3 -0.3 17 97-113 33-49 (252)
140 cd03290 ABCC_SUR1_N The SUR do 95.1 0.005 1.1E-07 45.4 -0.3 18 96-113 28-45 (218)
141 PRK14249 phosphate ABC transpo 95.1 0.005 1.1E-07 46.4 -0.3 17 97-113 32-48 (251)
142 cd03214 ABC_Iron-Siderophores_ 95.1 0.0051 1.1E-07 44.5 -0.3 19 95-113 25-43 (180)
143 TIGR01277 thiQ thiamine ABC tr 95.1 0.005 1.1E-07 45.3 -0.3 18 96-113 25-42 (213)
144 PRK09580 sufC cysteine desulfu 95.1 0.005 1.1E-07 45.9 -0.3 18 96-113 28-45 (248)
145 TIGR00750 lao LAO/AO transport 95.1 0.0067 1.4E-07 48.1 0.4 22 91-112 30-51 (300)
146 PRK13548 hmuV hemin importer A 95.1 0.0051 1.1E-07 47.0 -0.3 17 97-113 30-46 (258)
147 cd03278 ABC_SMC_barmotin Barmo 95.1 0.0048 1E-07 46.2 -0.4 17 97-113 24-40 (197)
148 TIGR03005 ectoine_ehuA ectoine 95.1 0.0052 1.1E-07 46.4 -0.3 18 96-113 27-44 (252)
149 PRK10418 nikD nickel transport 95.1 0.0052 1.1E-07 46.6 -0.3 18 96-113 30-47 (254)
150 PRK14237 phosphate transporter 95.1 0.0053 1.2E-07 47.2 -0.3 17 97-113 48-64 (267)
151 PRK10253 iron-enterobactin tra 95.1 0.0053 1.1E-07 47.0 -0.3 18 96-113 34-51 (265)
152 PRK14266 phosphate ABC transpo 95.1 0.0053 1.2E-07 46.1 -0.3 18 96-113 30-47 (250)
153 COG4133 CcmA ABC-type transpor 95.1 0.0065 1.4E-07 49.1 0.2 16 97-112 30-45 (209)
154 PRK09544 znuC high-affinity zi 95.1 0.0054 1.2E-07 47.3 -0.3 18 96-113 31-48 (251)
155 PRK14250 phosphate ABC transpo 95.1 0.0054 1.2E-07 46.3 -0.3 18 96-113 30-47 (241)
156 cd03231 ABC_CcmA_heme_exporter 95.1 0.0054 1.2E-07 45.0 -0.3 19 95-113 26-44 (201)
157 COG1120 FepC ABC-type cobalami 95.1 0.0055 1.2E-07 49.8 -0.3 18 96-113 29-46 (258)
158 PRK15112 antimicrobial peptide 95.1 0.0054 1.2E-07 47.1 -0.3 17 97-113 41-57 (267)
159 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 95.0 0.0055 1.2E-07 46.0 -0.3 17 97-113 50-66 (224)
160 cd03217 ABC_FeS_Assembly ABC-t 95.0 0.0055 1.2E-07 45.1 -0.3 18 96-113 27-44 (200)
161 PRK15056 manganese/iron transp 95.0 0.0056 1.2E-07 47.2 -0.3 18 96-113 34-51 (272)
162 PRK14244 phosphate ABC transpo 95.0 0.0056 1.2E-07 46.2 -0.3 17 97-113 33-49 (251)
163 PRK14240 phosphate transporter 95.0 0.0056 1.2E-07 46.0 -0.3 17 97-113 31-47 (250)
164 cd03369 ABCC_NFT1 Domain 2 of 95.0 0.0056 1.2E-07 44.8 -0.3 18 96-113 35-52 (207)
165 PRK10771 thiQ thiamine transpo 95.0 0.0057 1.2E-07 45.6 -0.3 18 96-113 26-43 (232)
166 PRK14259 phosphate ABC transpo 95.0 0.0058 1.2E-07 47.2 -0.3 17 97-113 41-57 (269)
167 PF02463 SMC_N: RecF/RecN/SMC 95.0 0.0059 1.3E-07 44.8 -0.2 16 97-112 26-41 (220)
168 cd03213 ABCG_EPDR ABCG transpo 95.0 0.006 1.3E-07 44.8 -0.2 18 96-113 36-53 (194)
169 COG0802 Predicted ATPase or ki 95.0 0.0087 1.9E-07 45.6 0.6 17 96-112 26-42 (149)
170 PRK14252 phosphate ABC transpo 95.0 0.006 1.3E-07 46.6 -0.3 17 97-113 44-60 (265)
171 cd03284 ABC_MutS1 MutS1 homolo 94.9 0.0069 1.5E-07 46.2 -0.0 18 96-113 31-48 (216)
172 PRK11701 phnK phosphonate C-P 94.9 0.0062 1.3E-07 46.2 -0.3 18 96-113 33-50 (258)
173 TIGR01288 nodI ATP-binding ABC 94.9 0.0063 1.4E-07 47.8 -0.3 18 96-113 31-48 (303)
174 PRK14238 phosphate transporter 94.9 0.0063 1.4E-07 47.0 -0.3 18 96-113 51-68 (271)
175 PRK10575 iron-hydroxamate tran 94.9 0.0063 1.4E-07 46.6 -0.3 17 97-113 39-55 (265)
176 cd03271 ABC_UvrA_II The excisi 94.9 0.0071 1.5E-07 48.2 -0.0 17 97-113 23-39 (261)
177 PRK14272 phosphate ABC transpo 94.9 0.0066 1.4E-07 45.5 -0.3 18 96-113 31-48 (252)
178 PRK13635 cbiO cobalt transport 94.9 0.0065 1.4E-07 47.3 -0.3 17 97-113 35-51 (279)
179 PRK10619 histidine/lysine/argi 94.9 0.0066 1.4E-07 46.1 -0.3 18 96-113 32-49 (257)
180 TIGR02633 xylG D-xylose ABC tr 94.8 0.0068 1.5E-07 50.3 -0.3 18 96-113 287-304 (500)
181 PRK14275 phosphate ABC transpo 94.8 0.0069 1.5E-07 47.4 -0.3 18 96-113 66-83 (286)
182 cd03300 ABC_PotA_N PotA is an 94.8 0.0069 1.5E-07 45.3 -0.3 17 97-113 28-44 (232)
183 cd03239 ABC_SMC_head The struc 94.8 0.0088 1.9E-07 44.3 0.3 17 96-112 23-39 (178)
184 PRK13547 hmuV hemin importer A 94.8 0.007 1.5E-07 47.4 -0.3 17 97-113 29-45 (272)
185 TIGR02769 nickel_nikE nickel i 94.8 0.007 1.5E-07 46.3 -0.3 18 96-113 38-55 (265)
186 PRK09984 phosphonate/organopho 94.8 0.0071 1.5E-07 46.0 -0.3 18 96-113 31-48 (262)
187 cd03236 ABC_RNaseL_inhibitor_d 94.8 0.0072 1.6E-07 47.1 -0.3 18 96-113 27-44 (255)
188 PRK14260 phosphate ABC transpo 94.8 0.0073 1.6E-07 46.0 -0.3 17 97-113 35-51 (259)
189 PRK10419 nikE nickel transport 94.7 0.0074 1.6E-07 46.5 -0.3 18 96-113 39-56 (268)
190 PRK13644 cbiO cobalt transport 94.7 0.0076 1.7E-07 46.7 -0.3 17 97-113 30-46 (274)
191 PRK14243 phosphate transporter 94.7 0.0077 1.7E-07 46.2 -0.3 18 96-113 37-54 (264)
192 PRK10938 putative molybdenum t 94.7 0.0077 1.7E-07 49.8 -0.3 18 96-113 30-47 (490)
193 PRK09700 D-allose transporter 94.7 0.008 1.7E-07 50.1 -0.3 17 97-113 291-307 (510)
194 PRK13633 cobalt transporter AT 94.7 0.008 1.7E-07 46.6 -0.3 17 97-113 38-54 (280)
195 PRK13652 cbiO cobalt transport 94.6 0.0081 1.7E-07 46.5 -0.3 17 97-113 32-48 (277)
196 PRK13641 cbiO cobalt transport 94.6 0.0081 1.8E-07 46.9 -0.3 17 97-113 35-51 (287)
197 PHA00547 hypothetical protein 94.6 0.01 2.2E-07 50.6 0.3 19 94-112 74-92 (337)
198 TIGR02524 dot_icm_DotB Dot/Icm 94.6 0.0085 1.8E-07 49.7 -0.3 19 95-113 134-152 (358)
199 cd03274 ABC_SMC4_euk Eukaryoti 94.6 0.0092 2E-07 45.2 -0.1 18 96-113 26-43 (212)
200 PRK13851 type IV secretion sys 94.6 0.0078 1.7E-07 50.0 -0.5 18 96-113 163-180 (344)
201 TIGR01420 pilT_fam pilus retra 94.6 0.0088 1.9E-07 48.5 -0.3 19 95-113 122-140 (343)
202 TIGR02982 heterocyst_DevA ABC 94.6 0.0087 1.9E-07 44.3 -0.3 18 96-113 32-49 (220)
203 PRK14271 phosphate ABC transpo 94.5 0.009 1.9E-07 46.5 -0.3 18 96-113 48-65 (276)
204 cd01129 PulE-GspE PulE/GspE Th 94.5 0.0093 2E-07 47.0 -0.2 19 95-113 80-98 (264)
205 TIGR03522 GldA_ABC_ATP gliding 94.5 0.0092 2E-07 47.0 -0.3 17 97-113 30-46 (301)
206 TIGR02142 modC_ABC molybdenum 94.5 0.0093 2E-07 48.3 -0.3 18 96-113 24-41 (354)
207 TIGR02788 VirB11 P-type DNA tr 94.5 0.0086 1.9E-07 47.8 -0.5 18 96-113 145-162 (308)
208 PF00437 T2SE: Type II/IV secr 94.5 0.0074 1.6E-07 46.0 -0.8 19 95-113 127-145 (270)
209 PRK13640 cbiO cobalt transport 94.5 0.0092 2E-07 46.5 -0.3 17 97-113 35-51 (282)
210 PRK14236 phosphate transporter 94.5 0.0093 2E-07 46.0 -0.3 18 96-113 52-69 (272)
211 TIGR00968 3a0106s01 sulfate AB 94.5 0.0094 2E-07 44.8 -0.3 17 97-113 28-44 (237)
212 TIGR03269 met_CoM_red_A2 methy 94.5 0.0095 2.1E-07 49.8 -0.3 18 96-113 27-44 (520)
213 cd03277 ABC_SMC5_euk Eukaryoti 94.5 0.012 2.6E-07 44.8 0.3 17 96-112 24-40 (213)
214 COG1119 ModF ABC-type molybden 94.5 0.0081 1.8E-07 49.6 -0.7 16 98-113 60-75 (257)
215 PRK00454 engB GTP-binding prot 94.4 0.012 2.5E-07 41.4 0.2 25 89-113 18-42 (196)
216 COG1131 CcmA ABC-type multidru 94.4 0.0099 2.1E-07 47.4 -0.3 17 97-113 33-49 (293)
217 PRK13833 conjugal transfer pro 94.4 0.0092 2E-07 49.3 -0.5 16 98-113 147-162 (323)
218 PRK14258 phosphate ABC transpo 94.4 0.0099 2.2E-07 45.4 -0.3 19 95-113 33-51 (261)
219 PRK09700 D-allose transporter 94.4 0.01 2.2E-07 49.5 -0.3 18 96-113 32-49 (510)
220 PRK13549 xylose transporter AT 94.4 0.01 2.2E-07 49.6 -0.3 17 97-113 290-306 (506)
221 PRK13549 xylose transporter AT 94.4 0.01 2.2E-07 49.6 -0.3 17 97-113 33-49 (506)
222 PRK13650 cbiO cobalt transport 94.4 0.01 2.2E-07 46.2 -0.3 18 96-113 34-51 (279)
223 PRK11144 modC molybdate transp 94.4 0.01 2.2E-07 48.1 -0.3 18 96-113 25-42 (352)
224 PRK13646 cbiO cobalt transport 94.4 0.01 2.2E-07 46.3 -0.3 17 97-113 35-51 (286)
225 PRK11000 maltose/maltodextrin 94.3 0.01 2.3E-07 48.6 -0.3 18 96-113 30-47 (369)
226 PRK10938 putative molybdenum t 94.3 0.011 2.3E-07 49.1 -0.3 17 97-113 288-304 (490)
227 PRK13546 teichoic acids export 94.3 0.011 2.3E-07 46.3 -0.3 18 96-113 51-68 (264)
228 PRK11153 metN DL-methionine tr 94.3 0.011 2.3E-07 47.9 -0.3 18 96-113 32-49 (343)
229 cd03242 ABC_RecF RecF is a rec 94.3 0.013 2.8E-07 45.5 0.2 17 96-112 22-38 (270)
230 PRK14254 phosphate ABC transpo 94.3 0.011 2.3E-07 46.4 -0.3 18 96-113 66-83 (285)
231 PRK13900 type IV secretion sys 94.3 0.01 2.2E-07 48.7 -0.4 17 97-113 162-178 (332)
232 PRK14263 phosphate ABC transpo 94.3 0.011 2.4E-07 45.6 -0.3 17 97-113 36-52 (261)
233 PRK10762 D-ribose transporter 94.2 0.011 2.5E-07 49.2 -0.3 17 97-113 32-48 (501)
234 PRK15439 autoinducer 2 ABC tra 94.2 0.012 2.5E-07 49.5 -0.3 18 96-113 38-55 (510)
235 cd03241 ABC_RecN RecN ATPase i 94.2 0.014 3E-07 45.5 0.2 17 96-112 22-38 (276)
236 cd03273 ABC_SMC2_euk Eukaryoti 94.2 0.015 3.2E-07 44.3 0.3 18 95-112 25-42 (251)
237 PRK10646 ADP-binding protein; 94.2 0.016 3.5E-07 43.7 0.5 16 97-112 30-45 (153)
238 COG0411 LivG ABC-type branched 94.2 0.022 4.7E-07 46.9 1.2 17 97-113 32-48 (250)
239 PRK09270 nucleoside triphospha 94.2 0.014 3.1E-07 44.0 0.1 21 92-112 30-50 (229)
240 PRK15064 ABC transporter ATP-b 94.2 0.012 2.7E-07 49.3 -0.2 17 97-113 29-45 (530)
241 TIGR03719 ABC_ABC_ChvD ATP-bin 94.1 0.013 2.7E-07 49.8 -0.2 17 97-113 33-49 (552)
242 COG1121 ZnuC ABC-type Mn/Zn tr 94.1 0.013 2.8E-07 47.7 -0.2 17 96-112 31-47 (254)
243 PRK13647 cbiO cobalt transport 94.1 0.012 2.6E-07 45.6 -0.3 17 97-113 33-49 (274)
244 cd03276 ABC_SMC6_euk Eukaryoti 94.1 0.016 3.4E-07 43.5 0.2 17 96-112 22-38 (198)
245 TIGR02782 TrbB_P P-type conjug 94.1 0.012 2.6E-07 47.4 -0.4 17 97-113 134-150 (299)
246 PRK10762 D-ribose transporter 94.1 0.013 2.7E-07 49.0 -0.3 17 97-113 280-296 (501)
247 PRK15064 ABC transporter ATP-b 94.1 0.013 2.8E-07 49.2 -0.3 17 97-113 347-363 (530)
248 PRK11288 araG L-arabinose tran 94.1 0.013 2.8E-07 48.9 -0.3 17 97-113 281-297 (501)
249 PRK11819 putative ABC transpor 94.1 0.013 2.9E-07 49.8 -0.2 17 97-113 35-51 (556)
250 PRK15439 autoinducer 2 ABC tra 94.1 0.013 2.9E-07 49.2 -0.2 18 96-113 290-307 (510)
251 TIGR03269 met_CoM_red_A2 methy 94.0 0.013 2.8E-07 49.0 -0.3 17 97-113 312-328 (520)
252 PRK15134 microcin C ABC transp 94.0 0.013 2.9E-07 49.1 -0.3 17 97-113 314-330 (529)
253 cd03291 ABCC_CFTR1 The CFTR su 93.9 0.014 3.1E-07 46.3 -0.3 17 97-113 65-81 (282)
254 TIGR02633 xylG D-xylose ABC tr 93.9 0.014 3.1E-07 48.4 -0.3 17 97-113 29-45 (500)
255 PRK10982 galactose/methyl gala 93.9 0.014 3.1E-07 48.4 -0.3 17 97-113 26-42 (491)
256 PRK13651 cobalt transporter AT 93.9 0.014 3.1E-07 46.6 -0.3 17 97-113 35-51 (305)
257 PRK13634 cbiO cobalt transport 93.9 0.014 3.1E-07 45.7 -0.3 17 97-113 35-51 (290)
258 PRK11288 araG L-arabinose tran 93.9 0.015 3.2E-07 48.6 -0.3 17 97-113 32-48 (501)
259 PRK13639 cbiO cobalt transport 93.9 0.015 3.2E-07 45.0 -0.3 17 97-113 30-46 (275)
260 PF01637 Arch_ATPase: Archaeal 93.9 0.012 2.6E-07 41.4 -0.7 20 94-113 19-38 (234)
261 TIGR00618 sbcc exonuclease Sbc 93.9 0.018 3.9E-07 52.8 0.2 17 96-112 27-43 (1042)
262 TIGR03185 DNA_S_dndD DNA sulfu 93.8 0.015 3.3E-07 50.8 -0.3 20 94-113 27-46 (650)
263 PRK14264 phosphate ABC transpo 93.8 0.015 3.3E-07 46.0 -0.3 18 96-113 72-89 (305)
264 PRK13642 cbiO cobalt transport 93.8 0.015 3.3E-07 45.0 -0.3 18 96-113 34-51 (277)
265 cd03288 ABCC_SUR2 The SUR doma 93.8 0.015 3.3E-07 44.3 -0.3 17 97-113 49-65 (257)
266 cd03282 ABC_MSH4_euk MutS4 hom 93.8 0.017 3.6E-07 44.0 -0.1 19 95-113 29-47 (204)
267 PRK15134 microcin C ABC transp 93.8 0.016 3.4E-07 48.7 -0.3 17 97-113 37-53 (529)
268 PRK14246 phosphate ABC transpo 93.8 0.016 3.4E-07 44.6 -0.3 18 96-113 37-54 (257)
269 cd03270 ABC_UvrA_I The excisio 93.7 0.019 4E-07 43.5 0.1 16 97-112 23-38 (226)
270 PRK13643 cbiO cobalt transport 93.7 0.016 3.4E-07 45.5 -0.4 17 97-113 34-50 (288)
271 TIGR03719 ABC_ABC_ChvD ATP-bin 93.7 0.017 3.6E-07 49.1 -0.3 17 97-113 350-366 (552)
272 PRK13637 cbiO cobalt transport 93.6 0.017 3.7E-07 45.2 -0.3 17 97-113 35-51 (287)
273 PRK13631 cbiO cobalt transport 93.6 0.017 3.8E-07 46.5 -0.3 17 97-113 54-70 (320)
274 cd03299 ABC_ModC_like Archeal 93.6 0.018 3.8E-07 43.3 -0.3 16 97-112 27-42 (235)
275 PRK10070 glycine betaine trans 93.6 0.016 3.5E-07 48.8 -0.5 17 97-113 56-72 (400)
276 PRK11819 putative ABC transpor 93.6 0.018 3.8E-07 49.0 -0.3 17 97-113 352-368 (556)
277 COG1126 GlnQ ABC-type polar am 93.6 0.022 4.7E-07 46.8 0.3 19 94-112 27-45 (240)
278 TIGR02525 plasmid_TraJ plasmid 93.6 0.019 4E-07 48.3 -0.2 17 97-113 151-167 (372)
279 PRK11650 ugpC glycerol-3-phosp 93.6 0.018 3.9E-07 47.2 -0.3 17 97-113 32-48 (356)
280 PLN02200 adenylate kinase fami 93.5 0.039 8.5E-07 42.8 1.5 16 96-111 44-59 (234)
281 PHA02562 46 endonuclease subun 93.5 0.022 4.8E-07 47.4 0.2 18 95-112 27-44 (562)
282 PRK13537 nodulation ABC transp 93.5 0.019 4.1E-07 45.7 -0.3 17 97-113 35-51 (306)
283 cd03285 ABC_MSH2_euk MutS2 hom 93.4 0.021 4.5E-07 43.8 -0.1 19 94-112 29-47 (222)
284 TIGR00554 panK_bact pantothena 93.4 0.025 5.4E-07 46.1 0.3 20 93-112 59-79 (290)
285 PRK10636 putative ABC transpor 93.4 0.02 4.3E-07 50.1 -0.3 18 96-113 339-356 (638)
286 TIGR03265 PhnT2 putative 2-ami 93.4 0.02 4.3E-07 46.9 -0.3 17 97-113 32-48 (353)
287 TIGR02168 SMC_prok_B chromosom 93.4 0.027 5.9E-07 49.2 0.5 17 96-112 24-40 (1179)
288 PRK10982 galactose/methyl gala 93.3 0.021 4.5E-07 47.5 -0.3 18 96-113 275-292 (491)
289 COG3950 Predicted ATP-binding 93.3 0.03 6.6E-07 49.2 0.7 17 96-112 25-41 (440)
290 TIGR02314 ABC_MetN D-methionin 93.3 0.021 4.6E-07 46.9 -0.3 17 97-113 33-49 (343)
291 PRK13636 cbiO cobalt transport 93.3 0.021 4.6E-07 44.5 -0.3 17 97-113 34-50 (283)
292 PRK11432 fbpC ferric transport 93.3 0.021 4.6E-07 46.8 -0.3 18 96-113 33-50 (351)
293 PRK13894 conjugal transfer ATP 93.3 0.02 4.3E-07 46.9 -0.5 18 96-113 149-166 (319)
294 PRK13536 nodulation factor exp 93.3 0.022 4.7E-07 46.5 -0.3 18 96-113 68-85 (340)
295 PRK02224 chromosome segregatio 93.2 0.026 5.7E-07 49.8 0.2 17 96-112 24-40 (880)
296 PRK09452 potA putrescine/sperm 93.2 0.022 4.8E-07 47.3 -0.3 17 97-113 42-58 (375)
297 TIGR03258 PhnT 2-aminoethylpho 93.2 0.023 4.9E-07 46.9 -0.3 17 97-113 33-49 (362)
298 PRK10851 sulfate/thiosulfate t 93.2 0.023 4.9E-07 46.6 -0.3 17 97-113 30-46 (353)
299 PRK11147 ABC transporter ATPas 93.1 0.023 5E-07 49.3 -0.3 17 97-113 347-363 (635)
300 PRK11147 ABC transporter ATPas 93.1 0.024 5.1E-07 49.3 -0.3 17 97-113 31-47 (635)
301 COG1122 CbiO ABC-type cobalt t 93.0 0.025 5.3E-07 44.7 -0.3 17 96-112 31-47 (235)
302 PRK06696 uridine kinase; Valid 93.0 0.042 9.1E-07 41.3 0.9 19 93-111 20-38 (223)
303 COG3839 MalK ABC-type sugar tr 92.9 0.026 5.7E-07 47.4 -0.2 17 97-113 31-47 (338)
304 TIGR02169 SMC_prok_A chromosom 92.9 0.032 7E-07 49.3 0.3 17 96-112 24-40 (1164)
305 PRK10636 putative ABC transpor 92.9 0.027 5.9E-07 49.2 -0.2 17 97-113 29-45 (638)
306 PRK00064 recF recombination pr 92.8 0.032 6.9E-07 45.7 0.1 17 96-112 24-40 (361)
307 PRK14079 recF recombination pr 92.8 0.032 7E-07 45.5 0.1 17 96-112 24-40 (349)
308 PRK09087 hypothetical protein; 92.8 0.029 6.2E-07 43.3 -0.2 19 95-113 44-62 (226)
309 KOG2373 Predicted mitochondria 92.7 0.052 1.1E-06 48.3 1.2 17 96-112 274-290 (514)
310 PRK12402 replication factor C 92.7 0.036 7.9E-07 42.5 0.2 20 93-112 34-53 (337)
311 TIGR02868 CydC thiol reductant 92.6 0.03 6.5E-07 46.6 -0.3 17 97-113 363-379 (529)
312 TIGR02533 type_II_gspE general 92.6 0.031 6.8E-07 48.2 -0.2 20 94-113 241-260 (486)
313 PRK11607 potG putrescine trans 92.6 0.03 6.6E-07 46.4 -0.3 17 97-113 47-63 (377)
314 PRK09536 btuD corrinoid ABC tr 92.6 0.029 6.4E-07 47.2 -0.4 18 96-113 30-47 (402)
315 TIGR00606 rad50 rad50. This fa 92.5 0.038 8.1E-07 52.2 0.2 18 95-112 28-45 (1311)
316 PRK14489 putative bifunctional 92.5 0.048 1E-06 44.7 0.8 20 93-112 203-222 (366)
317 COG4962 CpaF Flp pilus assembl 92.5 0.029 6.3E-07 48.1 -0.5 17 97-113 175-191 (355)
318 PRK10261 glutathione transport 92.4 0.034 7.4E-07 48.3 -0.3 17 97-113 352-368 (623)
319 TIGR02203 MsbA_lipidA lipid A 92.4 0.034 7.4E-07 46.4 -0.3 17 97-113 360-376 (571)
320 PRK09435 membrane ATPase/prote 92.3 0.035 7.5E-07 46.1 -0.3 20 93-112 54-73 (332)
321 PRK03846 adenylylsulfate kinas 92.3 0.049 1.1E-06 40.2 0.5 16 97-112 26-41 (198)
322 PLN03073 ABC transporter F fam 92.3 0.035 7.5E-07 50.0 -0.3 17 97-113 537-553 (718)
323 PRK06620 hypothetical protein; 92.2 0.036 7.8E-07 42.4 -0.3 18 96-113 45-62 (214)
324 PRK10261 glutathione transport 92.2 0.035 7.6E-07 48.2 -0.4 17 97-113 44-60 (623)
325 TIGR01069 mutS2 MutS2 family p 92.2 0.045 9.7E-07 49.9 0.2 19 95-113 322-340 (771)
326 PRK15093 antimicrobial peptide 92.2 0.037 8.1E-07 44.4 -0.3 17 97-113 35-51 (330)
327 PF03193 DUF258: Protein of un 92.1 0.032 7E-07 42.3 -0.7 18 96-113 36-53 (161)
328 TIGR00611 recf recF protein. A 92.1 0.047 1E-06 45.1 0.2 16 97-112 25-40 (365)
329 PRK01156 chromosome segregatio 92.0 0.048 1E-06 48.6 0.2 17 96-112 24-40 (895)
330 TIGR02857 CydD thiol reductant 92.0 0.04 8.7E-07 45.9 -0.3 18 96-113 349-366 (529)
331 TIGR03415 ABC_choXWV_ATP choli 92.0 0.04 8.6E-07 46.3 -0.3 17 97-113 52-68 (382)
332 PRK13409 putative ATPase RIL; 92.0 0.041 8.9E-07 48.2 -0.3 17 97-113 367-383 (590)
333 cd01858 NGP_1 NGP-1. Autoanti 92.0 0.041 8.9E-07 38.7 -0.2 18 96-113 102-120 (157)
334 PRK10246 exonuclease subunit S 91.9 0.055 1.2E-06 50.3 0.4 22 91-112 26-47 (1047)
335 PLN02165 adenylate isopentenyl 91.8 0.097 2.1E-06 44.1 1.8 21 91-111 39-59 (334)
336 PRK13657 cyclic beta-1,2-gluca 91.8 0.044 9.6E-07 46.4 -0.3 17 97-113 363-379 (588)
337 COG4148 ModC ABC-type molybdat 91.8 0.061 1.3E-06 46.3 0.5 21 93-113 22-42 (352)
338 COG2804 PulE Type II secretory 91.8 0.053 1.1E-06 48.3 0.2 20 93-112 256-275 (500)
339 COG4525 TauB ABC-type taurine 91.8 0.044 9.6E-07 45.5 -0.3 17 97-113 33-49 (259)
340 PRK11176 lipid transporter ATP 91.7 0.041 9E-07 46.2 -0.5 17 97-113 371-387 (582)
341 PRK10789 putative multidrug tr 91.7 0.046 9.9E-07 46.5 -0.3 17 97-113 343-359 (569)
342 PRK11058 GTPase HflX; Provisio 91.7 0.056 1.2E-06 45.8 0.2 22 92-113 194-215 (426)
343 PRK11022 dppD dipeptide transp 91.7 0.044 9.6E-07 44.2 -0.4 18 96-113 34-51 (326)
344 COG0410 LivF ABC-type branched 91.6 0.048 1E-06 44.6 -0.2 18 96-113 30-47 (237)
345 PLN03211 ABC transporter G-25; 91.6 0.049 1.1E-06 48.3 -0.2 17 97-113 96-112 (659)
346 TIGR00955 3a01204 The Eye Pigm 91.5 0.05 1.1E-06 47.3 -0.2 17 97-113 53-69 (617)
347 PRK13409 putative ATPase RIL; 91.5 0.049 1.1E-06 47.7 -0.3 17 97-113 101-117 (590)
348 PRK00440 rfc replication facto 91.5 0.057 1.2E-06 41.0 0.1 20 93-112 36-55 (319)
349 TIGR00635 ruvB Holliday juncti 91.5 0.059 1.3E-06 41.4 0.2 20 93-112 28-47 (305)
350 PRK03918 chromosome segregatio 91.4 0.058 1.3E-06 47.4 0.1 17 96-112 24-40 (880)
351 cd03289 ABCC_CFTR2 The CFTR su 91.4 0.051 1.1E-06 43.0 -0.3 18 96-113 31-48 (275)
352 PF00488 MutS_V: MutS domain V 91.4 0.055 1.2E-06 42.1 -0.1 18 95-112 43-60 (235)
353 PF13481 AAA_25: AAA domain; P 91.3 0.053 1.1E-06 38.5 -0.2 16 97-112 34-49 (193)
354 PRK15079 oligopeptide ABC tran 91.2 0.054 1.2E-06 44.0 -0.3 18 96-113 48-65 (331)
355 PRK08084 DNA replication initi 91.1 0.069 1.5E-06 40.9 0.2 18 95-112 45-62 (235)
356 PRK06893 DNA replication initi 91.1 0.06 1.3E-06 41.0 -0.2 19 94-112 38-56 (229)
357 PRK10436 hypothetical protein; 91.0 0.072 1.6E-06 46.0 0.3 19 94-112 217-235 (462)
358 TIGR03238 dnd_assoc_3 dnd syst 91.0 0.07 1.5E-06 47.6 0.2 18 96-113 33-50 (504)
359 TIGR00634 recN DNA repair prot 91.0 0.07 1.5E-06 46.0 0.2 17 96-112 23-39 (563)
360 COG3840 ThiQ ABC-type thiamine 91.0 0.063 1.4E-06 44.0 -0.1 17 97-113 27-43 (231)
361 PF13175 AAA_15: AAA ATPase do 91.0 0.06 1.3E-06 41.9 -0.3 18 96-113 23-40 (415)
362 PRK00098 GTPase RsgA; Reviewed 90.9 0.059 1.3E-06 42.9 -0.3 17 97-113 166-182 (298)
363 TIGR03878 thermo_KaiC_2 KaiC d 90.9 0.083 1.8E-06 41.2 0.5 15 97-111 38-52 (259)
364 PRK11174 cysteine/glutathione 90.9 0.061 1.3E-06 45.4 -0.3 17 97-113 378-394 (588)
365 PRK10522 multidrug transporter 90.9 0.061 1.3E-06 45.4 -0.3 17 97-113 351-367 (547)
366 PRK11308 dppF dipeptide transp 90.9 0.061 1.3E-06 43.5 -0.3 17 97-113 43-59 (327)
367 COG1116 TauB ABC-type nitrate/ 90.8 0.062 1.4E-06 44.0 -0.3 17 97-113 31-47 (248)
368 TIGR02538 type_IV_pilB type IV 90.8 0.076 1.6E-06 46.3 0.2 19 94-112 315-333 (564)
369 PRK14257 phosphate ABC transpo 90.7 0.066 1.4E-06 43.4 -0.3 17 97-113 110-126 (329)
370 PRK04841 transcriptional regul 90.6 0.086 1.9E-06 45.7 0.4 20 93-112 30-49 (903)
371 TIGR01194 cyc_pep_trnsptr cycl 90.6 0.068 1.5E-06 45.5 -0.3 18 96-113 369-386 (555)
372 TIGR02204 MsbA_rel ABC transpo 90.5 0.069 1.5E-06 44.7 -0.3 17 97-113 368-384 (576)
373 COG0467 RAD55 RecA-superfamily 90.5 0.098 2.1E-06 40.0 0.6 16 96-111 24-39 (260)
374 KOG0061 Transporter, ABC super 90.5 0.069 1.5E-06 47.2 -0.3 18 96-113 57-74 (613)
375 PRK13764 ATPase; Provisional 90.5 0.066 1.4E-06 48.1 -0.5 17 97-113 259-275 (602)
376 TIGR01192 chvA glucan exporter 90.4 0.071 1.5E-06 45.7 -0.3 18 96-113 362-379 (585)
377 TIGR03156 GTP_HflX GTP-binding 90.4 0.09 2E-06 43.3 0.3 22 92-113 186-207 (351)
378 COG3842 PotA ABC-type spermidi 90.4 0.073 1.6E-06 45.0 -0.2 18 96-113 32-49 (352)
379 TIGR01842 type_I_sec_PrtD type 90.4 0.073 1.6E-06 44.8 -0.3 17 97-113 346-362 (544)
380 PRK09473 oppD oligopeptide tra 90.3 0.067 1.4E-06 43.3 -0.5 18 96-113 43-60 (330)
381 TIGR03499 FlhF flagellar biosy 90.2 0.092 2E-06 41.6 0.2 17 96-112 195-211 (282)
382 COG4559 ABC-type hemin transpo 90.2 0.082 1.8E-06 44.0 -0.1 18 96-113 28-45 (259)
383 PRK05439 pantothenate kinase; 90.1 0.14 3E-06 42.4 1.2 20 92-111 82-102 (311)
384 PRK11160 cysteine/glutathione 90.1 0.079 1.7E-06 45.2 -0.3 17 97-113 368-384 (574)
385 cd03287 ABC_MSH3_euk MutS3 hom 90.1 0.082 1.8E-06 41.1 -0.2 20 94-113 30-49 (222)
386 TIGR03796 NHPM_micro_ABC1 NHPM 90.1 0.08 1.7E-06 45.9 -0.3 17 97-113 507-523 (710)
387 TIGR03797 NHPM_micro_ABC2 NHPM 90.0 0.082 1.8E-06 45.8 -0.3 17 97-113 481-497 (686)
388 TIGR02236 recomb_radA DNA repa 90.0 0.11 2.5E-06 40.7 0.5 17 95-111 95-111 (310)
389 TIGR00958 3a01208 Conjugate Tr 90.0 0.082 1.8E-06 46.5 -0.3 17 97-113 509-525 (711)
390 PRK09361 radB DNA repair and r 89.8 0.12 2.7E-06 38.2 0.6 16 97-112 25-40 (225)
391 TIGR03375 type_I_sec_LssB type 89.8 0.086 1.9E-06 45.7 -0.3 17 97-113 493-509 (694)
392 PRK13545 tagH teichoic acids e 89.8 0.086 1.9E-06 47.2 -0.3 18 96-113 51-68 (549)
393 PLN03140 ABC transporter G fam 89.8 0.09 1.9E-06 51.0 -0.2 17 97-113 193-209 (1470)
394 PRK08533 flagellar accessory p 89.8 0.12 2.6E-06 39.7 0.6 15 97-111 26-40 (230)
395 PRK00411 cdc6 cell division co 89.7 0.11 2.4E-06 41.2 0.3 21 93-113 53-73 (394)
396 cd01854 YjeQ_engC YjeQ/EngC. 89.7 0.088 1.9E-06 41.7 -0.3 18 96-113 162-179 (287)
397 PRK10790 putative multidrug tr 89.7 0.09 2E-06 44.5 -0.3 17 97-113 369-385 (592)
398 TIGR00954 3a01203 Peroxysomal 89.6 0.092 2E-06 46.2 -0.3 17 97-113 480-496 (659)
399 PTZ00202 tuzin; Provisional 89.5 0.12 2.5E-06 46.8 0.3 16 97-112 288-303 (550)
400 PRK08903 DnaA regulatory inact 89.5 0.099 2.1E-06 38.8 -0.2 18 95-112 42-59 (227)
401 TIGR00956 3a01205 Pleiotropic 89.5 0.098 2.1E-06 50.2 -0.2 17 97-113 89-105 (1394)
402 TIGR02858 spore_III_AA stage I 89.5 0.1 2.2E-06 41.9 -0.1 22 92-113 108-129 (270)
403 TIGR00157 ribosome small subun 89.4 0.099 2.1E-06 40.7 -0.2 17 97-113 122-138 (245)
404 COG1106 Predicted ATPases [Gen 89.3 0.13 2.8E-06 44.0 0.4 18 95-112 22-39 (371)
405 PRK10869 recombination and rep 89.2 0.12 2.7E-06 45.1 0.2 17 96-112 23-39 (553)
406 PLN02840 tRNA dimethylallyltra 89.2 0.22 4.7E-06 43.2 1.7 19 93-111 19-37 (421)
407 COG0630 VirB11 Type IV secreto 89.1 0.096 2.1E-06 42.7 -0.5 17 97-113 145-161 (312)
408 PLN03140 ABC transporter G fam 89.0 0.11 2.3E-06 50.5 -0.3 17 97-113 908-924 (1470)
409 TIGR00956 3a01205 Pleiotropic 89.0 0.11 2.3E-06 49.9 -0.3 17 97-113 791-807 (1394)
410 PRK12288 GTPase RsgA; Reviewed 89.0 0.095 2.1E-06 43.4 -0.6 17 97-113 207-223 (347)
411 smart00053 DYNc Dynamin, GTPas 88.9 0.12 2.7E-06 41.0 0.0 22 92-113 23-44 (240)
412 TIGR03420 DnaA_homol_Hda DnaA 88.9 0.14 3E-06 37.3 0.2 20 93-112 36-55 (226)
413 TIGR03819 heli_sec_ATPase heli 88.9 0.11 2.3E-06 43.0 -0.4 18 96-113 179-196 (340)
414 PRK14974 cell division protein 88.8 0.16 3.5E-06 42.2 0.7 20 93-112 138-157 (336)
415 TIGR01193 bacteriocin_ABC ABC- 88.7 0.11 2.4E-06 45.2 -0.5 17 97-113 502-518 (708)
416 KOG0926 DEAH-box RNA helicase 88.7 0.24 5.3E-06 47.7 1.7 20 93-112 269-288 (1172)
417 TIGR01448 recD_rel helicase, p 88.6 0.12 2.7E-06 46.4 -0.2 17 96-112 339-355 (720)
418 PRK06067 flagellar accessory p 88.6 0.17 3.7E-06 37.9 0.6 17 96-112 26-42 (234)
419 COG4555 NatA ABC-type Na+ tran 88.4 0.2 4.4E-06 41.4 1.0 17 96-112 29-45 (245)
420 PRK00080 ruvB Holliday junctio 88.3 0.15 3.1E-06 40.5 0.1 20 93-112 49-68 (328)
421 TIGR02881 spore_V_K stage V sp 88.3 0.24 5.1E-06 38.1 1.2 20 93-112 40-59 (261)
422 PRK10535 macrolide transporter 88.3 0.13 2.8E-06 45.1 -0.3 17 97-113 36-52 (648)
423 COG0488 Uup ATPase components 88.3 0.12 2.6E-06 45.5 -0.4 16 98-113 351-366 (530)
424 PLN03073 ABC transporter F fam 88.3 0.13 2.9E-06 46.3 -0.2 17 97-113 205-221 (718)
425 PRK10416 signal recognition pa 88.1 0.19 4.1E-06 41.1 0.6 19 94-112 113-131 (318)
426 TIGR01846 type_I_sec_HlyB type 88.1 0.13 2.9E-06 44.7 -0.3 17 97-113 485-501 (694)
427 PRK04301 radA DNA repair and r 88.0 0.21 4.5E-06 39.8 0.8 17 95-111 102-118 (317)
428 COG1118 CysA ABC-type sulfate/ 88.0 0.17 3.8E-06 43.5 0.3 16 97-112 30-45 (345)
429 PRK12289 GTPase RsgA; Reviewed 87.9 0.13 2.9E-06 42.8 -0.4 17 97-113 174-190 (352)
430 COG2884 FtsE Predicted ATPase 87.9 0.11 2.3E-06 42.6 -0.9 17 97-113 30-46 (223)
431 cd01122 GP4d_helicase GP4d_hel 87.9 0.16 3.6E-06 38.3 0.1 19 94-112 29-47 (271)
432 TIGR00630 uvra excinuclease AB 87.9 0.15 3.3E-06 47.7 -0.1 17 97-113 635-651 (924)
433 PLN03025 replication factor C 87.9 0.24 5.2E-06 39.3 1.0 21 92-112 31-51 (319)
434 PLN03046 D-glycerate 3-kinase; 87.8 0.18 3.8E-06 44.7 0.3 18 95-112 211-229 (460)
435 PLN02348 phosphoribulokinase 87.7 0.24 5.3E-06 42.7 1.0 17 96-112 50-66 (395)
436 PRK13342 recombination factor 87.4 0.25 5.5E-06 40.8 1.0 21 92-112 33-53 (413)
437 PRK08099 bifunctional DNA-bind 87.4 0.17 3.6E-06 42.7 -0.1 20 93-112 217-236 (399)
438 PLN02674 adenylate kinase 87.3 0.27 5.9E-06 39.3 1.0 18 94-111 30-47 (244)
439 PF03215 Rad17: Rad17 cell cyc 87.3 0.19 4.2E-06 44.1 0.2 18 95-112 45-62 (519)
440 KOG2355 Predicted ABC-type tra 87.3 0.2 4.4E-06 42.1 0.3 16 98-113 43-58 (291)
441 TIGR01271 CFTR_protein cystic 87.3 0.16 3.5E-06 48.9 -0.3 17 97-113 454-470 (1490)
442 PRK03003 GTP-binding protein D 87.3 0.19 4.1E-06 42.3 0.1 21 93-113 36-56 (472)
443 TIGR03877 thermo_KaiC_1 KaiC d 87.2 0.23 4.9E-06 37.8 0.5 17 95-111 21-37 (237)
444 PRK05537 bifunctional sulfate 87.2 0.21 4.5E-06 44.0 0.4 15 97-111 394-408 (568)
445 TIGR02768 TraA_Ti Ti-type conj 87.2 0.17 3.6E-06 45.8 -0.3 18 96-113 369-386 (744)
446 PRK08154 anaerobic benzoate ca 87.1 0.27 5.8E-06 39.4 0.9 23 89-111 127-149 (309)
447 TIGR02928 orc1/cdc6 family rep 87.1 0.2 4.4E-06 39.2 0.2 19 94-112 39-57 (365)
448 KOG0962 DNA repair protein RAD 87.0 0.2 4.3E-06 49.1 0.1 18 95-112 27-44 (1294)
449 COG1125 OpuBA ABC-type proline 86.8 0.2 4.3E-06 42.7 -0.0 17 96-112 28-44 (309)
450 PTZ00243 ABC transporter; Prov 86.7 0.18 3.9E-06 49.0 -0.3 17 97-113 688-704 (1560)
451 COG4604 CeuD ABC-type enteroch 86.7 0.22 4.7E-06 41.4 0.2 18 95-112 27-44 (252)
452 TIGR00416 sms DNA repair prote 86.7 0.21 4.6E-06 42.7 0.1 16 97-112 96-111 (454)
453 PTZ00035 Rad51 protein; Provis 86.6 0.24 5.3E-06 40.7 0.4 18 95-112 118-135 (337)
454 PRK09866 hypothetical protein; 86.6 0.19 4E-06 46.9 -0.3 18 96-113 70-87 (741)
455 PRK00409 recombination and DNA 86.4 0.22 4.7E-06 45.5 0.1 18 95-112 327-344 (782)
456 PLN02772 guanylate kinase 86.4 0.28 6.1E-06 42.4 0.7 32 82-113 120-153 (398)
457 COG4619 ABC-type uncharacteriz 86.4 0.18 3.8E-06 41.2 -0.5 17 97-113 31-47 (223)
458 TIGR02238 recomb_DMC1 meiotic 86.3 0.33 7.1E-06 39.7 1.0 15 97-111 98-112 (313)
459 PRK06851 hypothetical protein; 86.3 0.19 4.2E-06 42.6 -0.3 18 95-112 30-47 (367)
460 cd01849 YlqF_related_GTPase Yl 86.1 0.26 5.7E-06 34.7 0.3 21 93-113 98-118 (155)
461 PRK04863 mukB cell division pr 86.1 0.21 4.6E-06 49.1 -0.2 18 96-113 28-45 (1486)
462 TIGR03881 KaiC_arch_4 KaiC dom 86.0 0.3 6.5E-06 36.1 0.6 17 96-112 21-37 (229)
463 PLN02748 tRNA dimethylallyltra 86.0 0.48 1E-05 41.4 1.9 20 92-111 19-38 (468)
464 PRK05973 replicative DNA helic 85.8 0.28 6.1E-06 39.1 0.4 18 94-111 63-80 (237)
465 TIGR01447 recD exodeoxyribonuc 85.8 0.21 4.6E-06 44.2 -0.3 18 95-112 160-177 (586)
466 TIGR02655 circ_KaiC circadian 85.8 0.29 6.4E-06 41.6 0.5 16 96-111 22-37 (484)
467 COG1134 TagH ABC-type polysacc 85.7 0.17 3.6E-06 41.7 -0.9 14 100-113 58-71 (249)
468 PLN02796 D-glycerate 3-kinase 85.7 0.21 4.6E-06 42.3 -0.3 16 97-112 102-117 (347)
469 PRK14722 flhF flagellar biosyn 85.6 0.27 5.8E-06 41.8 0.2 17 96-112 138-154 (374)
470 PRK04328 hypothetical protein; 85.6 0.31 6.7E-06 37.7 0.5 15 97-111 25-39 (249)
471 PLN03187 meiotic recombination 85.4 0.36 7.9E-06 40.3 0.9 16 96-111 127-142 (344)
472 PRK04220 2-phosphoglycerate ki 85.4 0.38 8.2E-06 40.0 1.0 18 94-111 90-108 (301)
473 TIGR01526 nadR_NMN_Atrans nico 85.4 0.25 5.3E-06 40.3 -0.1 19 95-113 162-180 (325)
474 PRK09183 transposase/IS protei 85.3 0.23 5E-06 39.0 -0.3 17 96-112 103-119 (259)
475 COG1162 Predicted GTPases [Gen 85.3 0.27 5.9E-06 41.2 0.1 17 97-113 166-182 (301)
476 PRK10875 recD exonuclease V su 85.3 0.27 5.8E-06 44.1 0.0 18 95-112 167-184 (615)
477 COG2805 PilT Tfp pilus assembl 85.1 0.36 7.8E-06 41.7 0.8 21 92-112 122-142 (353)
478 TIGR00064 ftsY signal recognit 85.0 0.35 7.6E-06 38.5 0.6 20 93-112 70-89 (272)
479 COG4674 Uncharacterized ABC-ty 85.0 0.41 9E-06 39.7 1.0 17 97-113 33-49 (249)
480 cd01857 HSR1_MMR1 HSR1/MMR1. 84.8 0.23 5.1E-06 34.5 -0.4 17 97-113 85-101 (141)
481 PLN02318 phosphoribulokinase/u 84.8 0.28 6.1E-06 45.2 -0.1 20 93-112 63-82 (656)
482 PF05496 RuvB_N: Holliday junc 84.7 0.36 7.9E-06 39.3 0.6 20 92-111 47-66 (233)
483 PRK14721 flhF flagellar biosyn 84.7 0.26 5.7E-06 42.4 -0.2 17 96-112 192-208 (420)
484 COG1117 PstB ABC-type phosphat 84.7 0.32 7E-06 40.4 0.3 17 96-112 34-50 (253)
485 COG3451 VirB4 Type IV secretor 84.7 0.24 5.2E-06 45.6 -0.5 20 94-113 435-454 (796)
486 TIGR00957 MRP_assoc_pro multi 84.4 0.27 5.9E-06 47.4 -0.3 17 97-113 666-682 (1522)
487 TIGR02239 recomb_RAD51 DNA rep 84.4 0.46 1E-05 38.7 1.0 20 93-112 94-113 (316)
488 PLN03232 ABC transporter C fam 84.2 0.28 6.1E-06 47.3 -0.3 17 97-113 645-661 (1495)
489 COG2262 HflX GTPases [General 84.2 0.31 6.8E-06 42.7 -0.0 26 88-113 185-210 (411)
490 COG1195 RecF Recombinational D 84.1 0.35 7.5E-06 41.4 0.2 17 96-112 24-40 (363)
491 TIGR03348 VI_IcmF type VI secr 84.1 0.34 7.4E-06 45.8 0.2 21 93-113 109-129 (1169)
492 PRK00349 uvrA excinuclease ABC 84.0 0.3 6.6E-06 45.9 -0.2 17 97-113 637-653 (943)
493 cd03286 ABC_MSH6_euk MutS6 hom 84.0 0.37 8.1E-06 37.4 0.3 19 94-112 29-47 (218)
494 PRK13853 type IV secretion sys 83.7 0.35 7.5E-06 43.7 0.1 20 94-113 425-444 (789)
495 PLN02459 probable adenylate ki 83.5 0.62 1.3E-05 38.0 1.4 15 97-111 31-45 (261)
496 TIGR01663 PNK-3'Pase polynucle 83.4 0.44 9.6E-06 42.1 0.6 19 93-111 367-385 (526)
