Query 033696
Match_columns 113
No_of_seqs 105 out of 107
Neff 2.8
Searched_HMMs 29240
Date Mon Mar 25 08:21:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033696.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033696hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wsm_A Hydrogenase expression/ 97.2 3.8E-05 1.3E-09 53.4 -0.7 21 93-113 28-48 (221)
2 2hf9_A Probable hydrogenase ni 97.0 9.1E-05 3.1E-09 51.6 -0.6 21 93-113 36-56 (226)
3 2www_A Methylmalonic aciduria 96.8 0.0002 6.9E-09 56.1 0.2 22 92-113 71-92 (349)
4 3lnc_A Guanylate kinase, GMP k 96.5 0.00045 1.5E-08 49.4 0.0 18 96-113 28-45 (231)
5 2ehv_A Hypothetical protein PH 96.4 0.00037 1.3E-08 48.8 -0.7 18 96-113 31-48 (251)
6 4eun_A Thermoresistant glucoki 96.4 0.00041 1.4E-08 48.7 -0.7 19 94-112 28-46 (200)
7 1znw_A Guanylate kinase, GMP k 96.3 0.00046 1.6E-08 48.9 -0.7 18 96-113 21-38 (207)
8 3pqc_A Probable GTP-binding pr 96.3 0.00083 2.8E-08 44.6 0.5 24 90-113 18-41 (195)
9 1svi_A GTP-binding protein YSX 96.2 0.00069 2.4E-08 45.5 -0.1 23 91-113 19-41 (195)
10 1htw_A HI0065; nucleotide-bind 96.2 0.00057 2E-08 48.5 -0.7 17 97-113 35-51 (158)
11 3kta_A Chromosome segregation 96.2 0.00071 2.4E-08 46.1 -0.2 16 97-112 28-43 (182)
12 4a74_A DNA repair and recombin 96.2 0.00056 1.9E-08 47.3 -0.8 17 97-113 27-43 (231)
13 2pcj_A ABC transporter, lipopr 96.1 0.00061 2.1E-08 50.2 -0.8 17 97-113 32-48 (224)
14 1pui_A ENGB, probable GTP-bind 96.1 0.0011 3.7E-08 45.3 0.4 21 93-113 24-44 (210)
15 3tif_A Uncharacterized ABC tra 96.1 0.0007 2.4E-08 50.3 -0.7 18 96-113 32-49 (235)
16 3c8u_A Fructokinase; YP_612366 96.1 0.00083 2.8E-08 47.5 -0.4 21 93-113 20-40 (208)
17 1ji0_A ABC transporter; ATP bi 96.0 0.00081 2.8E-08 50.0 -0.7 17 97-113 34-50 (240)
18 3b85_A Phosphate starvation-in 96.0 0.0011 3.7E-08 48.8 -0.0 17 97-113 24-40 (208)
19 2eyu_A Twitching motility prot 96.0 0.00084 2.9E-08 50.9 -0.7 18 96-113 26-43 (261)
20 1g6h_A High-affinity branched- 96.0 0.00089 3.1E-08 50.2 -0.7 17 97-113 35-51 (257)
21 3uie_A Adenylyl-sulfate kinase 95.9 0.0009 3.1E-08 46.9 -0.7 18 95-112 25-42 (200)
22 2cbz_A Multidrug resistance-as 95.9 0.00092 3.2E-08 49.7 -0.7 17 97-113 33-49 (237)
23 1mv5_A LMRA, multidrug resista 95.9 0.00095 3.2E-08 49.6 -0.7 17 97-113 30-46 (243)
24 1b0u_A Histidine permease; ABC 95.9 0.001 3.5E-08 50.3 -0.7 17 97-113 34-50 (262)
25 2pze_A Cystic fibrosis transme 95.9 0.001 3.5E-08 49.1 -0.7 17 97-113 36-52 (229)
26 2onk_A Molybdate/tungstate ABC 95.9 0.0011 3.6E-08 49.9 -0.7 18 96-113 25-42 (240)
27 3qf7_A RAD50; ABC-ATPase, ATPa 95.8 0.001 3.5E-08 52.4 -0.8 18 96-113 24-41 (365)
28 1sgw_A Putative ABC transporte 95.8 0.00096 3.3E-08 49.6 -1.0 17 97-113 37-53 (214)
29 2d2e_A SUFC protein; ABC-ATPas 95.8 0.0011 3.8E-08 49.5 -0.7 17 97-113 31-47 (250)
30 1z6g_A Guanylate kinase; struc 95.8 0.00098 3.4E-08 48.2 -1.0 17 97-113 25-41 (218)
31 2olj_A Amino acid ABC transpor 95.8 0.0011 3.9E-08 50.5 -0.7 17 97-113 52-68 (263)
32 1f2t_A RAD50 ABC-ATPase; DNA d 95.8 0.0014 4.7E-08 45.5 -0.2 17 96-112 24-40 (149)
33 2bbw_A Adenylate kinase 4, AK4 95.8 0.0013 4.6E-08 47.4 -0.3 18 95-112 27-44 (246)
34 2qi9_C Vitamin B12 import ATP- 95.8 0.0012 4E-08 50.0 -0.7 17 97-113 28-44 (249)
35 2yz2_A Putative ABC transporte 95.8 0.0012 4.1E-08 49.9 -0.7 17 97-113 35-51 (266)
36 2zu0_C Probable ATP-dependent 95.8 0.0012 4.1E-08 50.0 -0.7 17 97-113 48-64 (267)
37 2ff7_A Alpha-hemolysin translo 95.8 0.0012 4.2E-08 49.4 -0.7 17 97-113 37-53 (247)
38 1vpl_A ABC transporter, ATP-bi 95.8 0.0012 4.2E-08 50.0 -0.7 17 97-113 43-59 (256)
39 2ixe_A Antigen peptide transpo 95.7 0.0013 4.4E-08 50.1 -0.7 17 97-113 47-63 (271)
40 2ihy_A ABC transporter, ATP-bi 95.7 0.0013 4.5E-08 50.5 -0.7 17 97-113 49-65 (279)
41 4dhe_A Probable GTP-binding pr 95.7 0.00083 2.8E-08 46.3 -1.6 23 91-113 25-47 (223)
42 2qm8_A GTPase/ATPase; G protei 95.7 0.0015 5.2E-08 51.0 -0.4 22 92-113 52-73 (337)
43 3gfo_A Cobalt import ATP-bindi 95.7 0.0014 4.7E-08 50.5 -0.7 17 97-113 36-52 (275)
44 3p32_A Probable GTPase RV1496/ 95.7 0.0017 5.8E-08 50.4 -0.2 22 92-113 76-97 (355)
45 2w0m_A SSO2452; RECA, SSPF, un 95.7 0.0014 4.7E-08 44.9 -0.7 16 97-112 25-40 (235)
46 2nq2_C Hypothetical ABC transp 95.7 0.0014 4.9E-08 49.4 -0.6 17 97-113 33-49 (253)
47 2ghi_A Transport protein; mult 95.6 0.0014 4.9E-08 49.4 -0.7 17 97-113 48-64 (260)
48 4g1u_C Hemin import ATP-bindin 95.6 0.0015 5E-08 49.8 -0.7 17 97-113 39-55 (266)
49 3jvv_A Twitching mobility prot 95.6 0.0015 5.1E-08 52.1 -0.7 17 97-113 125-141 (356)
50 3vaa_A Shikimate kinase, SK; s 95.5 0.0033 1.1E-07 44.0 0.7 19 94-112 24-42 (199)
51 2jeo_A Uridine-cytidine kinase 95.5 0.0018 6.3E-08 47.0 -0.7 18 96-113 26-43 (245)
52 1p9r_A General secretion pathw 95.4 0.0021 7.1E-08 52.6 -0.7 18 96-113 168-185 (418)
53 2qt1_A Nicotinamide riboside k 95.4 0.0026 8.9E-08 44.4 -0.1 20 93-112 19-38 (207)
54 2pjz_A Hypothetical protein ST 95.4 0.0021 7.1E-08 49.1 -0.7 17 97-113 32-48 (263)
55 3ec2_A DNA replication protein 95.3 0.002 6.9E-08 44.0 -0.8 17 96-112 39-55 (180)
56 3qks_A DNA double-strand break 95.3 0.0027 9.1E-08 45.8 -0.2 17 96-112 24-40 (203)
57 1oix_A RAS-related protein RAB 95.3 0.0019 6.4E-08 44.6 -1.0 21 93-113 27-47 (191)
58 2gza_A Type IV secretion syste 95.3 0.002 6.7E-08 50.7 -1.1 17 97-113 177-193 (361)
59 4aby_A DNA repair protein RECN 95.3 0.0013 4.6E-08 50.5 -2.0 17 97-113 62-78 (415)
60 2qpt_A EH domain-containing pr 95.3 0.0034 1.2E-07 52.5 0.2 23 91-113 61-83 (550)
61 2ewv_A Twitching motility prot 95.2 0.0025 8.6E-08 50.5 -0.6 18 96-113 137-154 (372)
62 2pt7_A CAG-ALFA; ATPase, prote 95.2 0.0021 7.2E-08 50.2 -1.1 17 97-113 173-189 (330)
63 1rz3_A Hypothetical protein rb 95.2 0.0023 7.9E-08 45.1 -0.8 20 93-112 20-39 (201)
64 1e69_A Chromosome segregation 95.2 0.0043 1.5E-07 47.3 0.5 16 97-112 26-41 (322)
65 2ged_A SR-beta, signal recogni 95.1 0.0033 1.1E-07 42.2 -0.2 21 93-113 46-66 (193)
66 1cr0_A DNA primase/helicase; R 95.1 0.0027 9.4E-08 46.9 -0.8 16 97-112 37-52 (296)
67 4e22_A Cytidylate kinase; P-lo 95.0 0.0036 1.2E-07 46.1 -0.2 19 94-112 26-44 (252)
68 2bbs_A Cystic fibrosis transme 95.0 0.0028 9.7E-08 49.1 -0.8 17 97-113 66-82 (290)
69 3auy_A DNA double-strand break 95.0 0.0035 1.2E-07 48.8 -0.4 17 96-112 26-42 (371)
70 2p67_A LAO/AO transport system 95.0 0.0032 1.1E-07 48.7 -0.6 22 92-113 53-74 (341)
71 2kjq_A DNAA-related protein; s 94.9 0.0046 1.6E-07 42.8 0.0 18 95-112 36-53 (149)
72 2oap_1 GSPE-2, type II secreti 94.9 0.003 1E-07 52.7 -1.1 17 97-113 262-278 (511)
73 1p5z_B DCK, deoxycytidine kina 94.9 0.0049 1.7E-07 45.0 0.2 21 92-112 21-41 (263)
74 3l0i_B RAS-related protein RAB 94.9 0.014 4.6E-07 39.9 2.3 21 93-113 31-51 (199)
75 1z47_A CYSA, putative ABC-tran 94.8 0.0038 1.3E-07 50.3 -0.7 17 97-113 43-59 (355)
76 2qtf_A Protein HFLX, GTP-bindi 94.8 0.0043 1.5E-07 49.3 -0.4 23 91-113 175-197 (364)
77 3qkt_A DNA double-strand break 94.8 0.0047 1.6E-07 47.5 -0.2 17 96-112 24-40 (339)
78 1n0w_A DNA repair protein RAD5 94.8 0.005 1.7E-07 42.9 -0.1 16 97-112 26-41 (243)
79 2cvh_A DNA repair and recombin 94.7 0.005 1.7E-07 42.3 -0.1 17 96-112 21-37 (220)
80 1uj2_A Uridine-cytidine kinase 94.7 0.0069 2.4E-07 44.1 0.5 19 93-111 20-38 (252)
81 1g29_1 MALK, maltose transport 94.7 0.0043 1.5E-07 50.0 -0.7 17 97-113 31-47 (372)
82 2oil_A CATX-8, RAS-related pro 94.6 0.004 1.4E-07 42.0 -0.9 21 93-113 23-43 (193)
83 2yyz_A Sugar ABC transporter, 94.6 0.0046 1.6E-07 49.8 -0.7 17 97-113 31-47 (359)
84 2it1_A 362AA long hypothetical 94.6 0.0046 1.6E-07 49.8 -0.7 17 97-113 31-47 (362)
85 1jwy_B Dynamin A GTPase domain 94.6 0.0057 1.9E-07 45.0 -0.2 22 92-113 21-42 (315)
86 1gvn_B Zeta; postsegregational 94.5 0.0083 2.8E-07 45.6 0.7 16 96-111 34-49 (287)
87 3fvq_A Fe(3+) IONS import ATP- 94.5 0.0046 1.6E-07 50.1 -0.8 18 96-113 31-48 (359)
88 1v43_A Sugar-binding transport 94.5 0.0048 1.7E-07 49.9 -0.7 17 97-113 39-55 (372)
89 1in4_A RUVB, holliday junction 94.5 0.0056 1.9E-07 46.7 -0.3 19 94-112 50-68 (334)
90 2p5t_B PEZT; postsegregational 94.5 0.0077 2.6E-07 44.1 0.3 16 96-111 33-48 (253)
91 1sq5_A Pantothenate kinase; P- 94.4 0.0049 1.7E-07 47.0 -0.8 18 96-113 81-98 (308)
92 2vp4_A Deoxynucleoside kinase; 94.4 0.0051 1.8E-07 44.3 -0.7 18 96-113 21-38 (230)
93 2cdn_A Adenylate kinase; phosp 94.4 0.0083 2.8E-07 41.6 0.4 16 96-111 21-36 (201)
94 2e87_A Hypothetical protein PH 94.3 0.0071 2.4E-07 46.7 -0.1 22 92-113 164-185 (357)
95 3aez_A Pantothenate kinase; tr 94.3 0.0056 1.9E-07 47.7 -0.7 19 95-113 90-108 (312)
96 3d31_A Sulfate/molybdate ABC t 94.3 0.0037 1.3E-07 50.0 -1.8 17 97-113 28-44 (348)
97 3lxx_A GTPase IMAP family memb 94.3 0.0052 1.8E-07 43.9 -0.9 22 92-113 26-47 (239)
98 1oxx_K GLCV, glucose, ABC tran 94.2 0.0033 1.1E-07 50.2 -2.2 17 97-113 33-49 (353)
99 1nlf_A Regulatory protein REPA 94.2 0.0074 2.5E-07 44.4 -0.2 17 96-112 31-47 (279)
100 2yv5_A YJEQ protein; hydrolase 94.2 0.0062 2.1E-07 46.6 -0.7 17 97-113 167-183 (302)
101 1sxj_E Activator 1 40 kDa subu 94.2 0.0076 2.6E-07 44.7 -0.2 21 92-112 33-53 (354)
102 2h17_A ADP-ribosylation factor 94.2 0.0054 1.9E-07 41.2 -0.9 26 88-113 14-39 (181)
103 3umf_A Adenylate kinase; rossm 94.2 0.015 5.2E-07 43.5 1.4 23 89-111 23-45 (217)
104 1fnn_A CDC6P, cell division co 94.2 0.0069 2.4E-07 44.8 -0.5 19 94-112 43-61 (389)
105 3rlf_A Maltose/maltodextrin im 94.2 0.0065 2.2E-07 49.6 -0.7 17 97-113 31-47 (381)
106 3szr_A Interferon-induced GTP- 94.1 0.0059 2E-07 51.5 -1.1 22 92-113 42-63 (608)
107 1m7g_A Adenylylsulfate kinase; 94.0 0.011 3.7E-07 41.7 0.4 17 96-112 26-42 (211)
108 1wb9_A DNA mismatch repair pro 94.0 0.0073 2.5E-07 53.3 -0.7 18 96-113 608-625 (800)
109 1ewq_A DNA mismatch repair pro 94.0 0.0078 2.7E-07 52.9 -0.6 18 96-113 577-594 (765)
110 1w1w_A Structural maintenance 93.9 0.008 2.7E-07 47.4 -0.6 18 95-112 26-43 (430)
111 3tui_C Methionine import ATP-b 93.9 0.0078 2.7E-07 49.0 -0.7 18 96-113 55-72 (366)
112 3ux8_A Excinuclease ABC, A sub 93.9 0.01 3.6E-07 49.8 0.0 17 97-113 350-366 (670)
113 3t34_A Dynamin-related protein 93.9 0.0094 3.2E-07 45.8 -0.3 22 92-113 31-52 (360)
114 3b9q_A Chloroplast SRP recepto 93.8 0.0081 2.8E-07 46.5 -0.7 16 97-112 102-117 (302)
115 2yc2_C IFT27, small RAB-relate 93.8 0.015 5.1E-07 39.0 0.7 18 96-113 21-38 (208)
116 3nwj_A ATSK2; P loop, shikimat 93.8 0.0078 2.7E-07 45.7 -0.9 18 95-112 48-65 (250)
117 1njg_A DNA polymerase III subu 93.8 0.011 3.8E-07 39.3 -0.0 17 96-112 46-62 (250)
118 2dr3_A UPF0273 protein PH0284; 93.7 0.013 4.4E-07 40.8 0.2 16 97-112 25-40 (247)
119 2aka_B Dynamin-1; fusion prote 93.7 0.012 4E-07 42.7 -0.0 23 91-113 22-44 (299)
120 1rj9_A FTSY, signal recognitio 93.7 0.015 5.1E-07 45.2 0.5 19 95-113 102-120 (304)
121 1z06_A RAS-related protein RAB 93.7 0.008 2.7E-07 40.5 -0.9 22 92-113 17-38 (189)
122 1u0l_A Probable GTPase ENGC; p 93.6 0.0094 3.2E-07 45.4 -0.7 17 97-113 171-187 (301)
123 2npi_A Protein CLP1; CLP1-PCF1 93.6 0.0086 3E-07 49.4 -1.0 20 94-113 137-156 (460)
124 3nh6_A ATP-binding cassette SU 93.5 0.0064 2.2E-07 47.8 -1.8 17 97-113 82-98 (306)
125 3thx_A DNA mismatch repair pro 93.5 0.01 3.5E-07 53.5 -0.7 18 96-113 663-680 (934)
126 3cbq_A GTP-binding protein REM 93.5 0.0088 3E-07 41.4 -0.9 23 91-113 19-41 (195)
127 1ixz_A ATP-dependent metallopr 93.5 0.009 3.1E-07 42.9 -0.9 15 98-112 52-66 (254)
128 2fna_A Conserved hypothetical 93.5 0.0099 3.4E-07 43.0 -0.7 17 96-112 31-47 (357)
129 2v9p_A Replication protein E1; 93.5 0.01 3.5E-07 46.8 -0.6 17 97-113 128-144 (305)
130 3thx_B DNA mismatch repair pro 93.4 0.0074 2.5E-07 54.3 -1.8 18 96-113 674-691 (918)
131 3gd7_A Fusion complex of cysti 93.4 0.01 3.6E-07 48.2 -0.8 18 96-113 48-65 (390)
132 1jbk_A CLPB protein; beta barr 93.4 0.011 3.7E-07 38.4 -0.6 17 96-112 44-60 (195)
133 3con_A GTPase NRAS; structural 93.3 0.0082 2.8E-07 40.2 -1.3 18 96-113 22-39 (190)
134 2o5v_A DNA replication and rep 93.3 0.011 3.9E-07 47.3 -0.7 16 97-112 28-43 (359)
135 3e70_C DPA, signal recognition 93.3 0.012 4E-07 46.5 -0.7 18 95-112 129-146 (328)
136 1yqt_A RNAse L inhibitor; ATP- 93.3 0.012 4E-07 49.1 -0.7 18 96-113 48-65 (538)
137 2o8b_B DNA mismatch repair pro 93.2 0.012 4.2E-07 53.2 -0.7 18 96-113 790-807 (1022)
138 1tq4_A IIGP1, interferon-induc 93.2 0.011 3.8E-07 48.5 -0.9 20 94-113 68-87 (413)
139 4a82_A Cystic fibrosis transme 93.2 0.016 5.6E-07 48.0 0.0 17 97-113 369-385 (578)
140 3bos_A Putative DNA replicatio 93.2 0.016 5.6E-07 39.5 0.0 19 94-112 51-69 (242)
141 1tf7_A KAIC; homohexamer, hexa 93.0 0.013 4.4E-07 47.8 -0.8 17 97-113 41-57 (525)
142 2f6r_A COA synthase, bifunctio 93.0 0.023 7.7E-07 42.8 0.6 19 94-112 74-92 (281)
143 1lw7_A Transcriptional regulat 93.0 0.011 3.7E-07 45.7 -1.2 17 97-113 172-188 (365)
144 2rcn_A Probable GTPase ENGC; Y 93.0 0.014 4.7E-07 47.3 -0.7 17 97-113 217-233 (358)
145 2yl4_A ATP-binding cassette SU 93.0 0.018 6.1E-07 47.8 -0.0 17 97-113 372-388 (595)
146 2qu8_A Putative nucleolar GTP- 93.0 0.016 5.5E-07 40.8 -0.3 22 92-113 26-47 (228)
147 1odf_A YGR205W, hypothetical 3 92.9 0.019 6.5E-07 44.2 0.1 20 93-112 29-48 (290)
148 1yqt_A RNAse L inhibitor; ATP- 92.9 0.014 4.9E-07 48.5 -0.7 17 97-113 314-330 (538)
149 3b5x_A Lipid A export ATP-bind 92.9 0.017 5.8E-07 47.8 -0.3 17 97-113 371-387 (582)
150 3tlx_A Adenylate kinase 2; str 92.8 0.025 8.5E-07 41.4 0.6 16 96-111 30-45 (243)
151 2qen_A Walker-type ATPase; unk 92.8 0.015 5.2E-07 42.0 -0.6 17 96-112 32-48 (350)
152 1pzn_A RAD51, DNA repair and r 92.8 0.014 4.8E-07 45.7 -0.8 17 96-112 132-148 (349)
153 3dz8_A RAS-related protein RAB 92.8 0.007 2.4E-07 41.0 -2.3 21 93-113 21-41 (191)
154 3cr8_A Sulfate adenylyltranfer 92.8 0.0097 3.3E-07 50.4 -1.9 17 96-112 370-386 (552)
155 2chg_A Replication factor C sm 92.8 0.022 7.6E-07 37.7 0.2 19 94-112 37-55 (226)
156 2h57_A ADP-ribosylation factor 92.7 0.014 4.8E-07 39.3 -0.8 22 92-113 18-39 (190)
157 3bk7_A ABC transporter ATP-bin 92.7 0.016 5.5E-07 49.3 -0.7 17 97-113 384-400 (607)
158 2x8a_A Nuclear valosin-contain 92.7 0.014 4.8E-07 43.9 -0.9 15 98-112 47-61 (274)
159 3llu_A RAS-related GTP-binding 92.7 0.016 5.4E-07 39.6 -0.6 26 88-113 13-38 (196)
160 3bk7_A ABC transporter ATP-bin 92.7 0.016 5.5E-07 49.3 -0.7 18 96-113 118-135 (607)
161 1iy2_A ATP-dependent metallopr 92.6 0.015 5E-07 42.7 -0.9 15 98-112 76-90 (278)
162 4dcu_A GTP-binding protein ENG 92.6 0.018 6.3E-07 46.0 -0.4 26 88-113 16-41 (456)
163 1udx_A The GTP-binding protein 92.6 0.016 5.4E-07 47.4 -0.9 21 93-113 155-175 (416)
164 2og2_A Putative signal recogni 92.6 0.017 5.7E-07 46.5 -0.7 16 97-112 159-174 (359)
165 2f7s_A C25KG, RAS-related prot 92.5 0.014 4.8E-07 40.1 -1.0 21 93-113 23-43 (217)
166 3j16_B RLI1P; ribosome recycli 92.5 0.017 5.9E-07 49.3 -0.7 17 97-113 105-121 (608)
167 3cph_A RAS-related protein SEC 92.5 0.016 5.6E-07 39.2 -0.7 21 93-113 18-38 (213)