497 PRK15494 era GTPase Era; Provi 83.4 0.36 7.9E-06 39.2 0.1 21 93-113 50-70 (339)
498 PRK13898 type IV secretion sys 83.3 0.37 8.1E-06 43.3 0.1 20 94-113 445-464 (800)
499 PRK10536 hypothetical protein; 83.2 0.5 1.1E-05 38.9 0.8 17 95-111 74-90 (262)
500 COG1101 PhnK ABC-type uncharac 83.2 0.37 8.1E-06 40.3 0.1 17 97-113 34-50 (263)
No 1
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=99.00 E-value=8.2e-11 Score=100.14 Aligned_cols=33 Identities=52% Similarity=0.762 Sum_probs=30.5
Q ss_pred cccccccCCCCCCCCceEEEecccCCCccCCCC
Q 033696 81 EDSDLLTKIPPDNRIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 81 ~~s~~~~~~~~~~riPvTIiTGfLGsGKtTLLn 113 (113)
+++++.+...++++|||||||||||||||||||
T Consensus 43 e~~~~~~~~~~~~rIPvtIITGyLGaGKtTLLn 75 (391)
T KOG2743|consen 43 EEEDVVTKSSLGARIPVTIITGYLGAGKTTLLN 75 (391)
T ss_pred cccccccccCCCCccceEEEEecccCChHHHHH
Confidence 556888999999999999999999999999986
No 2
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=97.79 E-value=4.4e-06 Score=61.89 Aligned_cols=23 Identities=22% Similarity=0.120 Sum_probs=20.3
Q ss_pred CCCCCceEEEecccCCCccCCCC
Q 033696 91 PDNRIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 91 ~~~riPvTIiTGfLGsGKtTLLn 113 (113)
.+..+|++.++||+|||||||++
T Consensus 18 ~~~~~~~i~~~G~~gsGKTTli~ 40 (207)
T TIGR00073 18 DKHGLVVLNFMSSPGSGKTTLIE 40 (207)
T ss_pred hhcCcEEEEEECCCCCCHHHHHH
Confidence 34689999999999999999974
No 3
>COG3910 Predicted ATPase [General function prediction only]
Probab=96.77 E-value=0.00042 Score=56.57 Aligned_cols=21 Identities=52% Similarity=0.564 Sum_probs=19.2
Q ss_pred CCCCceEEEecccCCCccCCC
Q 033696 92 DNRIPATIITGFLGSGKNTGS 112 (113)
Q Consensus 92 ~~riPvTIiTGfLGsGKtTLL 112 (113)
+=+-|||+|+|-.|+||+|||
T Consensus 34 eF~apIT~i~GENGsGKSTLL 54 (233)
T COG3910 34 EFRAPITFITGENGSGKSTLL 54 (233)
T ss_pred cccCceEEEEcCCCccHHHHH
Confidence 457899999999999999997
No 4
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.73 E-value=0.00041 Score=45.76 Aligned_cols=17 Identities=53% Similarity=0.520 Sum_probs=15.7
Q ss_pred ceEEEecccCCCccCCC
Q 033696 96 PATIITGFLGSGKNTGS 112 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLL 112 (113)
++|+|+|..||||||||
T Consensus 24 ~~tli~G~nGsGKSTll 40 (62)
T PF13555_consen 24 DVTLITGPNGSGKSTLL 40 (62)
T ss_pred cEEEEECCCCCCHHHHH
Confidence 38999999999999986
No 5
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=96.58 E-value=0.00055 Score=49.19 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.5
Q ss_pred CCCCCceEEEecccCCCccCCCC
Q 033696 91 PDNRIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 91 ~~~riPvTIiTGfLGsGKtTLLn 113 (113)
.++.+|.++|.|..|+|||||||
T Consensus 37 ~~~~~~~I~iiG~~g~GKStLl~ 59 (204)
T cd01878 37 KRSGIPTVALVGYTNAGKSTLFN 59 (204)
T ss_pred hhcCCCeEEEECCCCCCHHHHHH
Confidence 35778999999999999999985
No 6
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.56 E-value=0.00052 Score=51.39 Aligned_cols=17 Identities=41% Similarity=0.558 Sum_probs=15.7
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..|||||||||
T Consensus 23 ~~~l~G~nG~GKSTLl~ 39 (176)
T cd03238 23 LVVVTGVSGSGKSTLVN 39 (176)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 68899999999999985
No 7
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.54 E-value=0.00054 Score=52.40 Aligned_cols=17 Identities=29% Similarity=0.223 Sum_probs=15.2
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
+.-|.|.||||||++||
T Consensus 22 ~IgL~G~WGsGKSs~l~ 38 (325)
T PF07693_consen 22 VIGLYGEWGSGKSSFLN 38 (325)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 67799999999999975
No 8
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=96.50 E-value=0.00062 Score=51.25 Aligned_cols=18 Identities=39% Similarity=0.244 Sum_probs=16.4
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
=+++|||..|+||||||+
T Consensus 26 ~~~~ltGpNg~GKSTllr 43 (199)
T cd03283 26 NGILITGSNMSGKSTFLR 43 (199)
T ss_pred cEEEEECCCCCChHHHHH
Confidence 589999999999999974
No 9
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.44 E-value=0.00072 Score=49.89 Aligned_cols=18 Identities=28% Similarity=0.278 Sum_probs=16.3
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-+++|||+.|+||||||+
T Consensus 29 ~~~~ltG~Ng~GKStll~ 46 (200)
T cd03280 29 RVLVITGPNAGGKTVTLK 46 (200)
T ss_pred eEEEEECCCCCChHHHHH
Confidence 589999999999999973
No 10
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.37 E-value=0.00085 Score=49.45 Aligned_cols=18 Identities=33% Similarity=0.170 Sum_probs=16.3
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
=+++|||..|+||||||+
T Consensus 30 ~~~~l~G~Ng~GKStll~ 47 (202)
T cd03243 30 RLLLITGPNMGGKSTYLR 47 (202)
T ss_pred eEEEEECCCCCccHHHHH
Confidence 489999999999999974
No 11
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.14 E-value=0.0012 Score=48.08 Aligned_cols=18 Identities=39% Similarity=0.348 Sum_probs=15.9
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|.|..||||||||+
T Consensus 28 ~~~~l~G~nGsGKSTLl~ 45 (211)
T cd03225 28 EFVLIVGPNGSGKSTLLR 45 (211)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 378999999999999974
No 12
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.11 E-value=0.0013 Score=48.05 Aligned_cols=18 Identities=33% Similarity=0.366 Sum_probs=16.1
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|.|..||||||||+
T Consensus 27 e~~~i~G~nGsGKSTLl~ 44 (205)
T cd03226 27 EIIALTGKNGAGKTTLAK 44 (205)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 388999999999999974
No 13
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.11 E-value=0.0014 Score=53.84 Aligned_cols=22 Identities=23% Similarity=0.128 Sum_probs=20.0
Q ss_pred CCCCceEEEecccCCCccCCCC
Q 033696 92 DNRIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 92 ~~riPvTIiTGfLGsGKtTLLn 113 (113)
.+++.++-|+|++||||||||+
T Consensus 101 ~~~~~~v~l~G~pGsGKTTLl~ 122 (290)
T PRK10463 101 ARKQLVLNLVSSPGSGKTTLLT 122 (290)
T ss_pred hcCCeEEEEECCCCCCHHHHHH
Confidence 5779999999999999999974
No 14
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=96.11 E-value=0.0013 Score=47.99 Aligned_cols=18 Identities=28% Similarity=0.176 Sum_probs=16.1
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|.|..||||||||+
T Consensus 27 ~~~~i~G~nGsGKSTLl~ 44 (208)
T cd03268 27 EIYGFLGPNGAGKTTTMK 44 (208)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 478999999999999974
No 15
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.09 E-value=0.0013 Score=48.12 Aligned_cols=18 Identities=39% Similarity=0.303 Sum_probs=15.9
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|.|..||||||||+
T Consensus 31 ~~~~l~G~nGsGKSTLl~ 48 (218)
T cd03255 31 EFVAIVGPSGSGKSTLLN 48 (218)
T ss_pred CEEEEEcCCCCCHHHHHH
Confidence 378999999999999974
No 16
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.06 E-value=0.0014 Score=48.08 Aligned_cols=18 Identities=28% Similarity=0.375 Sum_probs=16.0
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|.|..||||||||+
T Consensus 30 e~~~i~G~nGsGKSTLl~ 47 (216)
T TIGR00960 30 EMVFLVGHSGAGKSTFLK 47 (216)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 478999999999999974
No 17
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.03 E-value=0.0015 Score=47.76 Aligned_cols=17 Identities=29% Similarity=0.214 Sum_probs=15.3
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 28 ~~~i~G~nGsGKSTLl~ 44 (210)
T cd03269 28 IFGLLGPNGAGKTTTIR 44 (210)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 68899999999999974
No 18
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.03 E-value=0.0015 Score=48.20 Aligned_cols=17 Identities=29% Similarity=0.260 Sum_probs=15.5
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 32 ~~~i~G~nGsGKSTLl~ 48 (220)
T cd03293 32 FVALVGPSGCGKSTLLR 48 (220)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 68899999999999974
No 19
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.03 E-value=0.0015 Score=48.46 Aligned_cols=17 Identities=35% Similarity=0.223 Sum_probs=15.5
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 33 ~~~l~G~nGsGKSTLl~ 49 (233)
T cd03258 33 IFGIIGRSGAGKSTLIR 49 (233)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 78899999999999974
No 20
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.01 E-value=0.0015 Score=48.14 Aligned_cols=18 Identities=28% Similarity=0.196 Sum_probs=15.9
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|.|..||||||||+
T Consensus 27 e~~~i~G~nGsGKSTLl~ 44 (220)
T cd03265 27 EIFGLLGPNGAGKTTTIK 44 (220)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 478899999999999974
No 21
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.00 E-value=0.0016 Score=48.55 Aligned_cols=18 Identities=39% Similarity=0.290 Sum_probs=15.9
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
=++.|.|..||||||||+
T Consensus 27 e~~~l~G~nGsGKSTLl~ 44 (235)
T cd03261 27 EILAIIGPSGSGKSTLLR 44 (235)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 368999999999999974
No 22
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.97 E-value=0.0017 Score=51.87 Aligned_cols=18 Identities=39% Similarity=0.303 Sum_probs=16.2
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
=.+.|.|..|||||||||
T Consensus 32 e~vaI~GpSGSGKSTLLn 49 (226)
T COG1136 32 EFVAIVGPSGSGKSTLLN 49 (226)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 378899999999999986
No 23
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.96 E-value=0.0017 Score=48.14 Aligned_cols=17 Identities=29% Similarity=0.268 Sum_probs=15.5
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 29 ~~~i~G~nGsGKSTLl~ 45 (241)
T cd03256 29 FVALIGPSGAGKSTLLR 45 (241)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 68899999999999974
No 24
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.95 E-value=0.0017 Score=47.55 Aligned_cols=17 Identities=29% Similarity=0.202 Sum_probs=15.4
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 28 ~~~i~G~nGsGKSTLl~ 44 (213)
T cd03259 28 FLALLGPSGCGKTTLLR 44 (213)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 68899999999999974
No 25
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=95.95 E-value=0.0017 Score=47.02 Aligned_cols=17 Identities=41% Similarity=0.311 Sum_probs=15.4
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|+|..||||||||+
T Consensus 26 ~~~i~G~nGsGKSTLl~ 42 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLN 42 (206)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 68899999999999974
No 26
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=95.93 E-value=0.0018 Score=47.58 Aligned_cols=19 Identities=37% Similarity=0.244 Sum_probs=16.5
Q ss_pred CceEEEecccCCCccCCCC
Q 033696 95 IPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 95 iPvTIiTGfLGsGKtTLLn 113 (113)
=-++.|.|..||||||||+
T Consensus 31 G~~~~i~G~nGsGKSTLl~ 49 (221)
T TIGR02211 31 GEIVAIVGSSGSGKSTLLH 49 (221)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3478999999999999974
No 27
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=95.91 E-value=0.0019 Score=47.95 Aligned_cols=17 Identities=47% Similarity=0.407 Sum_probs=15.6
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 28 ~~~i~G~nGsGKSTLl~ 44 (243)
T TIGR01978 28 IHAIMGPNGSGKSTLSK 44 (243)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 78999999999999974
No 28
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=95.91 E-value=0.0018 Score=47.13 Aligned_cols=18 Identities=28% Similarity=0.292 Sum_probs=15.8
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|.|..||||||||+
T Consensus 28 ~~~~i~G~nGsGKSTLl~ 45 (214)
T cd03292 28 EFVFLVGPSGAGKSTLLK 45 (214)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 378899999999999974
No 29
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=95.90 E-value=0.0018 Score=47.26 Aligned_cols=17 Identities=35% Similarity=0.335 Sum_probs=15.5
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 30 ~~~l~G~nGsGKSTLl~ 46 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLK 46 (214)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 78899999999999974
No 30
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=95.90 E-value=0.0018 Score=47.40 Aligned_cols=18 Identities=33% Similarity=0.294 Sum_probs=16.0
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|.|..||||||||+
T Consensus 32 e~~~i~G~nGsGKSTLl~ 49 (228)
T cd03257 32 ETLGLVGESGSGKSTLAR 49 (228)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 478999999999999974
No 31
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=95.89 E-value=0.0019 Score=47.27 Aligned_cols=17 Identities=35% Similarity=0.317 Sum_probs=15.3
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|+|..||||||||+
T Consensus 33 ~~~i~G~nGsGKSTLl~ 49 (218)
T cd03266 33 VTGLLGPNGAGKTTTLR 49 (218)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 57899999999999974
No 32
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=95.89 E-value=0.0019 Score=47.32 Aligned_cols=18 Identities=28% Similarity=0.250 Sum_probs=16.1
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|.|..||||||||+
T Consensus 27 e~~~i~G~nGsGKSTLl~ 44 (222)
T cd03224 27 EIVALLGRNGAGKTTLLK 44 (222)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 478999999999999974
No 33
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=95.87 E-value=0.0021 Score=46.13 Aligned_cols=17 Identities=59% Similarity=0.538 Sum_probs=15.7
Q ss_pred ceEEEecccCCCccCCC
Q 033696 96 PATIITGFLGSGKNTGS 112 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLL 112 (113)
-+++|||.+||||||+|
T Consensus 22 ~~~~i~G~NgsGKS~~l 38 (162)
T cd03227 22 SLTIITGPNGSGKSTIL 38 (162)
T ss_pred CEEEEECCCCCCHHHHH
Confidence 48999999999999986
No 34
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=95.85 E-value=0.002 Score=47.18 Aligned_cols=18 Identities=33% Similarity=0.241 Sum_probs=15.9
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|.|..||||||||+
T Consensus 26 e~~~l~G~nGsGKSTLl~ 43 (213)
T cd03235 26 EFLAIVGPNGAGKSTLLK 43 (213)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 378999999999999974
No 35
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=95.83 E-value=0.002 Score=47.59 Aligned_cols=18 Identities=39% Similarity=0.361 Sum_probs=16.2
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|+|..|+||||||+
T Consensus 37 e~~~i~G~nGsGKSTLl~ 54 (228)
T PRK10584 37 ETIALIGESGSGKSTLLA 54 (228)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 488999999999999974
No 36
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=95.81 E-value=0.0021 Score=48.35 Aligned_cols=18 Identities=33% Similarity=0.307 Sum_probs=16.0
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|.|..||||||||+
T Consensus 33 e~~~i~G~nGsGKSTLl~ 50 (253)
T PRK14242 33 QVTALIGPSGCGKSTFLR 50 (253)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 378899999999999974
No 37
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=95.81 E-value=0.0021 Score=47.92 Aligned_cols=17 Identities=41% Similarity=0.360 Sum_probs=15.6
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|+|..||||||||+
T Consensus 37 ~~~l~G~nGsGKSTLl~ 53 (233)
T PRK11629 37 MMAIVGSSGSGKSTLLH 53 (233)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 78899999999999974
No 38
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=95.80 E-value=0.0021 Score=47.76 Aligned_cols=17 Identities=35% Similarity=0.292 Sum_probs=15.5
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 30 ~~~l~G~nGsGKSTLl~ 46 (243)
T TIGR02315 30 FVAIIGPSGAGKSTLLR 46 (243)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 78899999999999974
No 39
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=95.77 E-value=0.0022 Score=47.35 Aligned_cols=18 Identities=33% Similarity=0.300 Sum_probs=16.0
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++-|.|..||||||||+
T Consensus 27 e~~~i~G~nGsGKSTLl~ 44 (227)
T cd03260 27 EITALIGPSGCGKSTLLR 44 (227)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 478899999999999974
No 40
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=95.76 E-value=0.0023 Score=46.96 Aligned_cols=17 Identities=29% Similarity=0.284 Sum_probs=15.5
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 30 ~~~i~G~nGsGKSTLl~ 46 (220)
T cd03263 30 IFGLLGHNGAGKTTTLK 46 (220)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 78899999999999974
No 41
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.76 E-value=0.002 Score=47.06 Aligned_cols=17 Identities=29% Similarity=0.165 Sum_probs=15.7
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 27 ~~~i~G~nGsGKSTLl~ 43 (211)
T cd03264 27 MYGLLGPNGAGKTTLMR 43 (211)
T ss_pred cEEEECCCCCCHHHHHH
Confidence 89999999999999974
No 42
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=95.75 E-value=0.0023 Score=47.42 Aligned_cols=18 Identities=28% Similarity=0.167 Sum_probs=15.8
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|.|..||||||||+
T Consensus 27 e~~~l~G~nGsGKSTLl~ 44 (236)
T cd03219 27 EIHGLIGPNGAGKTTLFN 44 (236)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 378899999999999974
No 43
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.75 E-value=0.0024 Score=46.64 Aligned_cols=18 Identities=33% Similarity=0.403 Sum_probs=16.0
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|+|..|+||||||+
T Consensus 32 ~~~~i~G~nG~GKSTLl~ 49 (204)
T cd03250 32 ELVAIVGPVGSGKSSLLS 49 (204)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 488999999999999974
No 44
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=95.73 E-value=0.0029 Score=47.16 Aligned_cols=19 Identities=32% Similarity=0.247 Sum_probs=16.7
Q ss_pred CceEEEecccCCCccCCCC
Q 033696 95 IPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 95 iPvTIiTGfLGsGKtTLLn 113 (113)
=.++.|.|..||||||||+
T Consensus 28 ~~~~~i~G~NGsGKSTll~ 46 (213)
T cd03279 28 NGLFLICGPTGAGKSTILD 46 (213)
T ss_pred cCEEEEECCCCCCHHHHHH
Confidence 3589999999999999974
No 45
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.73 E-value=0.0023 Score=46.99 Aligned_cols=20 Identities=40% Similarity=0.328 Sum_probs=17.5
Q ss_pred CCCceEEEecccCCCccCCCC
Q 033696 93 NRIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 93 ~riPvTIiTGfLGsGKtTLLn 113 (113)
.+ -++.|.|..||||||||+
T Consensus 22 ~~-e~~~i~G~nGsGKSTLl~ 41 (214)
T cd03297 22 NE-EVTGIFGASGAGKSTLLR 41 (214)
T ss_pred cc-eeEEEECCCCCCHHHHHH
Confidence 45 789999999999999974
No 46
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=95.73 E-value=0.0024 Score=47.21 Aligned_cols=17 Identities=29% Similarity=0.206 Sum_probs=15.5
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 28 ~~~l~G~nGsGKSTLl~ 44 (232)
T cd03218 28 IVGLLGPNGAGKTTTFY 44 (232)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 78899999999999974
No 47
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=95.72 E-value=0.0024 Score=46.62 Aligned_cols=18 Identities=28% Similarity=0.338 Sum_probs=15.8
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|.|..||||||||+
T Consensus 27 e~~~l~G~nGsGKSTLl~ 44 (213)
T cd03301 27 EFVVLLGPSGCGKTTTLR 44 (213)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 368899999999999974
No 48
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=95.72 E-value=0.0019 Score=44.71 Aligned_cols=22 Identities=27% Similarity=0.271 Sum_probs=13.3
Q ss_pred CCCCceEEEecccCCCccCCCC
Q 033696 92 DNRIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 92 ~~riPvTIiTGfLGsGKtTLLn 113 (113)
...-++++|+|.-|+|||+||+
T Consensus 21 ~~~~~~~ll~G~~G~GKT~ll~ 42 (185)
T PF13191_consen 21 SGSPRNLLLTGESGSGKTSLLR 42 (185)
T ss_dssp S-----EEE-B-TTSSHHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHH
Confidence 3445899999999999999874
No 49
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.70 E-value=0.0025 Score=47.05 Aligned_cols=17 Identities=35% Similarity=0.380 Sum_probs=15.5
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..|+||||||+
T Consensus 31 ~~~i~G~nGsGKSTLl~ 47 (229)
T cd03254 31 TVAIVGPTGAGKTTLIN 47 (229)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 68899999999999974
No 50
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=95.70 E-value=0.0025 Score=47.02 Aligned_cols=18 Identities=28% Similarity=0.338 Sum_probs=16.1
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|.|..||||||||+
T Consensus 35 e~~~l~G~nGsGKSTLl~ 52 (224)
T TIGR02324 35 ECVALSGPSGAGKSTLLK 52 (224)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 478999999999999974
No 51
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.69 E-value=0.0025 Score=47.17 Aligned_cols=18 Identities=33% Similarity=0.355 Sum_probs=16.0
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|.|..||||||||+
T Consensus 29 e~~~i~G~nGsGKSTLl~ 46 (234)
T cd03251 29 ETVALVGPSGSGKSTLVN 46 (234)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 478999999999999974
No 52
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=95.69 E-value=0.0025 Score=46.39 Aligned_cols=18 Identities=39% Similarity=0.403 Sum_probs=15.9
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|.|..||||||||+
T Consensus 27 ~~~~l~G~nGsGKSTLl~ 44 (213)
T cd03262 27 EVVVIIGPSGSGKSTLLR 44 (213)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 378999999999999974
No 53
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.68 E-value=0.0025 Score=46.44 Aligned_cols=17 Identities=35% Similarity=0.358 Sum_probs=15.7
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 28 ~~~l~G~nGsGKSTLl~ 44 (195)
T PRK13541 28 ITYIKGANGCGKSSLLR 44 (195)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 88999999999999974
No 54
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.66 E-value=0.0026 Score=47.13 Aligned_cols=18 Identities=39% Similarity=0.329 Sum_probs=16.0
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|.|..||||||||+
T Consensus 28 e~~~l~G~nGsGKSTLl~ 45 (236)
T cd03253 28 KKVAIVGPSGSGKSTILR 45 (236)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 478999999999999974
No 55
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=95.64 E-value=0.0026 Score=47.29 Aligned_cols=16 Identities=31% Similarity=0.382 Sum_probs=15.3
Q ss_pred eEEEecccCCCccCCC
Q 033696 97 ATIITGFLGSGKNTGS 112 (113)
Q Consensus 97 vTIiTGfLGsGKtTLL 112 (113)
++.|.|..||||||||
T Consensus 25 ~~~i~GpNGsGKStll 40 (243)
T cd03272 25 HNVVVGRNGSGKSNFF 40 (243)
T ss_pred cEEEECCCCCCHHHHH
Confidence 9999999999999996
No 56
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.64 E-value=0.0027 Score=45.01 Aligned_cols=18 Identities=28% Similarity=0.202 Sum_probs=15.9
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
=++.|+|..|+|||||++
T Consensus 27 e~~~i~G~nGsGKStLl~ 44 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLK 44 (144)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 378899999999999974
No 57
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=95.63 E-value=0.0028 Score=47.35 Aligned_cols=18 Identities=39% Similarity=0.377 Sum_probs=15.8
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|+|..||||||||+
T Consensus 34 e~~~i~G~nGsGKSTLl~ 51 (225)
T PRK10247 34 EFKLITGPSGCGKSTLLK 51 (225)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 378899999999999974
No 58
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.62 E-value=0.0028 Score=46.37 Aligned_cols=18 Identities=44% Similarity=0.377 Sum_probs=16.0
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|.|..||||||||+
T Consensus 25 e~~~l~G~nGsGKSTLl~ 42 (211)
T cd03298 25 EITAIVGPSGSGKSTLLN 42 (211)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 478999999999999974
No 59
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.62 E-value=0.0028 Score=45.90 Aligned_cols=18 Identities=22% Similarity=0.407 Sum_probs=16.0
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|.|..||||||||+
T Consensus 27 ~~~~i~G~nGsGKSTLl~ 44 (182)
T cd03215 27 EIVGIAGLVGNGQTELAE 44 (182)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 478999999999999974
No 60
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.61 E-value=0.0028 Score=46.44 Aligned_cols=17 Identities=41% Similarity=0.438 Sum_probs=15.4
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
.++|.|..|||||||++
T Consensus 27 ~i~I~G~tGSGKTTll~ 43 (186)
T cd01130 27 NILISGGTGSGKTTLLN 43 (186)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 68999999999999864
No 61
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=95.58 E-value=0.0029 Score=48.56 Aligned_cols=17 Identities=29% Similarity=0.311 Sum_probs=15.5
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 29 ~~~i~G~nGsGKSTLl~ 45 (255)
T PRK11248 29 LLVVLGPSGCGKTTLLN 45 (255)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 68899999999999974
No 62
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.58 E-value=0.0029 Score=45.51 Aligned_cols=17 Identities=35% Similarity=0.321 Sum_probs=15.3
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 30 ~~~i~G~nGsGKStLl~ 46 (178)
T cd03247 30 KIALLGRSGSGKSTLLQ 46 (178)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 68899999999999974
No 63
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=95.57 E-value=0.003 Score=47.55 Aligned_cols=18 Identities=39% Similarity=0.268 Sum_probs=15.9
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|.|..||||||||+
T Consensus 30 e~~~i~G~nGsGKSTLl~ 47 (253)
T TIGR02323 30 EVLGIVGESGSGKSTLLG 47 (253)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 378899999999999974
No 64
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.55 E-value=0.0031 Score=47.65 Aligned_cols=18 Identities=33% Similarity=0.301 Sum_probs=16.1
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|.|..||||||||+
T Consensus 34 e~~~i~G~nGsGKSTLl~ 51 (254)
T PRK14273 34 SITALIGPSGCGKSTFLR 51 (254)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 478999999999999974
No 65
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.55 E-value=0.003 Score=47.93 Aligned_cols=17 Identities=41% Similarity=0.362 Sum_probs=15.5
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 40 ~~~l~G~nGsGKSTLl~ 56 (259)
T PRK14274 40 VTAIIGPSGCGKSTFIK 56 (259)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 68999999999999974
No 66
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=95.55 E-value=0.0031 Score=47.56 Aligned_cols=18 Identities=28% Similarity=0.211 Sum_probs=15.9
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|+|..||||||||+
T Consensus 48 e~~~i~G~NGsGKSTLl~ 65 (236)
T cd03267 48 EIVGFIGPNGAGKTTTLK 65 (236)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 478899999999999974
No 67
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=95.55 E-value=0.003 Score=47.20 Aligned_cols=18 Identities=22% Similarity=0.314 Sum_probs=16.0
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|.|..||||||||+
T Consensus 29 e~~~i~G~nGsGKSTLl~ 46 (242)
T PRK11124 29 ETLVLLGPSGAGKSSLLR 46 (242)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 478899999999999974
No 68
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=95.55 E-value=0.0031 Score=46.99 Aligned_cols=20 Identities=40% Similarity=0.418 Sum_probs=17.0
Q ss_pred CCceEEEecccCCCccCCCC
Q 033696 94 RIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 94 riPvTIiTGfLGsGKtTLLn 113 (113)
+-++.+|+|..|+|||||++
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIR 61 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHH
Confidence 34689999999999999863
No 69
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=95.55 E-value=0.0031 Score=46.71 Aligned_cols=18 Identities=33% Similarity=0.274 Sum_probs=15.8
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
=++.|.|..||||||||+
T Consensus 27 e~~~l~G~nGsGKSTLl~ 44 (230)
T TIGR03410 27 EVTCVLGRNGVGKTTLLK 44 (230)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 378999999999999974
No 70
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.54 E-value=0.0031 Score=45.43 Aligned_cols=17 Identities=35% Similarity=0.405 Sum_probs=15.4
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|+|..||||||||+
T Consensus 29 ~~~i~G~nGsGKSTLl~ 45 (166)
T cd03223 29 RLLITGPSGTGKSSLFR 45 (166)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 68999999999999974
No 71
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=95.53 E-value=0.0033 Score=47.16 Aligned_cols=18 Identities=44% Similarity=0.573 Sum_probs=16.3
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
+++.|.|..|+||||||+
T Consensus 23 g~~~i~G~NGsGKTTLl~ 40 (204)
T cd03240 23 PLTLIVGQNGAGKTTIIE 40 (204)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 399999999999999973
No 72
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.52 E-value=0.0032 Score=48.47 Aligned_cols=17 Identities=41% Similarity=0.413 Sum_probs=15.5
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 35 ~~~l~G~nGsGKSTLl~ 51 (280)
T PRK13649 35 YTAFIGHTGSGKSTIMQ 51 (280)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 78899999999999974
No 73
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=95.52 E-value=0.0032 Score=47.38 Aligned_cols=17 Identities=35% Similarity=0.345 Sum_probs=15.5
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 29 ~~~i~G~nGsGKSTLl~ 45 (247)
T TIGR00972 29 VTALIGPSGCGKSTLLR 45 (247)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 78899999999999974
No 74
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=95.52 E-value=0.0032 Score=45.89 Aligned_cols=20 Identities=35% Similarity=0.160 Sum_probs=16.8
Q ss_pred CCceEEEecccCCCccCCCC
Q 033696 94 RIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 94 riPvTIiTGfLGsGKtTLLn 113 (113)
+=-++.|.|..||||||||+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~ 44 (198)
T TIGR01189 25 AGEALQVTGPNGIGKTTLLR 44 (198)
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 34578899999999999974
No 75
>PRK10908 cell division protein FtsE; Provisional
Probab=95.52 E-value=0.0032 Score=46.51 Aligned_cols=19 Identities=32% Similarity=0.345 Sum_probs=16.4
Q ss_pred CceEEEecccCCCccCCCC
Q 033696 95 IPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 95 iPvTIiTGfLGsGKtTLLn 113 (113)
=-++.|.|..||||||||+
T Consensus 28 Ge~~~i~G~nGsGKSTLl~ 46 (222)
T PRK10908 28 GEMAFLTGHSGAGKSTLLK 46 (222)
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 3478899999999999974
No 76
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.51 E-value=0.0032 Score=47.12 Aligned_cols=18 Identities=33% Similarity=0.265 Sum_probs=15.8
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
=++.|.|..||||||||+
T Consensus 29 e~~~i~G~nGsGKSTLl~ 46 (239)
T cd03296 29 ELVALLGPSGSGKTTLLR 46 (239)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 368899999999999974
No 77
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.51 E-value=0.0032 Score=47.27 Aligned_cols=17 Identities=41% Similarity=0.368 Sum_probs=15.5
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 31 ~~~i~G~nGsGKSTLl~ 47 (250)
T PRK14247 31 ITALMGPSGSGKSTLLR 47 (250)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 68899999999999974
No 78
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.49 E-value=0.0032 Score=46.27 Aligned_cols=17 Identities=35% Similarity=0.532 Sum_probs=15.2
Q ss_pred ceEEEecccCCCccCCC
Q 033696 96 PATIITGFLGSGKNTGS 112 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLL 112 (113)