168 3qf4_B Uncharacterized ABC tra 92.5 0.022 7.6E-07 47.5 -0.0 17 97-113 383-399 (598)
169 3ozx_A RNAse L inhibitor; ATP 92.5 0.018 6E-07 48.3 -0.7 17 97-113 27-43 (538)
170 3oes_A GTPase rhebl1; small GT 92.5 0.014 4.9E-07 39.8 -1.0 21 93-113 22-42 (201)
171 3zvl_A Bifunctional polynucleo 92.5 0.055 1.9E-06 43.1 2.2 18 94-111 257-274 (416)
172 3ozx_A RNAse L inhibitor; ATP 92.5 0.018 6.1E-07 48.3 -0.7 17 97-113 296-312 (538)
173 2qag_B Septin-6, protein NEDD5 92.4 0.021 7E-07 47.5 -0.3 21 93-113 40-60 (427)
174 2fg5_A RAB-22B, RAS-related pr 92.4 0.013 4.4E-07 39.8 -1.4 20 94-113 22-41 (192)
175 1sxj_C Activator 1 40 kDa subu 92.3 0.022 7.5E-07 43.0 -0.3 20 93-112 44-63 (340)
176 3b60_A Lipid A export ATP-bind 92.3 0.018 6.2E-07 47.6 -0.8 17 97-113 371-387 (582)
177 3euj_A Chromosome partition pr 92.3 0.02 6.7E-07 48.2 -0.7 18 96-113 30-47 (483)
178 2il1_A RAB12; G-protein, GDP, 92.3 0.016 5.5E-07 39.5 -1.0 19 95-113 26-44 (192)
179 1t9h_A YLOQ, probable GTPase E 92.2 0.009 3.1E-07 47.1 -2.6 17 97-113 175-191 (307)
180 2a5j_A RAS-related protein RAB 92.2 0.017 6E-07 39.0 -0.9 19 95-113 21-39 (191)
181 2zts_A Putative uncharacterize 92.2 0.031 1.1E-06 38.8 0.4 15 97-111 32-46 (251)
182 4ad8_A DNA repair protein RECN 92.2 0.015 5.1E-07 47.3 -1.5 16 97-112 62-77 (517)
183 2qby_A CDC6 homolog 1, cell di 92.1 0.022 7.5E-07 41.6 -0.5 19 94-112 44-62 (386)
184 1zd9_A ADP-ribosylation factor 92.1 0.018 6.2E-07 38.9 -0.9 20 94-113 21-40 (188)
185 2xtp_A GTPase IMAP family memb 92.1 0.02 7E-07 41.1 -0.7 21 93-113 20-40 (260)
186 3j16_B RLI1P; ribosome recycli 92.1 0.021 7.3E-07 48.8 -0.7 18 96-113 379-396 (608)
187 2o52_A RAS-related protein RAB 92.0 0.018 6.1E-07 39.6 -1.0 20 94-113 24-43 (200)
188 2atv_A RERG, RAS-like estrogen 92.0 0.019 6.4E-07 39.0 -0.9 18 96-113 29-46 (196)
189 2gf9_A RAS-related protein RAB 92.0 0.022 7.5E-07 38.3 -0.6 20 94-113 21-40 (189)
190 3tqc_A Pantothenate kinase; bi 92.0 0.022 7.5E-07 45.2 -0.7 16 97-112 94-109 (321)
191 3ux8_A Excinuclease ABC, A sub 91.9 0.028 9.6E-07 47.2 -0.1 17 96-112 45-61 (670)
192 3th5_A RAS-related C3 botulinu 91.2 0.029 1E-06 38.2 0.0 19 95-113 30-48 (204)
193 4eaq_A DTMP kinase, thymidylat 91.8 0.034 1.2E-06 40.8 0.2 19 94-112 25-43 (229)
194 3reg_A RHO-like small GTPase; 91.7 0.021 7.3E-07 38.5 -0.9 20 94-113 22-41 (194)
195 2yhs_A FTSY, cell division pro 91.6 0.026 8.7E-07 48.3 -0.7 17 97-113 295-311 (503)
196 3ihw_A Centg3; RAS, centaurin, 91.6 0.022 7.5E-07 38.9 -0.9 19 95-113 20-38 (184)
197 3a8t_A Adenylate isopentenyltr 91.6 0.044 1.5E-06 44.5 0.7 18 94-111 39-56 (339)
198 2w58_A DNAI, primosome compone 91.5 0.035 1.2E-06 38.2 0.0 17 96-112 55-71 (202)
199 3qf4_A ABC transporter, ATP-bi 91.4 0.028 9.6E-07 46.9 -0.6 17 97-113 371-387 (587)
200 2p65_A Hypothetical protein PF 91.4 0.046 1.6E-06 35.7 0.5 18 95-112 43-60 (187)
201 2g3y_A GTP-binding protein GEM 91.3 0.027 9.1E-07 40.8 -0.8 20 94-113 36-55 (211)
202 1lv7_A FTSH; alpha/beta domain 91.3 0.025 8.5E-07 40.6 -0.9 15 98-112 48-62 (257)
203 2x77_A ADP-ribosylation factor 91.3 0.022 7.6E-07 38.1 -1.1 20 94-113 21-40 (189)
204 2px0_A Flagellar biosynthesis 91.2 0.035 1.2E-06 42.8 -0.2 18 95-112 105-122 (296)
205 1vma_A Cell division protein F 91.2 0.038 1.3E-06 43.2 -0.1 17 96-112 105-121 (306)
206 1m2o_B GTP-binding protein SAR 91.1 0.025 8.7E-07 38.7 -1.0 18 96-113 24-41 (190)
207 1f6b_A SAR1; gtpases, N-termin 91.1 0.025 8.4E-07 39.1 -1.1 17 97-113 27-43 (198)
208 1tf7_A KAIC; homohexamer, hexa 91.1 0.03 1E-06 45.7 -0.8 16 97-112 283-298 (525)
209 3c5c_A RAS-like protein 12; GD 91.1 0.027 9.3E-07 38.3 -0.9 17 97-113 23-39 (187)
210 2p5s_A RAS and EF-hand domain 91.1 0.03 1E-06 38.2 -0.7 21 93-113 26-46 (199)
211 2q3h_A RAS homolog gene family 91.0 0.03 1E-06 37.8 -0.7 21 93-113 18-38 (201)
212 2fv8_A H6, RHO-related GTP-bin 91.0 0.026 9E-07 38.8 -1.0 17 97-113 27-43 (207)
213 2ew1_A RAS-related protein RAB 91.0 0.025 8.6E-07 39.7 -1.2 21 93-113 24-44 (201)
214 2vf7_A UVRA2, excinuclease ABC 91.0 0.053 1.8E-06 48.5 0.6 17 97-113 525-541 (842)
215 3lda_A DNA repair protein RAD5 90.9 0.04 1.4E-06 44.7 -0.2 16 97-112 180-195 (400)
216 3vkw_A Replicase large subunit 90.9 0.051 1.7E-06 45.7 0.4 24 89-112 155-178 (446)
217 2b6h_A ADP-ribosylation factor 90.8 0.028 9.6E-07 38.5 -1.0 19 95-113 29-47 (192)
218 2v1u_A Cell division control p 90.7 0.039 1.3E-06 40.5 -0.4 20 93-112 42-61 (387)
219 1sxj_D Activator 1 41 kDa subu 90.7 0.042 1.4E-06 40.3 -0.2 19 94-112 57-75 (353)
220 3llm_A ATP-dependent RNA helic 90.7 0.045 1.5E-06 39.2 -0.1 17 96-112 77-93 (235)
221 1qhl_A Protein (cell division 90.5 0.0055 1.9E-07 46.2 -5.2 18 96-113 28-45 (227)
222 3qq5_A Small GTP-binding prote 90.5 0.16 5.5E-06 41.5 3.1 23 91-113 30-52 (423)
223 1l8q_A Chromosomal replication 90.4 0.044 1.5E-06 40.7 -0.3 19 94-112 36-54 (324)
224 2gco_A H9, RHO-related GTP-bin 90.3 0.033 1.1E-06 38.2 -1.0 17 97-113 27-43 (201)
225 2j1l_A RHO-related GTP-binding 90.2 0.035 1.2E-06 38.7 -1.0 17 97-113 36-52 (214)
226 1svm_A Large T antigen; AAA+ f 90.1 0.043 1.5E-06 44.3 -0.7 16 97-112 171-186 (377)
227 3lxw_A GTPase IMAP family memb 90.1 0.039 1.3E-06 40.5 -0.9 17 97-113 23-39 (247)
228 2iw3_A Elongation factor 3A; a 90.0 0.045 1.5E-06 50.1 -0.7 17 97-113 463-479 (986)
229 4gzl_A RAS-related C3 botulinu 89.8 0.038 1.3E-06 38.2 -1.0 17 96-112 31-47 (204)
230 1gwn_A RHO-related GTP-binding 89.8 0.039 1.3E-06 38.7 -1.0 18 96-113 29-46 (205)
231 2hup_A RAS-related protein RAB 89.8 0.035 1.2E-06 38.3 -1.3 21 93-113 27-47 (201)
232 2ygr_A Uvrabc system protein A 89.7 0.064 2.2E-06 49.3 0.0 17 97-113 670-686 (993)
233 2x2e_A Dynamin-1; nitration, h 89.6 0.057 2E-06 41.6 -0.3 22 92-113 28-49 (353)
234 1lnz_A SPO0B-associated GTP-bi 89.6 0.048 1.7E-06 43.1 -0.7 20 94-113 157-176 (342)
235 4ag6_A VIRB4 ATPase, type IV s 89.4 0.048 1.6E-06 42.1 -0.9 20 94-113 34-53 (392)
236 2obl_A ESCN; ATPase, hydrolase 89.4 0.05 1.7E-06 43.1 -0.8 17 97-113 73-89 (347)
237 3e1s_A Exodeoxyribonuclease V, 89.3 0.055 1.9E-06 45.5 -0.6 17 96-112 205-221 (574)
238 2axn_A 6-phosphofructo-2-kinas 89.3 0.08 2.7E-06 44.0 0.4 16 96-111 36-51 (520)
239 2ga8_A Hypothetical 39.9 kDa p 89.3 0.099 3.4E-06 42.9 0.9 20 93-112 22-41 (359)
240 2r6f_A Excinuclease ABC subuni 89.0 0.064 2.2E-06 49.2 -0.5 17 97-113 652-668 (972)
241 2dpy_A FLII, flagellum-specifi 89.0 0.055 1.9E-06 44.2 -0.8 17 97-113 159-175 (438)
242 1bif_A 6-phosphofructo-2-kinas 88.9 0.09 3.1E-06 42.2 0.4 16 97-112 41-56 (469)
243 1zu4_A FTSY; GTPase, signal re 88.9 0.076 2.6E-06 41.5 -0.1 19 94-112 104-122 (320)
244 2iw3_A Elongation factor 3A; a 88.8 0.041 1.4E-06 50.3 -1.9 17 97-113 701-717 (986)
245 1mky_A Probable GTP-binding pr 88.8 0.076 2.6E-06 42.2 -0.1 21 93-113 178-198 (439)
246 3hr8_A Protein RECA; alpha and 88.7 0.074 2.5E-06 42.8 -0.2 16 97-112 63-78 (356)
247 2qag_C Septin-7; cell cycle, c 88.7 0.054 1.8E-06 44.3 -1.1 15 99-113 35-49 (418)
248 2zr9_A Protein RECA, recombina 88.6 0.077 2.6E-06 41.8 -0.2 17 96-112 62-78 (349)
249 2qby_B CDC6 homolog 3, cell di 88.5 0.085 2.9E-06 39.1 -0.0 18 95-112 45-62 (384)
250 3upu_A ATP-dependent DNA helic 88.4 0.087 3E-06 42.0 -0.0 17 96-112 46-62 (459)
251 1v5w_A DMC1, meiotic recombina 88.3 0.085 2.9E-06 40.9 -0.2 16 97-112 124-139 (343)
252 3q3j_B RHO-related GTP-binding 88.3 0.067 2.3E-06 37.4 -0.7 19 95-113 27-45 (214)
253 1w5s_A Origin recognition comp 88.3 0.057 1.9E-06 40.3 -1.1 18 95-112 50-69 (412)
254 4fcw_A Chaperone protein CLPB; 88.0 0.16 5.4E-06 36.8 1.2 20 93-112 45-64 (311)
255 2chq_A Replication factor C sm 87.8 0.15 5E-06 36.6 0.9 20 93-112 36-55 (319)
256 3kl4_A SRP54, signal recogniti 87.8 0.12 4.2E-06 42.7 0.5 19 94-112 96-114 (433)
257 1iqp_A RFCS; clamp loader, ext 87.8 0.15 5.1E-06 36.7 0.9 19 94-112 45-63 (327)
258 1g8f_A Sulfate adenylyltransfe 87.7 0.11 3.8E-06 43.9 0.2 19 93-111 393-411 (511)
259 3def_A T7I23.11 protein; chlor 87.6 0.069 2.4E-06 39.1 -1.0 20 94-113 35-54 (262)
260 2r6a_A DNAB helicase, replicat 87.5 0.1 3.5E-06 41.7 -0.1 16 97-112 205-220 (454)
261 1h65_A Chloroplast outer envel 87.5 0.082 2.8E-06 38.7 -0.6 20 94-113 38-57 (270)
262 3syl_A Protein CBBX; photosynt 87.3 0.19 6.6E-06 36.4 1.3 20 93-112 65-84 (309)
263 2qag_A Septin-2, protein NEDD5 87.3 0.073 2.5E-06 41.8 -1.1 16 98-113 40-55 (361)
264 1sxj_B Activator 1 37 kDa subu 87.2 0.16 5.3E-06 36.5 0.7 20 93-112 40-59 (323)
265 2i1q_A DNA repair and recombin 87.2 0.13 4.3E-06 38.7 0.2 17 96-112 99-115 (322)
266 1w36_D RECD, exodeoxyribonucle 87.2 0.11 3.9E-06 43.5 -0.0 18 95-112 164-181 (608)
267 3bh0_A DNAB-like replicative h 87.2 0.13 4.6E-06 39.2 0.4 17 96-112 69-85 (315)
268 1m8p_A Sulfate adenylyltransfe 87.1 0.18 6E-06 42.7 1.0 18 94-111 395-412 (573)
269 2j37_W Signal recognition part 86.9 0.14 4.9E-06 43.0 0.4 21 93-113 99-119 (504)
270 3b9p_A CG5977-PA, isoform A; A 86.7 0.14 4.7E-06 37.2 0.2 17 96-112 55-71 (297)
271 1z6t_A APAF-1, apoptotic prote 86.7 0.17 5.8E-06 40.4 0.7 20 93-112 145-164 (591)
272 4b3f_X DNA-binding protein smu 86.7 0.13 4.4E-06 42.9 -0.0 17 95-111 205-221 (646)
273 2z43_A DNA repair and recombin 86.6 0.14 4.9E-06 39.0 0.2 16 97-112 109-124 (324)
274 2qz4_A Paraplegin; AAA+, SPG7, 86.5 0.16 5.6E-06 35.7 0.5 17 96-112 40-56 (262)
275 3pih_A Uvrabc system protein A 86.5 0.13 4.4E-06 46.5 -0.1 16 97-112 612-627 (916)
276 3h4m_A Proteasome-activating n 86.2 0.15 5.2E-06 36.7 0.2 17 96-112 52-68 (285)
277 3pfi_A Holliday junction ATP-d 86.2 0.2 6.7E-06 37.1 0.8 19 94-112 54-72 (338)
278 3dm5_A SRP54, signal recogniti 85.9 0.17 5.9E-06 42.2 0.4 19 94-112 99-117 (443)
279 3v9p_A DTMP kinase, thymidylat 85.9 0.14 4.7E-06 38.5 -0.2 19 94-112 24-42 (227)
280 2qmh_A HPR kinase/phosphorylas 85.8 0.2 6.7E-06 38.6 0.6 15 97-111 36-50 (205)
281 3m6a_A ATP-dependent protease 85.7 0.14 4.8E-06 42.4 -0.2 19 94-112 107-125 (543)
282 1ni3_A YCHF GTPase, YCHF GTP-b 85.7 0.11 3.9E-06 42.2 -0.8 20 94-113 19-38 (392)
283 1ls1_A Signal recognition part 85.6 0.15 5E-06 39.0 -0.2 16 97-112 100-115 (295)
284 3pvs_A Replication-associated 85.5 0.23 7.7E-06 40.4 0.9 20 93-112 48-67 (447)
285 2z4s_A Chromosomal replication 85.4 0.12 4E-06 41.5 -0.8 18 95-112 130-147 (440)
286 1x6v_B Bifunctional 3'-phospho 85.3 0.19 6.5E-06 43.7 0.4 16 96-111 53-68 (630)
287 1j8m_F SRP54, signal recogniti 85.1 0.17 5.7E-06 39.0 -0.0 18 95-112 98-115 (297)
288 1jr3_A DNA polymerase III subu 85.1 0.17 5.9E-06 37.3 0.0 17 96-112 39-55 (373)
289 3uk6_A RUVB-like 2; hexameric 85.0 0.25 8.5E-06 36.8 0.8 16 97-112 72-87 (368)
290 2wkq_A NPH1-1, RAS-related C3 84.8 0.12 4E-06 37.5 -1.0 20 94-113 154-173 (332)
291 3cf0_A Transitional endoplasmi 84.6 0.2 6.9E-06 37.5 0.2 16 97-112 51-66 (301)
292 2j9r_A Thymidine kinase; TK1, 84.6 0.18 6.1E-06 38.5 -0.1 17 96-112 29-45 (214)
293 2v3c_C SRP54, signal recogniti 84.5 0.21 7.1E-06 40.8 0.2 19 94-112 98-116 (432)
294 3ld9_A DTMP kinase, thymidylat 84.5 0.14 4.9E-06 38.4 -0.7 18 95-112 21-38 (223)
295 1d2n_A N-ethylmaleimide-sensit 84.4 0.25 8.5E-06 35.7 0.6 20 93-112 62-81 (272)
296 2gk6_A Regulator of nonsense t 84.3 0.19 6.6E-06 42.0 -0.0 18 95-112 195-212 (624)
297 3n70_A Transport activator; si 84.1 0.22 7.4E-06 33.3 0.2 18 93-111 23-40 (145)
298 3lv8_A DTMP kinase, thymidylat 84.1 0.14 4.9E-06 38.6 -0.8 16 97-112 29-44 (236)
299 1u94_A RECA protein, recombina 84.0 0.24 8.1E-06 39.4 0.4 16 96-111 64-79 (356)
300 3o47_A ADP-ribosylation factor 83.9 0.2 6.9E-06 38.4 -0.1 17 97-113 167-183 (329)
301 3e2i_A Thymidine kinase; Zn-bi 83.9 0.19 6.4E-06 38.9 -0.3 17 95-111 28-44 (219)
302 3geh_A MNME, tRNA modification 83.8 0.14 4.8E-06 42.1 -1.0 16 98-113 227-242 (462)
303 1ofh_A ATP-dependent HSL prote 83.5 0.24 8.1E-06 35.5 0.2 17 96-112 51-67 (310)
304 3cnl_A YLQF, putative uncharac 83.4 0.15 5E-06 38.5 -1.0 18 96-113 100-117 (262)
305 2q6t_A DNAB replication FORK h 83.1 0.26 8.8E-06 39.3 0.2 17 96-112 201-217 (444)
306 3gee_A MNME, tRNA modification 83.0 0.17 5.7E-06 41.8 -0.9 16 98-113 236-251 (476)
307 2vf7_A UVRA2, excinuclease ABC 83.0 0.27 9.3E-06 44.0 0.4 16 97-112 38-53 (842)
308 3t15_A Ribulose bisphosphate c 82.8 0.37 1.3E-05 36.2 1.0 19 93-111 33-52 (293)
309 1hqc_A RUVB; extended AAA-ATPa 82.7 0.25 8.6E-06 35.9 0.0 17 96-112 39-55 (324)
310 1tue_A Replication protein E1; 82.7 0.29 9.9E-06 37.8 0.4 18 94-111 54-74 (212)
311 3g5u_A MCG1178, multidrug resi 82.4 0.21 7.1E-06 45.7 -0.6 17 97-113 418-434 (1284)
312 3co5_A Putative two-component 82.4 0.25 8.5E-06 33.0 -0.1 17 94-111 27-43 (143)
313 3dpu_A RAB family protein; roc 82.2 0.19 6.5E-06 40.8 -0.9 17 97-113 43-59 (535)
314 2r62_A Cell division protease 82.1 0.15 5.3E-06 36.4 -1.3 15 98-112 47-61 (268)
315 2ius_A DNA translocase FTSK; n 81.9 0.19 6.4E-06 42.6 -1.0 21 93-113 165-185 (512)
316 1g8p_A Magnesium-chelatase 38 81.7 0.35 1.2E-05 35.5 0.5 15 98-112 48-62 (350)
317 2gks_A Bifunctional SAT/APS ki 81.4 0.34 1.2E-05 40.6 0.4 16 96-111 373-388 (546)
318 2ohf_A Protein OLA1, GTP-bindi 81.4 0.21 7.3E-06 41.0 -0.8 17 97-113 24-40 (396)
319 1f5n_A Interferon-induced guan 81.4 0.2 7E-06 43.1 -1.0 22 92-113 35-56 (592)
320 2wjy_A Regulator of nonsense t 80.7 0.32 1.1E-05 42.7 -0.0 18 95-112 371-388 (800)
321 2a5y_B CED-4; apoptosis; HET: 80.5 0.44 1.5E-05 38.7 0.7 19 93-111 150-168 (549)
322 2vhj_A Ntpase P4, P4; non- hyd 80.3 0.4 1.4E-05 39.1 0.4 17 96-112 124-140 (331)
323 4f4c_A Multidrug resistance pr 80.1 0.26 9E-06 45.2 -0.8 17 97-113 446-462 (1321)
324 1sxj_A Activator 1 95 kDa subu 79.7 0.44 1.5E-05 38.7 0.5 19 94-112 76-94 (516)
325 3lvq_E ARF-GAP with SH3 domain 79.1 0.29 9.9E-06 38.8 -0.8 18 96-113 323-340 (497)
326 2dhr_A FTSH; AAA+ protein, hex 79.1 0.28 9.7E-06 41.0 -0.8 15 98-112 67-81 (499)
327 2qgz_A Helicase loader, putati 79.0 0.35 1.2E-05 37.0 -0.3 18 95-112 152-169 (308)
328 1puj_A YLQF, conserved hypothe 79.0 0.26 8.8E-06 37.5 -1.0 17 97-113 122-138 (282)
329 3g5u_A MCG1178, multidrug resi 79.0 0.31 1.1E-05 44.6 -0.7 17 97-113 1061-1077(1284)
330 3bgw_A DNAB-like replicative h 78.9 0.44 1.5E-05 38.7 0.3 16 96-111 198-213 (444)
331 3k1j_A LON protease, ATP-depen 78.6 0.29 9.8E-06 40.7 -1.0 16 97-112 62-77 (604)
332 2bjv_A PSP operon transcriptio 78.6 0.44 1.5E-05 34.2 0.1 17 95-112 30-46 (265)
333 2xau_A PRE-mRNA-splicing facto 78.3 0.41 1.4E-05 41.6 -0.1 17 96-112 110-126 (773)
334 1um8_A ATP-dependent CLP prote 78.3 0.58 2E-05 35.6 0.7 17 96-112 73-89 (376)
335 3pih_A Uvrabc system protein A 78.3 0.52 1.8E-05 42.6 0.6 15 97-111 26-40 (916)
336 2hjg_A GTP-binding protein ENG 78.0 0.49 1.7E-05 37.5 0.3 21 93-113 173-193 (436)
337 2j69_A Bacterial dynamin-like 78.0 0.31 1.1E-05 41.8 -0.9 20 94-113 68-87 (695)
338 1xwi_A SKD1 protein; VPS4B, AA 77.8 0.49 1.7E-05 36.1 0.2 17 96-112 46-62 (322)