.++.+.|.+|+|||||.
T Consensus 23 ~~i~l~G~lGaGKTtl~ 39 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLV 39 (133)
T ss_pred CEEEEEcCCCCCHHHHH
Confidence 37899999999999984
No 79
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.49 E-value=0.0033 Score=45.19 Aligned_cols=18 Identities=39% Similarity=0.385 Sum_probs=16.0
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|.|..|+||||||+
T Consensus 29 e~~~i~G~nGsGKStLl~ 46 (173)
T cd03246 29 ESLAIIGPSGSGKSTLAR 46 (173)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 488999999999999974
No 80
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.48 E-value=0.0033 Score=45.08 Aligned_cols=18 Identities=39% Similarity=0.337 Sum_probs=16.0
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|.|..||||||||+
T Consensus 29 ~~~~l~G~nGsGKstLl~ 46 (171)
T cd03228 29 EKVAIVGPSGSGKSTLLK 46 (171)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 478999999999999974
No 81
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=95.47 E-value=0.0033 Score=46.77 Aligned_cols=18 Identities=28% Similarity=0.379 Sum_probs=16.0
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
=++.|.|..||||||||+
T Consensus 30 e~~~l~G~nGsGKSTLl~ 47 (238)
T cd03249 30 KTVALVGSSGCGKSTVVS 47 (238)
T ss_pred CEEEEEeCCCCCHHHHHH
Confidence 478999999999999974
No 82
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.44 E-value=0.0037 Score=47.55 Aligned_cols=19 Identities=32% Similarity=0.223 Sum_probs=16.8
Q ss_pred CceEEEecccCCCccCCCC
Q 033696 95 IPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 95 iPvTIiTGfLGsGKtTLLn 113 (113)
..+.+|||..|+||||||+
T Consensus 29 ~~~~~itGpNg~GKStlLk 47 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLK 47 (213)
T ss_pred ceEEEEECCCCCChHHHHH
Confidence 3689999999999999974
No 83
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=95.44 E-value=0.0035 Score=46.61 Aligned_cols=18 Identities=39% Similarity=0.355 Sum_probs=15.9
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
=++.|.|..||||||||+
T Consensus 29 e~~~i~G~nGsGKSTLl~ 46 (237)
T cd03252 29 EVVGIVGRSGSGKSTLTK 46 (237)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 378999999999999974
No 84
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.44 E-value=0.0035 Score=46.48 Aligned_cols=17 Identities=35% Similarity=0.384 Sum_probs=15.4
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..|+||||||+
T Consensus 39 ~~~i~G~nGsGKSTLl~ 55 (214)
T PRK13543 39 ALLVQGDNGAGKTTLLR 55 (214)
T ss_pred EEEEEcCCCCCHHHHHH
Confidence 68899999999999974
No 85
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=95.44 E-value=0.0035 Score=45.97 Aligned_cols=18 Identities=39% Similarity=0.409 Sum_probs=15.9
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|.|..||||||||+
T Consensus 31 ~~~~i~G~nGsGKSTLl~ 48 (220)
T cd03245 31 EKVAIIGRVGSGKSTLLK 48 (220)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 378899999999999974
No 86
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.43 E-value=0.0035 Score=46.22 Aligned_cols=18 Identities=44% Similarity=0.433 Sum_probs=15.7
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|+|..|+||||||+
T Consensus 29 e~~~i~G~nGsGKSTLl~ 46 (207)
T PRK13539 29 EALVLTGPNGSGKTTLLR 46 (207)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 378899999999999974
No 87
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.43 E-value=0.0037 Score=45.77 Aligned_cols=18 Identities=33% Similarity=0.318 Sum_probs=16.0
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|+|..||||||||+
T Consensus 34 e~~~l~G~nGsGKSTLl~ 51 (192)
T cd03232 34 TLTALMGESGAGKTTLLD 51 (192)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 478999999999999974
No 88
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.43 E-value=0.0036 Score=45.20 Aligned_cols=17 Identities=35% Similarity=0.305 Sum_probs=15.3
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++-|.|..||||||||+
T Consensus 28 ~~~i~G~nGsGKSTLl~ 44 (178)
T cd03229 28 IVALLGPSGSGKSTLLR 44 (178)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 78899999999999964
No 89
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=95.42 E-value=0.0036 Score=46.80 Aligned_cols=18 Identities=28% Similarity=0.185 Sum_probs=15.8
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|.|..||||||||+
T Consensus 30 e~~~l~G~nGsGKSTLl~ 47 (241)
T PRK10895 30 EIVGLLGPNGAGKTTTFY 47 (241)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 368899999999999974
No 90
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=95.42 E-value=0.0036 Score=47.69 Aligned_cols=18 Identities=33% Similarity=0.289 Sum_probs=15.8
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|+|..||||||||+
T Consensus 40 e~~~i~G~nGsGKSTLl~ 57 (260)
T PRK10744 40 QVTAFIGPSGCGKSTLLR 57 (260)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 378899999999999974
No 91
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=95.41 E-value=0.0037 Score=46.86 Aligned_cols=17 Identities=41% Similarity=0.352 Sum_probs=15.3
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 31 ~~~i~G~nGsGKSTLl~ 47 (250)
T PRK11264 31 VVAIIGPSGSGKTTLLR 47 (250)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 67899999999999974
No 92
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.41 E-value=0.0037 Score=48.60 Aligned_cols=17 Identities=41% Similarity=0.464 Sum_probs=15.5
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 39 ~~~l~G~nGsGKSTLl~ 55 (289)
T PRK13645 39 VTCVIGTTGSGKSTMIQ 55 (289)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 78899999999999974
No 93
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.41 E-value=0.0037 Score=48.18 Aligned_cols=18 Identities=44% Similarity=0.409 Sum_probs=16.0
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|.|..||||||||+
T Consensus 36 e~~~l~G~nGsGKSTLl~ 53 (271)
T PRK13632 36 EYVAILGHNGSGKSTISK 53 (271)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 378899999999999974
No 94
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=95.41 E-value=0.0037 Score=47.46 Aligned_cols=18 Identities=33% Similarity=0.320 Sum_probs=15.8
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
=++.|.|..||||||||+
T Consensus 31 e~~~i~G~nGsGKSTLl~ 48 (258)
T PRK14241 31 SVTAFIGPSGCGKSTVLR 48 (258)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 368899999999999974
No 95
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.40 E-value=0.0037 Score=48.02 Aligned_cols=17 Identities=35% Similarity=0.280 Sum_probs=15.5
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 29 ~~~i~G~nGsGKSTLl~ 45 (271)
T PRK13638 29 VTGLVGANGCGKSTLFM 45 (271)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 68899999999999974
No 96
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.40 E-value=0.0037 Score=45.90 Aligned_cols=18 Identities=28% Similarity=0.233 Sum_probs=16.0
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|.|..||||||||+
T Consensus 28 e~~~l~G~nGsGKSTLl~ 45 (204)
T PRK13538 28 ELVQIEGPNGAGKTSLLR 45 (204)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 488999999999999964
No 97
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=95.39 E-value=0.0038 Score=46.69 Aligned_cols=17 Identities=29% Similarity=0.257 Sum_probs=15.4
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 29 ~~~i~G~nGsGKSTLl~ 45 (236)
T TIGR03864 29 FVALLGPNGAGKSTLFS 45 (236)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 78899999999999974
No 98
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=95.38 E-value=0.0038 Score=46.63 Aligned_cols=18 Identities=39% Similarity=0.403 Sum_probs=15.7
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|.|..||||||||+
T Consensus 28 e~~~l~G~nGsGKSTLl~ 45 (240)
T PRK09493 28 EVVVIIGPSGSGKSTLLR 45 (240)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 378899999999999974
No 99
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=95.36 E-value=0.0051 Score=55.59 Aligned_cols=21 Identities=24% Similarity=0.099 Sum_probs=19.3
Q ss_pred CCCCceEEEecccCCCccCCC
Q 033696 92 DNRIPATIITGFLGSGKNTGS 112 (113)
Q Consensus 92 ~~riPvTIiTGfLGsGKtTLL 112 (113)
...-||++|.|..||||||||
T Consensus 22 ~f~~gi~lI~G~nGsGKSSIl 42 (908)
T COG0419 22 LFDSGIFLIVGPNGAGKSSIL 42 (908)
T ss_pred cCCCCeEEEECCCCCcHHHHH
Confidence 567899999999999999997
No 100
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.36 E-value=0.0039 Score=48.11 Aligned_cols=18 Identities=39% Similarity=0.453 Sum_probs=16.0
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|.|..||||||||+
T Consensus 51 e~~~l~G~nGsGKSTLl~ 68 (269)
T cd03294 51 EIFVIMGLSGSGKSTLLR 68 (269)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 478999999999999974
No 101
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.36 E-value=0.0039 Score=47.08 Aligned_cols=17 Identities=35% Similarity=0.345 Sum_probs=15.5
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 34 ~~~i~G~nGsGKSTLl~ 50 (253)
T PRK14261 34 VTALIGPSGCGKSTLLR 50 (253)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 68999999999999974
No 102
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.35 E-value=0.0039 Score=45.75 Aligned_cols=17 Identities=35% Similarity=0.286 Sum_probs=15.4
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 32 ~~~i~G~nGsGKSTLl~ 48 (221)
T cd03244 32 KVGIVGRTGSGKSSLLL 48 (221)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 78899999999999974
No 103
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.35 E-value=0.0039 Score=45.63 Aligned_cols=19 Identities=26% Similarity=0.116 Sum_probs=16.3
Q ss_pred CceEEEecccCCCccCCCC
Q 033696 95 IPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 95 iPvTIiTGfLGsGKtTLLn 113 (113)
=-++.|.|..|+||||||+
T Consensus 27 Ge~~~l~G~nGsGKSTLl~ 45 (200)
T PRK13540 27 GGLLHLKGSNGAGKTTLLK 45 (200)
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 3478899999999999974
No 104
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=95.35 E-value=0.0039 Score=47.95 Aligned_cols=18 Identities=39% Similarity=0.278 Sum_probs=15.8
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|.|..||||||||+
T Consensus 34 e~~~i~G~nGsGKSTLl~ 51 (269)
T PRK11831 34 KITAIMGPSGIGKTTLLR 51 (269)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 378899999999999974
No 105
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=95.35 E-value=0.0041 Score=46.72 Aligned_cols=18 Identities=28% Similarity=0.243 Sum_probs=16.0
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|.|..||||||||+
T Consensus 32 e~~~l~G~nGsGKSTLl~ 49 (255)
T PRK11300 32 EIVSLIGPNGAGKTTVFN 49 (255)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 478899999999999974
No 106
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=95.34 E-value=0.004 Score=46.23 Aligned_cols=17 Identities=41% Similarity=0.352 Sum_probs=15.4
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|+|..||||||||+
T Consensus 35 ~~~l~G~nGsGKSTLlk 51 (226)
T cd03234 35 VMAILGSSGSGKTTLLD 51 (226)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 68899999999999974
No 107
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.34 E-value=0.004 Score=46.78 Aligned_cols=17 Identities=41% Similarity=0.343 Sum_probs=15.4
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..|+||||||+
T Consensus 31 ~~~i~G~nGsGKSTLl~ 47 (250)
T PRK14262 31 ITAIIGPSGCGKTTLLR 47 (250)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 68899999999999974
No 108
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.33 E-value=0.004 Score=46.87 Aligned_cols=17 Identities=29% Similarity=0.253 Sum_probs=15.4
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..|+||||||+
T Consensus 32 ~~~l~G~nGsGKSTLl~ 48 (253)
T PRK14267 32 VFALMGPSGCGKSTLLR 48 (253)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 68899999999999974
No 109
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=95.33 E-value=0.004 Score=47.37 Aligned_cols=17 Identities=35% Similarity=0.298 Sum_probs=15.6
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 24 i~~l~G~nGsGKSTLl~ 40 (248)
T PRK03695 24 ILHLVGPNGAGKSTLLA 40 (248)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 78999999999999974
No 110
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.32 E-value=0.0041 Score=46.88 Aligned_cols=18 Identities=28% Similarity=0.239 Sum_probs=16.0
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|.|..||||||||+
T Consensus 30 e~~~i~G~nGsGKSTLl~ 47 (250)
T PRK14245 30 SVVAFIGPSGCGKSTFLR 47 (250)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 478999999999999974
No 111
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.32 E-value=0.0041 Score=44.72 Aligned_cols=17 Identities=29% Similarity=0.159 Sum_probs=15.4
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 28 ~~~i~G~nGsGKStLl~ 44 (173)
T cd03230 28 IYGLLGPNGAGKTTLIK 44 (173)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 68899999999999974
No 112
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=95.32 E-value=0.0041 Score=46.67 Aligned_cols=17 Identities=41% Similarity=0.368 Sum_probs=15.4
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++-|.|..||||||||+
T Consensus 33 ~~~i~G~nGsGKSTLl~ 49 (252)
T PRK14239 33 ITALIGPSGSGKSTLLR 49 (252)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 68899999999999974
No 113
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.32 E-value=0.0041 Score=46.71 Aligned_cols=17 Identities=35% Similarity=0.345 Sum_probs=15.6
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 31 ~~~i~G~nGsGKSTLl~ 47 (249)
T PRK14253 31 VTALIGPSGCGKSTLLR 47 (249)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 78899999999999974
No 114
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.31 E-value=0.0041 Score=46.88 Aligned_cols=18 Identities=33% Similarity=0.311 Sum_probs=15.9
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|+|..||||||||+
T Consensus 29 e~~~i~G~nGsGKSTLl~ 46 (246)
T PRK14269 29 KITALIGASGCGKSTFLR 46 (246)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 378899999999999974
No 115
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.31 E-value=0.0041 Score=44.67 Aligned_cols=19 Identities=26% Similarity=0.176 Sum_probs=16.5
Q ss_pred CceEEEecccCCCccCCCC
Q 033696 95 IPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 95 iPvTIiTGfLGsGKtTLLn 113 (113)
=-++.|.|..|+||||||+
T Consensus 26 Ge~~~l~G~nGsGKSTLl~ 44 (163)
T cd03216 26 GEVHALLGENGAGKSTLMK 44 (163)
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 3478999999999999974
No 116
>PF13245 AAA_19: Part of AAA domain
Probab=95.31 E-value=0.0052 Score=40.66 Aligned_cols=18 Identities=33% Similarity=0.517 Sum_probs=15.4
Q ss_pred CCceEEEecccCCCccCC
Q 033696 94 RIPATIITGFLGSGKNTG 111 (113)
Q Consensus 94 riPvTIiTGfLGsGKtTL 111 (113)
+=|+.||.|..|+|||++
T Consensus 9 ~~~~~vv~g~pGtGKT~~ 26 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTT 26 (76)
T ss_pred hCCeEEEECCCCCCHHHH
Confidence 347899999999999964
No 117
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.30 E-value=0.0042 Score=46.60 Aligned_cols=17 Identities=35% Similarity=0.415 Sum_probs=15.3
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..|+||||||+
T Consensus 29 ~~~i~G~nGsGKSTLl~ 45 (242)
T cd03295 29 FLVLIGPSGSGKTTTMK 45 (242)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 68899999999999974
No 118
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.29 E-value=0.0042 Score=46.86 Aligned_cols=18 Identities=39% Similarity=0.375 Sum_probs=15.8
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|.|..||||||||+
T Consensus 31 e~~~i~G~nGsGKSTLl~ 48 (252)
T PRK14256 31 SVTAIIGPSGCGKSTVLR 48 (252)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 368899999999999974
No 119
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.28 E-value=0.0043 Score=47.48 Aligned_cols=17 Identities=35% Similarity=0.329 Sum_probs=15.3
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 49 ~~~i~G~nGsGKSTLl~ 65 (268)
T PRK14248 49 VTALIGPSGCGKSTFLR 65 (268)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 68899999999999974
No 120
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.27 E-value=0.0043 Score=47.89 Aligned_cols=18 Identities=33% Similarity=0.135 Sum_probs=16.0
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|.|..||||||||+
T Consensus 26 e~~~i~G~NGsGKSTLlk 43 (246)
T cd03237 26 EVIGILGPNGIGKTTFIK 43 (246)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 478999999999999974
No 121
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.27 E-value=0.0043 Score=45.88 Aligned_cols=17 Identities=29% Similarity=0.278 Sum_probs=15.7
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 35 ~~~i~G~nGsGKSTLl~ 51 (202)
T cd03233 35 MVLVLGRPGSGCSTLLK 51 (202)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 88999999999999974
No 122
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.27 E-value=0.0043 Score=43.55 Aligned_cols=18 Identities=33% Similarity=0.287 Sum_probs=16.3
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
.++.|+|..|+||||||+
T Consensus 26 ~~~~i~G~nGsGKStll~ 43 (157)
T cd00267 26 EIVALVGPNGSGKSTLLR 43 (157)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 589999999999999963
No 123
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=95.27 E-value=0.0043 Score=45.86 Aligned_cols=19 Identities=26% Similarity=0.118 Sum_probs=16.5
Q ss_pred CceEEEecccCCCccCCCC
Q 033696 95 IPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 95 iPvTIiTGfLGsGKtTLLn 113 (113)
=-++.|.|..|+||||||+
T Consensus 26 Ge~~~i~G~nGsGKSTLl~ 44 (223)
T TIGR03740 26 NSVYGLLGPNGAGKSTLLK 44 (223)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3478999999999999974
No 124
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=95.27 E-value=0.0043 Score=45.81 Aligned_cols=18 Identities=44% Similarity=0.462 Sum_probs=15.9
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|+|..||||||||+
T Consensus 41 e~~~i~G~nGsGKSTLl~ 58 (226)
T cd03248 41 EVTALVGPSGSGKSTVVA 58 (226)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 378999999999999974
No 125
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=95.26 E-value=0.0043 Score=46.52 Aligned_cols=18 Identities=44% Similarity=0.375 Sum_probs=15.9
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|+|..||||||||+
T Consensus 34 e~~~i~G~nGsGKSTLl~ 51 (252)
T CHL00131 34 EIHAIMGPNGSGKSTLSK 51 (252)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 478899999999999974
No 126
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=95.24 E-value=0.0044 Score=46.21 Aligned_cols=17 Identities=35% Similarity=0.397 Sum_probs=15.4
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..|+||||||+
T Consensus 30 ~~~l~G~nGsGKSTLl~ 46 (242)
T TIGR03411 30 LRVIIGPNGAGKTTMMD 46 (242)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 68899999999999974
No 127
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.24 E-value=0.0045 Score=46.55 Aligned_cols=17 Identities=35% Similarity=0.303 Sum_probs=15.3
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|+|..||||||||+
T Consensus 32 ~~~i~G~nGsGKSTLl~ 48 (251)
T PRK14251 32 LTALIGPSGCGKSTFLR 48 (251)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 67899999999999974
No 128
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.24 E-value=0.0045 Score=46.68 Aligned_cols=18 Identities=33% Similarity=0.283 Sum_probs=15.9
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|.|..||||||||+
T Consensus 31 e~~~i~G~nGsGKSTLl~ 48 (251)
T PRK14270 31 KITALIGPSGCGKSTFLR 48 (251)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 378899999999999974
No 129
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.21 E-value=0.0046 Score=47.05 Aligned_cols=17 Identities=35% Similarity=0.335 Sum_probs=15.4
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 40 ~~~i~G~nGsGKSTLl~ 56 (258)
T PRK14268 40 VTALIGPSGCGKSTFIR 56 (258)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 68899999999999974
No 130
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=95.21 E-value=0.0059 Score=46.58 Aligned_cols=17 Identities=41% Similarity=0.307 Sum_probs=15.9
Q ss_pred ceEEEecccCCCccCCC
Q 033696 96 PATIITGFLGSGKNTGS 112 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLL 112 (113)
++++|.|..||||||||
T Consensus 23 ~~~~i~G~NGsGKStll 39 (247)
T cd03275 23 RFTCIIGPNGSGKSNLM 39 (247)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 59999999999999996
No 131
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=95.19 E-value=0.0047 Score=47.47 Aligned_cols=18 Identities=33% Similarity=0.279 Sum_probs=15.9
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|.|..||||||||+
T Consensus 46 e~~~i~G~nGsGKSTLl~ 63 (267)
T PRK14235 46 TVTAFIGPSGCGKSTFLR 63 (267)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 468899999999999974
No 132
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=95.18 E-value=0.0048 Score=46.76 Aligned_cols=18 Identities=33% Similarity=0.285 Sum_probs=16.0
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|.|..||||||||+
T Consensus 29 e~~~l~G~nGsGKSTLl~ 46 (255)
T PRK11231 29 KITALIGPNGCGKSTLLK 46 (255)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 478899999999999974
No 133
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.18 E-value=0.0043 Score=46.49 Aligned_cols=18 Identities=33% Similarity=0.340 Sum_probs=16.2
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|.|..||||||||+
T Consensus 26 e~~~l~G~nGsGKSTLl~ 43 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVK 43 (177)
T ss_pred CEEEEECCCCChHHHHHH
Confidence 488999999999999974
No 134
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.18 E-value=0.0048 Score=47.37 Aligned_cols=18 Identities=44% Similarity=0.420 Sum_probs=15.9
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|.|..||||||||+
T Consensus 36 e~~~I~G~nGsGKSTLl~ 53 (269)
T PRK13648 36 QWTSIVGHNGSGKSTIAK 53 (269)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 378899999999999974
No 135
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.18 E-value=0.0048 Score=47.85 Aligned_cols=17 Identities=29% Similarity=0.231 Sum_probs=15.5
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 48 ~~~IiG~nGsGKSTLl~ 64 (274)
T PRK14265 48 IIAFIGPSGCGKSTLLR 64 (274)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 68899999999999974
No 136
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=95.18 E-value=0.0048 Score=47.91 Aligned_cols=18 Identities=28% Similarity=0.259 Sum_probs=15.9
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|.|..||||||||+
T Consensus 39 e~~~I~G~NGsGKSTLlk 56 (257)
T PRK11247 39 QFVAVVGRSGCGKSTLLR 56 (257)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 378899999999999974
No 137
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=95.17 E-value=0.0049 Score=46.74 Aligned_cols=17 Identities=41% Similarity=0.257 Sum_probs=15.4
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..|+||||||+
T Consensus 29 ~~~i~G~nGsGKSTLl~ 45 (256)
T TIGR03873 29 LTGLLGPNGSGKSTLLR 45 (256)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 68899999999999974
No 138
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=95.16 E-value=0.0048 Score=45.99 Aligned_cols=17 Identities=29% Similarity=0.327 Sum_probs=15.3
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++-|.|..||||||||+
T Consensus 33 ~~~i~G~nGsGKSTLl~ 49 (237)
T PRK11614 33 IVTLIGANGAGKTTLLG 49 (237)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 67899999999999974
No 139
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.14 E-value=0.005 Score=46.32 Aligned_cols=17 Identities=35% Similarity=0.335 Sum_probs=15.4
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++-|+|..||||||||+
T Consensus 33 ~~~l~G~nGsGKSTLl~ 49 (252)
T PRK14255 33 ITALIGPSGCGKSTYLR 49 (252)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 68899999999999974
No 140
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=95.14 E-value=0.005 Score=45.38 Aligned_cols=18 Identities=33% Similarity=0.457 Sum_probs=16.2
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|.|..||||||||+
T Consensus 28 e~~~i~G~nGsGKSTLl~ 45 (218)
T cd03290 28 QLTMIVGQVGCGKSSLLL 45 (218)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 488999999999999974
No 141
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.13 E-value=0.005 Score=46.41 Aligned_cols=17 Identities=41% Similarity=0.350 Sum_probs=15.4
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 32 ~~~i~G~nGsGKSTLl~ 48 (251)
T PRK14249 32 ITAIIGPSGCGKSTLLR 48 (251)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 68899999999999974
No 142
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.13 E-value=0.0051 Score=44.48 Aligned_cols=19 Identities=32% Similarity=0.111 Sum_probs=16.3
Q ss_pred CceEEEecccCCCccCCCC
Q 033696 95 IPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 95 iPvTIiTGfLGsGKtTLLn 113 (113)
=-++.|.|..||||||||+
T Consensus 25 G~~~~l~G~nGsGKStLl~ 43 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLK 43 (180)
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 3478999999999999964
No 143
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=95.13 E-value=0.005 Score=45.33 Aligned_cols=18 Identities=33% Similarity=0.300 Sum_probs=15.8
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|.|..||||||||+
T Consensus 25 e~~~i~G~nGsGKSTLl~ 42 (213)
T TIGR01277 25 EIVAIMGPSGAGKSTLLN 42 (213)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 378899999999999974
No 144
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=95.12 E-value=0.005 Score=45.92 Aligned_cols=18 Identities=50% Similarity=0.444 Sum_probs=15.9
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|.|..||||||||+
T Consensus 28 e~~~i~G~nGsGKSTLl~ 45 (248)
T PRK09580 28 EVHAIMGPNGSGKSTLSA 45 (248)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 478899999999999974
No 145
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=95.12 E-value=0.0067 Score=48.11 Aligned_cols=22 Identities=32% Similarity=0.208 Sum_probs=18.9
Q ss_pred CCCCCceEEEecccCCCccCCC
Q 033696 91 PDNRIPATIITGFLGSGKNTGS 112 (113)
Q Consensus 91 ~~~riPvTIiTGfLGsGKtTLL 112 (113)
...+..++.|+|+.|+|||||+
T Consensus 30 ~~~~~~~i~i~G~~G~GKttl~ 51 (300)
T TIGR00750 30 YTGNAHRVGITGTPGAGKSTLL 51 (300)
T ss_pred ccCCceEEEEECCCCCCHHHHH
Confidence 3456889999999999999985
No 146
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=95.11 E-value=0.0051 Score=47.05 Aligned_cols=17 Identities=35% Similarity=0.307 Sum_probs=15.4
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 30 ~~~i~G~nGsGKSTLl~ 46 (258)
T PRK13548 30 VVAILGPNGAGKSTLLR 46 (258)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 68899999999999974
No 147
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=95.11 E-value=0.0048 Score=46.18 Aligned_cols=17 Identities=41% Similarity=0.348 Sum_probs=15.7
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 24 ~~~i~G~nGsGKStll~ 40 (197)
T cd03278 24 LTAIVGPNGSGKSNIID 40 (197)
T ss_pred cEEEECCCCCCHHHHHH
Confidence 89999999999999963
No 148
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=95.10 E-value=0.0052 Score=46.36 Aligned_cols=18 Identities=33% Similarity=0.298 Sum_probs=15.7
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|.|..||||||||+
T Consensus 27 e~~~i~G~nGsGKSTLl~ 44 (252)
T TIGR03005 27 EKVALIGPSGSGKSTILR 44 (252)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 368899999999999974
No 149
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=95.09 E-value=0.0052 Score=46.64 Aligned_cols=18 Identities=33% Similarity=0.350 Sum_probs=15.9
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|.|..||||||||+
T Consensus 30 e~~~l~G~nGsGKSTLl~ 47 (254)
T PRK10418 30 RVLALVGGSGSGKSLTCA 47 (254)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 378899999999999974
No 150
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=95.08 E-value=0.0053 Score=47.19 Aligned_cols=17 Identities=41% Similarity=0.376 Sum_probs=15.4
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 48 ~~~I~G~nGsGKSTLl~ 64 (267)
T PRK14237 48 ITALIGPSGSGKSTYLR 64 (267)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 68899999999999974
No 151
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=95.08 E-value=0.0053 Score=47.02 Aligned_cols=18 Identities=39% Similarity=0.266 Sum_probs=16.0
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|.|..||||||||+
T Consensus 34 e~~~i~G~nGsGKSTLl~ 51 (265)
T PRK10253 34 HFTAIIGPNGCGKSTLLR 51 (265)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 478999999999999974
No 152
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.08 E-value=0.0053 Score=46.11 Aligned_cols=18 Identities=33% Similarity=0.324 Sum_probs=15.9
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|.|..|+||||||+
T Consensus 30 e~~~i~G~nGsGKSTLl~ 47 (250)
T PRK14266 30 SVTALIGPSGCGKSTFIR 47 (250)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 378899999999999974
No 153
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=95.08 E-value=0.0065 Score=49.05 Aligned_cols=16 Identities=50% Similarity=0.407 Sum_probs=15.0
Q ss_pred eEEEecccCCCccCCC
Q 033696 97 ATIITGFLGSGKNTGS 112 (113)
Q Consensus 97 vTIiTGfLGsGKtTLL 112 (113)
+++|+|.+|+||||||
T Consensus 30 ~~~i~G~NG~GKTtLL 45 (209)
T COG4133 30 ALQITGPNGAGKTTLL 45 (209)
T ss_pred EEEEECCCCCcHHHHH
Confidence 6899999999999997
No 154
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=95.07 E-value=0.0054 Score=47.26 Aligned_cols=18 Identities=28% Similarity=0.241 Sum_probs=15.8
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|.|..||||||||+
T Consensus 31 e~~~I~G~NGsGKSTLl~ 48 (251)
T PRK09544 31 KILTLLGPNGAGKSTLVR 48 (251)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 378899999999999974
No 155
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.07 E-value=0.0054 Score=46.25 Aligned_cols=18 Identities=33% Similarity=0.298 Sum_probs=15.8
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|.|..||||||||+
T Consensus 30 e~~~i~G~nGsGKSTLl~ 47 (241)
T PRK14250 30 AIYTIVGPSGAGKSTLIK 47 (241)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 378899999999999974
No 156
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=95.06 E-value=0.0054 Score=45.04 Aligned_cols=19 Identities=42% Similarity=0.249 Sum_probs=16.4
Q ss_pred CceEEEecccCCCccCCCC
Q 033696 95 IPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 95 iPvTIiTGfLGsGKtTLLn 113 (113)
=-++.|.|..|+||||||+
T Consensus 26 Ge~~~i~G~nGsGKSTLl~ 44 (201)
T cd03231 26 GEALQVTGPNGSGKTTLLR 44 (201)
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 3478899999999999974
No 157
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=95.05 E-value=0.0055 Score=49.79 Aligned_cols=18 Identities=44% Similarity=0.266 Sum_probs=15.9
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
=++.|-|.+||||||||+
T Consensus 29 ~i~~iiGpNG~GKSTLLk 46 (258)
T COG1120 29 EITGILGPNGSGKSTLLK 46 (258)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 378899999999999974
No 158
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=95.05 E-value=0.0054 Score=47.15 Aligned_cols=17 Identities=41% Similarity=0.391 Sum_probs=15.4
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 41 ~~~i~G~NGsGKSTLl~ 57 (267)
T PRK15112 41 TLAIIGENGSGKSTLAK 57 (267)
T ss_pred EEEEEcCCCCCHHHHHH
Confidence 68899999999999974
No 159
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=95.05 E-value=0.0055 Score=45.98 Aligned_cols=17 Identities=29% Similarity=0.212 Sum_probs=15.3
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 50 ~~~i~G~nGsGKSTLl~ 66 (224)
T cd03220 50 RIGLIGRNGAGKSTLLR 66 (224)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 68899999999999974
No 160
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=95.04 E-value=0.0055 Score=45.09 Aligned_cols=18 Identities=33% Similarity=0.349 Sum_probs=16.0
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|+|..|+||||||+
T Consensus 27 e~~~i~G~nGsGKStLl~ 44 (200)
T cd03217 27 EVHALMGPNGSGKSTLAK 44 (200)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 478999999999999974
No 161
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=95.03 E-value=0.0056 Score=47.19 Aligned_cols=18 Identities=33% Similarity=0.377 Sum_probs=16.0
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|.|..||||||||+
T Consensus 34 e~~~l~G~nGsGKSTLl~ 51 (272)
T PRK15056 34 SIAALVGVNGSGKSTLFK 51 (272)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 478899999999999974
No 162
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.03 E-value=0.0056 Score=46.16 Aligned_cols=17 Identities=35% Similarity=0.294 Sum_probs=15.3
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 33 ~~~I~G~nGsGKSTLl~ 49 (251)
T PRK14244 33 VTAFIGPSGCGKSTFLR 49 (251)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 68899999999999974
No 163
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=95.03 E-value=0.0056 Score=45.98 Aligned_cols=17 Identities=35% Similarity=0.329 Sum_probs=15.4
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 31 ~~~i~G~nGsGKSTLl~ 47 (250)
T PRK14240 31 VTALIGPSGCGKSTFLR 47 (250)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 68899999999999974
No 164
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=95.03 E-value=0.0056 Score=44.78 Aligned_cols=18 Identities=33% Similarity=0.254 Sum_probs=15.8
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|.|..|+||||||+
T Consensus 35 ~~~~i~G~nGsGKSTLl~ 52 (207)
T cd03369 35 EKIGIVGRTGAGKSTLIL 52 (207)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 368899999999999974
No 165
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=95.01 E-value=0.0057 Score=45.61 Aligned_cols=18 Identities=33% Similarity=0.290 Sum_probs=15.8
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|+|..||||||||+
T Consensus 26 e~~~l~G~nGsGKSTLl~ 43 (232)
T PRK10771 26 ERVAILGPSGAGKSTLLN 43 (232)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 378899999999999974
No 166
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.00 E-value=0.0058 Score=47.17 Aligned_cols=17 Identities=35% Similarity=0.366 Sum_probs=15.3
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 41 ~~~l~G~nGsGKSTLl~ 57 (269)
T PRK14259 41 VTALIGPSGCGKSTVLR 57 (269)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 67899999999999974
No 167
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=94.99 E-value=0.0059 Score=44.78 Aligned_cols=16 Identities=38% Similarity=0.409 Sum_probs=15.1
Q ss_pred eEEEecccCCCccCCC
Q 033696 97 ATIITGFLGSGKNTGS 112 (113)
Q Consensus 97 vTIiTGfLGsGKtTLL 112 (113)
+++|+|..|+|||+||
T Consensus 26 ~~~i~G~NGsGKS~il 41 (220)
T PF02463_consen 26 LNVIVGPNGSGKSNIL 41 (220)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEEcCCCCCHHHHH
Confidence 8999999999999985
No 168
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=94.98 E-value=0.006 Score=44.84 Aligned_cols=18 Identities=39% Similarity=0.338 Sum_probs=15.9
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|.|..|+||||||+
T Consensus 36 e~~~l~G~nGsGKStLl~ 53 (194)
T cd03213 36 ELTAIMGPSGAGKSTLLN 53 (194)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 378899999999999974
No 169
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=94.96 E-value=0.0087 Score=45.64 Aligned_cols=17 Identities=35% Similarity=0.544 Sum_probs=15.2
Q ss_pred ceEEEecccCCCccCCC
Q 033696 96 PATIITGFLGSGKNTGS 112 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLL 112 (113)
-|.++.|-||||||||.
T Consensus 26 ~Vv~L~GdLGAGKTtf~ 42 (149)
T COG0802 26 DVVLLSGDLGAGKTTLV 42 (149)
T ss_pred CEEEEEcCCcCChHHHH
Confidence 48899999999999983
No 170
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.96 E-value=0.006 Score=46.58 Aligned_cols=17 Identities=35% Similarity=0.329 Sum_probs=15.5
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 44 ~~~i~G~nGsGKSTLl~ 60 (265)
T PRK14252 44 VTALIGPSGCGKSTFLR 60 (265)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 78899999999999974
No 171
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=94.93 E-value=0.0069 Score=46.15 Aligned_cols=18 Identities=33% Similarity=0.204 Sum_probs=16.5
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-+++|||..|+||||||+
T Consensus 31 ~~~~l~Gpn~sGKstllr 48 (216)
T cd03284 31 QILLITGPNMAGKSTYLR 48 (216)
T ss_pred eEEEEECCCCCChHHHHH
Confidence 789999999999999974
No 172
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=94.93 E-value=0.0062 Score=46.22 Aligned_cols=18 Identities=39% Similarity=0.246 Sum_probs=15.8
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|.|..||||||||+
T Consensus 33 e~~~i~G~nGsGKSTLl~ 50 (258)
T PRK11701 33 EVLGIVGESGSGKTTLLN 50 (258)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 378899999999999974
No 173
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=94.92 E-value=0.0063 Score=47.83 Aligned_cols=18 Identities=28% Similarity=0.215 Sum_probs=15.8
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
=++.|.|..||||||||+
T Consensus 31 e~~~l~G~NGaGKSTLl~ 48 (303)
T TIGR01288 31 ECFGLLGPNGAGKSTIAR 48 (303)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 378899999999999974
No 174
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=94.91 E-value=0.0063 Score=47.00 Aligned_cols=18 Identities=39% Similarity=0.355 Sum_probs=15.9
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|.|..||||||||+
T Consensus 51 e~~~I~G~nGsGKSTLl~ 68 (271)
T PRK14238 51 EVTAIIGPSGCGKSTYIK 68 (271)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 378899999999999974
No 175
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=94.91 E-value=0.0063 Score=46.60 Aligned_cols=17 Identities=41% Similarity=0.372 Sum_probs=15.4
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 39 ~~~i~G~nGsGKSTLl~ 55 (265)
T PRK10575 39 VTGLIGHNGSGKSTLLK 55 (265)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 78899999999999974
No 176
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.90 E-value=0.0071 Score=48.22 Aligned_cols=17 Identities=41% Similarity=0.489 Sum_probs=15.5
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
+|.|||..|||||||++
T Consensus 23 ~~~vtGvSGsGKStL~~ 39 (261)
T cd03271 23 LTCVTGVSGSGKSSLIN 39 (261)
T ss_pred EEEEECCCCCchHHHHH
Confidence 78999999999999963
No 177
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.88 E-value=0.0066 Score=45.55 Aligned_cols=18 Identities=28% Similarity=0.268 Sum_probs=15.9
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|.|..|+||||||+
T Consensus 31 e~~~i~G~nGsGKSTLl~ 48 (252)
T PRK14272 31 TVNALIGPSGCGKTTFLR 48 (252)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 368899999999999974
No 178
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.87 E-value=0.0065 Score=47.35 Aligned_cols=17 Identities=41% Similarity=0.421 Sum_probs=15.6
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..|+||||||+
T Consensus 35 ~~~i~G~nGaGKSTLl~ 51 (279)
T PRK13635 35 WVAIVGHNGSGKSTLAK 51 (279)
T ss_pred EEEEECCCCCcHHHHHH
Confidence 78999999999999974
No 179
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=94.86 E-value=0.0066 Score=46.05 Aligned_cols=18 Identities=39% Similarity=0.302 Sum_probs=15.7
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|.|..|+||||||+
T Consensus 32 e~~~l~G~nGsGKSTLl~ 49 (257)
T PRK10619 32 DVISIIGSSGSGKSTFLR 49 (257)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 367899999999999974
No 180
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=94.83 E-value=0.0068 Score=50.30 Aligned_cols=18 Identities=17% Similarity=0.350 Sum_probs=16.0
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|.|..||||||||+
T Consensus 287 e~~~l~G~NGsGKSTLl~ 304 (500)
T TIGR02633 287 EILGVAGLVGAGRTELVQ 304 (500)
T ss_pred cEEEEeCCCCCCHHHHHH
Confidence 378899999999999974
No 181
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.83 E-value=0.0069 Score=47.38 Aligned_cols=18 Identities=39% Similarity=0.276 Sum_probs=15.9
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|.|..||||||||+
T Consensus 66 e~~~l~G~nGsGKSTLl~ 83 (286)
T PRK14275 66 YVTAIIGPSGCGKSTFLR 83 (286)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 378899999999999974
No 182
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.82 E-value=0.0069 Score=45.29 Aligned_cols=17 Identities=29% Similarity=0.188 Sum_probs=15.6
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..|+||||||+
T Consensus 28 ~~~i~G~nGsGKSTLl~ 44 (232)
T cd03300 28 FFTLLGPSGCGKTTLLR 44 (232)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 78999999999999974
No 183
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=94.82 E-value=0.0088 Score=44.35 Aligned_cols=17 Identities=35% Similarity=0.317 Sum_probs=15.8
Q ss_pred ceEEEecccCCCccCCC
Q 033696 96 PATIITGFLGSGKNTGS 112 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLL 112 (113)
|+++|+|..|+|||++|
T Consensus 23 ~~~~i~G~NGsGKSnil 39 (178)
T cd03239 23 SFNAIVGPNGSGKSNIV 39 (178)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 59999999999999986
No 184
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=94.80 E-value=0.007 Score=47.36 Aligned_cols=17 Identities=35% Similarity=0.348 Sum_probs=15.7
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 29 ~~~l~G~nGsGKSTLl~ 45 (272)
T PRK13547 29 VTALLGRNGAGKSTLLK 45 (272)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 78999999999999974
No 185
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=94.80 E-value=0.007 Score=46.34 Aligned_cols=18 Identities=28% Similarity=0.268 Sum_probs=15.8
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|.|..||||||||+
T Consensus 38 e~~~i~G~nGsGKSTLl~ 55 (265)
T TIGR02769 38 ETVGLLGRSGCGKSTLAR 55 (265)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 478899999999999974
No 186
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=94.78 E-value=0.0071 Score=46.00 Aligned_cols=18 Identities=33% Similarity=0.281 Sum_probs=15.9
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|.|..||||||||+
T Consensus 31 e~~~i~G~nGsGKSTLl~ 48 (262)
T PRK09984 31 EMVALLGPSGSGKSTLLR 48 (262)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 378999999999999974
No 187
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.78 E-value=0.0072 Score=47.12 Aligned_cols=18 Identities=28% Similarity=0.237 Sum_probs=16.2
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|.|..||||||||+
T Consensus 27 e~~~IvG~nGsGKSTLlk 44 (255)
T cd03236 27 QVLGLVGPNGIGKSTALK 44 (255)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 389999999999999975
No 188
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.76 E-value=0.0073 Score=45.99 Aligned_cols=17 Identities=41% Similarity=0.362 Sum_probs=15.3
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 35 ~~~l~G~nGsGKSTLlk 51 (259)
T PRK14260 35 VTAIIGPSGCGKSTFIK 51 (259)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 68899999999999974
No 189
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=94.74 E-value=0.0074 Score=46.53 Aligned_cols=18 Identities=28% Similarity=0.337 Sum_probs=15.9
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|+|..||||||||+
T Consensus 39 e~~~i~G~nGsGKSTLl~ 56 (268)
T PRK10419 39 ETVALLGRSGCGKSTLAR 56 (268)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 478999999999999963
No 190
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.71 E-value=0.0076 Score=46.74 Aligned_cols=17 Identities=41% Similarity=0.274 Sum_probs=15.5
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..|+||||||+
T Consensus 30 ~~~i~G~nGsGKSTLl~ 46 (274)
T PRK13644 30 YIGIIGKNGSGKSTLAL 46 (274)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 78899999999999974
No 191
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=94.71 E-value=0.0077 Score=46.24 Aligned_cols=18 Identities=33% Similarity=0.270 Sum_probs=15.8
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
=++-|.|..|+||||||+
T Consensus 37 e~~~i~G~nGsGKSTLl~ 54 (264)
T PRK14243 37 QITAFIGPSGCGKSTILR 54 (264)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 378899999999999974
No 192
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=94.70 E-value=0.0077 Score=49.84 Aligned_cols=18 Identities=28% Similarity=0.272 Sum_probs=15.9
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|.|..||||||||+
T Consensus 30 e~~~liG~nGsGKSTLl~ 47 (490)
T PRK10938 30 DSWAFVGANGSGKSALAR 47 (490)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 368899999999999974
No 193
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=94.66 E-value=0.008 Score=50.13 Aligned_cols=17 Identities=24% Similarity=0.350 Sum_probs=15.3
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 291 ~~~l~G~NGsGKSTLlk 307 (510)
T PRK09700 291 ILGFAGLVGSGRTELMN 307 (510)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 67899999999999974
No 194
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=94.66 E-value=0.008 Score=46.64 Aligned_cols=17 Identities=41% Similarity=0.409 Sum_probs=15.4
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 38 ~~~l~G~nGsGKSTLl~ 54 (280)
T PRK13633 38 FLVILGRNGSGKSTIAK 54 (280)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 68899999999999974
No 195
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.65 E-value=0.0081 Score=46.55 Aligned_cols=17 Identities=29% Similarity=0.264 Sum_probs=15.3
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 32 ~~~i~G~NGsGKSTLl~ 48 (277)
T PRK13652 32 RIAVIGPNGAGKSTLFR 48 (277)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 67899999999999974
No 196
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.64 E-value=0.0081 Score=46.88 Aligned_cols=17 Identities=35% Similarity=0.411 Sum_probs=15.3
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 35 ~~~iiG~NGaGKSTLl~ 51 (287)
T PRK13641 35 FVALVGHTGSGKSTLMQ 51 (287)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 67899999999999974
No 197
>PHA00547 hypothetical protein
Probab=94.64 E-value=0.01 Score=50.62 Aligned_cols=19 Identities=37% Similarity=0.513 Sum_probs=16.9
Q ss_pred CCceEEEecccCCCccCCC
Q 033696 94 RIPATIITGFLGSGKNTGS 112 (113)
Q Consensus 94 riPvTIiTGfLGsGKtTLL 112 (113)
.-|++++.|.||+|||+|+
T Consensus 74 ~spis~i~G~LGsGKTlLM 92 (337)
T PHA00547 74 DNPLSVIIGKLGTGKTLLL 92 (337)
T ss_pred cCCceEEeccCCCchhHHH
Confidence 4599999999999999874
No 198
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=94.60 E-value=0.0085 Score=49.74 Aligned_cols=19 Identities=47% Similarity=0.410 Sum_probs=16.8
Q ss_pred CceEEEecccCCCccCCCC
Q 033696 95 IPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 95 iPvTIiTGfLGsGKtTLLn 113 (113)
=-.++|+|..||||||+|+
T Consensus 134 ~glilI~GpTGSGKTTtL~ 152 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLLA 152 (358)
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 3689999999999999974
No 199
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=94.60 E-value=0.0092 Score=45.24 Aligned_cols=18 Identities=33% Similarity=0.320 Sum_probs=16.6
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
.++-|-|..||||||||+
T Consensus 26 ~i~~ivGpNGaGKSTll~ 43 (212)
T cd03274 26 SFSAIVGPNGSGKSNVID 43 (212)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 799999999999999974
No 200
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=94.58 E-value=0.0078 Score=49.99 Aligned_cols=18 Identities=39% Similarity=0.449 Sum_probs=15.8
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
--++|+|..|||||||||
T Consensus 163 ~nilI~G~tGSGKTTll~ 180 (344)
T PRK13851 163 LTMLLCGPTGSGKTTMSK 180 (344)
T ss_pred CeEEEECCCCccHHHHHH
Confidence 358999999999999975
No 201
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=94.56 E-value=0.0088 Score=48.49 Aligned_cols=19 Identities=42% Similarity=0.445 Sum_probs=16.7
Q ss_pred CceEEEecccCCCccCCCC
Q 033696 95 IPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 95 iPvTIiTGfLGsGKtTLLn 113 (113)
--+++|+|..||||||+|+
T Consensus 122 ~g~ili~G~tGSGKTT~l~ 140 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLA 140 (343)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3679999999999999974
No 202
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=94.56 E-value=0.0087 Score=44.28 Aligned_cols=18 Identities=44% Similarity=0.453 Sum_probs=15.9
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
=++.|.|..|+||||||+
T Consensus 32 ~~~~I~G~nGsGKStLl~ 49 (220)
T TIGR02982 32 EIVILTGPSGSGKTTLLT 49 (220)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 488999999999999964
No 203
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.53 E-value=0.009 Score=46.51 Aligned_cols=18 Identities=39% Similarity=0.344 Sum_probs=15.7
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|.|..|+||||||+
T Consensus 48 e~~~I~G~nGsGKSTLl~ 65 (276)
T PRK14271 48 AVTSLMGPTGSGKTTFLR 65 (276)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 367899999999999974
No 204
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.52 E-value=0.0093 Score=47.03 Aligned_cols=19 Identities=37% Similarity=0.368 Sum_probs=16.5
Q ss_pred CceEEEecccCCCccCCCC
Q 033696 95 IPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 95 iPvTIiTGfLGsGKtTLLn 113 (113)
--+++|+|.-||||||+|+
T Consensus 80 ~GlilisG~tGSGKTT~l~ 98 (264)
T cd01129 80 HGIILVTGPTGSGKTTTLY 98 (264)
T ss_pred CCEEEEECCCCCcHHHHHH
Confidence 3479999999999999874
No 205
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=94.50 E-value=0.0092 Score=46.99 Aligned_cols=17 Identities=29% Similarity=0.241 Sum_probs=15.4
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++-|.|..|+||||||+
T Consensus 30 i~~l~G~NGaGKTTLl~ 46 (301)
T TIGR03522 30 IVGFLGPNGAGKSTTMK 46 (301)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 78899999999999974
No 206
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=94.50 E-value=0.0093 Score=48.33 Aligned_cols=18 Identities=44% Similarity=0.337 Sum_probs=16.1
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|.|..||||||||+
T Consensus 24 ei~~l~G~nGsGKSTLl~ 41 (354)
T TIGR02142 24 GVTAIFGRSGSGKTTLIR 41 (354)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 388999999999999974
No 207
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=94.49 E-value=0.0086 Score=47.76 Aligned_cols=18 Identities=44% Similarity=0.409 Sum_probs=16.1
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-.++|+|..||||||||+
T Consensus 145 ~~ili~G~tGsGKTTll~ 162 (308)
T TIGR02788 145 KNIIISGGTGSGKTTFLK 162 (308)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 478999999999999974
No 208
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=94.49 E-value=0.0074 Score=45.97 Aligned_cols=19 Identities=37% Similarity=0.347 Sum_probs=16.4
Q ss_pred CceEEEecccCCCccCCCC
Q 033696 95 IPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 95 iPvTIiTGfLGsGKtTLLn 113 (113)
--.+||+|.-||||||+|+
T Consensus 127 ~~~ili~G~tGSGKTT~l~ 145 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLLN 145 (270)
T ss_dssp TEEEEEEESTTSSHHHHHH
T ss_pred ceEEEEECCCccccchHHH
Confidence 3578999999999999863
No 209
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.48 E-value=0.0092 Score=46.46 Aligned_cols=17 Identities=47% Similarity=0.454 Sum_probs=15.5
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 35 ~~~I~G~nGaGKSTLl~ 51 (282)
T PRK13640 35 WTALIGHNGSGKSTISK 51 (282)
T ss_pred EEEEECCCCCcHHHHHH
Confidence 78999999999999974
No 210
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=94.48 E-value=0.0093 Score=45.97 Aligned_cols=18 Identities=33% Similarity=0.276 Sum_probs=16.0
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
=++.|.|..||||||||+
T Consensus 52 e~~~I~G~nGsGKSTLl~ 69 (272)
T PRK14236 52 RVTAFIGPSGCGKSTLLR 69 (272)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 378999999999999974
No 211
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=94.47 E-value=0.0094 Score=44.83 Aligned_cols=17 Identities=35% Similarity=0.298 Sum_probs=15.3
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 28 ~~~l~G~nGsGKSTLl~ 44 (237)
T TIGR00968 28 LVALLGPSGSGKSTLLR 44 (237)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 78899999999999963
No 212
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=94.47 E-value=0.0095 Score=49.79 Aligned_cols=18 Identities=28% Similarity=0.180 Sum_probs=15.9
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
=++.|.|..||||||||+
T Consensus 27 e~~~iiG~nGsGKSTLl~ 44 (520)
T TIGR03269 27 EVLGILGRSGAGKSVLMH 44 (520)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 368899999999999974
No 213
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=94.47 E-value=0.012 Score=44.79 Aligned_cols=17 Identities=35% Similarity=0.411 Sum_probs=16.0
Q ss_pred ceEEEecccCCCccCCC
Q 033696 96 PATIITGFLGSGKNTGS 112 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLL 112 (113)
++++|+|..|+||||||
T Consensus 24 g~n~i~G~NgsGKS~ll 40 (213)
T cd03277 24 SLNMIIGPNGSGKSSIV 40 (213)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 68999999999999996
No 214
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=94.47 E-value=0.0081 Score=49.60 Aligned_cols=16 Identities=38% Similarity=0.306 Sum_probs=14.1
Q ss_pred EEEecccCCCccCCCC
Q 033696 98 TIITGFLGSGKNTGSA 113 (113)
Q Consensus 98 TIiTGfLGsGKtTLLn 113 (113)
-+|+|.+||||||||+
T Consensus 60 W~I~G~NGsGKTTLL~ 75 (257)
T COG1119 60 WAIVGPNGAGKTTLLS 75 (257)
T ss_pred EEEECCCCCCHHHHHH
Confidence 4789999999999974
No 215
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=94.44 E-value=0.012 Score=41.41 Aligned_cols=25 Identities=20% Similarity=0.193 Sum_probs=20.8
Q ss_pred CCCCCCCceEEEecccCCCccCCCC
Q 033696 89 IPPDNRIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 89 ~~~~~riPvTIiTGfLGsGKtTLLn 113 (113)
..+...+|-++|.|..|+|||||+|
T Consensus 18 ~~~~~~~~~v~ivG~~~~GKSsli~ 42 (196)
T PRK00454 18 QLPPDDGPEIAFAGRSNVGKSSLIN 42 (196)
T ss_pred hCCCCCCCEEEEEcCCCCCHHHHHH
Confidence 3445578889999999999999975
No 216
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=94.41 E-value=0.0099 Score=47.43 Aligned_cols=17 Identities=29% Similarity=0.147 Sum_probs=15.5
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
|+-+.|..||||||||+
T Consensus 33 i~gllG~NGAGKTTllk 49 (293)
T COG1131 33 IFGLLGPNGAGKTTLLK 49 (293)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 78899999999999974
No 217
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=94.40 E-value=0.0092 Score=49.33 Aligned_cols=16 Identities=44% Similarity=0.544 Sum_probs=14.7
Q ss_pred EEEecccCCCccCCCC
Q 033696 98 TIITGFLGSGKNTGSA 113 (113)
Q Consensus 98 TIiTGfLGsGKtTLLn 113 (113)
+||+|.-|||||||||
T Consensus 147 ilI~G~tGSGKTTll~ 162 (323)
T PRK13833 147 IVISGGTGSGKTTLAN 162 (323)
T ss_pred EEEECCCCCCHHHHHH
Confidence 5899999999999975
No 218
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.40 E-value=0.0099 Score=45.43 Aligned_cols=19 Identities=37% Similarity=0.277 Sum_probs=16.4
Q ss_pred CceEEEecccCCCccCCCC
Q 033696 95 IPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 95 iPvTIiTGfLGsGKtTLLn 113 (113)
=-++.|.|..|+||||||+
T Consensus 33 Ge~~~I~G~nGsGKSTLl~ 51 (261)
T PRK14258 33 SKVTAIIGPSGCGKSTFLK 51 (261)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3478899999999999974
No 219
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=94.38 E-value=0.01 Score=49.51 Aligned_cols=18 Identities=28% Similarity=0.252 Sum_probs=15.9
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
=++.|.|..||||||||+
T Consensus 32 e~~~liG~nGsGKSTLl~ 49 (510)
T PRK09700 32 EIHALLGENGAGKSTLMK 49 (510)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 378899999999999974
No 220
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=94.38 E-value=0.01 Score=49.58 Aligned_cols=17 Identities=24% Similarity=0.397 Sum_probs=15.5
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 290 ~~~l~G~NGsGKSTLlk 306 (506)
T PRK13549 290 ILGIAGLVGAGRTELVQ 306 (506)
T ss_pred EEEEeCCCCCCHHHHHH
Confidence 78899999999999974
No 221
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=94.38 E-value=0.01 Score=49.57 Aligned_cols=17 Identities=29% Similarity=0.278 Sum_probs=15.5
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 33 ~~~l~G~nGsGKSTLl~ 49 (506)
T PRK13549 33 IVSLCGENGAGKSTLMK 49 (506)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 78899999999999974
No 222
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.37 E-value=0.01 Score=46.15 Aligned_cols=18 Identities=39% Similarity=0.353 Sum_probs=15.9
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|.|..||||||||+
T Consensus 34 e~~~i~G~nGsGKSTLl~ 51 (279)
T PRK13650 34 EWLSIIGHNGSGKSTTVR 51 (279)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 478899999999999974
No 223
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=94.37 E-value=0.01 Score=48.14 Aligned_cols=18 Identities=33% Similarity=0.287 Sum_probs=16.1
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|.|..||||||||+
T Consensus 25 e~~~l~G~nGsGKSTLl~ 42 (352)
T PRK11144 25 GITAIFGRSGAGKTSLIN 42 (352)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 389999999999999974
No 224
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.35 E-value=0.01 Score=46.27 Aligned_cols=17 Identities=41% Similarity=0.343 Sum_probs=15.4
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 35 ~~~i~G~nGsGKSTLl~ 51 (286)
T PRK13646 35 YYAIVGQTGSGKSTLIQ 51 (286)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 78899999999999974
No 225
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=94.34 E-value=0.01 Score=48.62 Aligned_cols=18 Identities=28% Similarity=0.276 Sum_probs=16.0
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|.|..||||||||+
T Consensus 30 e~~~l~G~nGsGKSTLL~ 47 (369)
T PRK11000 30 EFVVFVGPSGCGKSTLLR 47 (369)
T ss_pred CEEEEECCCCCcHHHHHH
Confidence 378999999999999974
No 226
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=94.34 E-value=0.011 Score=49.06 Aligned_cols=17 Identities=35% Similarity=0.259 Sum_probs=15.2
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 288 ~~~i~G~NGsGKSTLl~ 304 (490)
T PRK10938 288 HWQIVGPNGAGKSTLLS 304 (490)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 67899999999999974
No 227
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=94.33 E-value=0.011 Score=46.30 Aligned_cols=18 Identities=39% Similarity=0.394 Sum_probs=15.7
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|.|..||||||||+
T Consensus 51 e~~~liG~NGsGKSTLlk 68 (264)
T PRK13546 51 DVIGLVGINGSGKSTLSN 68 (264)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 467899999999999974
No 228
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=94.32 E-value=0.011 Score=47.92 Aligned_cols=18 Identities=28% Similarity=0.202 Sum_probs=15.7
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
=++.|.|..||||||||+
T Consensus 32 ei~~iiG~nGsGKSTLlk 49 (343)
T PRK11153 32 EIFGVIGASGAGKSTLIR 49 (343)
T ss_pred CEEEEECCCCCcHHHHHH
Confidence 367899999999999974
No 229
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.32 E-value=0.013 Score=45.46 Aligned_cols=17 Identities=24% Similarity=0.229 Sum_probs=15.6
Q ss_pred ceEEEecccCCCccCCC
Q 033696 96 PATIITGFLGSGKNTGS 112 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLL 112 (113)
.+++|+|..|+||||+|
T Consensus 22 ~~~~i~G~NGsGKS~ll 38 (270)
T cd03242 22 GVTVLVGENAQGKTNLL 38 (270)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 58999999999999985
No 230
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.32 E-value=0.011 Score=46.41 Aligned_cols=18 Identities=33% Similarity=0.301 Sum_probs=15.8
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|.|..|+||||||+
T Consensus 66 e~~~I~G~nGsGKSTLl~ 83 (285)
T PRK14254 66 QVTAMIGPSGCGKSTFLR 83 (285)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 478899999999999974
No 231
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=94.31 E-value=0.01 Score=48.73 Aligned_cols=17 Identities=35% Similarity=0.382 Sum_probs=15.4
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
-++|+|.-|||||||||
T Consensus 162 nili~G~tgSGKTTll~ 178 (332)
T PRK13900 162 NIIISGGTSTGKTTFTN 178 (332)
T ss_pred cEEEECCCCCCHHHHHH
Confidence 58999999999999975
No 232
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.29 E-value=0.011 Score=45.57 Aligned_cols=17 Identities=35% Similarity=0.241 Sum_probs=15.4
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..|+||||||+
T Consensus 36 ~~~i~G~nGsGKSTLl~ 52 (261)
T PRK14263 36 ITGFIGPSGCGKSTVLR 52 (261)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 78899999999999974
No 233
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=94.23 E-value=0.011 Score=49.23 Aligned_cols=17 Identities=29% Similarity=0.331 Sum_probs=15.4
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 32 ~~~l~G~NGsGKSTLl~ 48 (501)
T PRK10762 32 VMALVGENGAGKSTMMK 48 (501)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 78899999999999974
No 234
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=94.23 E-value=0.012 Score=49.54 Aligned_cols=18 Identities=28% Similarity=0.244 Sum_probs=15.9
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
=++.|.|..||||||||+
T Consensus 38 e~~~liG~NGsGKSTLl~ 55 (510)
T PRK15439 38 EVHALLGGNGAGKSTLMK 55 (510)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 368899999999999974
No 235
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.22 E-value=0.014 Score=45.49 Aligned_cols=17 Identities=35% Similarity=0.409 Sum_probs=15.6
Q ss_pred ceEEEecccCCCccCCC
Q 033696 96 PATIITGFLGSGKNTGS 112 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLL 112 (113)
..++|+|..|||||++|
T Consensus 22 ~~~~i~G~nGsGKS~il 38 (276)
T cd03241 22 GLTVLTGETGAGKSILL 38 (276)
T ss_pred CeEEEEcCCCCCHHHHH
Confidence 47999999999999986
No 236
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=94.18 E-value=0.015 Score=44.26 Aligned_cols=18 Identities=39% Similarity=0.373 Sum_probs=16.4
Q ss_pred CceEEEecccCCCccCCC
Q 033696 95 IPATIITGFLGSGKNTGS 112 (113)
Q Consensus 95 iPvTIiTGfLGsGKtTLL 112 (113)
-+++.|.|..||||||||
T Consensus 25 ~~~~~IvG~NGsGKStll 42 (251)
T cd03273 25 PQFNAITGLNGSGKSNIL 42 (251)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 468999999999999996
No 237
>PRK10646 ADP-binding protein; Provisional
Probab=94.18 E-value=0.016 Score=43.72 Aligned_cols=16 Identities=44% Similarity=0.486 Sum_probs=14.6
Q ss_pred eEEEecccCCCccCCC
Q 033696 97 ATIITGFLGSGKNTGS 112 (113)
Q Consensus 97 vTIiTGfLGsGKtTLL 112 (113)
|..+.|-||+|||||.