339 3io5_A Recombination and repai 77.7 0.42 1.4E-05 39.2 -0.2 16 97-112 30-45 (333)
340 2xzl_A ATP-dependent helicase 77.7 0.46 1.6E-05 41.7 0.0 18 95-112 375-392 (802)
341 1xp8_A RECA protein, recombina 77.7 0.5 1.7E-05 37.7 0.2 15 97-111 76-90 (366)
342 3eie_A Vacuolar protein sortin 77.7 0.49 1.7E-05 35.5 0.2 17 96-112 52-68 (322)
343 1r5b_A Eukaryotic peptide chai 77.5 0.26 8.8E-06 39.9 -1.5 21 93-113 41-61 (467)
344 1xzp_A Probable tRNA modificat 77.0 0.22 7.6E-06 41.2 -2.1 18 96-113 244-261 (482)
345 3mca_A HBS1, elongation factor 77.0 0.5 1.7E-05 39.8 0.0 20 94-113 176-195 (592)
346 4a1f_A DNAB helicase, replicat 77.0 0.54 1.8E-05 37.5 0.2 17 96-112 47-63 (338)
347 2ffh_A Protein (FFH); SRP54, s 76.9 0.48 1.6E-05 39.0 -0.1 19 94-112 97-115 (425)
348 1q57_A DNA primase/helicase; d 76.7 0.36 1.2E-05 38.7 -0.8 16 97-112 244-259 (503)
349 1zun_B Sulfate adenylate trans 76.4 0.41 1.4E-05 38.0 -0.6 21 93-113 22-42 (434)
350 3d8b_A Fidgetin-like protein 1 75.7 0.6 2E-05 35.9 0.2 17 96-112 118-134 (357)
351 2r6f_A Excinuclease ABC subuni 75.3 0.63 2.2E-05 42.8 0.2 15 97-111 46-60 (972)
352 2ygr_A Uvrabc system protein A 75.2 0.64 2.2E-05 42.8 0.2 15 97-111 48-62 (993)
353 3hws_A ATP-dependent CLP prote 75.2 0.63 2.1E-05 35.4 0.2 15 97-111 53-67 (363)
354 3u61_B DNA polymerase accessor 74.9 0.69 2.4E-05 34.0 0.3 17 96-112 49-65 (324)
355 1e9r_A Conjugal transfer prote 74.7 0.41 1.4E-05 37.2 -1.0 19 94-112 52-70 (437)
356 1w4r_A Thymidine kinase; type 74.6 0.56 1.9E-05 35.4 -0.3 15 97-111 22-36 (195)
357 2ce7_A Cell division protein F 74.5 0.45 1.5E-05 39.6 -0.9 15 98-112 52-66 (476)
358 3p26_A Elongation factor 1 alp 74.5 0.39 1.3E-05 38.8 -1.2 18 96-113 34-51 (483)
359 2qp9_X Vacuolar protein sortin 74.0 0.69 2.4E-05 35.7 0.1 16 97-112 86-101 (355)
360 3izq_1 HBS1P, elongation facto 74.0 0.78 2.7E-05 38.9 0.5 21 93-113 165-185 (611)
361 4dcu_A GTP-binding protein ENG 73.8 0.74 2.5E-05 36.7 0.3 22 92-113 192-213 (456)
362 3sfz_A APAF-1, apoptotic pepti 72.9 1 3.6E-05 37.9 1.0 19 93-111 145-163 (1249)
363 4f4c_A Multidrug resistance pr 72.5 0.82 2.8E-05 42.0 0.2 15 98-112 1108-1122(1321)
364 2xxa_A Signal recognition part 72.5 1.5 5E-05 35.8 1.7 18 94-111 99-116 (433)
365 3lfu_A DNA helicase II; SF1 he 72.1 0.64 2.2E-05 37.5 -0.5 15 98-112 25-39 (647)
366 1ypw_A Transitional endoplasmi 71.2 0.57 1.9E-05 40.8 -1.1 16 97-112 240-255 (806)
367 1knx_A Probable HPR(Ser) kinas 71.0 0.87 3E-05 36.4 0.1 15 97-111 149-163 (312)
368 3te6_A Regulatory protein SIR3 70.2 0.58 2E-05 37.0 -1.1 20 93-112 43-62 (318)
369 3c5h_A Glucocorticoid receptor 70.0 0.43 1.5E-05 34.8 -1.8 13 101-113 34-46 (255)
370 4a9a_A Ribosome-interacting GT 70.0 0.52 1.8E-05 38.2 -1.4 21 93-113 70-90 (376)
371 2r44_A Uncharacterized protein 69.1 0.67 2.3E-05 34.3 -0.9 16 97-112 48-63 (331)
372 3vfd_A Spastin; ATPase, microt 68.8 1.1 3.6E-05 34.6 0.1 17 96-112 149-165 (389)
373 2zan_A Vacuolar protein sortin 68.6 1.1 3.7E-05 35.8 0.2 17 96-112 168-184 (444)
374 2c9o_A RUVB-like 1; hexameric 68.2 1.1 3.9E-05 35.6 0.2 15 97-111 65-79 (456)
375 1zcb_A G alpha I/13; GTP-bindi 67.7 1.2 4.1E-05 35.4 0.2 20 93-112 31-50 (362)
376 3zvr_A Dynamin-1; hydrolase, D 67.4 0.94 3.2E-05 40.4 -0.5 22 92-113 48-69 (772)
377 1r6b_X CLPA protein; AAA+, N-t 66.8 1.7 6E-05 36.4 1.0 19 93-111 486-504 (758)
378 1ko7_A HPR kinase/phosphatase; 66.2 1.2 4.2E-05 35.5 0.0 15 97-111 146-160 (314)
379 3ec1_A YQEH GTPase; atnos1, at 66.0 0.87 3E-05 35.8 -0.9 17 97-113 164-180 (369)
380 3h2y_A GTPase family protein; 65.9 0.85 2.9E-05 35.9 -1.0 17 97-113 162-178 (368)
381 3pxg_A Negative regulator of g 65.5 2 6.7E-05 34.6 1.1 18 95-112 201-218 (468)
382 1ojl_A Transcriptional regulat 64.1 1.5 5.1E-05 33.2 0.1 17 94-111 25-41 (304)
383 1ii2_A Phosphoenolpyruvate car 64.0 1.6 5.6E-05 37.5 0.4 16 97-112 215-230 (524)
384 1a5t_A Delta prime, HOLB; zinc 63.8 1.8 6E-05 32.9 0.5 19 93-111 21-40 (334)
385 3pxi_A Negative regulator of g 63.6 2.2 7.4E-05 36.1 1.0 20 92-111 518-537 (758)
386 1ytm_A Phosphoenolpyruvate car 63.3 1.7 5.9E-05 37.5 0.4 16 97-112 237-252 (532)
387 2olr_A Phosphoenolpyruvate car 62.6 1.8 6.2E-05 37.6 0.4 16 97-112 243-258 (540)
388 1of1_A Thymidine kinase; trans 62.5 0.96 3.3E-05 37.1 -1.3 19 94-112 48-66 (376)
389 3q5d_A Atlastin-1; G protein, 61.9 1.1 3.7E-05 37.3 -1.1 23 91-113 63-85 (447)
390 2iut_A DNA translocase FTSK; n 61.5 1.2 4.1E-05 38.6 -0.9 20 94-113 213-232 (574)
391 1g41_A Heat shock protein HSLU 61.4 1.8 6.2E-05 36.0 0.2 15 97-111 52-66 (444)
392 1r6b_X CLPA protein; AAA+, N-t 60.6 1.9 6.5E-05 36.1 0.2 18 95-112 207-224 (758)
393 1qvr_A CLPB protein; coiled co 60.3 2.4 8.3E-05 36.6 0.8 20 92-111 585-604 (854)
394 1qvr_A CLPB protein; coiled co 59.9 1.5 5.2E-05 37.8 -0.6 18 95-112 191-208 (854)
395 1j3b_A ATP-dependent phosphoen 57.6 2.3 8E-05 36.7 0.2 16 97-112 227-242 (529)
396 2elf_A Protein translation elo 57.3 1.5 5E-05 34.7 -1.0 18 96-113 22-39 (370)
397 3end_A Light-independent proto 56.8 2.8 9.7E-05 30.8 0.5 20 92-111 38-57 (307)
398 3hu3_A Transitional endoplasmi 56.8 2.4 8.3E-05 34.9 0.2 16 97-112 240-255 (489)
399 4b4t_M 26S protease regulatory 55.5 2.6 8.9E-05 34.9 0.2 15 97-111 217-231 (434)
400 4b4t_L 26S protease subunit RP 55.4 2.6 9E-05 34.9 0.2 15 97-111 217-231 (437)
401 1sky_E F1-ATPase, F1-ATP synth 54.5 1.9 6.4E-05 36.5 -0.9 17 97-113 153-169 (473)
402 4b4t_K 26S protease regulatory 54.1 2.8 9.5E-05 34.6 0.1 14 98-111 209-222 (428)
403 3pxi_A Negative regulator of g 52.8 4.3 0.00015 34.2 1.1 17 95-111 201-217 (758)
404 1vec_A ATP-dependent RNA helic 52.8 5.2 0.00018 26.9 1.3 13 98-110 43-55 (206)
405 3nbx_X ATPase RAVA; AAA+ ATPas 52.7 3.1 0.00011 34.7 0.2 15 98-112 44-58 (500)
406 4ido_A Atlastin-1; GTPase, GTP 51.4 2.2 7.6E-05 36.0 -0.9 23 91-113 63-85 (457)
407 1lkx_A Myosin IE heavy chain; 50.8 4.6 0.00016 35.5 1.0 14 97-110 96-109 (697)
408 2gxq_A Heat resistant RNA depe 50.7 5.1 0.00017 26.9 1.0 13 98-110 41-53 (207)
409 4b4t_J 26S protease regulatory 50.0 3.7 0.00013 34.0 0.2 14 98-111 185-198 (405)
410 1vt4_I APAF-1 related killer D 49.9 4.6 0.00016 38.4 0.9 19 94-112 149-167 (1221)
411 3cmw_A Protein RECA, recombina 48.7 4.2 0.00014 39.4 0.4 15 97-111 385-399 (1706)
412 2z83_A Helicase/nucleoside tri 48.1 7.6 0.00026 30.8 1.7 16 96-111 22-37 (459)
413 1i84_S Smooth muscle myosin he 47.6 5.8 0.0002 36.0 1.1 14 97-110 171-184 (1184)
414 2v26_A Myosin VI; calmodulin-b 47.4 5.6 0.00019 35.4 1.0 14 97-110 142-155 (784)
415 1kk8_A Myosin heavy chain, str 47.1 5.7 0.0002 35.7 1.0 14 97-110 171-184 (837)
416 1w7j_A Myosin VA; motor protei 46.6 5.9 0.0002 35.4 1.0 14 97-110 158-171 (795)
417 1qde_A EIF4A, translation init 46.5 6.5 0.00022 26.9 1.0 13 98-110 54-66 (224)
418 3bfv_A CAPA1, CAPB2, membrane 46.1 6.9 0.00023 29.2 1.1 19 93-111 80-99 (271)
419 1w9i_A Myosin II heavy chain; 45.9 6.1 0.00021 35.3 1.0 14 97-110 174-187 (770)
420 2ycu_A Non muscle myosin 2C, a 45.5 6.3 0.00022 35.8 1.0 14 97-110 148-161 (995)
421 1cip_A Protein (guanine nucleo 45.4 3.1 0.00011 32.9 -0.9 20 93-112 30-49 (353)
422 3iuy_A Probable ATP-dependent 45.4 6.8 0.00023 27.1 1.0 13 98-110 60-72 (228)
423 2dfs_A Myosin-5A; myosin-V, in 44.8 6.5 0.00022 36.1 1.0 15 96-110 157-171 (1080)
424 1ypw_A Transitional endoplasmi 44.7 2.9 9.8E-05 36.4 -1.3 17 96-112 512-528 (806)
425 4db1_A Myosin-7; S1DC, cardiac 44.6 6.6 0.00023 35.1 1.0 15 96-110 172-186 (783)
426 2pl3_A Probable ATP-dependent 44.4 7.2 0.00024 27.1 1.0 13 98-110 65-77 (236)
427 4b4t_H 26S protease regulatory 44.3 4.7 0.00016 34.2 -0.0 15 97-111 245-259 (467)
428 2va8_A SSO2462, SKI2-type heli 43.8 6.1 0.00021 32.7 0.6 16 96-111 47-62 (715)
429 1g8x_A Myosin II heavy chain f 43.8 6.6 0.00022 35.9 0.8 14 97-110 174-187 (1010)
430 1ny5_A Transcriptional regulat 43.2 6.9 0.00024 30.6 0.8 19 92-111 158-176 (387)
431 3cf2_A TER ATPase, transitiona 43.1 5.3 0.00018 35.7 0.1 16 97-112 240-255 (806)
432 3cio_A ETK, tyrosine-protein k 43.0 7.4 0.00025 29.4 0.9 19 93-111 102-121 (299)
433 4anj_A Unconventional myosin-V 42.6 7.4 0.00025 36.0 1.0 14 97-110 146-159 (1052)
434 3k9g_A PF-32 protein; ssgcid, 42.1 5.1 0.00017 28.6 -0.1 19 93-111 25-44 (267)
435 3ice_A Transcription terminati 41.8 3.9 0.00013 34.7 -0.8 15 98-112 177-191 (422)
436 3cmu_A Protein RECA, recombina 41.7 6.2 0.00021 39.0 0.4 15 97-111 385-399 (2050)
437 3cmw_A Protein RECA, recombina 41.6 6.3 0.00021 38.3 0.4 16 97-112 734-749 (1706)
438 1hv8_A Putative ATP-dependent 40.3 9.2 0.00031 27.3 1.0 15 97-111 46-60 (367)
439 3b6e_A Interferon-induced heli 40.3 4.6 0.00016 27.0 -0.6 15 97-111 50-64 (216)
440 3ug7_A Arsenical pump-driving 39.4 7.2 0.00025 30.2 0.4 16 96-111 27-42 (349)
441 2z0m_A 337AA long hypothetical 38.7 10 0.00034 26.9 1.0 13 98-110 34-46 (337)
442 4b4t_I 26S protease regulatory 38.5 6.9 0.00023 33.0 0.1 14 98-111 219-232 (437)
443 3dkp_A Probable ATP-dependent 38.4 10 0.00035 26.5 1.0 13 98-110 69-81 (245)
444 1pjr_A PCRA; DNA repair, DNA r 38.2 5.6 0.00019 33.7 -0.5 16 96-112 26-41 (724)
445 1t6n_A Probable ATP-dependent 38.0 10 0.00036 25.9 1.0 13 98-110 54-66 (220)
446 3cmu_A Protein RECA, recombina 37.8 7.8 0.00027 38.4 0.4 15 97-111 36-50 (2050)
447 3u4q_A ATP-dependent helicase/ 37.7 5.8 0.0002 36.0 -0.5 17 96-112 24-40 (1232)
448 3pey_A ATP-dependent RNA helic 37.0 11 0.00037 27.3 1.0 14 97-110 46-59 (395)
449 3f9v_A Minichromosome maintena 36.9 7.2 0.00025 32.8 -0.0 15 98-112 330-344 (595)
450 3fe2_A Probable ATP-dependent 36.7 10 0.00036 26.6 0.8 13 98-110 69-81 (242)
451 1u0j_A DNA replication protein 36.1 8.1 0.00028 30.2 0.2 15 97-111 106-120 (267)
452 2oxc_A Probable ATP-dependent 36.0 12 0.0004 26.1 1.0 13 98-110 64-76 (230)
453 3bor_A Human initiation factor 36.0 6.9 0.00023 27.6 -0.2 13 98-110 70-82 (237)
454 1wrb_A DJVLGB; RNA helicase, D 35.7 12 0.00041 26.3 1.0 13 98-110 63-75 (253)
455 3fht_A ATP-dependent RNA helic 35.6 12 0.0004 27.5 1.0 14 97-110 66-79 (412)
456 3ly5_A ATP-dependent RNA helic 35.4 9.2 0.00032 27.7 0.4 13 98-110 94-106 (262)
457 3eiq_A Eukaryotic initiation f 35.3 13 0.00045 27.3 1.2 13 98-110 80-92 (414)
458 2i4i_A ATP-dependent RNA helic 34.4 13 0.00043 27.5 1.0 13 98-110 55-67 (417)
459 3ber_A Probable ATP-dependent 34.1 13 0.00044 26.7 1.0 13 98-110 83-95 (249)
460 3la6_A Tyrosine-protein kinase 33.8 13 0.00045 28.1 1.0 19 93-111 90-109 (286)
461 1q0u_A Bstdead; DEAD protein, 33.6 8.5 0.00029 26.5 -0.1 13 98-110 44-56 (219)
462 2fz4_A DNA repair protein RAD2 33.0 13 0.00045 26.8 0.8 14 98-111 111-124 (237)
463 2zj8_A DNA helicase, putative 32.2 11 0.00037 31.4 0.3 16 96-111 40-55 (720)
464 1s2m_A Putative ATP-dependent 32.1 14 0.00049 27.1 1.0 13 98-110 61-73 (400)
465 3rc3_A ATP-dependent RNA helic 31.9 13 0.00046 32.1 0.8 15 96-110 156-170 (677)
466 1azs_C GS-alpha; complex (lyas 31.5 6.7 0.00023 32.0 -1.0 20 93-112 38-57 (402)
467 3fmp_B ATP-dependent RNA helic 31.3 15 0.00052 28.3 1.0 15 96-110 132-146 (479)
468 2j0s_A ATP-dependent RNA helic 30.6 16 0.00054 27.1 1.0 13 98-110 77-89 (410)
469 3avx_A Elongation factor TS, e 30.4 9.7 0.00033 36.4 -0.3 21 93-113 294-314 (1289)
470 2p6r_A Afuhel308 helicase; pro 29.2 8.1 0.00028 32.0 -0.9 15 97-111 42-56 (702)
471 3oiy_A Reverse gyrase helicase 28.8 15 0.0005 27.7 0.5 13 98-110 39-51 (414)
472 1xti_A Probable ATP-dependent 28.6 18 0.00063 26.3 1.0 13 98-110 48-60 (391)
473 1rif_A DAR protein, DNA helica 28.1 16 0.00054 26.4 0.6 13 98-110 131-143 (282)
474 3fmo_B ATP-dependent RNA helic 28.0 19 0.00064 26.9 1.0 13 98-110 134-146 (300)
475 2oze_A ORF delta'; para, walke 27.0 16 0.00054 26.4 0.4 10 102-111 44-53 (298)
476 3ez9_A Para; DNA binding, wing 26.8 18 0.00062 27.9 0.8 15 97-111 114-128 (403)
477 3fho_A ATP-dependent RNA helic 26.0 24 0.00081 28.1 1.3 15 96-110 159-173 (508)
478 3fkq_A NTRC-like two-domain pr 25.2 16 0.00056 28.1 0.2 20 92-111 140-160 (373)
479 4epp_A Poly(ADP-ribose) glycoh 24.9 27 0.00091 30.0 1.5 13 95-107 377-389 (477)
480 1wp9_A ATP-dependent RNA helic 24.3 24 0.00083 25.7 1.0 14 97-110 25-38 (494)
481 2fwr_A DNA repair protein RAD2 24.3 24 0.00081 27.1 1.0 13 98-110 111-123 (472)
482 4akg_A Glutathione S-transfera 24.1 12 0.00041 37.7 -0.9 15 98-112 926-940 (2695)
483 1fuu_A Yeast initiation factor 24.0 15 0.0005 26.7 -0.2 13 98-110 61-73 (394)
484 2whx_A Serine protease/ntpase/ 23.5 31 0.001 29.1 1.6 15 97-111 188-202 (618)
485 4a2p_A RIG-I, retinoic acid in 23.4 25 0.00086 26.9 1.0 13 98-110 25-37 (556)
486 2oca_A DAR protein, ATP-depend 23.0 26 0.00087 27.2 0.9 14 97-110 130-143 (510)
487 3ez2_A Plasmid partition prote 22.5 18 0.0006 27.9 -0.1 15 97-111 111-125 (398)
488 2ykg_A Probable ATP-dependent 21.3 29 0.001 28.0 1.0 13 98-110 31-43 (696)
489 3fgn_A Dethiobiotin synthetase 21.2 27 0.00092 26.3 0.7 19 93-111 24-43 (251)
490 2db3_A ATP-dependent RNA helic 20.9 31 0.001 26.8 1.0 13 98-110 96-108 (434)
491 3i5x_A ATP-dependent RNA helic 20.8 30 0.001 27.2 1.0 14 97-110 113-126 (563)
No 1
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.20 E-value=3.8e-05 Score=53.39 Aligned_cols=21 Identities=33% Similarity=0.306 Sum_probs=18.9
Q ss_pred CCCceEEEecccCCCccCCCC
Q 033696 93 NRIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 93 ~riPvTIiTGfLGsGKtTLLn 113 (113)
.++|+++|.|+.|+|||||+|
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~ 48 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIE 48 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHH
Confidence 468999999999999999964
No 2
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.97 E-value=9.1e-05 Score=51.64 Aligned_cols=21 Identities=29% Similarity=0.271 Sum_probs=18.7
Q ss_pred CCCceEEEecccCCCccCCCC
Q 033696 93 NRIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 93 ~riPvTIiTGfLGsGKtTLLn 113 (113)
.++++++|.|+.|+|||||+|
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~ 56 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIE 56 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHH
Confidence 468999999999999999964
No 3
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.82 E-value=0.0002 Score=56.09 Aligned_cols=22 Identities=23% Similarity=0.099 Sum_probs=19.7
Q ss_pred CCCCceEEEecccCCCccCCCC
Q 033696 92 DNRIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 92 ~~riPvTIiTGfLGsGKtTLLn 113 (113)
....|++.|+|+.|+|||||||
T Consensus 71 ~~~~~~v~lvG~pgaGKSTLln 92 (349)
T 2www_A 71 KPLAFRVGLSGPPGAGKSTFIE 92 (349)
T ss_dssp CCSCEEEEEECCTTSSHHHHHH
T ss_pred ccCceEEEEEcCCCCCHHHHHH
Confidence 4568999999999999999986
No 4
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.47 E-value=0.00045 Score=49.38 Aligned_cols=18 Identities=22% Similarity=0.279 Sum_probs=11.9
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|+|..|||||||++