T Consensus 30 vi~L~GdLGaGKTtf~ 45 (153)
T PRK10646 30 VIYLYGDLGAGKTTFS 45 (153)
T ss_pred EEEEECCCCCCHHHHH
Confidence 7889999999999983
No 238
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=94.18 E-value=0.022 Score=46.89 Aligned_cols=17 Identities=29% Similarity=0.192 Sum_probs=15.7
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
|+-+-|++|||||||+|
T Consensus 32 i~~LIGPNGAGKTTlfN 48 (250)
T COG0411 32 IVGLIGPNGAGKTTLFN 48 (250)
T ss_pred EEEEECCCCCCceeeee
Confidence 78889999999999987
No 239
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.17 E-value=0.014 Score=44.03 Aligned_cols=21 Identities=33% Similarity=0.316 Sum_probs=17.6
Q ss_pred CCCCceEEEecccCCCccCCC
Q 033696 92 DNRIPATIITGFLGSGKNTGS 112 (113)
Q Consensus 92 ~~riPvTIiTGfLGsGKtTLL 112 (113)
..+.-++.|.|..|||||||.
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~ 50 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLA 50 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHH
Confidence 345678889999999999985
No 240
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=94.15 E-value=0.012 Score=49.34 Aligned_cols=17 Identities=29% Similarity=0.186 Sum_probs=15.4
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 29 ~~~liG~NGsGKSTLl~ 45 (530)
T PRK15064 29 RYGLIGANGCGKSTFMK 45 (530)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 68899999999999974
No 241
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=94.15 E-value=0.013 Score=49.79 Aligned_cols=17 Identities=29% Similarity=0.309 Sum_probs=15.5
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 33 ~~~liG~NGsGKSTLl~ 49 (552)
T TIGR03719 33 KIGVLGLNGAGKSTLLR 49 (552)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 68899999999999974
No 242
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=94.11 E-value=0.013 Score=47.73 Aligned_cols=17 Identities=35% Similarity=0.331 Sum_probs=15.4
Q ss_pred ceEEEecccCCCccCCC
Q 033696 96 PATIITGFLGSGKNTGS 112 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLL 112 (113)
=++.|.|++|||||||+
T Consensus 31 ~~~~iiGPNGaGKSTLl 47 (254)
T COG1121 31 EITALIGPNGAGKSTLL 47 (254)
T ss_pred cEEEEECCCCCCHHHHH
Confidence 47899999999999996
No 243
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.11 E-value=0.012 Score=45.61 Aligned_cols=17 Identities=35% Similarity=0.311 Sum_probs=15.3
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++-|.|..||||||||+
T Consensus 33 ~~~i~G~nGsGKSTLl~ 49 (274)
T PRK13647 33 KTALLGPNGAGKSTLLL 49 (274)
T ss_pred EEEEECCCCCcHHHHHH
Confidence 78899999999999964
No 244
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=94.09 E-value=0.016 Score=43.45 Aligned_cols=17 Identities=35% Similarity=0.368 Sum_probs=15.5
Q ss_pred ceEEEecccCCCccCCC
Q 033696 96 PATIITGFLGSGKNTGS 112 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLL 112 (113)
.+++|.|..|+||||||
T Consensus 22 gl~~i~G~NGsGKStll 38 (198)
T cd03276 22 RVNFIVGNNGSGKSAIL 38 (198)
T ss_pred CeEEEECCCCCcHHHHH
Confidence 48899999999999986
No 245
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.08 E-value=0.012 Score=47.37 Aligned_cols=17 Identities=35% Similarity=0.454 Sum_probs=15.1
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
-++|+|.-|||||||||
T Consensus 134 ~ilI~G~tGSGKTTll~ 150 (299)
T TIGR02782 134 NILVVGGTGSGKTTLAN 150 (299)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 46899999999999974
No 246
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=94.07 E-value=0.013 Score=48.97 Aligned_cols=17 Identities=18% Similarity=0.405 Sum_probs=15.5
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 280 ~~~liG~NGsGKSTLl~ 296 (501)
T PRK10762 280 ILGVSGLMGAGRTELMK 296 (501)
T ss_pred EEEEecCCCCCHHHHHH
Confidence 78899999999999974
No 247
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=94.07 E-value=0.013 Score=49.25 Aligned_cols=17 Identities=35% Similarity=0.231 Sum_probs=15.3
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 347 ~~~l~G~NGsGKSTLl~ 363 (530)
T PRK15064 347 RLAIIGENGVGKTTLLR 363 (530)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 67899999999999974
No 248
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=94.06 E-value=0.013 Score=48.94 Aligned_cols=17 Identities=18% Similarity=0.341 Sum_probs=15.4
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 281 ~~~iiG~NGsGKSTLlk 297 (501)
T PRK11288 281 IVGLFGLVGAGRSELMK 297 (501)
T ss_pred EEEEEcCCCCCHHHHHH
Confidence 78899999999999974
No 249
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=94.06 E-value=0.013 Score=49.78 Aligned_cols=17 Identities=29% Similarity=0.309 Sum_probs=15.3
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 35 ~~~iiG~NGsGKSTLlk 51 (556)
T PRK11819 35 KIGVLGLNGAGKSTLLR 51 (556)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 68899999999999974
No 250
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=94.06 E-value=0.013 Score=49.18 Aligned_cols=18 Identities=17% Similarity=0.351 Sum_probs=15.8
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
=++.|.|..||||||||+
T Consensus 290 e~~~l~G~NGsGKSTLl~ 307 (510)
T PRK15439 290 EILGLAGVVGAGRTELAE 307 (510)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 378899999999999974
No 251
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=94.05 E-value=0.013 Score=48.97 Aligned_cols=17 Identities=41% Similarity=0.329 Sum_probs=15.5
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 312 ~~~l~G~NGsGKSTLl~ 328 (520)
T TIGR03269 312 IFGIVGTSGAGKTTLSK 328 (520)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 78899999999999974
No 252
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=94.01 E-value=0.013 Score=49.12 Aligned_cols=17 Identities=35% Similarity=0.360 Sum_probs=15.4
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 314 ~~~i~G~nGsGKSTLlk 330 (529)
T PRK15134 314 TLGLVGESGSGKSTTGL 330 (529)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 68899999999999974
No 253
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=93.93 E-value=0.014 Score=46.31 Aligned_cols=17 Identities=41% Similarity=0.386 Sum_probs=15.4
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 65 ~~~liG~NGsGKSTLl~ 81 (282)
T cd03291 65 MLAITGSTGSGKTSLLM 81 (282)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 68899999999999974
No 254
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=93.93 E-value=0.014 Score=48.41 Aligned_cols=17 Identities=29% Similarity=0.251 Sum_probs=15.5
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 29 ~~~liG~nGsGKSTLl~ 45 (500)
T TIGR02633 29 CVGLCGENGAGKSTLMK 45 (500)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 78899999999999974
No 255
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=93.93 E-value=0.014 Score=48.43 Aligned_cols=17 Identities=29% Similarity=0.276 Sum_probs=15.5
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 26 ~~~liG~nGsGKSTLl~ 42 (491)
T PRK10982 26 IHALMGENGAGKSTLLK 42 (491)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 78899999999999974
No 256
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=93.92 E-value=0.014 Score=46.57 Aligned_cols=17 Identities=41% Similarity=0.335 Sum_probs=15.3
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++-|.|..||||||||+
T Consensus 35 ~v~iiG~nGsGKSTLl~ 51 (305)
T PRK13651 35 FIAIIGQTGSGKTTFIE 51 (305)
T ss_pred EEEEECCCCCcHHHHHH
Confidence 67899999999999974
No 257
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.91 E-value=0.014 Score=45.73 Aligned_cols=17 Identities=41% Similarity=0.411 Sum_probs=15.4
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 35 ~~~i~G~nGsGKSTLl~ 51 (290)
T PRK13634 35 YVAIIGHTGSGKSTLLQ 51 (290)
T ss_pred EEEEECCCCCcHHHHHH
Confidence 78899999999999974
No 258
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=93.88 E-value=0.015 Score=48.57 Aligned_cols=17 Identities=29% Similarity=0.294 Sum_probs=15.5
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 32 ~~~l~G~nGsGKSTLl~ 48 (501)
T PRK11288 32 VHALMGENGAGKSTLLK 48 (501)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 78999999999999974
No 259
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.86 E-value=0.015 Score=45.05 Aligned_cols=17 Identities=29% Similarity=0.243 Sum_probs=15.3
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 30 ~~~l~G~nGsGKSTLl~ 46 (275)
T PRK13639 30 MVALLGPNGAGKSTLFL 46 (275)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 78899999999999963
No 260
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=93.86 E-value=0.012 Score=41.44 Aligned_cols=20 Identities=25% Similarity=0.230 Sum_probs=16.6
Q ss_pred CCceEEEecccCCCccCCCC
Q 033696 94 RIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 94 riPvTIiTGfLGsGKtTLLn 113 (113)
.-..++|+|.-|+|||+||+
T Consensus 19 ~~~~~~l~G~rg~GKTsLl~ 38 (234)
T PF01637_consen 19 PSQHILLYGPRGSGKTSLLK 38 (234)
T ss_dssp -SSEEEEEESTTSSHHHHHH
T ss_pred cCcEEEEEcCCcCCHHHHHH
Confidence 45679999999999999863
No 261
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.86 E-value=0.018 Score=52.78 Aligned_cols=17 Identities=41% Similarity=0.528 Sum_probs=16.3
Q ss_pred ceEEEecccCCCccCCC
Q 033696 96 PATIITGFLGSGKNTGS 112 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLL 112 (113)
++++|+|..||||||||
T Consensus 27 gl~~I~G~nGaGKSTil 43 (1042)
T TIGR00618 27 PIFLICGKTGAGKTTLL 43 (1042)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 89999999999999986
No 262
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=93.84 E-value=0.015 Score=50.76 Aligned_cols=20 Identities=35% Similarity=0.471 Sum_probs=17.8
Q ss_pred CCceEEEecccCCCccCCCC
Q 033696 94 RIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 94 riPvTIiTGfLGsGKtTLLn 113 (113)
.-|+++|.|..|+||||||+
T Consensus 27 ~~~~~~i~G~Ng~GKttll~ 46 (650)
T TIGR03185 27 PKPIILIGGLNGAGKTTLLD 46 (650)
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 36799999999999999974
No 263
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.82 E-value=0.015 Score=45.95 Aligned_cols=18 Identities=33% Similarity=0.318 Sum_probs=15.7
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|.|..||||||||+
T Consensus 72 e~~~IvG~nGsGKSTLl~ 89 (305)
T PRK14264 72 SVTALIGPSGCGKSTFLR 89 (305)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 367899999999999974
No 264
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.81 E-value=0.015 Score=45.04 Aligned_cols=18 Identities=39% Similarity=0.370 Sum_probs=15.7
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++-|.|..||||||||+
T Consensus 34 e~~~I~G~nGsGKSTLl~ 51 (277)
T PRK13642 34 EWVSIIGQNGSGKSTTAR 51 (277)
T ss_pred CEEEEECCCCCcHHHHHH
Confidence 368899999999999963
No 265
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=93.81 E-value=0.015 Score=44.32 Aligned_cols=17 Identities=41% Similarity=0.360 Sum_probs=15.3
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 49 ~~~i~G~nGsGKSTLl~ 65 (257)
T cd03288 49 KVGICGRTGSGKSSLSL 65 (257)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 68899999999999974
No 266
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.79 E-value=0.017 Score=44.03 Aligned_cols=19 Identities=42% Similarity=0.184 Sum_probs=16.7
Q ss_pred CceEEEecccCCCccCCCC
Q 033696 95 IPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 95 iPvTIiTGfLGsGKtTLLn 113 (113)
.-+++|||..|+||||||+
T Consensus 29 ~~~~~l~G~n~~GKstll~ 47 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLK 47 (204)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4689999999999999863
No 267
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=93.78 E-value=0.016 Score=48.75 Aligned_cols=17 Identities=29% Similarity=0.397 Sum_probs=15.3
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 37 ~~~iiG~nGsGKSTLl~ 53 (529)
T PRK15134 37 TLALVGESGSGKSVTAL 53 (529)
T ss_pred EEEEECCCCCcHHHHHH
Confidence 68899999999999974
No 268
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.77 E-value=0.016 Score=44.61 Aligned_cols=18 Identities=39% Similarity=0.226 Sum_probs=16.0
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|.|..||||||||+
T Consensus 37 e~~~i~G~nGsGKSTLl~ 54 (257)
T PRK14246 37 SIFGIMGPSGSGKSTLLK 54 (257)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 478999999999999974
No 269
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=93.74 E-value=0.019 Score=43.53 Aligned_cols=16 Identities=44% Similarity=0.640 Sum_probs=14.9
Q ss_pred eEEEecccCCCccCCC
Q 033696 97 ATIITGFLGSGKNTGS 112 (113)
Q Consensus 97 vTIiTGfLGsGKtTLL 112 (113)
++-|+|..|||||||+
T Consensus 23 ~~~l~G~sGsGKSTL~ 38 (226)
T cd03270 23 LVVITGVSGSGKSSLA 38 (226)
T ss_pred EEEEEcCCCCCHHHHH
Confidence 7889999999999995
No 270
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.74 E-value=0.016 Score=45.45 Aligned_cols=17 Identities=41% Similarity=0.436 Sum_probs=15.3
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 34 ~v~i~G~nGsGKSTLl~ 50 (288)
T PRK13643 34 YTALIGHTGSGKSTLLQ 50 (288)
T ss_pred EEEEECCCCChHHHHHH
Confidence 67899999999999974
No 271
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=93.71 E-value=0.017 Score=49.07 Aligned_cols=17 Identities=29% Similarity=0.200 Sum_probs=15.2
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 350 ~~~l~G~NGsGKSTLl~ 366 (552)
T TIGR03719 350 IVGVIGPNGAGKSTLFR 366 (552)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 67899999999999974
No 272
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.64 E-value=0.017 Score=45.23 Aligned_cols=17 Identities=35% Similarity=0.319 Sum_probs=15.3
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 35 ~~~i~G~nGaGKSTLl~ 51 (287)
T PRK13637 35 FVGLIGHTGSGKSTLIQ 51 (287)
T ss_pred EEEEECCCCCcHHHHHH
Confidence 78899999999999974
No 273
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.63 E-value=0.017 Score=46.47 Aligned_cols=17 Identities=41% Similarity=0.399 Sum_probs=15.4
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++-|.|..||||||||+
T Consensus 54 ~~~I~G~nGsGKSTLl~ 70 (320)
T PRK13631 54 IYFIIGNSGSGKSTLVT 70 (320)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 68899999999999974
No 274
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.61 E-value=0.018 Score=43.33 Aligned_cols=16 Identities=38% Similarity=0.333 Sum_probs=14.9
Q ss_pred eEEEecccCCCccCCC
Q 033696 97 ATIITGFLGSGKNTGS 112 (113)
Q Consensus 97 vTIiTGfLGsGKtTLL 112 (113)
++.|.|..|+||||||
T Consensus 27 ~~~i~G~nG~GKStLl 42 (235)
T cd03299 27 YFVILGPTGSGKSVLL 42 (235)
T ss_pred EEEEECCCCCCHHHHH
Confidence 7889999999999996
No 275
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=93.61 E-value=0.016 Score=48.75 Aligned_cols=17 Identities=41% Similarity=0.528 Sum_probs=15.6
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 56 i~~LvG~NGsGKSTLLr 72 (400)
T PRK10070 56 IFVIMGLSGSGKSTMVR 72 (400)
T ss_pred EEEEECCCCchHHHHHH
Confidence 78999999999999974
No 276
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=93.61 E-value=0.018 Score=49.05 Aligned_cols=17 Identities=35% Similarity=0.221 Sum_probs=15.2
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 352 ~~~l~G~NGsGKSTLl~ 368 (556)
T PRK11819 352 IVGIIGPNGAGKSTLFK 368 (556)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 67899999999999974
No 277
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.60 E-value=0.022 Score=46.84 Aligned_cols=19 Identities=37% Similarity=0.361 Sum_probs=16.3
Q ss_pred CCceEEEecccCCCccCCC
Q 033696 94 RIPATIITGFLGSGKNTGS 112 (113)
Q Consensus 94 riPvTIiTGfLGsGKtTLL 112 (113)
+==|+.|-|..||||||||
T Consensus 27 ~Gevv~iiGpSGSGKSTlL 45 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLL 45 (240)
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3358899999999999996
No 278
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=93.56 E-value=0.019 Score=48.32 Aligned_cols=17 Identities=47% Similarity=0.520 Sum_probs=15.4
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
.++|+|.-||||||+|+
T Consensus 151 lilI~G~TGSGKTT~l~ 167 (372)
T TIGR02525 151 LGLICGETGSGKSTLAA 167 (372)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 68999999999999974
No 279
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=93.55 E-value=0.018 Score=47.22 Aligned_cols=17 Identities=29% Similarity=0.325 Sum_probs=15.5
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 32 ~~~llG~sGsGKSTLLr 48 (356)
T PRK11650 32 FIVLVGPSGCGKSTLLR 48 (356)
T ss_pred EEEEECCCCCcHHHHHH
Confidence 78899999999999974
No 280
>PLN02200 adenylate kinase family protein
Probab=93.54 E-value=0.039 Score=42.83 Aligned_cols=16 Identities=44% Similarity=0.424 Sum_probs=14.2
Q ss_pred ceEEEecccCCCccCC
Q 033696 96 PATIITGFLGSGKNTG 111 (113)
Q Consensus 96 PvTIiTGfLGsGKtTL 111 (113)
.+++|+|..||||||+
T Consensus 44 ~ii~I~G~PGSGKsT~ 59 (234)
T PLN02200 44 FITFVLGGPGSGKGTQ 59 (234)
T ss_pred EEEEEECCCCCCHHHH
Confidence 4678899999999997
No 281
>PHA02562 46 endonuclease subunit; Provisional
Probab=93.54 E-value=0.022 Score=47.36 Aligned_cols=18 Identities=44% Similarity=0.547 Sum_probs=16.7
Q ss_pred CceEEEecccCCCccCCC
Q 033696 95 IPATIITGFLGSGKNTGS 112 (113)
Q Consensus 95 iPvTIiTGfLGsGKtTLL 112 (113)
.++++|+|..|+||||||
T Consensus 27 ~g~~~i~G~NG~GKStll 44 (562)
T PHA02562 27 VKKTLITGKNGAGKSTML 44 (562)
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 489999999999999986
No 282
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=93.49 E-value=0.019 Score=45.67 Aligned_cols=17 Identities=29% Similarity=0.233 Sum_probs=15.3
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++-+.|..||||||||+
T Consensus 35 i~gllGpNGaGKSTLl~ 51 (306)
T PRK13537 35 CFGLLGPNGAGKTTTLR 51 (306)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 78899999999999963
No 283
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.45 E-value=0.021 Score=43.80 Aligned_cols=19 Identities=37% Similarity=0.195 Sum_probs=16.9
Q ss_pred CCceEEEecccCCCccCCC
Q 033696 94 RIPATIITGFLGSGKNTGS 112 (113)
Q Consensus 94 riPvTIiTGfLGsGKtTLL 112 (113)
+-.+++|||..|+||||||
T Consensus 29 ~~~~~~l~G~n~~GKstll 47 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYI 47 (222)
T ss_pred CCeEEEEECCCCCChHHHH
Confidence 4569999999999999986
No 284
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=93.44 E-value=0.025 Score=46.12 Aligned_cols=20 Identities=40% Similarity=0.635 Sum_probs=16.1
Q ss_pred CCCceEE-EecccCCCccCCC
Q 033696 93 NRIPATI-ITGFLGSGKNTGS 112 (113)
Q Consensus 93 ~riPvTI-iTGfLGsGKtTLL 112 (113)
.+.|.+| |.|..|||||||.
T Consensus 59 ~~~p~IIGIaG~~GSGKSTla 79 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTA 79 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHH
Confidence 4556555 9999999999984
No 285
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=93.43 E-value=0.02 Score=50.07 Aligned_cols=18 Identities=28% Similarity=0.204 Sum_probs=15.7
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|.|..||||||||+
T Consensus 339 e~~~l~G~NGsGKSTLlk 356 (638)
T PRK10636 339 SRIGLLGRNGAGKSTLIK 356 (638)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 367899999999999974
No 286
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=93.40 E-value=0.02 Score=46.91 Aligned_cols=17 Identities=29% Similarity=0.221 Sum_probs=15.7
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 32 ~~~l~GpsGsGKSTLLr 48 (353)
T TIGR03265 32 FVCLLGPSGCGKTTLLR 48 (353)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 88999999999999974
No 287
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=93.36 E-value=0.027 Score=49.23 Aligned_cols=17 Identities=35% Similarity=0.233 Sum_probs=15.7
Q ss_pred ceEEEecccCCCccCCC
Q 033696 96 PATIITGFLGSGKNTGS 112 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLL 112 (113)
.++.|+|..||||||||
T Consensus 24 ~~~~i~G~NGsGKS~ll 40 (1179)
T TIGR02168 24 GITGIVGPNGCGKSNIV 40 (1179)
T ss_pred CcEEEECCCCCChhHHH
Confidence 38999999999999986
No 288
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=93.34 E-value=0.021 Score=47.47 Aligned_cols=18 Identities=17% Similarity=0.228 Sum_probs=15.7
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
=++-|.|..||||||||+
T Consensus 275 e~~~l~G~nGsGKSTLl~ 292 (491)
T PRK10982 275 EILGIAGLVGAKRTDIVE 292 (491)
T ss_pred cEEEEecCCCCCHHHHHH
Confidence 378899999999999964
No 289
>COG3950 Predicted ATP-binding protein involved in virulence [General function prediction only]
Probab=93.31 E-value=0.03 Score=49.24 Aligned_cols=17 Identities=53% Similarity=0.522 Sum_probs=15.5
Q ss_pred ceEEEecccCCCccCCC
Q 033696 96 PATIITGFLGSGKNTGS 112 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLL 112 (113)
-.|||+|..||||||+|
T Consensus 25 ~ttIivgpNGsGKTtvL 41 (440)
T COG3950 25 ETTIIVGPNGSGKTTVL 41 (440)
T ss_pred ceEEEECCCCCChhhHH
Confidence 37999999999999986
No 290
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=93.31 E-value=0.021 Score=46.90 Aligned_cols=17 Identities=29% Similarity=0.229 Sum_probs=15.3
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++-|.|..||||||||+
T Consensus 33 i~gIiG~sGaGKSTLlr 49 (343)
T TIGR02314 33 IYGVIGASGAGKSTLIR 49 (343)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 68899999999999974
No 291
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.30 E-value=0.021 Score=44.49 Aligned_cols=17 Identities=41% Similarity=0.323 Sum_probs=15.4
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..|+||||||+
T Consensus 34 ~~~i~G~nGaGKSTLl~ 50 (283)
T PRK13636 34 VTAILGGNGAGKSTLFQ 50 (283)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 78899999999999974
No 292
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=93.29 E-value=0.021 Score=46.84 Aligned_cols=18 Identities=28% Similarity=0.270 Sum_probs=16.0
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|.|..||||||||+
T Consensus 33 e~~~llGpsGsGKSTLLr 50 (351)
T PRK11432 33 TMVTLLGPSGCGKTTVLR 50 (351)
T ss_pred CEEEEECCCCCcHHHHHH
Confidence 388999999999999974
No 293
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=93.28 E-value=0.02 Score=46.91 Aligned_cols=18 Identities=33% Similarity=0.362 Sum_probs=15.4
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
--++|+|.-|||||||||
T Consensus 149 ~~ilI~G~tGSGKTTll~ 166 (319)
T PRK13894 149 RNILVIGGTGSGKTTLVN 166 (319)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 357888999999999975
No 294
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=93.26 E-value=0.022 Score=46.48 Aligned_cols=18 Identities=28% Similarity=0.215 Sum_probs=16.0
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++-+.|..||||||||+
T Consensus 68 ei~gLlGpNGaGKSTLl~ 85 (340)
T PRK13536 68 ECFGLLGPNGAGKSTIAR 85 (340)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 478899999999999974
No 295
>PRK02224 chromosome segregation protein; Provisional
Probab=93.25 E-value=0.026 Score=49.84 Aligned_cols=17 Identities=41% Similarity=0.511 Sum_probs=16.1
Q ss_pred ceEEEecccCCCccCCC
Q 033696 96 PATIITGFLGSGKNTGS 112 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLL 112 (113)
++++|+|..||||||||
T Consensus 24 g~~~i~G~Ng~GKStil 40 (880)
T PRK02224 24 GVTVIHGVNGSGKSSLL 40 (880)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 69999999999999986
No 296
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=93.19 E-value=0.022 Score=47.29 Aligned_cols=17 Identities=29% Similarity=0.227 Sum_probs=15.7
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 42 ~~~LlGpsGsGKSTLLr 58 (375)
T PRK09452 42 FLTLLGPSGCGKTTVLR 58 (375)
T ss_pred EEEEECCCCCcHHHHHH
Confidence 88999999999999974
No 297
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=93.19 E-value=0.023 Score=46.95 Aligned_cols=17 Identities=29% Similarity=0.247 Sum_probs=15.5
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 33 ~~~llGpsGsGKSTLLr 49 (362)
T TIGR03258 33 LLALIGKSGCGKTTLLR 49 (362)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 78899999999999974
No 298
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=93.18 E-value=0.023 Score=46.58 Aligned_cols=17 Identities=35% Similarity=0.300 Sum_probs=15.5
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 30 ~~~llGpsGsGKSTLLr 46 (353)
T PRK10851 30 MVALLGPSGSGKTTLLR 46 (353)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 78899999999999974
No 299
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=93.14 E-value=0.023 Score=49.34 Aligned_cols=17 Identities=29% Similarity=0.253 Sum_probs=15.2
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 347 ~~~l~G~NGsGKSTLlk 363 (635)
T PRK11147 347 KIALIGPNGCGKTTLLK 363 (635)
T ss_pred EEEEECCCCCcHHHHHH
Confidence 67899999999999974
No 300
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=93.12 E-value=0.024 Score=49.27 Aligned_cols=17 Identities=29% Similarity=0.319 Sum_probs=15.2
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 31 ~v~LvG~NGsGKSTLLr 47 (635)
T PRK11147 31 RVCLVGRNGAGKSTLMK 47 (635)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 57899999999999974
No 301
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.03 E-value=0.025 Score=44.72 Aligned_cols=17 Identities=35% Similarity=0.378 Sum_probs=15.3
Q ss_pred ceEEEecccCCCccCCC
Q 033696 96 PATIITGFLGSGKNTGS 112 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLL 112 (113)
-.+.|.|..|||||||+
T Consensus 31 e~~~i~G~nGsGKSTL~ 47 (235)
T COG1122 31 ERVLLIGPNGSGKSTLL 47 (235)
T ss_pred CEEEEECCCCCCHHHHH
Confidence 37889999999999996
No 302
>PRK06696 uridine kinase; Validated
Probab=92.99 E-value=0.042 Score=41.33 Aligned_cols=19 Identities=37% Similarity=0.343 Sum_probs=16.8
Q ss_pred CCCceEEEecccCCCccCC
Q 033696 93 NRIPATIITGFLGSGKNTG 111 (113)
Q Consensus 93 ~riPvTIiTGfLGsGKtTL 111 (113)
.+..++.|.|..|||||||
T Consensus 20 ~~~~iI~I~G~sgsGKSTl 38 (223)
T PRK06696 20 TRPLRVAIDGITASGKTTF 38 (223)
T ss_pred CCceEEEEECCCCCCHHHH
Confidence 4567999999999999997
No 303
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=92.94 E-value=0.026 Score=47.44 Aligned_cols=17 Identities=29% Similarity=0.311 Sum_probs=15.4
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
..++.|+.|+||||||+
T Consensus 31 f~vllGPSGcGKSTlLr 47 (338)
T COG3839 31 FVVLLGPSGCGKSTLLR 47 (338)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 57899999999999985
No 304
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=92.92 E-value=0.032 Score=49.27 Aligned_cols=17 Identities=41% Similarity=0.450 Sum_probs=15.6
Q ss_pred ceEEEecccCCCccCCC
Q 033696 96 PATIITGFLGSGKNTGS 112 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLL 112 (113)
.+|+|+|..||||||+|
T Consensus 24 ~~~~i~G~NGsGKS~il 40 (1164)
T TIGR02169 24 GFTVISGPNGSGKSNIG 40 (1164)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 48999999999999985
No 305
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=92.89 E-value=0.027 Score=49.22 Aligned_cols=17 Identities=35% Similarity=0.276 Sum_probs=15.2
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++-|.|..||||||||+
T Consensus 29 ~v~LvG~NGsGKSTLLk 45 (638)
T PRK10636 29 KVGLVGKNGCGKSTLLA 45 (638)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 57899999999999974
No 306
>PRK00064 recF recombination protein F; Reviewed
Probab=92.84 E-value=0.032 Score=45.66 Aligned_cols=17 Identities=24% Similarity=0.309 Sum_probs=15.7
Q ss_pred ceEEEecccCCCccCCC
Q 033696 96 PATIITGFLGSGKNTGS 112 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLL 112 (113)
.+++|+|..|+||||||
T Consensus 24 ~~~~i~G~NgsGKT~ll 40 (361)
T PRK00064 24 GVNVLVGENGQGKTNLL 40 (361)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 39999999999999986
No 307
>PRK14079 recF recombination protein F; Provisional
Probab=92.83 E-value=0.032 Score=45.55 Aligned_cols=17 Identities=24% Similarity=0.176 Sum_probs=15.6
Q ss_pred ceEEEecccCCCccCCC
Q 033696 96 PATIITGFLGSGKNTGS 112 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLL 112 (113)
.++||+|..|+|||+||
T Consensus 24 g~nvi~G~NGsGKT~lL 40 (349)
T PRK14079 24 GVTAVVGENAAGKTNLL 40 (349)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 38999999999999986
No 308
>PRK09087 hypothetical protein; Validated
Probab=92.78 E-value=0.029 Score=43.26 Aligned_cols=19 Identities=32% Similarity=0.590 Sum_probs=16.9
Q ss_pred CceEEEecccCCCccCCCC
Q 033696 95 IPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 95 iPvTIiTGfLGsGKtTLLn 113 (113)
-|..+|.|.-|+|||+||+
T Consensus 44 ~~~l~l~G~~GsGKThLl~ 62 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLAS 62 (226)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 5888999999999999974
No 309
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=92.71 E-value=0.052 Score=48.32 Aligned_cols=17 Identities=47% Similarity=0.491 Sum_probs=15.5
Q ss_pred ceEEEecccCCCccCCC
Q 033696 96 PATIITGFLGSGKNTGS 112 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLL 112 (113)
-.||+||..||||||+|
T Consensus 274 ElTvlTGpTGsGKTTFl 290 (514)
T KOG2373|consen 274 ELTVLTGPTGSGKTTFL 290 (514)
T ss_pred ceEEEecCCCCCceeEe
Confidence 46999999999999986
No 310
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=92.66 E-value=0.036 Score=42.51 Aligned_cols=20 Identities=30% Similarity=0.556 Sum_probs=17.6
Q ss_pred CCCceEEEecccCCCccCCC
Q 033696 93 NRIPATIITGFLGSGKNTGS 112 (113)
Q Consensus 93 ~riPvTIiTGfLGsGKtTLL 112 (113)
.++|..+++|..|+|||||+
T Consensus 34 ~~~~~lll~Gp~GtGKT~la 53 (337)
T PRK12402 34 PNLPHLLVQGPPGSGKTAAV 53 (337)
T ss_pred CCCceEEEECCCCCCHHHHH
Confidence 46788999999999999974
No 311
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=92.64 E-value=0.03 Score=46.60 Aligned_cols=17 Identities=41% Similarity=0.331 Sum_probs=14.8
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
.+.|.|..|||||||+|
T Consensus 363 ~vaIvG~SGsGKSTLl~ 379 (529)
T TIGR02868 363 RVAILGPSGSGKSTLLM 379 (529)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46789999999999974
No 312
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=92.62 E-value=0.031 Score=48.15 Aligned_cols=20 Identities=35% Similarity=0.335 Sum_probs=17.0
Q ss_pred CCceEEEecccCCCccCCCC
Q 033696 94 RIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 94 riPvTIiTGfLGsGKtTLLn 113 (113)
+-.+++|+|..||||||+|+
T Consensus 241 ~~GlilitGptGSGKTTtL~ 260 (486)
T TIGR02533 241 PHGIILVTGPTGSGKTTTLY 260 (486)
T ss_pred CCCEEEEEcCCCCCHHHHHH
Confidence 34689999999999999863
No 313
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=92.61 E-value=0.03 Score=46.43 Aligned_cols=17 Identities=29% Similarity=0.251 Sum_probs=15.6
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 47 ~~~llGpsGsGKSTLLr 63 (377)
T PRK11607 47 IFALLGASGCGKSTLLR 63 (377)
T ss_pred EEEEECCCCCcHHHHHH
Confidence 78899999999999974
No 314
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=92.57 E-value=0.029 Score=47.24 Aligned_cols=18 Identities=28% Similarity=0.200 Sum_probs=15.9
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
=++.|.|..||||||||+
T Consensus 30 eiv~liGpNGaGKSTLLk 47 (402)
T PRK09536 30 SLVGLVGPNGAGKTTLLR 47 (402)
T ss_pred CEEEEECCCCchHHHHHH
Confidence 478899999999999974
No 315
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.53 E-value=0.038 Score=52.16 Aligned_cols=18 Identities=44% Similarity=0.517 Sum_probs=16.7
Q ss_pred CceEEEecccCCCccCCC
Q 033696 95 IPATIITGFLGSGKNTGS 112 (113)
Q Consensus 95 iPvTIiTGfLGsGKtTLL 112 (113)
-|+++|.|..||||||+|
T Consensus 28 ~~~~~I~G~NGaGKTTil 45 (1311)
T TIGR00606 28 SPLTILVGPNGAGKTTII 45 (1311)
T ss_pred cceEEEECCCCCCHHHHH
Confidence 489999999999999985
No 316
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=92.52 E-value=0.048 Score=44.72 Aligned_cols=20 Identities=30% Similarity=0.416 Sum_probs=18.2
Q ss_pred CCCceEEEecccCCCccCCC
Q 033696 93 NRIPATIITGFLGSGKNTGS 112 (113)
Q Consensus 93 ~riPvTIiTGfLGsGKtTLL 112 (113)
.++|+.-|+|+-|||||||+
T Consensus 203 ~~~~~~~~~g~~~~GKtt~~ 222 (366)
T PRK14489 203 GAPPLLGVVGYSGTGKTTLL 222 (366)
T ss_pred CCccEEEEecCCCCCHHHHH
Confidence 36899999999999999985
No 317
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=92.51 E-value=0.029 Score=48.11 Aligned_cols=17 Identities=41% Similarity=0.438 Sum_probs=15.2
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
=++|.|--|||||||||
T Consensus 175 NILisGGTGSGKTTlLN 191 (355)
T COG4962 175 NILISGGTGSGKTTLLN 191 (355)
T ss_pred eEEEeCCCCCCHHHHHH
Confidence 36889999999999987
No 318
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=92.40 E-value=0.034 Score=48.32 Aligned_cols=17 Identities=35% Similarity=0.425 Sum_probs=15.3
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 352 ~~~lvG~nGsGKSTLlk 368 (623)
T PRK10261 352 TLSLVGESGSGKSTTGR 368 (623)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 67899999999999974
No 319
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=92.37 E-value=0.034 Score=46.36 Aligned_cols=17 Identities=35% Similarity=0.397 Sum_probs=14.8
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
.+.|+|..||||||||+
T Consensus 360 ~v~IvG~sGsGKSTLl~ 376 (571)
T TIGR02203 360 TVALVGRSGSGKSTLVN 376 (571)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 56799999999999964
No 320
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=92.34 E-value=0.035 Score=46.13 Aligned_cols=20 Identities=35% Similarity=0.245 Sum_probs=17.1
Q ss_pred CCCceEEEecccCCCccCCC
Q 033696 93 NRIPATIITGFLGSGKNTGS 112 (113)
Q Consensus 93 ~riPvTIiTGfLGsGKtTLL 112 (113)
.+-.+.-|+|+.|||||||+
T Consensus 54 ~~~~~igi~G~~GaGKSTl~ 73 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFI 73 (332)
T ss_pred CCcEEEEEECCCCCCHHHHH
Confidence 45568889999999999985
No 321
>PRK03846 adenylylsulfate kinase; Provisional
Probab=92.32 E-value=0.049 Score=40.17 Aligned_cols=16 Identities=44% Similarity=0.559 Sum_probs=14.6
Q ss_pred eEEEecccCCCccCCC
Q 033696 97 ATIITGFLGSGKNTGS 112 (113)
Q Consensus 97 vTIiTGfLGsGKtTLL 112 (113)
++.|+|..|||||||.