T Consensus 28 ~ii~l~Gp~GsGKSTl~~ 45 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVAN 45 (231)
T ss_dssp CEEEEECSCC----CHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 478999999999999963
No 5
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.42 E-value=0.00037 Score=48.78 Aligned_cols=18 Identities=39% Similarity=0.521 Sum_probs=15.9
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
=++.|.|..|||||||++
T Consensus 31 ~~~~l~GpnGsGKSTLl~ 48 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAA 48 (251)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHH
Confidence 379999999999999963
No 6
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.37 E-value=0.00041 Score=48.73 Aligned_cols=19 Identities=32% Similarity=0.443 Sum_probs=16.4
Q ss_pred CCceEEEecccCCCccCCC
Q 033696 94 RIPATIITGFLGSGKNTGS 112 (113)
Q Consensus 94 riPvTIiTGfLGsGKtTLL 112 (113)
+-.+++|+|+.|||||||+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIA 46 (200)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3458999999999999985
No 7
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.32 E-value=0.00046 Score=48.86 Aligned_cols=18 Identities=22% Similarity=0.281 Sum_probs=15.9
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|.|..|||||||+|
T Consensus 21 ei~~l~GpnGsGKSTLl~ 38 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVR 38 (207)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 478999999999999974
No 8
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.30 E-value=0.00083 Score=44.61 Aligned_cols=24 Identities=17% Similarity=0.048 Sum_probs=19.8
Q ss_pred CCCCCCceEEEecccCCCccCCCC
Q 033696 90 PPDNRIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 90 ~~~~riPvTIiTGfLGsGKtTLLn 113 (113)
.+....|-.+|.|..|+|||||+|
T Consensus 18 ~~~~~~~~i~v~G~~~~GKSsli~ 41 (195)
T 3pqc_A 18 YPPPLKGEVAFVGRSNVGKSSLLN 41 (195)
T ss_dssp CCCCTTCEEEEEEBTTSSHHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHHH
Confidence 334567889999999999999975
No 9
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.24 E-value=0.00069 Score=45.49 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=19.8
Q ss_pred CCCCCceEEEecccCCCccCCCC
Q 033696 91 PDNRIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 91 ~~~riPvTIiTGfLGsGKtTLLn 113 (113)
+..+.+-.+|.|..|+|||||+|
T Consensus 19 ~~~~~~~i~v~G~~~~GKSsli~ 41 (195)
T 1svi_A 19 PEGGLPEIALAGRSNVGKSSFIN 41 (195)
T ss_dssp CCSCCCEEEEEEBTTSSHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHH
Confidence 34578889999999999999975
No 10
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.21 E-value=0.00057 Score=48.49 Aligned_cols=17 Identities=35% Similarity=0.491 Sum_probs=15.3
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|.+|||||||++
T Consensus 35 ~v~L~G~nGaGKTTLlr 51 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTR 51 (158)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 78899999999999963
No 11
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.20 E-value=0.00071 Score=46.06 Aligned_cols=16 Identities=44% Similarity=0.430 Sum_probs=15.2
Q ss_pred eEEEecccCCCccCCC
Q 033696 97 ATIITGFLGSGKNTGS 112 (113)
Q Consensus 97 vTIiTGfLGsGKtTLL 112 (113)
+++|+|..||||||||
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 8999999999999986
No 12
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.18 E-value=0.00056 Score=47.27 Aligned_cols=17 Identities=35% Similarity=0.385 Sum_probs=15.5
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..|||||||++
T Consensus 27 ~~~l~G~nGsGKSTll~ 43 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAH 43 (231)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 89999999999999963
No 13
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.14 E-value=0.00061 Score=50.15 Aligned_cols=17 Identities=41% Similarity=0.292 Sum_probs=15.4
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 32 ~~~iiG~nGsGKSTLl~ 48 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLY 48 (224)
T ss_dssp EEEEEECTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 78899999999999974
No 14
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=96.12 E-value=0.0011 Score=45.31 Aligned_cols=21 Identities=14% Similarity=0.142 Sum_probs=18.1
Q ss_pred CCCceEEEecccCCCccCCCC
Q 033696 93 NRIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 93 ~riPvTIiTGfLGsGKtTLLn 113 (113)
.+-..++|.|..|+|||||+|
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~ 44 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALN 44 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHH
Confidence 445679999999999999986
No 15
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.10 E-value=0.0007 Score=50.31 Aligned_cols=18 Identities=39% Similarity=0.290 Sum_probs=15.9
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|.|..||||||||+
T Consensus 32 e~~~iiG~nGsGKSTLl~ 49 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLN 49 (235)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred CEEEEECCCCCcHHHHHH
Confidence 378999999999999974
No 16
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.08 E-value=0.00083 Score=47.55 Aligned_cols=21 Identities=33% Similarity=0.308 Sum_probs=17.1
Q ss_pred CCCceEEEecccCCCccCCCC
Q 033696 93 NRIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 93 ~riPvTIiTGfLGsGKtTLLn 113 (113)
++--++.|.|..|||||||++
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~ 40 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSN 40 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHH
Confidence 344578899999999999963
No 17
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.02 E-value=0.00081 Score=49.99 Aligned_cols=17 Identities=29% Similarity=0.403 Sum_probs=15.4
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 34 ~~~l~G~nGsGKSTLl~ 50 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLS 50 (240)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 78899999999999974
No 18
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.00 E-value=0.0011 Score=48.81 Aligned_cols=17 Identities=29% Similarity=0.182 Sum_probs=15.3
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 24 ~~~liG~nGsGKSTLl~ 40 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAM 40 (208)
T ss_dssp EEEEECCTTSSTTHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 67899999999999974
No 19
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.00 E-value=0.00084 Score=50.87 Aligned_cols=18 Identities=44% Similarity=0.519 Sum_probs=16.0
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|+|..||||||||+
T Consensus 26 ~~v~i~Gp~GsGKSTll~ 43 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIA 43 (261)
T ss_dssp EEEEEECSTTCSHHHHHH
T ss_pred CEEEEECCCCccHHHHHH
Confidence 379999999999999974
No 20
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.96 E-value=0.00089 Score=50.22 Aligned_cols=17 Identities=47% Similarity=0.474 Sum_probs=15.4
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 35 ~~~liG~nGsGKSTLlk 51 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLIN 51 (257)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 78899999999999974
No 21
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.95 E-value=0.0009 Score=46.94 Aligned_cols=18 Identities=39% Similarity=0.388 Sum_probs=15.8
Q ss_pred CceEEEecccCCCccCCC
Q 033696 95 IPATIITGFLGSGKNTGS 112 (113)
Q Consensus 95 iPvTIiTGfLGsGKtTLL 112 (113)
-.+++|+|+.|||||||+
T Consensus 25 g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp CEEEEEECSTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 358899999999999984
No 22
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.94 E-value=0.00092 Score=49.72 Aligned_cols=17 Identities=24% Similarity=0.401 Sum_probs=15.5
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 33 ~~~i~G~nGsGKSTLl~ 49 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLS 49 (237)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 78899999999999974
No 23
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.92 E-value=0.00095 Score=49.56 Aligned_cols=17 Identities=29% Similarity=0.278 Sum_probs=15.4
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 30 ~~~i~G~nGsGKSTLl~ 46 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFS 46 (243)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 78899999999999974
No 24
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.88 E-value=0.001 Score=50.31 Aligned_cols=17 Identities=41% Similarity=0.333 Sum_probs=15.3
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 34 ~~~liG~nGsGKSTLlk 50 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLR 50 (262)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 78899999999999974
No 25
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.88 E-value=0.001 Score=49.12 Aligned_cols=17 Identities=24% Similarity=0.300 Sum_probs=15.3
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 36 ~~~i~G~nGsGKSTLl~ 52 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLM 52 (229)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 67899999999999974
No 26
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.86 E-value=0.0011 Score=49.87 Aligned_cols=18 Identities=22% Similarity=0.257 Sum_probs=16.1
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
=++-|.|..||||||||+
T Consensus 25 e~~~liG~nGsGKSTLl~ 42 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLE 42 (240)
T ss_dssp SEEEEECCTTSSHHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
Confidence 588999999999999974
No 27
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.85 E-value=0.001 Score=52.36 Aligned_cols=18 Identities=28% Similarity=0.348 Sum_probs=16.1
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
++++|+|..||||||||+
T Consensus 24 g~~~i~G~NGaGKTTll~ 41 (365)
T 3qf7_A 24 GITVVEGPNGAGKSSLFE 41 (365)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 489999999999999973
No 28
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.84 E-value=0.00096 Score=49.55 Aligned_cols=17 Identities=29% Similarity=0.169 Sum_probs=15.2
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 37 ~~~iiG~NGsGKSTLlk 53 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLK 53 (214)
T ss_dssp CEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 67899999999999974
No 29
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.82 E-value=0.0011 Score=49.50 Aligned_cols=17 Identities=29% Similarity=0.345 Sum_probs=15.5
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 31 ~~~l~G~nGsGKSTLlk 47 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGK 47 (250)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 78899999999999974
No 30
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.82 E-value=0.00098 Score=48.19 Aligned_cols=17 Identities=35% Similarity=0.354 Sum_probs=15.2
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..|||||||++
T Consensus 25 ~~~lvGpsGsGKSTLl~ 41 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIK 41 (218)
T ss_dssp CEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 68899999999999964
No 31
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.81 E-value=0.0011 Score=50.55 Aligned_cols=17 Identities=35% Similarity=0.403 Sum_probs=15.4
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 52 i~~liG~NGsGKSTLlk 68 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLR 68 (263)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEEcCCCCcHHHHHH
Confidence 78899999999999974
No 32
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.81 E-value=0.0014 Score=45.50 Aligned_cols=17 Identities=35% Similarity=0.389 Sum_probs=15.8
Q ss_pred ceEEEecccCCCccCCC
Q 033696 96 PATIITGFLGSGKNTGS 112 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLL 112 (113)
++++|+|..||||||||
T Consensus 24 g~~~I~G~NGsGKStil 40 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLL 40 (149)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 59999999999999986
No 33
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.80 E-value=0.0013 Score=47.44 Aligned_cols=18 Identities=39% Similarity=0.466 Sum_probs=16.1
Q ss_pred CceEEEecccCCCccCCC
Q 033696 95 IPATIITGFLGSGKNTGS 112 (113)
Q Consensus 95 iPvTIiTGfLGsGKtTLL 112 (113)
-.+++|.|..|||||||+
T Consensus 27 ~~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 358999999999999986
No 34
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.79 E-value=0.0012 Score=49.98 Aligned_cols=17 Identities=35% Similarity=0.298 Sum_probs=15.4
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 28 ~~~liG~NGsGKSTLlk 44 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLA 44 (249)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 68899999999999974
No 35
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.78 E-value=0.0012 Score=49.90 Aligned_cols=17 Identities=35% Similarity=0.456 Sum_probs=15.4
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 35 ~~~liG~nGsGKSTLl~ 51 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQ 51 (266)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 78899999999999974
No 36
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.78 E-value=0.0012 Score=50.04 Aligned_cols=17 Identities=53% Similarity=0.479 Sum_probs=15.5
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 48 ~~~l~G~NGsGKSTLlk 64 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSA 64 (267)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 78899999999999974
No 37
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.75 E-value=0.0012 Score=49.44 Aligned_cols=17 Identities=41% Similarity=0.374 Sum_probs=15.3
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 37 ~~~i~G~nGsGKSTLl~ 53 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTK 53 (247)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 78899999999999974
No 38
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.75 E-value=0.0012 Score=50.04 Aligned_cols=17 Identities=29% Similarity=0.221 Sum_probs=15.5
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 43 i~~l~G~NGsGKSTLlk 59 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLR 59 (256)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 78899999999999974
No 39
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.72 E-value=0.0013 Score=50.07 Aligned_cols=17 Identities=47% Similarity=0.522 Sum_probs=15.5
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 47 ~~~i~G~nGsGKSTLlk 63 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAA 63 (271)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 78899999999999974
No 40
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=95.72 E-value=0.0013 Score=50.50 Aligned_cols=17 Identities=35% Similarity=0.399 Sum_probs=15.4
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 49 ~~~liG~NGsGKSTLlk 65 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLN 65 (279)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 68899999999999974