T Consensus 26 ~i~i~G~~GsGKSTla 41 (198)
T PRK03846 26 VLWFTGLSGSGKSTVA 41 (198)
T ss_pred EEEEECCCCCCHHHHH
Confidence 8889999999999984
No 322
>PLN03073 ABC transporter F family; Provisional
Probab=92.32 E-value=0.035 Score=49.96 Aligned_cols=17 Identities=29% Similarity=0.223 Sum_probs=15.2
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 537 ~i~LvG~NGsGKSTLLk 553 (718)
T PLN03073 537 RIAMVGPNGIGKSTILK 553 (718)
T ss_pred EEEEECCCCCcHHHHHH
Confidence 67899999999999974
No 323
>PRK06620 hypothetical protein; Validated
Probab=92.24 E-value=0.036 Score=42.38 Aligned_cols=18 Identities=28% Similarity=0.202 Sum_probs=15.9
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
+..++.|.-|+|||+|++
T Consensus 45 ~~l~l~Gp~G~GKThLl~ 62 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTK 62 (214)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 568999999999999974
No 324
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=92.23 E-value=0.035 Score=48.22 Aligned_cols=17 Identities=35% Similarity=0.421 Sum_probs=15.4
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++-|.|..||||||||+
T Consensus 44 ~~~lvG~nGsGKSTLl~ 60 (623)
T PRK10261 44 TLAIVGESGSGKSVTAL 60 (623)
T ss_pred EEEEECCCCChHHHHHH
Confidence 68899999999999974
No 325
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=92.20 E-value=0.045 Score=49.87 Aligned_cols=19 Identities=26% Similarity=0.130 Sum_probs=16.8
Q ss_pred CceEEEecccCCCccCCCC
Q 033696 95 IPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 95 iPvTIiTGfLGsGKtTLLn 113 (113)
-.+.+|||..|+||||||+
T Consensus 322 ~~~liItGpNg~GKSTlLK 340 (771)
T TIGR01069 322 KRVLAITGPNTGGKTVTLK 340 (771)
T ss_pred ceEEEEECCCCCCchHHHH
Confidence 3589999999999999974
No 326
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=92.16 E-value=0.037 Score=44.44 Aligned_cols=17 Identities=29% Similarity=0.243 Sum_probs=15.1
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..|||||||++
T Consensus 35 ~~~ivG~sGsGKSTLl~ 51 (330)
T PRK15093 35 IRGLVGESGSGKSLIAK 51 (330)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 67899999999999964
No 327
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=92.08 E-value=0.032 Score=42.34 Aligned_cols=18 Identities=22% Similarity=0.359 Sum_probs=17.0
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
.++++.|..|+||+||+|
T Consensus 36 k~~vl~G~SGvGKSSLiN 53 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLIN 53 (161)
T ss_dssp SEEEEECSTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 699999999999999986
No 328
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.08 E-value=0.047 Score=45.14 Aligned_cols=16 Identities=31% Similarity=0.389 Sum_probs=15.2
Q ss_pred eEEEecccCCCccCCC
Q 033696 97 ATIITGFLGSGKNTGS 112 (113)
Q Consensus 97 vTIiTGfLGsGKtTLL 112 (113)
+++|+|..|+|||+||
T Consensus 25 ~nvi~G~NGsGKT~lL 40 (365)
T TIGR00611 25 VNVIVGPNGQGKTNLL 40 (365)
T ss_pred eEEEECCCCCCHHHHH
Confidence 8999999999999986
No 329
>PRK01156 chromosome segregation protein; Provisional
Probab=92.00 E-value=0.048 Score=48.64 Aligned_cols=17 Identities=41% Similarity=0.458 Sum_probs=15.9
Q ss_pred ceEEEecccCCCccCCC
Q 033696 96 PATIITGFLGSGKNTGS 112 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLL 112 (113)
.+++|+|..||||||+|
T Consensus 24 gi~~I~G~NGsGKSsil 40 (895)
T PRK01156 24 GINIITGKNGAGKSSIV 40 (895)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 69999999999999986
No 330
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=91.99 E-value=0.04 Score=45.85 Aligned_cols=18 Identities=28% Similarity=0.292 Sum_probs=15.5
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-.+.|+|..|||||||+|
T Consensus 349 ~~~~ivG~sGsGKSTL~~ 366 (529)
T TIGR02857 349 ERVALVGPSGAGKSTLLN 366 (529)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 367899999999999964
No 331
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=91.98 E-value=0.04 Score=46.27 Aligned_cols=17 Identities=29% Similarity=0.479 Sum_probs=15.5
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 52 i~~I~G~nGsGKSTLlr 68 (382)
T TIGR03415 52 ICVLMGLSGSGKSSLLR 68 (382)
T ss_pred EEEEECCCCCcHHHHHH
Confidence 78999999999999974
No 332
>PRK13409 putative ATPase RIL; Provisional
Probab=91.97 E-value=0.041 Score=48.16 Aligned_cols=17 Identities=35% Similarity=0.235 Sum_probs=15.4
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..|+||||||+
T Consensus 367 iv~l~G~NGsGKSTLlk 383 (590)
T PRK13409 367 VIGIVGPNGIGKTTFAK 383 (590)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 78899999999999974
No 333
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=91.96 E-value=0.041 Score=38.70 Aligned_cols=18 Identities=17% Similarity=0.342 Sum_probs=15.4
Q ss_pred ceEE-EecccCCCccCCCC
Q 033696 96 PATI-ITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTI-iTGfLGsGKtTLLn 113 (113)
+++| +.|..|+||+||+|
T Consensus 102 ~~~v~~~G~~nvGKStliN 120 (157)
T cd01858 102 QISVGFIGYPNVGKSSIIN 120 (157)
T ss_pred ceEEEEEeCCCCChHHHHH
Confidence 4565 89999999999987
No 334
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=91.86 E-value=0.055 Score=50.26 Aligned_cols=22 Identities=36% Similarity=0.244 Sum_probs=18.9
Q ss_pred CCCCCceEEEecccCCCccCCC
Q 033696 91 PDNRIPATIITGFLGSGKNTGS 112 (113)
Q Consensus 91 ~~~riPvTIiTGfLGsGKtTLL 112 (113)
+...-++++|+|..||||||+|
T Consensus 26 ~l~~~~l~~I~G~tGaGKStil 47 (1047)
T PRK10246 26 PFASNGLFAITGPTGAGKTTLL 47 (1047)
T ss_pred cCCCCCEEEEECCCCCCHHHHH
Confidence 3455689999999999999986
No 335
>PLN02165 adenylate isopentenyltransferase
Probab=91.82 E-value=0.097 Score=44.10 Aligned_cols=21 Identities=29% Similarity=0.366 Sum_probs=17.2
Q ss_pred CCCCCceEEEecccCCCccCC
Q 033696 91 PDNRIPATIITGFLGSGKNTG 111 (113)
Q Consensus 91 ~~~riPvTIiTGfLGsGKtTL 111 (113)
...+-++++|.|..|||||||
T Consensus 39 ~~~~g~iivIiGPTGSGKStL 59 (334)
T PLN02165 39 QNCKDKVVVIMGATGSGKSRL 59 (334)
T ss_pred cCCCCCEEEEECCCCCcHHHH
Confidence 334455899999999999998
No 336
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=91.77 E-value=0.044 Score=46.44 Aligned_cols=17 Identities=35% Similarity=0.388 Sum_probs=15.0
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
.+.|+|..|||||||++
T Consensus 363 ~v~IvG~sGsGKSTLl~ 379 (588)
T PRK13657 363 TVAIVGPTGAGKSTLIN 379 (588)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999999964
No 337
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=91.76 E-value=0.061 Score=46.33 Aligned_cols=21 Identities=29% Similarity=0.173 Sum_probs=18.4
Q ss_pred CCCceEEEecccCCCccCCCC
Q 033696 93 NRIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 93 ~riPvTIiTGfLGsGKtTLLn 113 (113)
...-||-|+|..|||||||+|
T Consensus 22 p~~GvTAlFG~SGsGKTslin 42 (352)
T COG4148 22 PARGITALFGPSGSGKTSLIN 42 (352)
T ss_pred CCCceEEEecCCCCChhhHHH
Confidence 445789999999999999987
No 338
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.75 E-value=0.053 Score=48.25 Aligned_cols=20 Identities=35% Similarity=0.375 Sum_probs=17.3
Q ss_pred CCCceEEEecccCCCccCCC
Q 033696 93 NRIPATIITGFLGSGKNTGS 112 (113)
Q Consensus 93 ~riPvTIiTGfLGsGKtTLL 112 (113)
+.=.+.++||+-||||||.|
T Consensus 256 ~p~GliLvTGPTGSGKTTTL 275 (500)
T COG2804 256 RPQGLILVTGPTGSGKTTTL 275 (500)
T ss_pred CCCeEEEEeCCCCCCHHHHH
Confidence 45678999999999999975
No 339
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=91.75 E-value=0.044 Score=45.49 Aligned_cols=17 Identities=29% Similarity=0.337 Sum_probs=15.3
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
..++-|..|+|||||||
T Consensus 33 ~vv~lGpSGcGKTTLLn 49 (259)
T COG4525 33 LVVVLGPSGCGKTTLLN 49 (259)
T ss_pred EEEEEcCCCccHHHHHH
Confidence 46788999999999997
No 340
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=91.74 E-value=0.041 Score=46.20 Aligned_cols=17 Identities=35% Similarity=0.436 Sum_probs=14.8
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
.+.|+|..|||||||++
T Consensus 371 ~~aIvG~sGsGKSTLl~ 387 (582)
T PRK11176 371 TVALVGRSGSGKSTIAN 387 (582)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46899999999999964
No 341
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=91.69 E-value=0.046 Score=46.50 Aligned_cols=17 Identities=41% Similarity=0.298 Sum_probs=15.0
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
.+.|+|..||||||||+
T Consensus 343 ~~~ivG~sGsGKSTLl~ 359 (569)
T PRK10789 343 MLGICGPTGSGKSTLLS 359 (569)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 57899999999999974
No 342
>PRK11058 GTPase HflX; Provisional
Probab=91.66 E-value=0.056 Score=45.82 Aligned_cols=22 Identities=23% Similarity=0.453 Sum_probs=19.5
Q ss_pred CCCCceEEEecccCCCccCCCC
Q 033696 92 DNRIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 92 ~~riPvTIiTGfLGsGKtTLLn 113 (113)
...+|.++|.|+.++|||||+|
T Consensus 194 ~~~~p~ValVG~~NaGKSSLlN 215 (426)
T PRK11058 194 KADVPTVSLVGYTNAGKSTLFN 215 (426)
T ss_pred hcCCCEEEEECCCCCCHHHHHH
Confidence 3467999999999999999986
No 343
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=91.65 E-value=0.044 Score=44.16 Aligned_cols=18 Identities=39% Similarity=0.383 Sum_probs=15.5
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
=++-|.|..|||||||++
T Consensus 34 e~~~lvG~sGsGKSTL~~ 51 (326)
T PRK11022 34 EVVGIVGESGSGKSVSSL 51 (326)
T ss_pred CEEEEECCCCChHHHHHH
Confidence 378899999999999963
No 344
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=91.62 E-value=0.048 Score=44.61 Aligned_cols=18 Identities=28% Similarity=0.250 Sum_probs=15.7
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
=|+-+-|.+|+||||||+
T Consensus 30 eiv~llG~NGaGKTTlLk 47 (237)
T COG0410 30 EIVALLGRNGAGKTTLLK 47 (237)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 478889999999999974
No 345
>PLN03211 ABC transporter G-25; Provisional
Probab=91.58 E-value=0.049 Score=48.31 Aligned_cols=17 Identities=35% Similarity=0.292 Sum_probs=15.6
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..|||||||||
T Consensus 96 ~~aI~GpnGaGKSTLL~ 112 (659)
T PLN03211 96 ILAVLGPSGSGKSTLLN 112 (659)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 78899999999999975
No 346
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=91.54 E-value=0.05 Score=47.26 Aligned_cols=17 Identities=29% Similarity=0.302 Sum_probs=15.6
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..|||||||||
T Consensus 53 ~~aI~G~sGsGKSTLL~ 69 (617)
T TIGR00955 53 LLAVMGSSGAGKTTLMN 69 (617)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 78899999999999975
No 347
>PRK13409 putative ATPase RIL; Provisional
Probab=91.53 E-value=0.049 Score=47.71 Aligned_cols=17 Identities=41% Similarity=0.341 Sum_probs=15.4
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++-|.|..|+||||||+
T Consensus 101 v~gLvG~NGaGKSTLlk 117 (590)
T PRK13409 101 VTGILGPNGIGKTTAVK 117 (590)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 78899999999999974
No 348
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=91.52 E-value=0.057 Score=40.99 Aligned_cols=20 Identities=30% Similarity=0.609 Sum_probs=17.1
Q ss_pred CCCceEEEecccCCCccCCC
Q 033696 93 NRIPATIITGFLGSGKNTGS 112 (113)
Q Consensus 93 ~riPvTIiTGfLGsGKtTLL 112 (113)
..+|..+++|.-|+||||++
T Consensus 36 ~~~~~~ll~G~~G~GKt~~~ 55 (319)
T PRK00440 36 KNMPHLLFAGPPGTGKTTAA 55 (319)
T ss_pred CCCCeEEEECCCCCCHHHHH
Confidence 45677899999999999975
No 349
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=91.51 E-value=0.059 Score=41.42 Aligned_cols=20 Identities=25% Similarity=0.310 Sum_probs=16.8
Q ss_pred CCCceEEEecccCCCccCCC
Q 033696 93 NRIPATIITGFLGSGKNTGS 112 (113)
Q Consensus 93 ~riPvTIiTGfLGsGKtTLL 112 (113)
.+.+..+++|..|.|||+|+
T Consensus 28 ~~~~~~ll~Gp~G~GKT~la 47 (305)
T TIGR00635 28 EALDHLLLYGPPGLGKTTLA 47 (305)
T ss_pred CCCCeEEEECCCCCCHHHHH
Confidence 34567899999999999985
No 350
>PRK03918 chromosome segregation protein; Provisional
Probab=91.43 E-value=0.058 Score=47.40 Aligned_cols=17 Identities=35% Similarity=0.388 Sum_probs=15.7
Q ss_pred ceEEEecccCCCccCCC
Q 033696 96 PATIITGFLGSGKNTGS 112 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLL 112 (113)
++++|+|..|+||||+|
T Consensus 24 g~~~i~G~nG~GKStil 40 (880)
T PRK03918 24 GINLIIGQNGSGKSSIL 40 (880)
T ss_pred CcEEEEcCCCCCHHHHH
Confidence 57999999999999985
No 351
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=91.41 E-value=0.051 Score=43.04 Aligned_cols=18 Identities=33% Similarity=0.278 Sum_probs=15.8
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|.|..||||||||+
T Consensus 31 e~~~IvG~nGsGKSTLl~ 48 (275)
T cd03289 31 QRVGLLGRTGSGKSTLLS 48 (275)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 478899999999999974
No 352
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=91.36 E-value=0.055 Score=42.11 Aligned_cols=18 Identities=44% Similarity=0.202 Sum_probs=16.6
Q ss_pred CceEEEecccCCCccCCC
Q 033696 95 IPATIITGFLGSGKNTGS 112 (113)
Q Consensus 95 iPvTIiTGfLGsGKtTLL 112 (113)
..+.||||...+||||+|
T Consensus 43 ~~~~iiTGpN~sGKSt~l 60 (235)
T PF00488_consen 43 SRIIIITGPNMSGKSTFL 60 (235)
T ss_dssp SSEEEEESSTTSSHHHHH
T ss_pred eeEEEEeCCCccchhhHH
Confidence 479999999999999986
No 353
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=91.33 E-value=0.053 Score=38.52 Aligned_cols=16 Identities=50% Similarity=0.574 Sum_probs=14.9
Q ss_pred eEEEecccCCCccCCC
Q 033696 97 ATIITGFLGSGKNTGS 112 (113)
Q Consensus 97 vTIiTGfLGsGKtTLL 112 (113)
+++|+|.-|+|||||+
T Consensus 34 l~~i~g~~g~GKT~~~ 49 (193)
T PF13481_consen 34 LTLIAGPPGSGKTTLA 49 (193)
T ss_dssp EEEEEECSTSSHHHHH
T ss_pred EEEEEeCCCCCHHHHH
Confidence 8999999999999974
No 354
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=91.24 E-value=0.054 Score=43.97 Aligned_cols=18 Identities=28% Similarity=0.246 Sum_probs=15.6
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
=++.|.|..|||||||++
T Consensus 48 e~~~lvG~sGsGKSTLlk 65 (331)
T PRK15079 48 ETLGVVGESGCGKSTFAR 65 (331)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 378899999999999963
No 355
>PRK08084 DNA replication initiation factor; Provisional
Probab=91.12 E-value=0.069 Score=40.87 Aligned_cols=18 Identities=11% Similarity=-0.036 Sum_probs=16.0
Q ss_pred CceEEEecccCCCccCCC
Q 033696 95 IPATIITGFLGSGKNTGS 112 (113)
Q Consensus 95 iPvTIiTGfLGsGKtTLL 112 (113)
.+..+++|.-|+|||+|+
T Consensus 45 ~~~l~l~Gp~G~GKThLl 62 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLL 62 (235)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 367899999999999986
No 356
>PRK06893 DNA replication initiation factor; Validated
Probab=91.08 E-value=0.06 Score=40.97 Aligned_cols=19 Identities=32% Similarity=0.148 Sum_probs=17.0
Q ss_pred CCceEEEecccCCCccCCC
Q 033696 94 RIPATIITGFLGSGKNTGS 112 (113)
Q Consensus 94 riPvTIiTGfLGsGKtTLL 112 (113)
.-|..++.|..|+|||.|+
T Consensus 38 ~~~~l~l~G~~G~GKThL~ 56 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLL 56 (229)
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3588999999999999986
No 357
>PRK10436 hypothetical protein; Provisional
Probab=91.05 E-value=0.072 Score=46.00 Aligned_cols=19 Identities=32% Similarity=0.345 Sum_probs=16.7
Q ss_pred CCceEEEecccCCCccCCC
Q 033696 94 RIPATIITGFLGSGKNTGS 112 (113)
Q Consensus 94 riPvTIiTGfLGsGKtTLL 112 (113)
+--+++|||.-||||||+|
T Consensus 217 ~~GliLvtGpTGSGKTTtL 235 (462)
T PRK10436 217 PQGLILVTGPTGSGKTVTL 235 (462)
T ss_pred cCCeEEEECCCCCChHHHH
Confidence 4568999999999999976
No 358
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=91.02 E-value=0.07 Score=47.56 Aligned_cols=18 Identities=28% Similarity=0.305 Sum_probs=16.2
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
=++.|.|..||||||||+
T Consensus 33 Eiv~L~G~SGsGKSTLLr 50 (504)
T TIGR03238 33 SLLFLCGSSGDGKSEILA 50 (504)
T ss_pred CEEEEECCCCCCHHHHHh
Confidence 478999999999999985
No 359
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=91.01 E-value=0.07 Score=46.03 Aligned_cols=17 Identities=35% Similarity=0.413 Sum_probs=15.6
Q ss_pred ceEEEecccCCCccCCC
Q 033696 96 PATIITGFLGSGKNTGS 112 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLL 112 (113)
.+++|||..|||||+||
T Consensus 23 g~~vitG~nGaGKS~ll 39 (563)
T TIGR00634 23 GLTVLTGETGAGKSMII 39 (563)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 58999999999999986
No 360
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=90.99 E-value=0.063 Score=44.02 Aligned_cols=17 Identities=35% Similarity=0.313 Sum_probs=15.4
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++-|-|..||||+||||
T Consensus 27 ~vAi~GpSGaGKSTLLn 43 (231)
T COG3840 27 IVAILGPSGAGKSTLLN 43 (231)
T ss_pred EEEEECCCCccHHHHHH
Confidence 67788999999999987
No 361
>PF13175 AAA_15: AAA ATPase domain
Probab=90.96 E-value=0.06 Score=41.88 Aligned_cols=18 Identities=39% Similarity=0.278 Sum_probs=16.4
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
.+|||.|-.|+||||+|+
T Consensus 23 ~itiiiG~N~sGKT~IL~ 40 (415)
T PF13175_consen 23 DITIIIGENNSGKTNILE 40 (415)
T ss_pred ceEEEEccCCCCHHHHHH
Confidence 789999999999999873
No 362
>PRK00098 GTPase RsgA; Reviewed
Probab=90.95 E-value=0.059 Score=42.94 Aligned_cols=17 Identities=35% Similarity=0.452 Sum_probs=15.7
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++++.|..|+|||||+|
T Consensus 166 ~~~~~G~sgvGKStlin 182 (298)
T PRK00098 166 VTVLAGQSGVGKSTLLN 182 (298)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 78899999999999986
No 363
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=90.94 E-value=0.083 Score=41.19 Aligned_cols=15 Identities=33% Similarity=0.341 Sum_probs=14.4
Q ss_pred eEEEecccCCCccCC
Q 033696 97 ATIITGFLGSGKNTG 111 (113)
Q Consensus 97 vTIiTGfLGsGKtTL 111 (113)
+|+|+|..|+|||+|
T Consensus 38 ~~lI~G~pGtGKT~l 52 (259)
T TIGR03878 38 VINITGVSDTGKSLM 52 (259)
T ss_pred EEEEEcCCCCCHHHH
Confidence 899999999999997
No 364
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=90.92 E-value=0.061 Score=45.40 Aligned_cols=17 Identities=24% Similarity=0.280 Sum_probs=14.8
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
.+-|+|..|||||||++
T Consensus 378 ~vaIvG~SGsGKSTL~~ 394 (588)
T PRK11174 378 RIALVGPSGAGKTSLLN 394 (588)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46799999999999964
No 365
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=90.91 E-value=0.061 Score=45.44 Aligned_cols=17 Identities=35% Similarity=0.337 Sum_probs=15.1
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
.+.|.|..|||||||++
T Consensus 351 ~~aivG~sGsGKSTL~~ 367 (547)
T PRK10522 351 LLFLIGGNGSGKSTLAM 367 (547)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 57899999999999964
No 366
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=90.85 E-value=0.061 Score=43.47 Aligned_cols=17 Identities=29% Similarity=0.358 Sum_probs=15.3
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++-|.|..|||||||++
T Consensus 43 ~~~IvG~sGsGKSTLl~ 59 (327)
T PRK11308 43 TLAVVGESGCGKSTLAR 59 (327)
T ss_pred EEEEECCCCCcHHHHHH
Confidence 78899999999999963
No 367
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=90.82 E-value=0.062 Score=43.97 Aligned_cols=17 Identities=35% Similarity=0.258 Sum_probs=15.1
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++-|-|..|+|||||||
T Consensus 31 fvsilGpSGcGKSTLLr 47 (248)
T COG1116 31 FVAILGPSGCGKSTLLR 47 (248)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 56788999999999986
No 368
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=90.81 E-value=0.076 Score=46.30 Aligned_cols=19 Identities=32% Similarity=0.391 Sum_probs=16.7
Q ss_pred CCceEEEecccCCCccCCC
Q 033696 94 RIPATIITGFLGSGKNTGS 112 (113)
Q Consensus 94 riPvTIiTGfLGsGKtTLL 112 (113)
+--+++|||.-||||||+|
T Consensus 315 ~~Glilv~G~tGSGKTTtl 333 (564)
T TIGR02538 315 PQGMVLVTGPTGSGKTVSL 333 (564)
T ss_pred cCCeEEEECCCCCCHHHHH
Confidence 3468999999999999986
No 369
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.69 E-value=0.066 Score=43.42 Aligned_cols=17 Identities=35% Similarity=0.294 Sum_probs=15.1
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 110 ~v~IvG~~GsGKSTLl~ 126 (329)
T PRK14257 110 VTAFIGPSGCGKSTFLR 126 (329)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 57899999999999973
No 370
>PRK04841 transcriptional regulator MalT; Provisional
Probab=90.65 E-value=0.086 Score=45.66 Aligned_cols=20 Identities=30% Similarity=0.275 Sum_probs=18.4
Q ss_pred CCCceEEEecccCCCccCCC
Q 033696 93 NRIPATIITGFLGSGKNTGS 112 (113)
Q Consensus 93 ~riPvTIiTGfLGsGKtTLL 112 (113)
...|+|+|+|.-|.|||||+
T Consensus 30 ~~~~~~~v~apaG~GKTtl~ 49 (903)
T PRK04841 30 NNYRLVLVTSPAGYGKTTLI 49 (903)
T ss_pred cCCCeEEEECCCCCCHHHHH
Confidence 46899999999999999986
No 371
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=90.59 E-value=0.068 Score=45.45 Aligned_cols=18 Identities=33% Similarity=0.361 Sum_probs=15.7
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-.+.|.|..|||||||+|
T Consensus 369 ~~~aivG~sGsGKSTl~~ 386 (555)
T TIGR01194 369 DIVFIVGENGCGKSTLAK 386 (555)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 468899999999999964
No 372
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=90.54 E-value=0.069 Score=44.73 Aligned_cols=17 Identities=29% Similarity=0.331 Sum_probs=14.7
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
.+.|.|..|||||||++
T Consensus 368 ~i~IvG~sGsGKSTLlk 384 (576)
T TIGR02204 368 TVALVGPSGAGKSTLFQ 384 (576)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46789999999999964
No 373
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=90.52 E-value=0.098 Score=39.98 Aligned_cols=16 Identities=38% Similarity=0.478 Sum_probs=14.7
Q ss_pred ceEEEecccCCCccCC
Q 033696 96 PATIITGFLGSGKNTG 111 (113)
Q Consensus 96 PvTIiTGfLGsGKtTL 111 (113)
=+++|+|..|+|||+|
T Consensus 24 ~~~lI~G~pGsGKT~f 39 (260)
T COG0467 24 SVVLITGPPGTGKTIF 39 (260)
T ss_pred cEEEEEcCCCCcHHHH
Confidence 4799999999999997
No 374
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=90.51 E-value=0.069 Score=47.15 Aligned_cols=18 Identities=39% Similarity=0.281 Sum_probs=16.3
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
=++.|-|.-|||||||||
T Consensus 57 el~AimG~SGsGKtTLL~ 74 (613)
T KOG0061|consen 57 ELLAIMGPSGSGKTTLLN 74 (613)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 388999999999999986
No 375
>PRK13764 ATPase; Provisional
Probab=90.47 E-value=0.066 Score=48.10 Aligned_cols=17 Identities=35% Similarity=0.509 Sum_probs=15.0
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
-++|+|..||||||||+
T Consensus 259 ~ILIsG~TGSGKTTll~ 275 (602)
T PRK13764 259 GILIAGAPGAGKSTFAQ 275 (602)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37999999999999974
No 376
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=90.45 E-value=0.071 Score=45.73 Aligned_cols=18 Identities=33% Similarity=0.355 Sum_probs=15.3
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
=.+.|+|..|||||||++
T Consensus 362 ~~~~ivG~sGsGKSTL~~ 379 (585)
T TIGR01192 362 QTVAIVGPTGAGKTTLIN 379 (585)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 357899999999999964
No 377
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=90.40 E-value=0.09 Score=43.26 Aligned_cols=22 Identities=23% Similarity=0.456 Sum_probs=19.6
Q ss_pred CCCCceEEEecccCCCccCCCC
Q 033696 92 DNRIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 92 ~~riPvTIiTGfLGsGKtTLLn 113 (113)
...+|.++|.|+.++|||||||
T Consensus 186 ~~~~~~ValvG~~NvGKSSLln 207 (351)
T TIGR03156 186 RADVPTVALVGYTNAGKSTLFN 207 (351)
T ss_pred ccCCcEEEEECCCCCCHHHHHH
Confidence 3568999999999999999986
No 378
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=90.40 E-value=0.073 Score=45.04 Aligned_cols=18 Identities=28% Similarity=0.209 Sum_probs=15.4
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++-+-|+.||||||||+
T Consensus 32 ef~~lLGPSGcGKTTlLR 49 (352)
T COG3842 32 EFVTLLGPSGCGKTTLLR 49 (352)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 467788999999999973
No 379
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=90.38 E-value=0.073 Score=44.84 Aligned_cols=17 Identities=47% Similarity=0.442 Sum_probs=15.2
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
.+.|.|..|||||||++
T Consensus 346 ~~~ivG~sGsGKSTL~~ 362 (544)
T TIGR01842 346 ALAIIGPSGSGKSTLAR 362 (544)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 67899999999999964
No 380
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=90.33 E-value=0.067 Score=43.31 Aligned_cols=18 Identities=33% Similarity=0.300 Sum_probs=15.6
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++-|.|..|||||||++
T Consensus 43 e~~~ivG~sGsGKSTL~~ 60 (330)
T PRK09473 43 ETLGIVGESGSGKSQTAF 60 (330)
T ss_pred CEEEEECCCCchHHHHHH
Confidence 378899999999999963
No 381
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=90.24 E-value=0.092 Score=41.63 Aligned_cols=17 Identities=29% Similarity=0.327 Sum_probs=15.1
Q ss_pred ceEEEecccCCCccCCC
Q 033696 96 PATIITGFLGSGKNTGS 112 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLL 112 (113)
-++.+.|..|+||||++
T Consensus 195 ~vi~~vGptGvGKTTt~ 211 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTL 211 (282)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 48889999999999974
No 382
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=90.16 E-value=0.082 Score=44.00 Aligned_cols=18 Identities=33% Similarity=0.261 Sum_probs=15.5
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-|.-|-|.+|+||||||+
T Consensus 28 ev~ailGPNGAGKSTlLk 45 (259)
T COG4559 28 EVLAILGPNGAGKSTLLK 45 (259)
T ss_pred cEEEEECCCCccHHHHHH
Confidence 377889999999999973
No 383
>PRK05439 pantothenate kinase; Provisional
Probab=90.12 E-value=0.14 Score=42.38 Aligned_cols=20 Identities=35% Similarity=0.619 Sum_probs=15.8
Q ss_pred CCCCceEE-EecccCCCccCC
Q 033696 92 DNRIPATI-ITGFLGSGKNTG 111 (113)
Q Consensus 92 ~~riPvTI-iTGfLGsGKtTL 111 (113)
..+.|.+| |+|..|||||||
T Consensus 82 ~~~~~~iIgIaG~~gsGKSTl 102 (311)
T PRK05439 82 GQKVPFIIGIAGSVAVGKSTT 102 (311)
T ss_pred CCCCCEEEEEECCCCCCHHHH
Confidence 34556554 999999999998
No 384
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=90.12 E-value=0.079 Score=45.24 Aligned_cols=17 Identities=29% Similarity=0.307 Sum_probs=15.1
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
.+.|.|..|||||||++
T Consensus 368 ~~aivG~sGsGKSTL~~ 384 (574)
T PRK11160 368 KVALLGRTGCGKSTLLQ 384 (574)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 67899999999999964
No 385
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=90.10 E-value=0.082 Score=41.13 Aligned_cols=20 Identities=30% Similarity=0.084 Sum_probs=17.1
Q ss_pred CCceEEEecccCCCccCCCC
Q 033696 94 RIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 94 riPvTIiTGfLGsGKtTLLn 113 (113)
+-.+++|+|..|+||||||+
T Consensus 30 ~g~~~~itG~N~~GKStll~ 49 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIR 49 (222)
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 44688999999999999863
No 386
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=90.08 E-value=0.08 Score=45.93 Aligned_cols=17 Identities=35% Similarity=0.372 Sum_probs=14.5
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
.+.|.|..|||||||++
T Consensus 507 ~vaIvG~sGsGKSTLlk 523 (710)
T TIGR03796 507 RVALVGGSGSGKSTIAK 523 (710)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 45689999999999964
No 387
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=90.02 E-value=0.082 Score=45.80 Aligned_cols=17 Identities=41% Similarity=0.325 Sum_probs=14.5
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
.+-|+|..|||||||++
T Consensus 481 ~vaIvG~sGsGKSTLlk 497 (686)
T TIGR03797 481 FVAIVGPSGSGKSTLLR 497 (686)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 35689999999999964
No 388
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=90.02 E-value=0.11 Score=40.74 Aligned_cols=17 Identities=35% Similarity=0.346 Sum_probs=15.5
Q ss_pred CceEEEecccCCCccCC
Q 033696 95 IPATIITGFLGSGKNTG 111 (113)
Q Consensus 95 iPvTIiTGfLGsGKtTL 111 (113)
--||.|+|..|+|||+|
T Consensus 95 g~i~ei~G~~g~GKT~l 111 (310)
T TIGR02236 95 QAITEVFGEFGSGKTQI 111 (310)
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45899999999999998
No 389
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=89.98 E-value=0.082 Score=46.49 Aligned_cols=17 Identities=41% Similarity=0.491 Sum_probs=15.0
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
.+.|.|..|||||||+|
T Consensus 509 ~vaIvG~SGsGKSTLl~ 525 (711)
T TIGR00958 509 VVALVGPSGSGKSTVAA 525 (711)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 57899999999999964
No 390
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=89.83 E-value=0.12 Score=38.21 Aligned_cols=16 Identities=44% Similarity=0.368 Sum_probs=14.8
Q ss_pred eEEEecccCCCccCCC
Q 033696 97 ATIITGFLGSGKNTGS 112 (113)
Q Consensus 97 vTIiTGfLGsGKtTLL 112 (113)
+|.|+|..|+|||+|.