No 41
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=95.72 E-value=0.00083 Score=46.33 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=19.6
Q ss_pred CCCCCceEEEecccCCCccCCCC
Q 033696 91 PDNRIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 91 ~~~riPvTIiTGfLGsGKtTLLn 113 (113)
+..+.|-++|.|..|+|||||+|
T Consensus 25 ~~~~~~~i~v~G~~~~GKSslin 47 (223)
T 4dhe_A 25 PPTVQPEIAFAGRSNAGKSTAIN 47 (223)
T ss_dssp CCCCSCEEEEEESCHHHHHHHHH
T ss_pred CCCCCCEEEEEcCCCCCHHHHHH
Confidence 34567889999999999999975
No 42
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.70 E-value=0.0015 Score=51.01 Aligned_cols=22 Identities=36% Similarity=0.351 Sum_probs=19.1
Q ss_pred CCCCceEEEecccCCCccCCCC
Q 033696 92 DNRIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 92 ~~riPvTIiTGfLGsGKtTLLn 113 (113)
..+-.++.|+|+.|||||||||
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~ 73 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTID 73 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHH
Confidence 3567899999999999999975
No 43
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.69 E-value=0.0014 Score=50.53 Aligned_cols=17 Identities=41% Similarity=0.282 Sum_probs=15.3
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 36 ~~~iiGpnGsGKSTLl~ 52 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQ 52 (275)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 78899999999999974
No 44
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.67 E-value=0.0017 Score=50.43 Aligned_cols=22 Identities=32% Similarity=0.344 Sum_probs=19.4
Q ss_pred CCCCceEEEecccCCCccCCCC
Q 033696 92 DNRIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 92 ~~riPvTIiTGfLGsGKtTLLn 113 (113)
..+.++++|+|+.|+|||||+|
T Consensus 76 ~~~~~~I~i~G~~G~GKSTl~~ 97 (355)
T 3p32_A 76 SGNAHRVGITGVPGVGKSTAIE 97 (355)
T ss_dssp CCCSEEEEEECCTTSSHHHHHH
T ss_pred cCCceEEEEECCCCCCHHHHHH
Confidence 4578999999999999999864
No 45
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.66 E-value=0.0014 Score=44.93 Aligned_cols=16 Identities=38% Similarity=0.351 Sum_probs=15.0
Q ss_pred eEEEecccCCCccCCC
Q 033696 97 ATIITGFLGSGKNTGS 112 (113)
Q Consensus 97 vTIiTGfLGsGKtTLL 112 (113)
+++|.|..|+|||||+
T Consensus 25 ~~~i~G~~GsGKTtl~ 40 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFS 40 (235)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 7999999999999985
No 46
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.66 E-value=0.0014 Score=49.37 Aligned_cols=17 Identities=29% Similarity=0.257 Sum_probs=15.3
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 33 ~~~l~G~nGsGKSTLl~ 49 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLD 49 (253)
T ss_dssp EEEEECCSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 68899999999999974
No 47
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.64 E-value=0.0014 Score=49.41 Aligned_cols=17 Identities=35% Similarity=0.501 Sum_probs=15.4
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 48 ~~~i~G~nGsGKSTLl~ 64 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAK 64 (260)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 78899999999999974
No 48
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.63 E-value=0.0015 Score=49.77 Aligned_cols=17 Identities=35% Similarity=0.305 Sum_probs=15.3
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 39 ~~~liG~nGsGKSTLl~ 55 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLR 55 (266)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 68899999999999974
No 49
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.63 E-value=0.0015 Score=52.13 Aligned_cols=17 Identities=47% Similarity=0.587 Sum_probs=15.9
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
+++|+|..||||||||+
T Consensus 125 ~i~I~GptGSGKTTlL~ 141 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLA 141 (356)
T ss_dssp EEEEECSTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 89999999999999974
No 50
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.47 E-value=0.0033 Score=43.98 Aligned_cols=19 Identities=32% Similarity=0.635 Sum_probs=16.3
Q ss_pred CCceEEEecccCCCccCCC
Q 033696 94 RIPATIITGFLGSGKNTGS 112 (113)
Q Consensus 94 riPvTIiTGfLGsGKtTLL 112 (113)
+..+++|.|+.||||||+.
T Consensus 24 ~~~~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLG 42 (199)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHH
Confidence 4568999999999999983
No 51
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.46 E-value=0.0018 Score=46.99 Aligned_cols=18 Identities=28% Similarity=0.137 Sum_probs=15.5
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++-|+|..|||||||++
T Consensus 26 ~iigI~G~~GsGKSTl~k 43 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCE 43 (245)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
Confidence 378899999999999863
No 52
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.38 E-value=0.0021 Score=52.55 Aligned_cols=18 Identities=39% Similarity=0.436 Sum_probs=16.2
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-+++|+|..||||||||+
T Consensus 168 gii~I~GpnGSGKTTlL~ 185 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLY 185 (418)
T ss_dssp EEEEEECSTTSCHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 489999999999999974
No 53
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.36 E-value=0.0026 Score=44.36 Aligned_cols=20 Identities=30% Similarity=0.273 Sum_probs=16.5
Q ss_pred CCCceEEEecccCCCccCCC
Q 033696 93 NRIPATIITGFLGSGKNTGS 112 (113)
Q Consensus 93 ~riPvTIiTGfLGsGKtTLL 112 (113)
.+.-++.|+|..|||||||+
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~ 38 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLA 38 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 33457889999999999984
No 54
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.36 E-value=0.0021 Score=49.09 Aligned_cols=17 Identities=47% Similarity=0.405 Sum_probs=15.4
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 32 ~~~i~G~NGsGKSTLlk 48 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLR 48 (263)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 78899999999999974
No 55
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.32 E-value=0.002 Score=44.02 Aligned_cols=17 Identities=24% Similarity=0.253 Sum_probs=15.2
Q ss_pred ceEEEecccCCCccCCC
Q 033696 96 PATIITGFLGSGKNTGS 112 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLL 112 (113)
.+++|+|..|+|||||+
T Consensus 39 ~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp CEEEECCSSSSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 46899999999999985
No 56
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.31 E-value=0.0027 Score=45.82 Aligned_cols=17 Identities=35% Similarity=0.389 Sum_probs=15.9
Q ss_pred ceEEEecccCCCccCCC
Q 033696 96 PATIITGFLGSGKNTGS 112 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLL 112 (113)
++++|+|..|+||||+|
T Consensus 24 ~~~~I~G~NgsGKStil 40 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLL 40 (203)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred CeEEEEcCCCCCHHHHH
Confidence 59999999999999986
No 57
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.30 E-value=0.0019 Score=44.55 Aligned_cols=21 Identities=19% Similarity=0.251 Sum_probs=17.5
Q ss_pred CCCceEEEecccCCCccCCCC
Q 033696 93 NRIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 93 ~riPvTIiTGfLGsGKtTLLn 113 (113)
.....++|.|..|+|||||||
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~ 47 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLS 47 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHH
T ss_pred CcceEEEEECcCCCCHHHHHH
Confidence 345678999999999999974
No 58
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.28 E-value=0.002 Score=50.70 Aligned_cols=17 Identities=35% Similarity=0.454 Sum_probs=15.5
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
+++|+|..|||||||||
T Consensus 177 ~i~ivG~sGsGKSTll~ 193 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMK 193 (361)
T ss_dssp CEEEEESSSSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 78999999999999974
No 59
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=95.26 E-value=0.0013 Score=50.49 Aligned_cols=17 Identities=29% Similarity=0.262 Sum_probs=15.9
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
+++|+|..||||||||+
T Consensus 62 ~~~lvG~NGaGKStLl~ 78 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVD 78 (415)
T ss_dssp EEEEEESHHHHHHHHTH
T ss_pred cEEEECCCCCCHHHHHH
Confidence 99999999999999973
No 60
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=95.26 E-value=0.0034 Score=52.55 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=20.5
Q ss_pred CCCCCceEEEecccCCCccCCCC
Q 033696 91 PDNRIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 91 ~~~riPvTIiTGfLGsGKtTLLn 113 (113)
...++|.++|.|+.|+|||||+|
T Consensus 61 ~~~~~~~V~vvG~~n~GKSTLIN 83 (550)
T 2qpt_A 61 DFDGKPMVLVAGQYSTGKTSFIQ 83 (550)
T ss_dssp TTSSCCEEEEEEBTTSCHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHH
Confidence 35678999999999999999986
No 61
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.22 E-value=0.0025 Score=50.53 Aligned_cols=18 Identities=44% Similarity=0.519 Sum_probs=16.0
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|+|..||||||||+
T Consensus 137 ~~i~ivG~~GsGKTTll~ 154 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIA 154 (372)
T ss_dssp EEEEEECSSSSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 379999999999999974
No 62
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.20 E-value=0.0021 Score=50.19 Aligned_cols=17 Identities=41% Similarity=0.429 Sum_probs=15.5
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|+|..|||||||||
T Consensus 173 ~v~i~G~~GsGKTTll~ 189 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIK 189 (330)
T ss_dssp CEEEEESTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 78999999999999974
No 63
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.20 E-value=0.0023 Score=45.14 Aligned_cols=20 Identities=30% Similarity=0.160 Sum_probs=16.7
Q ss_pred CCCceEEEecccCCCccCCC
Q 033696 93 NRIPATIITGFLGSGKNTGS 112 (113)
Q Consensus 93 ~riPvTIiTGfLGsGKtTLL 112 (113)
.+--++.|+|..|||||||+
T Consensus 20 ~~~~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 34458999999999999985
No 64
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.16 E-value=0.0043 Score=47.30 Aligned_cols=16 Identities=44% Similarity=0.403 Sum_probs=15.4
Q ss_pred eEEEecccCCCccCCC
Q 033696 97 ATIITGFLGSGKNTGS 112 (113)
Q Consensus 97 vTIiTGfLGsGKtTLL 112 (113)
+++|+|..||||||||
T Consensus 26 ~~~i~G~NGsGKS~ll 41 (322)
T 1e69_A 26 VTAIVGPNGSGKSNII 41 (322)
T ss_dssp EEEEECCTTTCSTHHH
T ss_pred cEEEECCCCCcHHHHH
Confidence 9999999999999986
No 65
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.15 E-value=0.0033 Score=42.23 Aligned_cols=21 Identities=33% Similarity=0.376 Sum_probs=18.4
Q ss_pred CCCceEEEecccCCCccCCCC
Q 033696 93 NRIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 93 ~riPvTIiTGfLGsGKtTLLn 113 (113)
.+.+-++|.|..|+|||||+|
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~ 66 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLT 66 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 556789999999999999975
No 66
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.06 E-value=0.0027 Score=46.87 Aligned_cols=16 Identities=31% Similarity=0.270 Sum_probs=15.2
Q ss_pred eEEEecccCCCccCCC
Q 033696 97 ATIITGFLGSGKNTGS 112 (113)
Q Consensus 97 vTIiTGfLGsGKtTLL 112 (113)
+++|.|..|+|||||+
T Consensus 37 ~~~i~G~~G~GKTTl~ 52 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFV 52 (296)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEEeCCCCCHHHHH
Confidence 8999999999999996
No 67
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.05 E-value=0.0036 Score=46.14 Aligned_cols=19 Identities=32% Similarity=0.408 Sum_probs=16.5
Q ss_pred CCceEEEecccCCCccCCC
Q 033696 94 RIPATIITGFLGSGKNTGS 112 (113)
Q Consensus 94 riPvTIiTGfLGsGKtTLL 112 (113)
+-.++.|+|+.|||||||+
T Consensus 26 ~g~~I~I~G~~GsGKSTl~ 44 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLC 44 (252)
T ss_dssp TSCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4468999999999999985
No 68
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=95.04 E-value=0.0028 Score=49.09 Aligned_cols=17 Identities=24% Similarity=0.300 Sum_probs=15.4
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 66 ~~~i~G~NGsGKSTLlk 82 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLM 82 (290)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 78899999999999974
No 69
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=95.03 E-value=0.0035 Score=48.84 Aligned_cols=17 Identities=35% Similarity=0.268 Sum_probs=16.0
Q ss_pred ceEEEecccCCCccCCC
Q 033696 96 PATIITGFLGSGKNTGS 112 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLL 112 (113)
.+++|+|..|+||||+|
T Consensus 26 gl~vi~G~NGaGKT~il 42 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIF 42 (371)
T ss_dssp EEEEEEECTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 79999999999999986
No 70
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=95.01 E-value=0.0032 Score=48.75 Aligned_cols=22 Identities=27% Similarity=0.146 Sum_probs=19.2
Q ss_pred CCCCceEEEecccCCCccCCCC
Q 033696 92 DNRIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 92 ~~riPvTIiTGfLGsGKtTLLn 113 (113)
..+.+++.|+|+.|+|||||+|
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~ 74 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLE 74 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHH
T ss_pred cCCCEEEEEEcCCCCCHHHHHH
Confidence 3578899999999999999964
No 71
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.90 E-value=0.0046 Score=42.80 Aligned_cols=18 Identities=22% Similarity=0.054 Sum_probs=15.8
Q ss_pred CceEEEecccCCCccCCC
Q 033696 95 IPATIITGFLGSGKNTGS 112 (113)
Q Consensus 95 iPvTIiTGfLGsGKtTLL 112 (113)
-.+++|.|..|+|||||+
T Consensus 36 g~~~~l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLL 53 (149)
T ss_dssp CSEEEEESSSTTTTCHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 357889999999999986
No 72
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.89 E-value=0.003 Score=52.73 Aligned_cols=17 Identities=35% Similarity=0.436 Sum_probs=15.2
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
+++|+|..|||||||||
T Consensus 262 ~i~I~GptGSGKTTlL~ 278 (511)
T 2oap_1 262 SAIVVGETASGKTTTLN 278 (511)
T ss_dssp CEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 48999999999999974
No 73
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.89 E-value=0.0049 Score=45.02 Aligned_cols=21 Identities=33% Similarity=0.393 Sum_probs=17.0
Q ss_pred CCCCceEEEecccCCCccCCC
Q 033696 92 DNRIPATIITGFLGSGKNTGS 112 (113)
Q Consensus 92 ~~riPvTIiTGfLGsGKtTLL 112 (113)
.++...++|.|.-||||||+.
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~ 41 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFV 41 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHH
T ss_pred ccCceEEEEECCCCCCHHHHH
Confidence 456678999999999999984
No 74
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=94.85 E-value=0.014 Score=39.92 Aligned_cols=21 Identities=19% Similarity=0.173 Sum_probs=17.2
Q ss_pred CCCceEEEecccCCCccCCCC
Q 033696 93 NRIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 93 ~riPvTIiTGfLGsGKtTLLn 113 (113)
.+..-++|.|..|+|||||+|
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~ 51 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLL 51 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTT
T ss_pred CcceEEEEECCCCCCHHHHHH
Confidence 344557889999999999986
No 75
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=94.80 E-value=0.0038 Score=50.27 Aligned_cols=17 Identities=35% Similarity=0.225 Sum_probs=15.5
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 43 ~~~llGpnGsGKSTLLr 59 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILR 59 (355)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 78899999999999974
No 76
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=94.79 E-value=0.0043 Score=49.29 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=17.8
Q ss_pred CCCCCceEEEecccCCCccCCCC
Q 033696 91 PDNRIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 91 ~~~riPvTIiTGfLGsGKtTLLn 113 (113)
....+|++.|.|+.|+|||||||
T Consensus 175 ~~~~~~~V~lvG~~naGKSTLln 197 (364)
T 2qtf_A 175 KRNNIPSIGIVGYTNSGKTSLFN 197 (364)
T ss_dssp ----CCEEEEECBTTSSHHHHHH
T ss_pred hhcCCcEEEEECCCCCCHHHHHH
Confidence 34568989999999999999986
No 77
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=94.77 E-value=0.0047 Score=47.52 Aligned_cols=17 Identities=35% Similarity=0.389 Sum_probs=15.9
Q ss_pred ceEEEecccCCCccCCC
Q 033696 96 PATIITGFLGSGKNTGS 112 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLL 112 (113)
.+++|.|..||||||||
T Consensus 24 ~~~~i~G~NGsGKS~ll 40 (339)
T 3qkt_A 24 GINLIIGQNGSGKSSLL 40 (339)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 69999999999999986
No 78
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=94.76 E-value=0.005 Score=42.94 Aligned_cols=16 Identities=25% Similarity=0.218 Sum_probs=15.0
Q ss_pred eEEEecccCCCccCCC
Q 033696 97 ATIITGFLGSGKNTGS 112 (113)
Q Consensus 97 vTIiTGfLGsGKtTLL 112 (113)
++.|.|..|+|||||+
T Consensus 26 ~~~i~G~~GsGKTtl~ 41 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQIC 41 (243)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 8999999999999985
No 79
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=94.74 E-value=0.005 Score=42.27 Aligned_cols=17 Identities=35% Similarity=0.272 Sum_probs=15.4
Q ss_pred ceEEEecccCCCccCCC
Q 033696 96 PATIITGFLGSGKNTGS 112 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLL 112 (113)
-+++|.|..|+|||||+
T Consensus 21 ~~~~i~G~~GsGKTtl~ 37 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLA 37 (220)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 38999999999999985
No 80
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.69 E-value=0.0069 Score=44.10 Aligned_cols=19 Identities=21% Similarity=0.079 Sum_probs=15.8
Q ss_pred CCCceEEEecccCCCccCC
Q 033696 93 NRIPATIITGFLGSGKNTG 111 (113)
Q Consensus 93 ~riPvTIiTGfLGsGKtTL 111 (113)
.+..++.|+|.-||||||+
T Consensus 20 ~~~~iI~I~G~~GSGKST~ 38 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSV 38 (252)
T ss_dssp -CCEEEEEECSTTSSHHHH
T ss_pred CCcEEEEEECCCCCCHHHH
Confidence 3445889999999999997
No 81
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=94.68 E-value=0.0043 Score=49.96 Aligned_cols=17 Identities=35% Similarity=0.374 Sum_probs=15.4
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 31 ~~~llGpnGsGKSTLLr 47 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLR 47 (372)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCcHHHHHHH
Confidence 78899999999999974
No 82
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=94.61 E-value=0.004 Score=41.97 Aligned_cols=21 Identities=24% Similarity=0.262 Sum_probs=16.8
Q ss_pred CCCceEEEecccCCCccCCCC
Q 033696 93 NRIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 93 ~riPvTIiTGfLGsGKtTLLn 113 (113)
.+..=++|.|..|+|||||+|
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~ 43 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLS 43 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHH
T ss_pred CcceEEEEECcCCCCHHHHHH
Confidence 344557888999999999975
No 83
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=94.60 E-value=0.0046 Score=49.77 Aligned_cols=17 Identities=29% Similarity=0.280 Sum_probs=15.4
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 31 ~~~llGpnGsGKSTLLr 47 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLL 47 (359)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEEcCCCchHHHHHH
Confidence 78899999999999974
No 84
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=94.59 E-value=0.0046 Score=49.81 Aligned_cols=17 Identities=35% Similarity=0.233 Sum_probs=15.4
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 31 ~~~llGpnGsGKSTLLr 47 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLY 47 (362)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCchHHHHHH
Confidence 78899999999999974
No 85
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=94.58 E-value=0.0057 Score=44.98 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=19.9
Q ss_pred CCCCceEEEecccCCCccCCCC
Q 033696 92 DNRIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 92 ~~riPvTIiTGfLGsGKtTLLn 113 (113)
+..+|.++|.|..|+|||||||
T Consensus 21 ~~~~~~I~vvG~~~~GKSTlln 42 (315)
T 1jwy_B 21 PLDLPQIVVVGSQSSGKSSVLE 42 (315)
T ss_dssp TTCCCEEEEEECSSSSHHHHHH
T ss_pred CCCCCeEEEEcCCCCCHHHHHH
Confidence 4678999999999999999986
No 86
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.54 E-value=0.0083 Score=45.61 Aligned_cols=16 Identities=38% Similarity=0.474 Sum_probs=14.5
Q ss_pred ceEEEecccCCCccCC
Q 033696 96 PATIITGFLGSGKNTG 111 (113)
Q Consensus 96 PvTIiTGfLGsGKtTL 111 (113)
-++||.|+.|||||||
T Consensus 34 ~livl~G~sGsGKSTl 49 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSL 49 (287)
T ss_dssp EEEEEECCTTSCTHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3788999999999997
No 87
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=94.54 E-value=0.0046 Score=50.07 Aligned_cols=18 Identities=33% Similarity=0.305 Sum_probs=15.8
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
=++.|.|..||||||||+
T Consensus 31 e~~~llGpsGsGKSTLLr 48 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLR 48 (359)
T ss_dssp CEEEEEESTTSSHHHHHH
T ss_pred CEEEEECCCCchHHHHHH
Confidence 378899999999999974
No 88
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=94.54 E-value=0.0048 Score=49.86 Aligned_cols=17 Identities=29% Similarity=0.343 Sum_probs=15.4
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 39 ~~~llGpnGsGKSTLLr 55 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLR 55 (372)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCChHHHHHH
Confidence 78899999999999974
No 89
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=94.52 E-value=0.0056 Score=46.74 Aligned_cols=19 Identities=26% Similarity=0.352 Sum_probs=16.7
Q ss_pred CCceEEEecccCCCccCCC
Q 033696 94 RIPATIITGFLGSGKNTGS 112 (113)
Q Consensus 94 riPvTIiTGfLGsGKtTLL 112 (113)
....+++.|..|+|||||+
T Consensus 50 ~~~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 50 VLDHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CCCCEEEESSTTSSHHHHH
T ss_pred CCCeEEEECCCCCcHHHHH
Confidence 4567999999999999986
No 90
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.48 E-value=0.0077 Score=44.13 Aligned_cols=16 Identities=38% Similarity=0.451 Sum_probs=14.6
Q ss_pred ceEEEecccCCCccCC
Q 033696 96 PATIITGFLGSGKNTG 111 (113)
Q Consensus 96 PvTIiTGfLGsGKtTL 111 (113)
.+++|+|..||||||+
T Consensus 33 ~~i~l~G~~GsGKSTl 48 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTI 48 (253)
T ss_dssp EEEEEESCGGGTTHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4789999999999997
No 91
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.44 E-value=0.0049 Score=46.96 Aligned_cols=18 Identities=28% Similarity=0.298 Sum_probs=15.6
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
=++-|+|..|||||||++
T Consensus 81 ~iigI~G~~GsGKSTl~~ 98 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTAR 98 (308)
T ss_dssp EEEEEEECTTSSHHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
Confidence 478899999999999863
No 92
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=94.42 E-value=0.0051 Score=44.34 Aligned_cols=18 Identities=39% Similarity=0.464 Sum_probs=15.8
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|.|..|||||||++
T Consensus 21 ~~i~i~G~~GsGKSTl~~ 38 (230)
T 2vp4_A 21 FTVLIEGNIGSGKTTYLN 38 (230)
T ss_dssp EEEEEECSTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 478899999999999863
No 93
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.41 E-value=0.0083 Score=41.60 Aligned_cols=16 Identities=31% Similarity=0.443 Sum_probs=14.3
Q ss_pred ceEEEecccCCCccCC
Q 033696 96 PATIITGFLGSGKNTG 111 (113)
Q Consensus 96 PvTIiTGfLGsGKtTL 111 (113)
-+++|+|..||||||+
T Consensus 21 ~~I~l~G~~GsGKST~ 36 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQ 36 (201)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3688999999999997
No 94
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=94.35 E-value=0.0071 Score=46.71 Aligned_cols=22 Identities=36% Similarity=0.484 Sum_probs=19.4
Q ss_pred CCCCceEEEecccCCCccCCCC
Q 033696 92 DNRIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 92 ~~riPvTIiTGfLGsGKtTLLn 113 (113)
+.+.+.+++.|+.|+|||||+|
T Consensus 164 ~~~~~~v~lvG~~gvGKSTLin 185 (357)
T 2e87_A 164 DLEIPTVVIAGHPNVGKSTLLK 185 (357)
T ss_dssp CSSSCEEEEECSTTSSHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHH
Confidence 3578899999999999999975
No 95
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.35 E-value=0.0056 Score=47.68 Aligned_cols=19 Identities=21% Similarity=0.162 Sum_probs=16.0
Q ss_pred CceEEEecccCCCccCCCC
Q 033696 95 IPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 95 iPvTIiTGfLGsGKtTLLn 113 (113)
--++-|.|..|||||||++
T Consensus 90 g~ivgI~G~sGsGKSTL~~ 108 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTAR 108 (312)
T ss_dssp CEEEEEECCTTSCHHHHHH
T ss_pred CEEEEEECCCCchHHHHHH
Confidence 3478899999999999963
No 96
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=94.33 E-value=0.0037 Score=50.01 Aligned_cols=17 Identities=29% Similarity=0.243 Sum_probs=15.5
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 28 ~~~llGpnGsGKSTLLr 44 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLE 44 (348)
T ss_dssp EEEEECCCTHHHHHHHH
T ss_pred EEEEECCCCccHHHHHH
Confidence 78899999999999974
No 97
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=94.29 E-value=0.0052 Score=43.88 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=17.7
Q ss_pred CCCCceEEEecccCCCccCCCC
Q 033696 92 DNRIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 92 ~~riPvTIiTGfLGsGKtTLLn 113 (113)
..+.+-++|.|..|+|||||+|
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin 47 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGN 47 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHH
Confidence 4556778999999999999975
No 98
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=94.23 E-value=0.0033 Score=50.15 Aligned_cols=17 Identities=35% Similarity=0.186 Sum_probs=15.5
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 33 ~~~llGpnGsGKSTLLr 49 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMR 49 (353)
T ss_dssp EEEEECSCHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 78899999999999974
No 99
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.22 E-value=0.0074 Score=44.44 Aligned_cols=17 Identities=18% Similarity=0.155 Sum_probs=15.5
Q ss_pred ceEEEecccCCCccCCC
Q 033696 96 PATIITGFLGSGKNTGS 112 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLL 112 (113)
=+++|.|..|+|||||+
T Consensus 31 ~i~~i~G~~GsGKTtl~ 47 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLA 47 (279)
T ss_dssp SEEEEEESTTSSHHHHH
T ss_pred CEEEEEcCCCCCHHHHH
Confidence 38999999999999985
No 100
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=94.21 E-value=0.0062 Score=46.63 Aligned_cols=17 Identities=29% Similarity=0.376 Sum_probs=15.8
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.+.|..|+|||||||
T Consensus 167 i~~l~G~sG~GKSTLln 183 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILS 183 (302)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 78899999999999986
No 101
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.21 E-value=0.0076 Score=44.74 Aligned_cols=21 Identities=29% Similarity=0.499 Sum_probs=17.9
Q ss_pred CCCCceEEEecccCCCccCCC
Q 033696 92 DNRIPATIITGFLGSGKNTGS 112 (113)
Q Consensus 92 ~~riPvTIiTGfLGsGKtTLL 112 (113)
..+.|..+++|..|+|||||+
T Consensus 33 ~~~~~~~ll~Gp~G~GKTtl~ 53 (354)
T 1sxj_E 33 PRDLPHLLLYGPNGTGKKTRC 53 (354)
T ss_dssp TTCCCCEEEECSTTSSHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHH
Confidence 356777999999999999985
No 102
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=94.20 E-value=0.0054 Score=41.17 Aligned_cols=26 Identities=27% Similarity=0.310 Sum_probs=16.6
Q ss_pred CCCCCCCCceEEEecccCCCccCCCC
Q 033696 88 KIPPDNRIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 88 ~~~~~~riPvTIiTGfLGsGKtTLLn 113 (113)
...+..+..-++|.|.-|+|||||+|
T Consensus 14 ~~~~~~~~~~i~v~G~~~~GKSsli~ 39 (181)
T 2h17_A 14 LVPRGSQEHKVIIVGLDNAGKTTILY 39 (181)
T ss_dssp -------CEEEEEEEETTSSHHHHHH
T ss_pred ccCCCCceeEEEEECCCCCCHHHHHH
Confidence 33444555678899999999999975
No 103
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.19 E-value=0.015 Score=43.54 Aligned_cols=23 Identities=26% Similarity=0.209 Sum_probs=18.6
Q ss_pred CCCCCCCceEEEecccCCCccCC
Q 033696 89 IPPDNRIPATIITGFLGSGKNTG 111 (113)
Q Consensus 89 ~~~~~riPvTIiTGfLGsGKtTL 111 (113)
..+.++-.|+||.|..||||+|.