T Consensus 25 i~~i~G~~GsGKT~l~ 40 (225)
T PRK09361 25 ITQIYGPPGSGKTNIC 40 (225)
T ss_pred EEEEECCCCCCHHHHH
Confidence 8999999999999973
No 391
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=89.82 E-value=0.086 Score=45.71 Aligned_cols=17 Identities=41% Similarity=0.462 Sum_probs=14.6
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
.+.|+|..|||||||++
T Consensus 493 ~iaIvG~sGsGKSTLlk 509 (694)
T TIGR03375 493 KVAIIGRIGSGKSTLLK 509 (694)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46789999999999964
No 392
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=89.80 E-value=0.086 Score=47.22 Aligned_cols=18 Identities=44% Similarity=0.421 Sum_probs=15.9
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|.|..||||||||+
T Consensus 51 EivgIiGpNGSGKSTLLk 68 (549)
T PRK13545 51 EIVGIIGLNGSGKSTLSN 68 (549)
T ss_pred CEEEEEcCCCCCHHHHHH
Confidence 478899999999999974
No 393
>PLN03140 ABC transporter G family member; Provisional
Probab=89.80 E-value=0.09 Score=51.01 Aligned_cols=17 Identities=35% Similarity=0.282 Sum_probs=15.5
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 193 ~~~llGpnGSGKSTLLk 209 (1470)
T PLN03140 193 MTLLLGPPSSGKTTLLL 209 (1470)
T ss_pred EEEEEcCCCCCHHHHHH
Confidence 68899999999999985
No 394
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=89.80 E-value=0.12 Score=39.71 Aligned_cols=15 Identities=27% Similarity=0.264 Sum_probs=14.6
Q ss_pred eEEEecccCCCccCC
Q 033696 97 ATIITGFLGSGKNTG 111 (113)
Q Consensus 97 vTIiTGfLGsGKtTL 111 (113)
+++|+|..|+|||||
T Consensus 26 ~~~i~G~~G~GKTtl 40 (230)
T PRK08533 26 LILIEGDESTGKSIL 40 (230)
T ss_pred EEEEECCCCCCHHHH
Confidence 899999999999998
No 395
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=89.74 E-value=0.11 Score=41.24 Aligned_cols=21 Identities=33% Similarity=0.385 Sum_probs=17.0
Q ss_pred CCCceEEEecccCCCccCCCC
Q 033696 93 NRIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 93 ~riPvTIiTGfLGsGKtTLLn 113 (113)
.+-+..+|+|..|.|||++++
T Consensus 53 ~~~~~~lI~G~~GtGKT~l~~ 73 (394)
T PRK00411 53 SRPLNVLIYGPPGTGKTTTVK 73 (394)
T ss_pred CCCCeEEEECCCCCCHHHHHH
Confidence 344668999999999999863
No 396
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=89.68 E-value=0.088 Score=41.75 Aligned_cols=18 Identities=28% Similarity=0.401 Sum_probs=16.4
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++++.|..|+|||||+|
T Consensus 162 k~~~~~G~sg~GKSTlin 179 (287)
T cd01854 162 KTSVLVGQSGVGKSTLIN 179 (287)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 479999999999999976
No 397
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=89.66 E-value=0.09 Score=44.53 Aligned_cols=17 Identities=35% Similarity=0.485 Sum_probs=14.7
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
.+.|+|..|||||||++
T Consensus 369 ~iaIvG~SGsGKSTLl~ 385 (592)
T PRK10790 369 FVALVGHTGSGKSTLAS 385 (592)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 45789999999999964
No 398
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=89.58 E-value=0.092 Score=46.16 Aligned_cols=17 Identities=29% Similarity=0.298 Sum_probs=15.2
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..|||||||++
T Consensus 480 ~~~IvG~nGsGKSTLl~ 496 (659)
T TIGR00954 480 HLLICGPNGCGKSSLFR 496 (659)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 67899999999999964
No 399
>PTZ00202 tuzin; Provisional
Probab=89.54 E-value=0.12 Score=46.84 Aligned_cols=16 Identities=38% Similarity=0.663 Sum_probs=15.2
Q ss_pred eEEEecccCCCccCCC
Q 033696 97 ATIITGFLGSGKNTGS 112 (113)
Q Consensus 97 vTIiTGfLGsGKtTLL 112 (113)
|++|||..|+|||||+
T Consensus 288 ivvLtG~~G~GKTTLl 303 (550)
T PTZ00202 288 IVVFTGFRGCGKSSLC 303 (550)
T ss_pred EEEEECCCCCCHHHHH
Confidence 9999999999999995
No 400
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=89.49 E-value=0.099 Score=38.76 Aligned_cols=18 Identities=22% Similarity=0.060 Sum_probs=15.4
Q ss_pred CceEEEecccCCCccCCC
Q 033696 95 IPATIITGFLGSGKNTGS 112 (113)
Q Consensus 95 iPvTIiTGfLGsGKtTLL 112 (113)
-+..+++|.-|+|||+|+
T Consensus 42 ~~~~~l~G~~G~GKT~La 59 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLL 59 (227)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 346799999999999985
No 401
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=89.47 E-value=0.098 Score=50.16 Aligned_cols=17 Identities=35% Similarity=0.323 Sum_probs=15.6
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..|||||||||
T Consensus 89 ~~aIlG~nGsGKSTLLk 105 (1394)
T TIGR00956 89 LTVVLGRPGSGCSTLLK 105 (1394)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 68899999999999985
No 402
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=89.46 E-value=0.1 Score=41.90 Aligned_cols=22 Identities=32% Similarity=0.289 Sum_probs=18.3
Q ss_pred CCCCceEEEecccCCCccCCCC
Q 033696 92 DNRIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 92 ~~riPvTIiTGfLGsGKtTLLn 113 (113)
..+..-++|.|..|+||||||+
T Consensus 108 ~~~~~~~~i~g~~g~GKttl~~ 129 (270)
T TIGR02858 108 NNRVLNTLIISPPQCGKTTLLR 129 (270)
T ss_pred CCCeeEEEEEcCCCCCHHHHHH
Confidence 3445789999999999999974
No 403
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=89.38 E-value=0.099 Score=40.67 Aligned_cols=17 Identities=24% Similarity=0.366 Sum_probs=16.1
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++++.|..|.||+||+|
T Consensus 122 ~~~~~G~sgvGKStLiN 138 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLIN 138 (245)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 89999999999999987
No 404
>COG1106 Predicted ATPases [General function prediction only]
Probab=89.32 E-value=0.13 Score=43.95 Aligned_cols=18 Identities=33% Similarity=0.268 Sum_probs=16.9
Q ss_pred CceEEEecccCCCccCCC
Q 033696 95 IPATIITGFLGSGKNTGS 112 (113)
Q Consensus 95 iPvTIiTGfLGsGKtTLL 112 (113)
-||.||+|..|+|||.||
T Consensus 22 ~~in~I~G~N~sGKSNll 39 (371)
T COG1106 22 GKINIIYGANGAGKSNLL 39 (371)
T ss_pred cceEEEEcCCCCchhHHH
Confidence 789999999999999986
No 405
>PRK10869 recombination and repair protein; Provisional
Probab=89.18 E-value=0.12 Score=45.07 Aligned_cols=17 Identities=41% Similarity=0.544 Sum_probs=15.5
Q ss_pred ceEEEecccCCCccCCC
Q 033696 96 PATIITGFLGSGKNTGS 112 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLL 112 (113)
..+||||..|||||.||
T Consensus 23 glnvitGetGaGKS~il 39 (553)
T PRK10869 23 GMTVITGETGAGKSIAI 39 (553)
T ss_pred CcEEEECCCCCChHHHH
Confidence 68999999999999875
No 406
>PLN02840 tRNA dimethylallyltransferase
Probab=89.18 E-value=0.22 Score=43.24 Aligned_cols=19 Identities=26% Similarity=0.415 Sum_probs=16.3
Q ss_pred CCCceEEEecccCCCccCC
Q 033696 93 NRIPATIITGFLGSGKNTG 111 (113)
Q Consensus 93 ~riPvTIiTGfLGsGKtTL 111 (113)
.+-++++|.|.-|||||||
T Consensus 19 ~~~~vi~I~GptgsGKTtl 37 (421)
T PLN02840 19 KKEKVIVISGPTGAGKSRL 37 (421)
T ss_pred cCCeEEEEECCCCCCHHHH
Confidence 3445899999999999998
No 407
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=89.11 E-value=0.096 Score=42.65 Aligned_cols=17 Identities=41% Similarity=0.331 Sum_probs=15.1
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
-.||.|.-||||||+||
T Consensus 145 siii~G~t~sGKTt~ln 161 (312)
T COG0630 145 SIIICGGTASGKTTLLN 161 (312)
T ss_pred cEEEECCCCCCHHHHHH
Confidence 36889999999999986
No 408
>PLN03140 ABC transporter G family member; Provisional
Probab=89.05 E-value=0.11 Score=50.49 Aligned_cols=17 Identities=35% Similarity=0.427 Sum_probs=15.6
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..|||||||||
T Consensus 908 l~aL~G~sGaGKTTLL~ 924 (1470)
T PLN03140 908 LTALMGVSGAGKTTLMD 924 (1470)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 68899999999999985
No 409
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=89.02 E-value=0.11 Score=49.88 Aligned_cols=17 Identities=35% Similarity=0.366 Sum_probs=15.5
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..|||||||||
T Consensus 791 ~~aI~G~sGaGKSTLL~ 807 (1394)
T TIGR00956 791 LTALMGASGAGKTTLLN 807 (1394)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 67899999999999985
No 410
>PRK12288 GTPase RsgA; Reviewed
Probab=88.99 E-value=0.095 Score=43.42 Aligned_cols=17 Identities=29% Similarity=0.372 Sum_probs=15.7
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
+.++.|..|.||+||+|
T Consensus 207 i~~~vG~sgVGKSTLiN 223 (347)
T PRK12288 207 ISIFVGQSGVGKSSLIN 223 (347)
T ss_pred CEEEECCCCCCHHHHHH
Confidence 58999999999999987
No 411
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=88.94 E-value=0.12 Score=41.01 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=19.6
Q ss_pred CCCCceEEEecccCCCccCCCC
Q 033696 92 DNRIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 92 ~~riPvTIiTGfLGsGKtTLLn 113 (113)
.-..|..+|.|.-|+||||||+
T Consensus 23 ~i~~p~i~vvG~~~~GKSt~l~ 44 (240)
T smart00053 23 DLDLPQIAVVGGQSAGKSSVLE 44 (240)
T ss_pred CCCCCeEEEEcCCCccHHHHHH
Confidence 4678999999999999999975
No 412
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=88.90 E-value=0.14 Score=37.28 Aligned_cols=20 Identities=25% Similarity=0.059 Sum_probs=16.6
Q ss_pred CCCceEEEecccCCCccCCC
Q 033696 93 NRIPATIITGFLGSGKNTGS 112 (113)
Q Consensus 93 ~riPvTIiTGfLGsGKtTLL 112 (113)
..-+.++|+|.-|+|||+|+
T Consensus 36 ~~~~~lll~G~~G~GKT~la 55 (226)
T TIGR03420 36 KGDRFLYLWGESGSGKSHLL 55 (226)
T ss_pred CCCCeEEEECCCCCCHHHHH
Confidence 34567889999999999984
No 413
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=88.87 E-value=0.11 Score=42.96 Aligned_cols=18 Identities=44% Similarity=0.418 Sum_probs=15.8
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
--++|+|..||||||||+
T Consensus 179 ~~ili~G~tGsGKTTll~ 196 (340)
T TIGR03819 179 LAFLISGGTGSGKTTLLS 196 (340)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 378999999999999874
No 414
>PRK14974 cell division protein FtsY; Provisional
Probab=88.85 E-value=0.16 Score=42.21 Aligned_cols=20 Identities=25% Similarity=0.401 Sum_probs=16.6
Q ss_pred CCCceEEEecccCCCccCCC
Q 033696 93 NRIPATIITGFLGSGKNTGS 112 (113)
Q Consensus 93 ~riPvTIiTGfLGsGKtTLL 112 (113)
.+--+++++|..|+||||++
T Consensus 138 ~~~~vi~~~G~~GvGKTTti 157 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTI 157 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHH
Confidence 34568999999999999964
No 415
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=88.66 E-value=0.11 Score=45.21 Aligned_cols=17 Identities=47% Similarity=0.587 Sum_probs=14.5
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
.+-|+|..|||||||++
T Consensus 502 ~vaIvG~SGsGKSTLlk 518 (708)
T TIGR01193 502 KTTIVGMSGSGKSTLAK 518 (708)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 45789999999999963
No 416
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=88.65 E-value=0.24 Score=47.74 Aligned_cols=20 Identities=50% Similarity=0.627 Sum_probs=17.5
Q ss_pred CCCceEEEecccCCCccCCC
Q 033696 93 NRIPATIITGFLGSGKNTGS 112 (113)
Q Consensus 93 ~riPvTIiTGfLGsGKtTLL 112 (113)
+.=||+||.|..||||||=+
T Consensus 269 n~n~vvIIcGeTGsGKTTQv 288 (1172)
T KOG0926|consen 269 NENPVVIICGETGSGKTTQV 288 (1172)
T ss_pred hcCCeEEEecCCCCCccccc
Confidence 45699999999999999953
No 417
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=88.63 E-value=0.12 Score=46.43 Aligned_cols=17 Identities=41% Similarity=0.507 Sum_probs=15.8
Q ss_pred ceEEEecccCCCccCCC
Q 033696 96 PATIITGFLGSGKNTGS 112 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLL 112 (113)
++.||||.-|+||||++
T Consensus 339 ~~~iitGgpGTGKTt~l 355 (720)
T TIGR01448 339 KVVILTGGPGTGKTTIT 355 (720)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 59999999999999986
No 418
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=88.61 E-value=0.17 Score=37.87 Aligned_cols=17 Identities=35% Similarity=0.434 Sum_probs=15.0
Q ss_pred ceEEEecccCCCccCCC
Q 033696 96 PATIITGFLGSGKNTGS 112 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLL 112 (113)
=+++|+|..|+|||+|.
T Consensus 26 ~~~~i~G~~GsGKt~l~ 42 (234)
T PRK06067 26 SLILIEGDHGTGKSVLS 42 (234)
T ss_pred cEEEEECCCCCChHHHH
Confidence 38999999999999983
No 419
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=88.45 E-value=0.2 Score=41.42 Aligned_cols=17 Identities=35% Similarity=0.235 Sum_probs=15.3
Q ss_pred ceEEEecccCCCccCCC
Q 033696 96 PATIITGFLGSGKNTGS 112 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLL 112 (113)
-|+=|.|.+|+||||+|
T Consensus 29 ei~GlLG~NGAGKTT~L 45 (245)
T COG4555 29 EITGLLGENGAGKTTLL 45 (245)
T ss_pred eEEEEEcCCCCCchhHH
Confidence 47889999999999997
No 420
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=88.34 E-value=0.15 Score=40.55 Aligned_cols=20 Identities=25% Similarity=0.331 Sum_probs=16.9
Q ss_pred CCCceEEEecccCCCccCCC
Q 033696 93 NRIPATIITGFLGSGKNTGS 112 (113)
Q Consensus 93 ~riPvTIiTGfLGsGKtTLL 112 (113)
...+..+++|..|+|||+|+
T Consensus 49 ~~~~~~ll~GppG~GKT~la 68 (328)
T PRK00080 49 EALDHVLLYGPPGLGKTTLA 68 (328)
T ss_pred CCCCcEEEECCCCccHHHHH
Confidence 34567899999999999985
No 421
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=88.29 E-value=0.24 Score=38.13 Aligned_cols=20 Identities=30% Similarity=0.446 Sum_probs=16.8
Q ss_pred CCCceEEEecccCCCccCCC
Q 033696 93 NRIPATIITGFLGSGKNTGS 112 (113)
Q Consensus 93 ~riPvTIiTGfLGsGKtTLL 112 (113)
.+.+-.+++|..|+||||+.
T Consensus 40 ~~~~~vll~GppGtGKTtlA 59 (261)
T TIGR02881 40 KQVLHMIFKGNPGTGKTTVA 59 (261)
T ss_pred CCcceEEEEcCCCCCHHHHH
Confidence 45677899999999999973
No 422
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=88.29 E-value=0.13 Score=45.08 Aligned_cols=17 Identities=41% Similarity=0.405 Sum_probs=15.5
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|+|..|+||||||+
T Consensus 36 ~~~l~G~nGsGKSTLl~ 52 (648)
T PRK10535 36 MVAIVGASGSGKSTLMN 52 (648)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 78899999999999974
No 423
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=88.28 E-value=0.12 Score=45.50 Aligned_cols=16 Identities=38% Similarity=0.343 Sum_probs=13.7
Q ss_pred EEEecccCCCccCCCC
Q 033696 98 TIITGFLGSGKNTGSA 113 (113)
Q Consensus 98 TIiTGfLGsGKtTLLn 113 (113)
+-|.|.+|+||||||+
T Consensus 351 iaiiG~NG~GKSTLlk 366 (530)
T COG0488 351 IAIVGPNGAGKSTLLK 366 (530)
T ss_pred EEEECCCCCCHHHHHH
Confidence 3578999999999974
No 424
>PLN03073 ABC transporter F family; Provisional
Probab=88.27 E-value=0.13 Score=46.31 Aligned_cols=17 Identities=29% Similarity=0.178 Sum_probs=14.4
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
.+-|.|..||||||||+
T Consensus 205 ~~gLvG~NGsGKSTLLr 221 (718)
T PLN03073 205 HYGLVGRNGTGKTTFLR 221 (718)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36688999999999974
No 425
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=88.14 E-value=0.19 Score=41.11 Aligned_cols=19 Identities=26% Similarity=0.368 Sum_probs=16.3
Q ss_pred CCceEEEecccCCCccCCC
Q 033696 94 RIPATIITGFLGSGKNTGS 112 (113)
Q Consensus 94 riPvTIiTGfLGsGKtTLL 112 (113)
+--|+.+.|..|+||||++
T Consensus 113 ~~~vi~lvGpnGsGKTTt~ 131 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTI 131 (318)
T ss_pred CCeEEEEECCCCCcHHHHH
Confidence 4568889999999999974
No 426
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=88.12 E-value=0.13 Score=44.68 Aligned_cols=17 Identities=41% Similarity=0.315 Sum_probs=15.0
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
.+.|+|..|||||||++
T Consensus 485 ~vaivG~sGsGKSTL~~ 501 (694)
T TIGR01846 485 FIGIVGPSGSGKSTLTK 501 (694)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 56799999999999964
No 427
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=88.04 E-value=0.21 Score=39.80 Aligned_cols=17 Identities=35% Similarity=0.313 Sum_probs=15.1
Q ss_pred CceEEEecccCCCccCC
Q 033696 95 IPATIITGFLGSGKNTG 111 (113)
Q Consensus 95 iPvTIiTGfLGsGKtTL 111 (113)
==||.|+|..|+|||+|
T Consensus 102 g~vtei~G~~GsGKT~l 118 (317)
T PRK04301 102 QSITEFYGEFGSGKTQI 118 (317)
T ss_pred CcEEEEECCCCCCHhHH
Confidence 34899999999999997
No 428
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=87.98 E-value=0.17 Score=43.50 Aligned_cols=16 Identities=31% Similarity=0.306 Sum_probs=14.6
Q ss_pred eEEEecccCCCccCCC
Q 033696 97 ATIITGFLGSGKNTGS 112 (113)
Q Consensus 97 vTIiTGfLGsGKtTLL 112 (113)
++-+.|..||||||||
T Consensus 30 ~vaLlGpSGaGKsTlL 45 (345)
T COG1118 30 LVALLGPSGAGKSTLL 45 (345)
T ss_pred EEEEECCCCCcHHHHH
Confidence 5778999999999997
No 429
>PRK12289 GTPase RsgA; Reviewed
Probab=87.95 E-value=0.13 Score=42.81 Aligned_cols=17 Identities=29% Similarity=0.403 Sum_probs=15.8
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++++.|..|.||+||+|
T Consensus 174 i~v~iG~SgVGKSSLIN 190 (352)
T PRK12289 174 ITVVAGPSGVGKSSLIN 190 (352)
T ss_pred eEEEEeCCCCCHHHHHH
Confidence 58999999999999987
No 430
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=87.93 E-value=0.11 Score=42.56 Aligned_cols=17 Identities=35% Similarity=0.368 Sum_probs=15.0
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
.+-|+|..||||+|||+
T Consensus 30 f~fl~GpSGAGKSTllk 46 (223)
T COG2884 30 FVFLTGPSGAGKSTLLK 46 (223)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 57799999999999974
No 431
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=87.87 E-value=0.16 Score=38.32 Aligned_cols=19 Identities=32% Similarity=0.183 Sum_probs=16.1
Q ss_pred CCceEEEecccCCCccCCC
Q 033696 94 RIPATIITGFLGSGKNTGS 112 (113)
Q Consensus 94 riPvTIiTGfLGsGKtTLL 112 (113)
+--+++|+|..|+|||||+
T Consensus 29 ~g~~~~i~g~~G~GKT~l~ 47 (271)
T cd01122 29 KGELIILTAGTGVGKTTFL 47 (271)
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 3448999999999999974
No 432
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=87.86 E-value=0.15 Score=47.74 Aligned_cols=17 Identities=53% Similarity=0.505 Sum_probs=15.4
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|||..|||||||++
T Consensus 635 iv~VtGvsGSGKSTLl~ 651 (924)
T TIGR00630 635 FTCITGVSGSGKSTLIN 651 (924)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 78999999999999963
No 433
>PLN03025 replication factor C subunit; Provisional
Probab=87.85 E-value=0.24 Score=39.27 Aligned_cols=21 Identities=38% Similarity=0.670 Sum_probs=18.0
Q ss_pred CCCCceEEEecccCCCccCCC
Q 033696 92 DNRIPATIITGFLGSGKNTGS 112 (113)
Q Consensus 92 ~~riPvTIiTGfLGsGKtTLL 112 (113)
..++|-.++.|..|+||||+.
T Consensus 31 ~~~~~~lll~Gp~G~GKTtla 51 (319)
T PLN03025 31 DGNMPNLILSGPPGTGKTTSI 51 (319)
T ss_pred cCCCceEEEECCCCCCHHHHH
Confidence 356788999999999999974
No 434
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=87.83 E-value=0.18 Score=44.74 Aligned_cols=18 Identities=33% Similarity=0.362 Sum_probs=15.2
Q ss_pred CceEE-EecccCCCccCCC
Q 033696 95 IPATI-ITGFLGSGKNTGS 112 (113)
Q Consensus 95 iPvTI-iTGfLGsGKtTLL 112 (113)
-|++| |.|.-|||||||.
T Consensus 211 ~PlIIGIsG~qGSGKSTLa 229 (460)
T PLN03046 211 PPLVIGFSAPQGCGKTTLV 229 (460)
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 56665 9999999999984
No 435
>PLN02348 phosphoribulokinase
Probab=87.68 E-value=0.24 Score=42.75 Aligned_cols=17 Identities=24% Similarity=0.077 Sum_probs=14.0
Q ss_pred ceEEEecccCCCccCCC
Q 033696 96 PATIITGFLGSGKNTGS 112 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLL 112 (113)
.|+=|+|..|||||||.
T Consensus 50 ~IIGIaG~SGSGKSTfA 66 (395)
T PLN02348 50 VVIGLAADSGCGKSTFM 66 (395)
T ss_pred EEEEEECCCCCCHHHHH
Confidence 44449999999999984
No 436
>PRK13342 recombination factor protein RarA; Reviewed
Probab=87.41 E-value=0.25 Score=40.78 Aligned_cols=21 Identities=33% Similarity=0.476 Sum_probs=18.0
Q ss_pred CCCCceEEEecccCCCccCCC
Q 033696 92 DNRIPATIITGFLGSGKNTGS 112 (113)
Q Consensus 92 ~~riPvTIiTGfLGsGKtTLL 112 (113)
..++|..|++|..|+|||||.
T Consensus 33 ~~~~~~ilL~GppGtGKTtLA 53 (413)
T PRK13342 33 AGRLSSMILWGPPGTGKTTLA 53 (413)
T ss_pred cCCCceEEEECCCCCCHHHHH
Confidence 356788999999999999984
No 437
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=87.40 E-value=0.17 Score=42.74 Aligned_cols=20 Identities=30% Similarity=0.125 Sum_probs=17.4
Q ss_pred CCCceEEEecccCCCccCCC
Q 033696 93 NRIPATIITGFLGSGKNTGS 112 (113)
Q Consensus 93 ~riPvTIiTGfLGsGKtTLL 112 (113)
.-+..++|+|--|+|||||.