T Consensus 23 ~~~~~k~kiI~llGpPGsGKgTq 45 (217)
T 3umf_A 23 DQKLAKAKVIFVLGGPGSGKGTQ 45 (217)
T ss_dssp -CCTTSCEEEEEECCTTCCHHHH
T ss_pred chhccCCcEEEEECCCCCCHHHH
Confidence 34456678999999999999995
No 104
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.18 E-value=0.0069 Score=44.82 Aligned_cols=19 Identities=26% Similarity=0.434 Sum_probs=16.8
Q ss_pred CCceEEEecccCCCccCCC
Q 033696 94 RIPATIITGFLGSGKNTGS 112 (113)
Q Consensus 94 riPvTIiTGfLGsGKtTLL 112 (113)
..|.++|+|..|+|||||+
T Consensus 43 ~~~~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 43 HYPRATLLGRPGTGKTVTL 61 (389)
T ss_dssp SCCEEEEECCTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3578999999999999985
No 105
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=94.17 E-value=0.0065 Score=49.63 Aligned_cols=17 Identities=29% Similarity=0.301 Sum_probs=15.4
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 31 ~~~llGpsGsGKSTLLr 47 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLR 47 (381)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEEcCCCchHHHHHH
Confidence 78899999999999974
No 106
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=94.07 E-value=0.0059 Score=51.46 Aligned_cols=22 Identities=32% Similarity=0.379 Sum_probs=19.4
Q ss_pred CCCCceEEEecccCCCccCCCC
Q 033696 92 DNRIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 92 ~~riPvTIiTGfLGsGKtTLLn 113 (113)
+-.+|.+.|.|..|||||||||
T Consensus 42 ~l~lp~iaIvG~nGsGKSTLL~ 63 (608)
T 3szr_A 42 DLALPAIAVIGDQSSGKSSVLE 63 (608)
T ss_dssp SCCCCCEECCCCTTSCHHHHHH
T ss_pred cccCCeEEEECCCCChHHHHHH
Confidence 4568899999999999999974
No 107
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.05 E-value=0.011 Score=41.69 Aligned_cols=17 Identities=35% Similarity=0.399 Sum_probs=15.0
Q ss_pred ceEEEecccCCCccCCC
Q 033696 96 PATIITGFLGSGKNTGS 112 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLL 112 (113)
.+++|+|+.||||||+.
T Consensus 26 ~~i~~~G~~GsGKsT~~ 42 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLA 42 (211)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 47889999999999974
No 108
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=94.04 E-value=0.0073 Score=53.31 Aligned_cols=18 Identities=39% Similarity=0.215 Sum_probs=16.3
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-+++|||..|+||||||+
T Consensus 608 ~i~~ItGpNGsGKSTlLr 625 (800)
T 1wb9_A 608 RMLIITGPNMGGKSTYMR 625 (800)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred cEEEEECCCCCChHHHHH
Confidence 489999999999999974
No 109
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=93.96 E-value=0.0078 Score=52.95 Aligned_cols=18 Identities=33% Similarity=0.193 Sum_probs=16.3
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-+++|+|..|+||||||+
T Consensus 577 ~i~~I~GpNGsGKSTlLr 594 (765)
T 1ewq_A 577 ELVLITGPNMAGKSTFLR 594 (765)
T ss_dssp CEEEEESCSSSSHHHHHH
T ss_pred cEEEEECCCCCChHHHHH
Confidence 489999999999999974
No 110
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=93.93 E-value=0.008 Score=47.43 Aligned_cols=18 Identities=39% Similarity=0.261 Sum_probs=16.3
Q ss_pred CceEEEecccCCCccCCC
Q 033696 95 IPATIITGFLGSGKNTGS 112 (113)
Q Consensus 95 iPvTIiTGfLGsGKtTLL 112 (113)
-.+++|.|..|+||||||
T Consensus 26 ~~~~~i~G~nG~GKstll 43 (430)
T 1w1w_A 26 SNFTSIIGPNGSGKSNMM 43 (430)
T ss_dssp CSEEEEECSTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 369999999999999986
No 111
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=93.91 E-value=0.0078 Score=49.00 Aligned_cols=18 Identities=28% Similarity=0.213 Sum_probs=15.7
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++-|.|..||||||||+
T Consensus 55 ei~~IiGpnGaGKSTLlr 72 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIR 72 (366)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred CEEEEEcCCCchHHHHHH
Confidence 378899999999999964
No 112
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=93.89 E-value=0.01 Score=49.75 Aligned_cols=17 Identities=41% Similarity=0.460 Sum_probs=15.4
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..|||||||||
T Consensus 350 ~vaIiGpnGsGKSTLl~ 366 (670)
T 3ux8_A 350 FVAVTGVSGSGKSTLVN 366 (670)
T ss_dssp EEEEECSTTSSHHHHHT
T ss_pred EEEEEeeCCCCHHHHHH
Confidence 67899999999999975
No 113
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=93.88 E-value=0.0094 Score=45.84 Aligned_cols=22 Identities=27% Similarity=0.312 Sum_probs=19.4
Q ss_pred CCCCceEEEecccCCCccCCCC
Q 033696 92 DNRIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 92 ~~riPvTIiTGfLGsGKtTLLn 113 (113)
...+|-++|.|.-|+|||||||
T Consensus 31 ~~~lp~I~vvG~~~sGKSSLln 52 (360)
T 3t34_A 31 WDSLPAIAVVGGQSSGKSSVLE 52 (360)
T ss_dssp -CCCCEEEEECBTTSSHHHHHH
T ss_pred cccCCEEEEECCCCCcHHHHHH
Confidence 3579999999999999999975
No 114
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.83 E-value=0.0081 Score=46.55 Aligned_cols=16 Identities=38% Similarity=0.580 Sum_probs=15.0
Q ss_pred eEEEecccCCCccCCC
Q 033696 97 ATIITGFLGSGKNTGS 112 (113)
Q Consensus 97 vTIiTGfLGsGKtTLL 112 (113)
|+.+.|..|||||||+
T Consensus 102 vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 102 VIMIVGVNGGGKTTSL 117 (302)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 8889999999999986
No 115
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=93.81 E-value=0.015 Score=38.97 Aligned_cols=18 Identities=17% Similarity=0.084 Sum_probs=4.4
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
.-++|.|.-|+|||||+|
T Consensus 21 ~~i~v~G~~~~GKssli~ 38 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALIS 38 (208)
T ss_dssp EEEEEC------------
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457889999999999986
No 116
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=93.76 E-value=0.0078 Score=45.69 Aligned_cols=18 Identities=33% Similarity=0.499 Sum_probs=15.7
Q ss_pred CceEEEecccCCCccCCC
Q 033696 95 IPATIITGFLGSGKNTGS 112 (113)
Q Consensus 95 iPvTIiTGfLGsGKtTLL 112 (113)
-.+++|+|+.||||||+.
T Consensus 48 g~~i~l~G~~GsGKSTl~ 65 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVG 65 (250)
T ss_dssp TCCEEEECSTTSCHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 357899999999999984
No 117
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=93.76 E-value=0.011 Score=39.35 Aligned_cols=17 Identities=29% Similarity=0.411 Sum_probs=15.2
Q ss_pred ceEEEecccCCCccCCC
Q 033696 96 PATIITGFLGSGKNTGS 112 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLL 112 (113)
++.+|+|.-|+|||||+
T Consensus 46 ~~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIA 62 (250)
T ss_dssp SEEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 47899999999999985
No 118
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.74 E-value=0.013 Score=40.80 Aligned_cols=16 Identities=31% Similarity=0.441 Sum_probs=14.8
Q ss_pred eEEEecccCCCccCCC
Q 033696 97 ATIITGFLGSGKNTGS 112 (113)
Q Consensus 97 vTIiTGfLGsGKtTLL 112 (113)
+++|.|..|+|||||+
T Consensus 25 ~~~i~G~~GsGKTtl~ 40 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFS 40 (247)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 8999999999999983
No 119
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=93.71 E-value=0.012 Score=42.73 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=20.1
Q ss_pred CCCCCceEEEecccCCCccCCCC
Q 033696 91 PDNRIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 91 ~~~riPvTIiTGfLGsGKtTLLn 113 (113)
+....|-.+|.|..|+|||||||
T Consensus 22 ~~~~~~~i~vvG~~~~GKSSLln 44 (299)
T 2aka_B 22 ADLDLPQIAVVGGQSAGKSSVLE 44 (299)
T ss_dssp TTCCCCEEEEEEBTTSCHHHHHH
T ss_pred CCCCCCeEEEEeCCCCCHHHHHH
Confidence 34678999999999999999976
No 120
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.69 E-value=0.015 Score=45.23 Aligned_cols=19 Identities=32% Similarity=0.391 Sum_probs=16.0
Q ss_pred CceEEEecccCCCccCCCC
Q 033696 95 IPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 95 iPvTIiTGfLGsGKtTLLn 113 (113)
--++.|.|..|||||||++
T Consensus 102 g~vi~lvG~nGsGKTTll~ 120 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIA 120 (304)
T ss_dssp SSEEEEECSTTSSHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHH
Confidence 3488889999999999863
No 121
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=93.65 E-value=0.008 Score=40.47 Aligned_cols=22 Identities=27% Similarity=0.231 Sum_probs=16.9
Q ss_pred CCCCceEEEecccCCCccCCCC
Q 033696 92 DNRIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 92 ~~riPvTIiTGfLGsGKtTLLn 113 (113)
..+..-++|.|..|+|||||+|
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~ 38 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTY 38 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHH
T ss_pred CCceEEEEEECCCCCCHHHHHH
Confidence 3455667889999999999975
No 122
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=93.61 E-value=0.0094 Score=45.37 Aligned_cols=17 Identities=24% Similarity=0.407 Sum_probs=15.6
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.+.|..|+|||||||
T Consensus 171 iv~l~G~sG~GKSTll~ 187 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLN 187 (301)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred eEEEECCCCCcHHHHHH
Confidence 78899999999999976
No 123
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=93.58 E-value=0.0086 Score=49.36 Aligned_cols=20 Identities=30% Similarity=0.315 Sum_probs=17.3
Q ss_pred CCceEEEecccCCCccCCCC
Q 033696 94 RIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 94 riPvTIiTGfLGsGKtTLLn 113 (113)
+=+++.|.|..||||||||+
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr 156 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSR 156 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 34789999999999999974
No 124
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.55 E-value=0.0064 Score=47.77 Aligned_cols=17 Identities=29% Similarity=0.309 Sum_probs=15.1
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++-|.|..||||||||+
T Consensus 82 ~vaivG~sGsGKSTLl~ 98 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILR 98 (306)
T ss_dssp EEEEESSSCHHHHHHHH
T ss_pred EEEEECCCCchHHHHHH
Confidence 67899999999999964
No 125
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=93.54 E-value=0.01 Score=53.48 Aligned_cols=18 Identities=39% Similarity=0.168 Sum_probs=16.2
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-+++|||..|+||||||+
T Consensus 663 ~i~~ItGpNGsGKSTlLr 680 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIR 680 (934)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 489999999999999974
No 126
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=93.52 E-value=0.0088 Score=41.43 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=17.2
Q ss_pred CCCCCceEEEecccCCCccCCCC
Q 033696 91 PDNRIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 91 ~~~riPvTIiTGfLGsGKtTLLn 113 (113)
+.....-++|.|.-|+|||||+|
T Consensus 19 ~~~~~~ki~vvG~~~vGKSsLi~ 41 (195)
T 3cbq_A 19 QKDGIFKVMLVGESGVGKSTLAG 41 (195)
T ss_dssp ---CEEEEEEECSTTSSHHHHHH
T ss_pred CCCcEEEEEEECCCCCCHHHHHH
Confidence 34455678899999999999974
No 127
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=93.51 E-value=0.009 Score=42.87 Aligned_cols=15 Identities=27% Similarity=0.410 Sum_probs=14.0
Q ss_pred EEEecccCCCccCCC
Q 033696 98 TIITGFLGSGKNTGS 112 (113)
Q Consensus 98 TIiTGfLGsGKtTLL 112 (113)
++|.|..|+|||||+
T Consensus 52 ~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLA 66 (254)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 789999999999985
No 128
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=93.49 E-value=0.0099 Score=43.01 Aligned_cols=17 Identities=29% Similarity=0.524 Sum_probs=16.1
Q ss_pred ceEEEecccCCCccCCC
Q 033696 96 PATIITGFLGSGKNTGS 112 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLL 112 (113)
++++|+|.-|.|||+|+
T Consensus 31 ~~v~i~G~~G~GKT~L~ 47 (357)
T 2fna_A 31 PITLVLGLRRTGKSSII 47 (357)
T ss_dssp SEEEEEESTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 79999999999999986
No 129
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.49 E-value=0.01 Score=46.83 Aligned_cols=17 Identities=18% Similarity=0.133 Sum_probs=15.3
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 128 ~vaIvGpsGsGKSTLl~ 144 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCN 144 (305)
T ss_dssp EEEEECSSSSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 68899999999999974
No 130
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=93.42 E-value=0.0074 Score=54.35 Aligned_cols=18 Identities=33% Similarity=0.220 Sum_probs=16.3
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-+++|||..|+||||||+
T Consensus 674 ~i~~ItGPNGaGKSTlLr 691 (918)
T 3thx_B 674 RVMIITGPNMGGKSSYIK 691 (918)
T ss_dssp CEEEEESCCCHHHHHHHH
T ss_pred eEEEEECCCCCchHHHHH
Confidence 489999999999999974
No 131
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=93.38 E-value=0.01 Score=48.20 Aligned_cols=18 Identities=33% Similarity=0.278 Sum_probs=15.7
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
=++.|.|..||||||||+
T Consensus 48 e~~~llGpsGsGKSTLLr 65 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLS 65 (390)
T ss_dssp CEEEEEESTTSSHHHHHH
T ss_pred CEEEEECCCCChHHHHHH
Confidence 368899999999999974
No 132
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=93.36 E-value=0.011 Score=38.38 Aligned_cols=17 Identities=24% Similarity=0.307 Sum_probs=14.6
Q ss_pred ceEEEecccCCCccCCC
Q 033696 96 PATIITGFLGSGKNTGS 112 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLL 112 (113)
+..+|+|.-|+|||+|+
T Consensus 44 ~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred CceEEECCCCCCHHHHH
Confidence 45689999999999984
No 133
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=93.33 E-value=0.0082 Score=40.16 Aligned_cols=18 Identities=22% Similarity=0.270 Sum_probs=15.1
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
.-+++.|.-|+|||||+|
T Consensus 22 ~ki~vvG~~~~GKSsli~ 39 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTI 39 (190)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECcCCCCHHHHHH
Confidence 356788999999999974
No 134
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=93.32 E-value=0.011 Score=47.30 Aligned_cols=16 Identities=38% Similarity=0.250 Sum_probs=15.4
Q ss_pred eEEEecccCCCccCCC
Q 033696 97 ATIITGFLGSGKNTGS 112 (113)
Q Consensus 97 vTIiTGfLGsGKtTLL 112 (113)
+++|.|..|+||||||
T Consensus 28 ~~~i~G~nG~GKttll 43 (359)
T 2o5v_A 28 VTGIYGENGAGKTNLL 43 (359)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCChhHHH
Confidence 9999999999999986
No 135
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=93.27 E-value=0.012 Score=46.49 Aligned_cols=18 Identities=39% Similarity=0.493 Sum_probs=15.8
Q ss_pred CceEEEecccCCCccCCC
Q 033696 95 IPATIITGFLGSGKNTGS 112 (113)
Q Consensus 95 iPvTIiTGfLGsGKtTLL 112 (113)
=-++.+.|..|||||||+
T Consensus 129 g~vi~lvG~nGaGKTTll 146 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTI 146 (328)
T ss_dssp SEEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 348899999999999986
No 136
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=93.27 E-value=0.012 Score=49.06 Aligned_cols=18 Identities=33% Similarity=0.324 Sum_probs=15.8
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
=++.|.|..||||||||+
T Consensus 48 e~~~LvG~NGaGKSTLlk 65 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVK 65 (538)
T ss_dssp SEEEEECCTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 378899999999999974
No 137
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=93.20 E-value=0.012 Score=53.18 Aligned_cols=18 Identities=28% Similarity=0.174 Sum_probs=16.4
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-+++|||..|+||||||+
T Consensus 790 ~i~~ItGpNgsGKSTlLr 807 (1022)
T 2o8b_B 790 YCVLVTGPNMGGKSTLMR 807 (1022)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred cEEEEECCCCCChHHHHH
Confidence 589999999999999974
No 138
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=93.19 E-value=0.011 Score=48.47 Aligned_cols=20 Identities=30% Similarity=0.338 Sum_probs=17.7
Q ss_pred CCceEEEecccCCCccCCCC
Q 033696 94 RIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 94 riPvTIiTGfLGsGKtTLLn 113 (113)
+-+++-|.|..|+|||||||
T Consensus 68 ~~~~valvG~nGaGKSTLln 87 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFIN 87 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHH
Confidence 45689999999999999976
No 139
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=93.16 E-value=0.016 Score=47.95 Aligned_cols=17 Identities=29% Similarity=0.405 Sum_probs=15.3
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 369 ~~~ivG~sGsGKSTll~ 385 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLIN 385 (578)
T ss_dssp EEEEECSTTSSHHHHHT
T ss_pred EEEEECCCCChHHHHHH
Confidence 67899999999999975
No 140
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=93.16 E-value=0.016 Score=39.54 Aligned_cols=19 Identities=21% Similarity=0.200 Sum_probs=16.3
Q ss_pred CCceEEEecccCCCccCCC
Q 033696 94 RIPATIITGFLGSGKNTGS 112 (113)
Q Consensus 94 riPvTIiTGfLGsGKtTLL 112 (113)
+-+..+|+|..|+|||||+
T Consensus 51 ~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp SCSEEEEECSTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3467899999999999984
No 141
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.02 E-value=0.013 Score=47.82 Aligned_cols=17 Identities=35% Similarity=0.522 Sum_probs=15.4
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..|||||||++
T Consensus 41 ~~~l~G~nGsGKSTL~~ 57 (525)
T 1tf7_A 41 STLVSGTSGTGKTLFSI 57 (525)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEEcCCCCCHHHHHH
Confidence 79999999999999963
No 142
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.01 E-value=0.023 Score=42.84 Aligned_cols=19 Identities=32% Similarity=0.398 Sum_probs=15.9
Q ss_pred CCceEEEecccCCCccCCC
Q 033696 94 RIPATIITGFLGSGKNTGS 112 (113)
Q Consensus 94 riPvTIiTGfLGsGKtTLL 112 (113)
+.-+++|+|.-||||||+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva 92 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVA 92 (281)
T ss_dssp TCEEEEEEECTTSCHHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 3457899999999999973
No 143
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=93.01 E-value=0.011 Score=45.67 Aligned_cols=17 Identities=29% Similarity=0.173 Sum_probs=15.0
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
...|.|..|||||||++
T Consensus 172 k~~IvG~nGsGKSTLlk 188 (365)
T 1lw7_A 172 TVAILGGESSGKSVLVN 188 (365)