T Consensus 217 ~~~~~IvI~G~~gsGKTTL~ 236 (399)
T PRK08099 217 FFVRTVAILGGESSGKSTLV 236 (399)
T ss_pred CCCcEEEEEcCCCCCHHHHH
Confidence 34778999999999999985
No 438
>PLN02674 adenylate kinase
Probab=87.32 E-value=0.27 Score=39.31 Aligned_cols=18 Identities=39% Similarity=0.372 Sum_probs=15.5
Q ss_pred CCceEEEecccCCCccCC
Q 033696 94 RIPATIITGFLGSGKNTG 111 (113)
Q Consensus 94 riPvTIiTGfLGsGKtTL 111 (113)
..+..+|.|..||||+|+
T Consensus 30 ~~~~i~l~G~PGsGKgT~ 47 (244)
T PLN02674 30 PDKRLILIGPPGSGKGTQ 47 (244)
T ss_pred cCceEEEECCCCCCHHHH
Confidence 346789999999999996
No 439
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=87.31 E-value=0.19 Score=44.06 Aligned_cols=18 Identities=33% Similarity=0.392 Sum_probs=15.8
Q ss_pred CceEEEecccCCCccCCC
Q 033696 95 IPATIITGFLGSGKNTGS 112 (113)
Q Consensus 95 iPvTIiTGfLGsGKtTLL 112 (113)
-.|.|+||+-|+||||.+
T Consensus 45 ~~iLlLtGP~G~GKtttv 62 (519)
T PF03215_consen 45 KRILLLTGPSGCGKTTTV 62 (519)
T ss_pred cceEEEECCCCCCHHHHH
Confidence 349999999999999974
No 440
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=87.28 E-value=0.2 Score=42.09 Aligned_cols=16 Identities=31% Similarity=0.418 Sum_probs=14.4
Q ss_pred EEEecccCCCccCCCC
Q 033696 98 TIITGFLGSGKNTGSA 113 (113)
Q Consensus 98 TIiTGfLGsGKtTLLn 113 (113)
.++.|..|+||||||+
T Consensus 43 cLlVGaNGaGKtTlLK 58 (291)
T KOG2355|consen 43 CLLVGANGAGKTTLLK 58 (291)
T ss_pred EEEEecCCCchhhhHH
Confidence 6889999999999974
No 441
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=87.26 E-value=0.16 Score=48.88 Aligned_cols=17 Identities=29% Similarity=0.329 Sum_probs=15.4
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 454 ~~~I~G~~GsGKSTLl~ 470 (1490)
T TIGR01271 454 LLAVAGSTGSGKSSLLM 470 (1490)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 68999999999999974
No 442
>PRK03003 GTP-binding protein Der; Reviewed
Probab=87.25 E-value=0.19 Score=42.32 Aligned_cols=21 Identities=24% Similarity=0.324 Sum_probs=19.1
Q ss_pred CCCceEEEecccCCCccCCCC
Q 033696 93 NRIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 93 ~riPvTIiTGfLGsGKtTLLn 113 (113)
..+|.++|.|..|+|||||+|
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~n 56 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVN 56 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHH
Confidence 568999999999999999976
No 443
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=87.22 E-value=0.23 Score=37.80 Aligned_cols=17 Identities=24% Similarity=0.315 Sum_probs=15.0
Q ss_pred CceEEEecccCCCccCC
Q 033696 95 IPATIITGFLGSGKNTG 111 (113)
Q Consensus 95 iPvTIiTGfLGsGKtTL 111 (113)
==+++|+|..|+|||+|
T Consensus 21 gs~~lI~G~pGsGKT~l 37 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIF 37 (237)
T ss_pred CeEEEEEcCCCCCHHHH
Confidence 34789999999999997
No 444
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=87.21 E-value=0.21 Score=44.04 Aligned_cols=15 Identities=40% Similarity=0.623 Sum_probs=13.9
Q ss_pred eEEEecccCCCccCC
Q 033696 97 ATIITGFLGSGKNTG 111 (113)
Q Consensus 97 vTIiTGfLGsGKtTL 111 (113)
+++++|+-||||||+
T Consensus 394 ~Ivl~Gl~GSGKSTi 408 (568)
T PRK05537 394 TVFFTGLSGAGKSTI 408 (568)
T ss_pred EEEEECCCCChHHHH
Confidence 778899999999997
No 445
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=87.16 E-value=0.17 Score=45.77 Aligned_cols=18 Identities=28% Similarity=0.423 Sum_probs=16.2
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
.+.||+|+-|.||||+|+
T Consensus 369 ~~~il~G~aGTGKTtll~ 386 (744)
T TIGR02768 369 DIAVVVGRAGTGKSTMLK 386 (744)
T ss_pred CEEEEEecCCCCHHHHHH
Confidence 589999999999999863
No 446
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=87.06 E-value=0.27 Score=39.42 Aligned_cols=23 Identities=26% Similarity=0.257 Sum_probs=18.5
Q ss_pred CCCCCCCceEEEecccCCCccCC
Q 033696 89 IPPDNRIPATIITGFLGSGKNTG 111 (113)
Q Consensus 89 ~~~~~riPvTIiTGfLGsGKtTL 111 (113)
.+.-++-..++++|+.||||||+
T Consensus 127 ~~~~~~~~~I~l~G~~GsGKStv 149 (309)
T PRK08154 127 GRRAARRRRIALIGLRGAGKSTL 149 (309)
T ss_pred hhhccCCCEEEEECCCCCCHHHH
Confidence 34455566899999999999997
No 447
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=87.06 E-value=0.2 Score=39.19 Aligned_cols=19 Identities=32% Similarity=0.431 Sum_probs=16.3
Q ss_pred CCceEEEecccCCCccCCC
Q 033696 94 RIPATIITGFLGSGKNTGS 112 (113)
Q Consensus 94 riPvTIiTGfLGsGKtTLL 112 (113)
+-+..+|+|..|+|||+++
T Consensus 39 ~~~~i~I~G~~GtGKT~l~ 57 (365)
T TIGR02928 39 RPSNVFIYGKTGTGKTAVT 57 (365)
T ss_pred CCCcEEEECCCCCCHHHHH
Confidence 4467899999999999985
No 448
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=86.97 E-value=0.2 Score=49.09 Aligned_cols=18 Identities=44% Similarity=0.553 Sum_probs=16.5
Q ss_pred CceEEEecccCCCccCCC
Q 033696 95 IPATIITGFLGSGKNTGS 112 (113)
Q Consensus 95 iPvTIiTGfLGsGKtTLL 112 (113)
-|.|+|-|..|+||||..
T Consensus 27 sPlTLIvG~NG~GKTTiI 44 (1294)
T KOG0962|consen 27 SPLTLIVGANGTGKTTII 44 (1294)
T ss_pred CCeeeEecCCCCCchhHH
Confidence 599999999999999974
No 449
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=86.77 E-value=0.2 Score=42.67 Aligned_cols=17 Identities=35% Similarity=0.399 Sum_probs=15.1
Q ss_pred ceEEEecccCCCccCCC
Q 033696 96 PATIITGFLGSGKNTGS 112 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLL 112 (113)
-.+++-|..||||||+|
T Consensus 28 ef~vliGpSGsGKTTtL 44 (309)
T COG1125 28 EFLVLIGPSGSGKTTTL 44 (309)
T ss_pred eEEEEECCCCCcHHHHH
Confidence 36889999999999986
No 450
>PTZ00243 ABC transporter; Provisional
Probab=86.74 E-value=0.18 Score=48.99 Aligned_cols=17 Identities=41% Similarity=0.481 Sum_probs=15.6
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 688 ~~~IiG~nGsGKSTLL~ 704 (1560)
T PTZ00243 688 LTVVLGATGSGKSTLLQ 704 (1560)
T ss_pred EEEEECCCCCcHHHHHH
Confidence 68999999999999974
No 451
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=86.67 E-value=0.22 Score=41.39 Aligned_cols=18 Identities=39% Similarity=0.213 Sum_probs=15.8
Q ss_pred CceEEEecccCCCccCCC
Q 033696 95 IPATIITGFLGSGKNTGS 112 (113)
Q Consensus 95 iPvTIiTGfLGsGKtTLL 112 (113)
=-||-+-|+.|+||+|||
T Consensus 27 g~iTs~IGPNGAGKSTLL 44 (252)
T COG4604 27 GGITSIIGPNGAGKSTLL 44 (252)
T ss_pred CceeEEECCCCccHHHHH
Confidence 347889999999999996
No 452
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=86.66 E-value=0.21 Score=42.71 Aligned_cols=16 Identities=38% Similarity=0.318 Sum_probs=15.0
Q ss_pred eEEEecccCCCccCCC
Q 033696 97 ATIITGFLGSGKNTGS 112 (113)
Q Consensus 97 vTIiTGfLGsGKtTLL 112 (113)
+++|.|..|+|||||+
T Consensus 96 vilI~G~pGsGKTTL~ 111 (454)
T TIGR00416 96 LILIGGDPGIGKSTLL 111 (454)
T ss_pred EEEEEcCCCCCHHHHH
Confidence 8999999999999985
No 453
>PTZ00035 Rad51 protein; Provisional
Probab=86.64 E-value=0.24 Score=40.72 Aligned_cols=18 Identities=22% Similarity=0.126 Sum_probs=15.7
Q ss_pred CceEEEecccCCCccCCC
Q 033696 95 IPATIITGFLGSGKNTGS 112 (113)
Q Consensus 95 iPvTIiTGfLGsGKtTLL 112 (113)
-=+|.|+|..|+|||+|+
T Consensus 118 G~iteI~G~~GsGKT~l~ 135 (337)
T PTZ00035 118 GSITELFGEFRTGKTQLC 135 (337)
T ss_pred CeEEEEECCCCCchhHHH
Confidence 348999999999999984
No 454
>PRK09866 hypothetical protein; Provisional
Probab=86.56 E-value=0.19 Score=46.90 Aligned_cols=18 Identities=28% Similarity=0.313 Sum_probs=17.2
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
|++.|.|..|+|||||+|
T Consensus 70 ~~valvG~sgaGKSTLiN 87 (741)
T PRK09866 70 MVLAIVGTMKAGKSTTIN 87 (741)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 999999999999999976
No 455
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=86.44 E-value=0.22 Score=45.53 Aligned_cols=18 Identities=28% Similarity=0.235 Sum_probs=16.2
Q ss_pred CceEEEecccCCCccCCC
Q 033696 95 IPATIITGFLGSGKNTGS 112 (113)
Q Consensus 95 iPvTIiTGfLGsGKtTLL 112 (113)
-.+.||||.+++||||+|
T Consensus 327 ~~~~iITGpN~gGKTt~l 344 (782)
T PRK00409 327 KTVLVITGPNTGGKTVTL 344 (782)
T ss_pred ceEEEEECCCCCCcHHHH
Confidence 458999999999999986
No 456
>PLN02772 guanylate kinase
Probab=86.37 E-value=0.28 Score=42.44 Aligned_cols=32 Identities=22% Similarity=0.251 Sum_probs=21.2
Q ss_pred ccccccCCC--CCCCCceEEEecccCCCccCCCC
Q 033696 82 DSDLLTKIP--PDNRIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 82 ~s~~~~~~~--~~~riPvTIiTGfLGsGKtTLLn 113 (113)
+++|..... +..+.-+.||+|+.|+||+||++
T Consensus 120 ~~eV~~~~~~~~~~~~k~iVlsGPSGvGKsTL~~ 153 (398)
T PLN02772 120 GTEVVAWSKGVRGNAEKPIVISGPSGVGKGTLIS 153 (398)
T ss_pred cceeeecccCCCCCCCcEEEEECCCCCCHHHHHH
Confidence 444444432 33333478999999999999863
No 457
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=86.35 E-value=0.18 Score=41.23 Aligned_cols=17 Identities=41% Similarity=0.325 Sum_probs=14.4
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
-..|||+.|+||+|||+
T Consensus 31 ~iaitGPSG~GKStllk 47 (223)
T COG4619 31 FIAITGPSGCGKSTLLK 47 (223)
T ss_pred eEEEeCCCCccHHHHHH
Confidence 35789999999999963
No 458
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=86.26 E-value=0.33 Score=39.67 Aligned_cols=15 Identities=27% Similarity=0.215 Sum_probs=14.5
Q ss_pred eEEEecccCCCccCC
Q 033696 97 ATIITGFLGSGKNTG 111 (113)
Q Consensus 97 vTIiTGfLGsGKtTL 111 (113)
||.|+|..|+|||+|
T Consensus 98 iteI~G~~GsGKTql 112 (313)
T TIGR02238 98 ITEVFGEFRCGKTQL 112 (313)
T ss_pred EEEEECCCCCCcCHH
Confidence 999999999999997
No 459
>PRK06851 hypothetical protein; Provisional
Probab=86.26 E-value=0.19 Score=42.55 Aligned_cols=18 Identities=33% Similarity=0.276 Sum_probs=16.0
Q ss_pred CceEEEecccCCCccCCC
Q 033696 95 IPATIITGFLGSGKNTGS 112 (113)
Q Consensus 95 iPvTIiTGfLGsGKtTLL 112 (113)
-.+.||+|..|+|||||+
T Consensus 30 ~~~~il~G~pGtGKStl~ 47 (367)
T PRK06851 30 NRIFILKGGPGTGKSTLM 47 (367)
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 357999999999999986
No 460
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=86.10 E-value=0.26 Score=34.66 Aligned_cols=21 Identities=14% Similarity=0.213 Sum_probs=17.5
Q ss_pred CCCceEEEecccCCCccCCCC
Q 033696 93 NRIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 93 ~riPvTIiTGfLGsGKtTLLn 113 (113)
.+...+.+.|..|+||+||+|
T Consensus 98 ~~~~~~~~~G~~~~GKstlin 118 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVIN 118 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHH
Confidence 345667899999999999976
No 461
>PRK04863 mukB cell division protein MukB; Provisional
Probab=86.07 E-value=0.21 Score=49.05 Aligned_cols=18 Identities=39% Similarity=0.431 Sum_probs=16.2
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
.+++|+|..|+||||+|+
T Consensus 28 ~~~~l~G~NGaGKSTll~ 45 (1486)
T PRK04863 28 LVTTLSGGNGAGKSTTMA 45 (1486)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 599999999999999863
No 462
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=86.00 E-value=0.3 Score=36.13 Aligned_cols=17 Identities=29% Similarity=0.233 Sum_probs=14.9
Q ss_pred ceEEEecccCCCccCCC
Q 033696 96 PATIITGFLGSGKNTGS 112 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLL 112 (113)
=+++|.|..|+|||||.
T Consensus 21 ~~~~i~G~~G~GKT~l~ 37 (229)
T TIGR03881 21 FFVAVTGEPGTGKTIFC 37 (229)
T ss_pred eEEEEECCCCCChHHHH
Confidence 36899999999999973
No 463
>PLN02748 tRNA dimethylallyltransferase
Probab=85.95 E-value=0.48 Score=41.45 Aligned_cols=20 Identities=25% Similarity=0.411 Sum_probs=17.2
Q ss_pred CCCCceEEEecccCCCccCC
Q 033696 92 DNRIPATIITGFLGSGKNTG 111 (113)
Q Consensus 92 ~~riPvTIiTGfLGsGKtTL 111 (113)
..+-++++|.|..|+|||+|
T Consensus 19 ~~~~~~i~i~GptgsGKs~l 38 (468)
T PLN02748 19 KGKAKVVVVMGPTGSGKSKL 38 (468)
T ss_pred CCCCCEEEEECCCCCCHHHH
Confidence 45566899999999999998
No 464
>PRK05973 replicative DNA helicase; Provisional
Probab=85.82 E-value=0.28 Score=39.07 Aligned_cols=18 Identities=17% Similarity=0.062 Sum_probs=15.5
Q ss_pred CCceEEEecccCCCccCC
Q 033696 94 RIPATIITGFLGSGKNTG 111 (113)
Q Consensus 94 riPvTIiTGfLGsGKtTL 111 (113)
+==+++|.|..|+|||+|
T Consensus 63 ~Gsl~LIaG~PG~GKT~l 80 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLL 80 (237)
T ss_pred CCCEEEEEeCCCCCHHHH
Confidence 334899999999999997
No 465
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=85.78 E-value=0.21 Score=44.21 Aligned_cols=18 Identities=39% Similarity=0.440 Sum_probs=16.1
Q ss_pred CceEEEecccCCCccCCC
Q 033696 95 IPATIITGFLGSGKNTGS 112 (113)
Q Consensus 95 iPvTIiTGfLGsGKtTLL 112 (113)
=+++||+|..|+||||++
T Consensus 160 ~~~~vitGgpGTGKTt~v 177 (586)
T TIGR01447 160 SNFSLITGGPGTGKTTTV 177 (586)
T ss_pred CCeEEEEcCCCCCHHHHH
Confidence 479999999999999964
No 466
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=85.76 E-value=0.29 Score=41.60 Aligned_cols=16 Identities=31% Similarity=0.507 Sum_probs=14.6
Q ss_pred ceEEEecccCCCccCC
Q 033696 96 PATIITGFLGSGKNTG 111 (113)
Q Consensus 96 PvTIiTGfLGsGKtTL 111 (113)
=+++|+|..|+|||||
T Consensus 22 ~~~Li~G~pGsGKT~l 37 (484)
T TIGR02655 22 RSTLVSGTSGTGKTLF 37 (484)
T ss_pred eEEEEEcCCCCCHHHH
Confidence 3789999999999998
No 467
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=85.73 E-value=0.17 Score=41.70 Aligned_cols=14 Identities=43% Similarity=0.498 Sum_probs=12.3
Q ss_pred EecccCCCccCCCC
Q 033696 100 ITGFLGSGKNTGSA 113 (113)
Q Consensus 100 iTGfLGsGKtTLLn 113 (113)
|-|.+||||||||+
T Consensus 58 iiG~NGaGKSTLlk 71 (249)
T COG1134 58 IIGHNGAGKSTLLK 71 (249)
T ss_pred EECCCCCcHHHHHH
Confidence 56999999999974
No 468
>PLN02796 D-glycerate 3-kinase
Probab=85.72 E-value=0.21 Score=42.32 Aligned_cols=16 Identities=31% Similarity=0.204 Sum_probs=13.7
Q ss_pred eEEEecccCCCccCCC
Q 033696 97 ATIITGFLGSGKNTGS 112 (113)
Q Consensus 97 vTIiTGfLGsGKtTLL 112 (113)
++-|.|.-|||||||+
T Consensus 102 iIGI~G~sGSGKSTLa 117 (347)
T PLN02796 102 VIGISAPQGCGKTTLV 117 (347)
T ss_pred EEEEECCCCCcHHHHH
Confidence 5568899999999985
No 469
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=85.65 E-value=0.27 Score=41.76 Aligned_cols=17 Identities=29% Similarity=0.354 Sum_probs=15.4
Q ss_pred ceEEEecccCCCccCCC
Q 033696 96 PATIITGFLGSGKNTGS 112 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLL 112 (113)
-++++.|..|+||||++
T Consensus 138 ~ii~lvGptGvGKTTti 154 (374)
T PRK14722 138 GVFALMGPTGVGKTTTT 154 (374)
T ss_pred cEEEEECCCCCCHHHHH
Confidence 48999999999999985
No 470
>PRK04328 hypothetical protein; Provisional
Probab=85.64 E-value=0.31 Score=37.75 Aligned_cols=15 Identities=27% Similarity=0.430 Sum_probs=14.2
Q ss_pred eEEEecccCCCccCC
Q 033696 97 ATIITGFLGSGKNTG 111 (113)
Q Consensus 97 vTIiTGfLGsGKtTL 111 (113)
+++|+|..|+|||+|
T Consensus 25 ~ili~G~pGsGKT~l 39 (249)
T PRK04328 25 VVLLSGGPGTGKSIF 39 (249)
T ss_pred EEEEEcCCCCCHHHH
Confidence 799999999999997
No 471
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=85.40 E-value=0.36 Score=40.34 Aligned_cols=16 Identities=31% Similarity=0.100 Sum_probs=14.9
Q ss_pred ceEEEecccCCCccCC
Q 033696 96 PATIITGFLGSGKNTG 111 (113)
Q Consensus 96 PvTIiTGfLGsGKtTL 111 (113)
=||.|+|..|+|||+|
T Consensus 127 ~ItEI~G~~GsGKTql 142 (344)
T PLN03187 127 CITEAFGEFRSGKTQL 142 (344)
T ss_pred eEEEEecCCCCChhHH
Confidence 4899999999999997
No 472
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=85.39 E-value=0.38 Score=40.02 Aligned_cols=18 Identities=33% Similarity=0.469 Sum_probs=15.2
Q ss_pred CCc-eEEEecccCCCccCC
Q 033696 94 RIP-ATIITGFLGSGKNTG 111 (113)
Q Consensus 94 riP-vTIiTGfLGsGKtTL 111 (113)
+.| +.+|+|..|+||||+
T Consensus 90 ~~p~iIlI~G~sgsGKStl 108 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTI 108 (301)
T ss_pred CCCEEEEEECCCCCCHHHH
Confidence 456 677899999999997
No 473
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=85.38 E-value=0.25 Score=40.25 Aligned_cols=19 Identities=26% Similarity=0.230 Sum_probs=16.2
Q ss_pred CceEEEecccCCCccCCCC
Q 033696 95 IPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 95 iPvTIiTGfLGsGKtTLLn 113 (113)
...++|.|..|+|||||.|
T Consensus 162 ~~~~~~~G~~~~gkstl~~ 180 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVN 180 (325)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4578999999999999954
No 474
>PRK09183 transposase/IS protein; Provisional
Probab=85.34 E-value=0.23 Score=39.05 Aligned_cols=17 Identities=24% Similarity=0.319 Sum_probs=14.9
Q ss_pred ceEEEecccCCCccCCC
Q 033696 96 PATIITGFLGSGKNTGS 112 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLL 112 (113)
..++|.|..|+|||+|.
T Consensus 103 ~~v~l~Gp~GtGKThLa 119 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLA 119 (259)
T ss_pred CeEEEEeCCCCCHHHHH
Confidence 46889999999999984
No 475
>COG1162 Predicted GTPases [General function prediction only]
Probab=85.32 E-value=0.27 Score=41.18 Aligned_cols=17 Identities=35% Similarity=0.403 Sum_probs=16.4
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++|+.|-.|.||+||+|
T Consensus 166 ~svl~GqSGVGKSSLiN 182 (301)
T COG1162 166 ITVLLGQSGVGKSTLIN 182 (301)
T ss_pred eEEEECCCCCcHHHHHH
Confidence 89999999999999987
No 476
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=85.28 E-value=0.27 Score=44.06 Aligned_cols=18 Identities=33% Similarity=0.444 Sum_probs=16.2
Q ss_pred CceEEEecccCCCccCCC
Q 033696 95 IPATIITGFLGSGKNTGS 112 (113)
Q Consensus 95 iPvTIiTGfLGsGKtTLL 112 (113)
=+++||||..|.||||++
T Consensus 167 ~~~~vItGgpGTGKTt~v 184 (615)
T PRK10875 167 RRISVISGGPGTGKTTTV 184 (615)
T ss_pred CCeEEEEeCCCCCHHHHH
Confidence 479999999999999974
No 477
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=85.13 E-value=0.36 Score=41.74 Aligned_cols=21 Identities=33% Similarity=0.408 Sum_probs=17.4
Q ss_pred CCCCceEEEecccCCCccCCC
Q 033696 92 DNRIPATIITGFLGSGKNTGS 112 (113)
Q Consensus 92 ~~riPvTIiTGfLGsGKtTLL 112 (113)
+.+-..++|||..||||||-|
T Consensus 122 ~~~~GLILVTGpTGSGKSTTl 142 (353)
T COG2805 122 ESPRGLILVTGPTGSGKSTTL 142 (353)
T ss_pred hCCCceEEEeCCCCCcHHHHH
Confidence 455678999999999999864
No 478
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=85.00 E-value=0.35 Score=38.51 Aligned_cols=20 Identities=30% Similarity=0.426 Sum_probs=15.9
Q ss_pred CCCceEEEecccCCCccCCC
Q 033696 93 NRIPATIITGFLGSGKNTGS 112 (113)
Q Consensus 93 ~riPvTIiTGfLGsGKtTLL 112 (113)
.+.-+++++|..|+||||++
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~ 89 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTI 89 (272)
T ss_pred CCCeEEEEECCCCCcHHHHH
Confidence 33457888899999999963
No 479
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=84.99 E-value=0.41 Score=39.71 Aligned_cols=17 Identities=29% Similarity=0.356 Sum_probs=14.0
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
.=.|-|++|+||||++.
T Consensus 33 lr~lIGpNGAGKTT~mD 49 (249)
T COG4674 33 LRVLIGPNGAGKTTLMD 49 (249)
T ss_pred EEEEECCCCCCceeeee
Confidence 34677999999999963
No 480
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=84.80 E-value=0.23 Score=34.49 Aligned_cols=17 Identities=18% Similarity=0.253 Sum_probs=15.2
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
..++.|..|+|||||+|
T Consensus 85 ~~~~~G~~~vGKstlin 101 (141)
T cd01857 85 TIGLVGYPNVGKSSLIN 101 (141)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 57889999999999976
No 481
>PLN02318 phosphoribulokinase/uridine kinase
Probab=84.75 E-value=0.28 Score=45.17 Aligned_cols=20 Identities=25% Similarity=0.262 Sum_probs=17.2
Q ss_pred CCCceEEEecccCCCccCCC
Q 033696 93 NRIPATIITGFLGSGKNTGS 112 (113)
Q Consensus 93 ~riPvTIiTGfLGsGKtTLL 112 (113)
.+.-|+-|.|..|||||||.
T Consensus 63 ~~riIIGIaGpSGSGKTTLA 82 (656)
T PLN02318 63 DGIILVGVAGPSGAGKTVFT 82 (656)
T ss_pred CCeEEEEEECCCCCcHHHHH
Confidence 45678889999999999985
No 482
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=84.73 E-value=0.36 Score=39.29 Aligned_cols=20 Identities=25% Similarity=0.275 Sum_probs=15.6
Q ss_pred CCCCceEEEecccCCCccCC
Q 033696 92 DNRIPATIITGFLGSGKNTG 111 (113)
Q Consensus 92 ~~riPvTIiTGfLGsGKtTL 111 (113)
...+|=.|+.|+.|.|||||
T Consensus 47 ~~~l~h~lf~GPPG~GKTTL 66 (233)
T PF05496_consen 47 GEALDHMLFYGPPGLGKTTL 66 (233)
T ss_dssp TS---EEEEESSTTSSHHHH
T ss_pred CCCcceEEEECCCccchhHH
Confidence 45689999999999999998
No 483
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=84.72 E-value=0.26 Score=42.38 Aligned_cols=17 Identities=29% Similarity=0.360 Sum_probs=15.6
Q ss_pred ceEEEecccCCCccCCC
Q 033696 96 PATIITGFLGSGKNTGS 112 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLL 112 (113)
-++.+.|..|+||||+|
T Consensus 192 ~vi~lvGpnG~GKTTtl 208 (420)
T PRK14721 192 GVYALIGPTGVGKTTTT 208 (420)
T ss_pred cEEEEECCCCCCHHHHH
Confidence 58999999999999986
No 484
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=84.67 E-value=0.32 Score=40.43 Aligned_cols=17 Identities=35% Similarity=0.344 Sum_probs=15.3
Q ss_pred ceEEEecccCCCccCCC
Q 033696 96 PATIITGFLGSGKNTGS 112 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLL 112 (113)
-||-+-|+.|+||+|||
T Consensus 34 ~VTAlIGPSGcGKST~L 50 (253)
T COG1117 34 KVTALIGPSGCGKSTLL 50 (253)
T ss_pred ceEEEECCCCcCHHHHH
Confidence 47888999999999996
No 485
>COG3451 VirB4 Type IV secretory pathway, VirB4 components [Intracellular trafficking and secretion]
Probab=84.66 E-value=0.24 Score=45.58 Aligned_cols=20 Identities=30% Similarity=0.388 Sum_probs=17.4
Q ss_pred CCceEEEecccCCCccCCCC
Q 033696 94 RIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 94 riPvTIiTGfLGsGKtTLLn 113 (113)
.+.=|.|.|.-|+||||||+
T Consensus 435 d~ghT~I~G~tGaGKTvLl~ 454 (796)
T COG3451 435 DVGHTLIIGPTGAGKTVLLS 454 (796)
T ss_pred CCCCeEEECCCCCCHHHHHH
Confidence 44589999999999999974
No 486
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=84.39 E-value=0.27 Score=47.42 Aligned_cols=17 Identities=24% Similarity=0.401 Sum_probs=15.2
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
.+.|.|..||||||||+
T Consensus 666 ~v~IvG~~GsGKSTLl~ 682 (1522)
T TIGR00957 666 LVAVVGQVGCGKSSLLS 682 (1522)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 57899999999999974
No 487
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=84.38 E-value=0.46 Score=38.71 Aligned_cols=20 Identities=25% Similarity=0.145 Sum_probs=16.7
Q ss_pred CCCceEEEecccCCCccCCC
Q 033696 93 NRIPATIITGFLGSGKNTGS 112 (113)
Q Consensus 93 ~riPvTIiTGfLGsGKtTLL 112 (113)
.+-=||+|.|..|+|||+|.
T Consensus 94 ~~g~i~~i~G~~g~GKT~l~ 113 (316)
T TIGR02239 94 ETGSITEIFGEFRTGKTQLC 113 (316)
T ss_pred CCCeEEEEECCCCCCcCHHH
Confidence 33558999999999999984
No 488
>PLN03232 ABC transporter C family member; Provisional
Probab=84.24 E-value=0.28 Score=47.28 Aligned_cols=17 Identities=29% Similarity=0.307 Sum_probs=15.3
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
.+.|.|..||||||||+
T Consensus 645 ~vaIvG~sGSGKSTLl~ 661 (1495)
T PLN03232 645 LVAIVGGTGEGKTSLIS 661 (1495)
T ss_pred EEEEECCCCCcHHHHHH
Confidence 67899999999999974
No 489
>COG2262 HflX GTPases [General function prediction only]
Probab=84.22 E-value=0.31 Score=42.66 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=22.8
Q ss_pred CCCCCCCCceEEEecccCCCccCCCC
Q 033696 88 KIPPDNRIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 88 ~~~~~~riPvTIiTGfLGsGKtTLLn 113 (113)
..+....+|..-+.||-.+||+||+|
T Consensus 185 ~~R~~~~~p~vaLvGYTNAGKSTL~N 210 (411)
T COG2262 185 KKRSRSGIPLVALVGYTNAGKSTLFN 210 (411)
T ss_pred hhhcccCCCeEEEEeeccccHHHHHH
Confidence 44556789999999999999999987
No 490
>COG1195 RecF Recombinational DNA repair ATPase (RecF pathway) [DNA replication, recombination, and repair]
Probab=84.12 E-value=0.35 Score=41.41 Aligned_cols=17 Identities=24% Similarity=0.309 Sum_probs=15.5
Q ss_pred ceEEEecccCCCccCCC
Q 033696 96 PATIITGFLGSGKNTGS 112 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLL 112 (113)
.++|++|.+|+|||.||
T Consensus 24 ~~nvl~G~NgqGKTNlL 40 (363)
T COG1195 24 GVNVLVGENGQGKTNLL 40 (363)
T ss_pred CcEEEECCCCCchHHHH
Confidence 57999999999999886
No 491
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=84.11 E-value=0.34 Score=45.75 Aligned_cols=21 Identities=33% Similarity=0.381 Sum_probs=18.8
Q ss_pred CCCceEEEecccCCCccCCCC
Q 033696 93 NRIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 93 ~riPvTIiTGfLGsGKtTLLn 113 (113)
-.+|-.+|.|.-||||||||+
T Consensus 109 Y~LPWYlviG~~gsGKtt~l~ 129 (1169)
T TIGR03348 109 YDLPWYLVIGPPGSGKTTLLQ 129 (1169)
T ss_pred hcCCCEEEECCCCCchhHHHH
Confidence 358999999999999999974
No 492
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=84.03 E-value=0.3 Score=45.86 Aligned_cols=17 Identities=47% Similarity=0.487 Sum_probs=0.0
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|||..|||||||+.
T Consensus 637 ivgVtGvsGSGKSTLl~ 653 (943)
T PRK00349 637 FTCVTGVSGSGKSTLIN 653 (943)
T ss_pred EEEEEcCCCCCHHHHHH
No 493
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=83.97 E-value=0.37 Score=37.39 Aligned_cols=19 Identities=26% Similarity=0.107 Sum_probs=16.7
Q ss_pred CCceEEEecccCCCccCCC
Q 033696 94 RIPATIITGFLGSGKNTGS 112 (113)
Q Consensus 94 riPvTIiTGfLGsGKtTLL 112 (113)
+-.+.+|||..|+||||||
T Consensus 29 ~~~~~~itG~n~~gKs~~l 47 (218)
T cd03286 29 SPRILVLTGPNMGGKSTLL 47 (218)
T ss_pred CCcEEEEECCCCCchHHHH
Confidence 3468999999999999986
No 494
>PRK13853 type IV secretion system protein VirB4; Provisional
Probab=83.72 E-value=0.35 Score=43.69 Aligned_cols=20 Identities=35% Similarity=0.395 Sum_probs=17.5
Q ss_pred CCceEEEecccCCCccCCCC
Q 033696 94 RIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 94 riPvTIiTGfLGsGKtTLLn 113 (113)
.++-++|.|..|||||||+|
T Consensus 425 ~~g~~~I~G~tGsGKS~l~~ 444 (789)
T PRK13853 425 DVGMTAIFGPIGRGKTTLMT 444 (789)
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 36779999999999999964
No 495
>PLN02459 probable adenylate kinase
Probab=83.55 E-value=0.62 Score=37.95 Aligned_cols=15 Identities=33% Similarity=0.375 Sum_probs=13.1
Q ss_pred eEEEecccCCCccCC
Q 033696 97 ATIITGFLGSGKNTG 111 (113)
Q Consensus 97 vTIiTGfLGsGKtTL 111 (113)
..||.|..||||+|+
T Consensus 31 ~ii~~G~PGsGK~T~ 45 (261)
T PLN02459 31 NWVFLGCPGVGKGTY 45 (261)
T ss_pred EEEEECCCCCCHHHH
Confidence 467789999999996
No 496
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=83.43 E-value=0.44 Score=42.13 Aligned_cols=19 Identities=32% Similarity=0.420 Sum_probs=16.6
Q ss_pred CCCceEEEecccCCCccCC
Q 033696 93 NRIPATIITGFLGSGKNTG 111 (113)
Q Consensus 93 ~riPvTIiTGfLGsGKtTL 111 (113)
.+--++|+.|+.||||||+
T Consensus 367 ~~p~LVil~G~pGSGKST~ 385 (526)
T TIGR01663 367 APCEMVIAVGFPGAGKSHF 385 (526)
T ss_pred CCceEEEEECCCCCCHHHH
Confidence 4456899999999999997
No 497
>PRK15494 era GTPase Era; Provisional
Probab=83.42 E-value=0.36 Score=39.24 Aligned_cols=21 Identities=29% Similarity=0.232 Sum_probs=17.7
Q ss_pred CCCceEEEecccCCCccCCCC
Q 033696 93 NRIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 93 ~riPvTIiTGfLGsGKtTLLn 113 (113)
++..-++|.|..|+|||||+|
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin 70 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLN 70 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHH
Confidence 455578899999999999986
No 498
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=83.34 E-value=0.37 Score=43.31 Aligned_cols=20 Identities=30% Similarity=0.376 Sum_probs=17.7
Q ss_pred CCceEEEecccCCCccCCCC
Q 033696 94 RIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 94 riPvTIiTGfLGsGKtTLLn 113 (113)
..+-++|.|..|+|||||+|
T Consensus 445 ~~~~~~i~G~tGsGKS~l~~ 464 (800)
T PRK13898 445 DVGHTLIIGPTGAGKTVLMN 464 (800)
T ss_pred CCCEEEEECCCCCcHHHHHH
Confidence 36889999999999999864
No 499
>PRK10536 hypothetical protein; Provisional
Probab=83.22 E-value=0.5 Score=38.87 Aligned_cols=17 Identities=29% Similarity=0.180 Sum_probs=15.8
Q ss_pred CceEEEecccCCCccCC
Q 033696 95 IPATIITGFLGSGKNTG 111 (113)
Q Consensus 95 iPvTIiTGfLGsGKtTL 111 (113)
.++++++|.-|+|||+|
T Consensus 74 ~~lV~i~G~aGTGKT~L 90 (262)
T PRK10536 74 KQLIFATGEAGCGKTWI 90 (262)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 57999999999999987
No 500
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=83.21 E-value=0.37 Score=40.27 Aligned_cols=17 Identities=29% Similarity=0.286 Sum_probs=14.2
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
..+|-|-.||||+||||
T Consensus 34 FvtViGsNGAGKSTlln 50 (263)
T COG1101 34 FVTVIGSNGAGKSTLLN 50 (263)
T ss_pred eEEEEcCCCccHHHHHH
Confidence 34566999999999987
Done!