T ss_dssp EEEEECCTTSHHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 57899999999999964
No 144
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=92.98 E-value=0.014 Score=47.27 Aligned_cols=17 Identities=29% Similarity=0.378 Sum_probs=15.8
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..|+|||||||
T Consensus 217 ~~~lvG~sG~GKSTLln 233 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLN 233 (358)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCccHHHHHH
Confidence 78999999999999986
No 145
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=92.97 E-value=0.018 Score=47.80 Aligned_cols=17 Identities=41% Similarity=0.452 Sum_probs=15.0
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++-|.|..||||||||+
T Consensus 372 ~~~ivG~sGsGKSTLl~ 388 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLS 388 (595)
T ss_dssp EEEEECCTTSSSTHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 67799999999999964
No 146
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=92.97 E-value=0.016 Score=40.76 Aligned_cols=22 Identities=18% Similarity=0.217 Sum_probs=18.6
Q ss_pred CCCCceEEEecccCCCccCCCC
Q 033696 92 DNRIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 92 ~~riPvTIiTGfLGsGKtTLLn 113 (113)
+.+.+-++|.|..|+|||||+|
T Consensus 26 ~~~~~kI~vvG~~~vGKSsLin 47 (228)
T 2qu8_A 26 NPHKKTIILSGAPNVGKSSFMN 47 (228)
T ss_dssp CTTSEEEEEECSTTSSHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHH
Confidence 3566788999999999999975
No 147
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=92.93 E-value=0.019 Score=44.22 Aligned_cols=20 Identities=30% Similarity=0.233 Sum_probs=16.8
Q ss_pred CCCceEEEecccCCCccCCC
Q 033696 93 NRIPATIITGFLGSGKNTGS 112 (113)
Q Consensus 93 ~riPvTIiTGfLGsGKtTLL 112 (113)
++-.++.|.|..|||||||.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTS 48 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 44568889999999999984
No 148
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=92.89 E-value=0.014 Score=48.53 Aligned_cols=17 Identities=35% Similarity=0.194 Sum_probs=15.2
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++-|.|..||||||||+
T Consensus 314 ~~~i~G~NGsGKSTLlk 330 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVK 330 (538)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 67899999999999974
No 149
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=92.86 E-value=0.017 Score=47.79 Aligned_cols=17 Identities=35% Similarity=0.436 Sum_probs=15.2
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 371 ~~~ivG~sGsGKSTll~ 387 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIAN 387 (582)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 67899999999999974
No 150
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=92.85 E-value=0.025 Score=41.40 Aligned_cols=16 Identities=44% Similarity=0.461 Sum_probs=14.6
Q ss_pred ceEEEecccCCCccCC
Q 033696 96 PATIITGFLGSGKNTG 111 (113)
Q Consensus 96 PvTIiTGfLGsGKtTL 111 (113)
.+++|+|..||||||+
T Consensus 30 ~~I~l~G~~GsGKsT~ 45 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQ 45 (243)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 4789999999999997
No 151
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=92.81 E-value=0.015 Score=42.04 Aligned_cols=17 Identities=29% Similarity=0.438 Sum_probs=16.0
Q ss_pred ceEEEecccCCCccCCC
Q 033696 96 PATIITGFLGSGKNTGS 112 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLL 112 (113)
++++|+|.-|.|||||+
T Consensus 32 ~~v~i~G~~G~GKT~Ll 48 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLL 48 (350)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCcCCHHHHH
Confidence 79999999999999986
No 152
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=92.80 E-value=0.014 Score=45.72 Aligned_cols=17 Identities=35% Similarity=0.407 Sum_probs=15.5
Q ss_pred ceEEEecccCCCccCCC
Q 033696 96 PATIITGFLGSGKNTGS 112 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLL 112 (113)
-+|.|.|..|||||||+
T Consensus 132 ~i~~I~G~~GsGKTTL~ 148 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLA 148 (349)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 38999999999999985
No 153
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.78 E-value=0.007 Score=40.95 Aligned_cols=21 Identities=19% Similarity=0.107 Sum_probs=17.0
Q ss_pred CCCceEEEecccCCCccCCCC
Q 033696 93 NRIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 93 ~riPvTIiTGfLGsGKtTLLn 113 (113)
+...=++|.|..|+|||||+|
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~ 41 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLF 41 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHH
T ss_pred CeeeEEEEECCCCcCHHHHHH
Confidence 345567889999999999975
No 154
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=92.78 E-value=0.0097 Score=50.40 Aligned_cols=17 Identities=35% Similarity=0.499 Sum_probs=15.3
Q ss_pred ceEEEecccCCCccCCC
Q 033696 96 PATIITGFLGSGKNTGS 112 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLL 112 (113)
-+++|+|+.|||||||+
T Consensus 370 ~iI~LiG~sGSGKSTLa 386 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLA 386 (552)
T ss_dssp EEEEEEESSCHHHHHHH
T ss_pred eEEEEECCCCChHHHHH
Confidence 47899999999999985
No 155
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=92.77 E-value=0.022 Score=37.75 Aligned_cols=19 Identities=32% Similarity=0.607 Sum_probs=15.9
Q ss_pred CCceEEEecccCCCccCCC
Q 033696 94 RIPATIITGFLGSGKNTGS 112 (113)
Q Consensus 94 riPvTIiTGfLGsGKtTLL 112 (113)
+.|..+|+|.-|+|||+|+
T Consensus 37 ~~~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 37 NIPHLLFSGPPGTGKTATA 55 (226)
T ss_dssp CCCCEEEECSTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4455899999999999974
No 156
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=92.70 E-value=0.014 Score=39.26 Aligned_cols=22 Identities=23% Similarity=0.187 Sum_probs=16.5
Q ss_pred CCCCceEEEecccCCCccCCCC
Q 033696 92 DNRIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 92 ~~riPvTIiTGfLGsGKtTLLn 113 (113)
..+..-.+|.|.-|+|||||+|
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~ 39 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIIN 39 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHH
T ss_pred CCCccEEEEECCCCCCHHHHHH
Confidence 3445667899999999999975
No 157
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=92.70 E-value=0.016 Score=49.34 Aligned_cols=17 Identities=35% Similarity=0.194 Sum_probs=15.3
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 384 i~~i~G~NGsGKSTLlk 400 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVK 400 (607)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 78899999999999974
No 158
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=92.70 E-value=0.014 Score=43.93 Aligned_cols=15 Identities=27% Similarity=0.426 Sum_probs=14.0
Q ss_pred EEEecccCCCccCCC
Q 033696 98 TIITGFLGSGKNTGS 112 (113)
Q Consensus 98 TIiTGfLGsGKtTLL 112 (113)
+++.|..|+|||||+
T Consensus 47 vlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLA 61 (274)
T ss_dssp EEEESSTTSCHHHHH
T ss_pred EEEECCCCCcHHHHH
Confidence 889999999999985
No 159
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=92.69 E-value=0.016 Score=39.61 Aligned_cols=26 Identities=19% Similarity=0.286 Sum_probs=16.4
Q ss_pred CCCCCCCCceEEEecccCCCccCCCC
Q 033696 88 KIPPDNRIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 88 ~~~~~~riPvTIiTGfLGsGKtTLLn 113 (113)
...+.++..=.+|.|..|+|||||+|
T Consensus 13 ~~~~~~~~~ki~~vG~~~vGKTsLi~ 38 (196)
T 3llu_A 13 NLYFQGSKPRILLMGLRRSGKSSIQK 38 (196)
T ss_dssp -------CCEEEEEESTTSSHHHHHH
T ss_pred CCcccCcceEEEEECCCCCCHHHHHH
Confidence 33445566677889999999999964
No 160
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=92.68 E-value=0.016 Score=49.32 Aligned_cols=18 Identities=33% Similarity=0.316 Sum_probs=15.9
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
=++.|.|..||||||||+
T Consensus 118 e~~~LiG~NGsGKSTLlk 135 (607)
T 3bk7_A 118 MVVGIVGPNGTGKTTAVK 135 (607)
T ss_dssp SEEEEECCTTSSHHHHHH
T ss_pred CEEEEECCCCChHHHHHH
Confidence 378899999999999974
No 161
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=92.63 E-value=0.015 Score=42.70 Aligned_cols=15 Identities=27% Similarity=0.410 Sum_probs=13.9
Q ss_pred EEEecccCCCccCCC
Q 033696 98 TIITGFLGSGKNTGS 112 (113)
Q Consensus 98 TIiTGfLGsGKtTLL 112 (113)
++|.|..|+|||||+
T Consensus 76 vll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLA 90 (278)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCcChHHHHH
Confidence 789999999999985
No 162
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=92.60 E-value=0.018 Score=45.96 Aligned_cols=26 Identities=23% Similarity=0.103 Sum_probs=18.0
Q ss_pred CCCCCCCCceEEEecccCCCccCCCC
Q 033696 88 KIPPDNRIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 88 ~~~~~~riPvTIiTGfLGsGKtTLLn 113 (113)
+..+.-+.|.++|.|..|+|||||+|
T Consensus 16 ~~~~~m~~~~V~lvG~~nvGKSTL~n 41 (456)
T 4dcu_A 16 PRGSHMGKPVVAIVGRPNVGKSTIFN 41 (456)
T ss_dssp -------CCEEEEECSSSSSHHHHHH
T ss_pred CChhhcCCCEEEEECCCCCcHHHHHH
Confidence 44445668999999999999999975
No 163
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=92.57 E-value=0.016 Score=47.43 Aligned_cols=21 Identities=24% Similarity=0.270 Sum_probs=18.5
Q ss_pred CCCceEEEecccCCCccCCCC
Q 033696 93 NRIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 93 ~riPvTIiTGfLGsGKtTLLn 113 (113)
+..+++.|.|+.|+|||||||
T Consensus 155 k~g~~VgLVG~~gAGKSTLL~ 175 (416)
T 1udx_A 155 MLIADVGLVGYPNAGKSSLLA 175 (416)
T ss_dssp CCSCSEEEECCGGGCHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHH
Confidence 457889999999999999975
No 164
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=92.57 E-value=0.017 Score=46.50 Aligned_cols=16 Identities=38% Similarity=0.580 Sum_probs=15.0
Q ss_pred eEEEecccCCCccCCC
Q 033696 97 ATIITGFLGSGKNTGS 112 (113)
Q Consensus 97 vTIiTGfLGsGKtTLL 112 (113)
|+.|.|..|||||||+
T Consensus 159 vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSL 174 (359)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCChHHHHH
Confidence 8889999999999986
No 165
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=92.55 E-value=0.014 Score=40.09 Aligned_cols=21 Identities=24% Similarity=0.137 Sum_probs=16.6
Q ss_pred CCCceEEEecccCCCccCCCC
Q 033696 93 NRIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 93 ~riPvTIiTGfLGsGKtTLLn 113 (113)
++..=++|.|..|+|||||+|
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~ 43 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLY 43 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHH
T ss_pred ceeEEEEEECcCCCCHHHHHH
Confidence 334557888999999999975
No 166
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=92.54 E-value=0.017 Score=49.34 Aligned_cols=17 Identities=29% Similarity=0.286 Sum_probs=15.6
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++-|.|..||||||||+
T Consensus 105 i~~LvGpNGaGKSTLLk 121 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALK 121 (608)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCChHHHHHH
Confidence 78999999999999974
No 167
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.52 E-value=0.016 Score=39.20 Aligned_cols=21 Identities=24% Similarity=0.271 Sum_probs=16.5
Q ss_pred CCCceEEEecccCCCccCCCC
Q 033696 93 NRIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 93 ~riPvTIiTGfLGsGKtTLLn 113 (113)
.+..-++|.|..|+|||||+|
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~ 38 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLV 38 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHH
T ss_pred CcceEEEEECCCCCCHHHHHH
Confidence 445678899999999999975
No 168
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=92.50 E-value=0.022 Score=47.46 Aligned_cols=17 Identities=35% Similarity=0.372 Sum_probs=15.2
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 383 ~~~ivG~sGsGKSTll~ 399 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVN 399 (598)
T ss_dssp EEEEECCTTSSTTHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 68899999999999964
No 169
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=92.49 E-value=0.018 Score=48.31 Aligned_cols=17 Identities=29% Similarity=0.161 Sum_probs=15.4
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
|+-|.|..||||||||+
T Consensus 27 i~gLiGpNGaGKSTLlk 43 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLK 43 (538)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 78899999999999974
No 170
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=92.47 E-value=0.014 Score=39.85 Aligned_cols=21 Identities=24% Similarity=0.327 Sum_probs=16.9
Q ss_pred CCCceEEEecccCCCccCCCC
Q 033696 93 NRIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 93 ~riPvTIiTGfLGsGKtTLLn 113 (113)
.+..-++|.|.-|+|||||+|
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~ 42 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAH 42 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHH
T ss_pred CCcEEEEEECCCCcCHHHHHH
Confidence 445567899999999999975
No 171
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=92.46 E-value=0.055 Score=43.11 Aligned_cols=18 Identities=33% Similarity=0.493 Sum_probs=15.8
Q ss_pred CCceEEEecccCCCccCC
Q 033696 94 RIPATIITGFLGSGKNTG 111 (113)
Q Consensus 94 riPvTIiTGfLGsGKtTL 111 (113)
+-.++||+|+.||||||+
T Consensus 257 ~~~lIil~G~pGSGKSTl 274 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTF 274 (416)
T ss_dssp SCCEEEEESCTTSSHHHH
T ss_pred CCEEEEEECCCCCCHHHH
Confidence 346889999999999997
No 172
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=92.46 E-value=0.018 Score=48.27 Aligned_cols=17 Identities=35% Similarity=0.188 Sum_probs=15.3
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++-|.|..||||||||+
T Consensus 296 i~~i~G~nGsGKSTLl~ 312 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFAR 312 (538)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 78899999999999964
No 173
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=92.43 E-value=0.021 Score=47.50 Aligned_cols=21 Identities=24% Similarity=0.099 Sum_probs=17.2
Q ss_pred CCCceEEEecccCCCccCCCC
Q 033696 93 NRIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 93 ~riPvTIiTGfLGsGKtTLLn 113 (113)
..+|-+.|.|..|+|||||||
T Consensus 40 Gei~~vaLvG~nGaGKSTLln 60 (427)
T 2qag_B 40 GFCFNILCVGETGLGKSTLMD 60 (427)
T ss_dssp CCEEEEEEECSTTSSSHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHH
Confidence 334558899999999999975
No 174
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=92.36 E-value=0.013 Score=39.82 Aligned_cols=20 Identities=25% Similarity=0.223 Sum_probs=15.9
Q ss_pred CCceEEEecccCCCccCCCC
Q 033696 94 RIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 94 riPvTIiTGfLGsGKtTLLn 113 (113)
+..=++|.|..|+|||||+|
T Consensus 22 ~~~ki~vvG~~~~GKSsli~ 41 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVC 41 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHH
T ss_pred CceEEEEECcCCCCHHHHHH
Confidence 33456788999999999975
No 175
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.32 E-value=0.022 Score=42.95 Aligned_cols=20 Identities=25% Similarity=0.514 Sum_probs=17.5
Q ss_pred CCCceEEEecccCCCccCCC
Q 033696 93 NRIPATIITGFLGSGKNTGS 112 (113)
Q Consensus 93 ~riPvTIiTGfLGsGKtTLL 112 (113)
.++|-.+++|..|+|||||+
T Consensus 44 g~~~~~ll~Gp~G~GKTtla 63 (340)
T 1sxj_C 44 GKLPHLLFYGPPGTGKTSTI 63 (340)
T ss_dssp TCCCCEEEECSSSSSHHHHH
T ss_pred CCCceEEEECCCCCCHHHHH
Confidence 46778999999999999984
No 176
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=92.31 E-value=0.018 Score=47.62 Aligned_cols=17 Identities=35% Similarity=0.464 Sum_probs=15.2
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++-|.|..||||||||+
T Consensus 371 ~~~ivG~sGsGKSTLl~ 387 (582)
T 3b60_A 371 TVALVGRSGSGKSTIAS 387 (582)
T ss_dssp EEEEEECTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 67899999999999964
No 177
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=92.27 E-value=0.02 Score=48.25 Aligned_cols=18 Identities=39% Similarity=0.431 Sum_probs=16.2
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|.|..||||||||+
T Consensus 30 e~~~liG~nGsGKSTLl~ 47 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMA 47 (483)
T ss_dssp SEEEEECCTTSSHHHHHH
T ss_pred ceEEEECCCCCcHHHHHH
Confidence 688999999999999974
No 178
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=92.25 E-value=0.016 Score=39.47 Aligned_cols=19 Identities=32% Similarity=0.282 Sum_probs=15.5
Q ss_pred CceEEEecccCCCccCCCC
Q 033696 95 IPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 95 iPvTIiTGfLGsGKtTLLn 113 (113)
..=++|.|..|+|||||+|
T Consensus 26 ~~ki~vvG~~~~GKSsLi~ 44 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLME 44 (192)
T ss_dssp EEEEEEECSTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 3446788999999999975
No 179
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=92.23 E-value=0.009 Score=47.14 Aligned_cols=17 Identities=29% Similarity=0.407 Sum_probs=16.0
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..|+|||||||
T Consensus 175 ~~~lvG~sG~GKSTLln 191 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLN 191 (307)
T ss_dssp EEEEEESHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 89999999999999986
No 180
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=92.18 E-value=0.017 Score=38.97 Aligned_cols=19 Identities=32% Similarity=0.230 Sum_probs=15.5
Q ss_pred CceEEEecccCCCccCCCC
Q 033696 95 IPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 95 iPvTIiTGfLGsGKtTLLn 113 (113)
.-=++|.|.-|+|||||+|
T Consensus 21 ~~ki~v~G~~~~GKSsli~ 39 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLL 39 (191)
T ss_dssp EEEEEEESSTTSSHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHH
Confidence 3446788999999999974
No 181
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=92.18 E-value=0.031 Score=38.77 Aligned_cols=15 Identities=40% Similarity=0.545 Sum_probs=14.5
Q ss_pred eEEEecccCCCccCC
Q 033696 97 ATIITGFLGSGKNTG 111 (113)
Q Consensus 97 vTIiTGfLGsGKtTL 111 (113)
+|+|+|..|+|||+|
T Consensus 32 l~~i~G~pG~GKT~l 46 (251)
T 2zts_A 32 TVLLTGGTGTGKTTF 46 (251)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEEeCCCCCHHHH
Confidence 899999999999997
No 182
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=92.16 E-value=0.015 Score=47.32 Aligned_cols=16 Identities=31% Similarity=0.285 Sum_probs=15.5
Q ss_pred eEEEecccCCCccCCC
Q 033696 97 ATIITGFLGSGKNTGS 112 (113)
Q Consensus 97 vTIiTGfLGsGKtTLL 112 (113)
+++|+|..||||||||
T Consensus 62 ~n~i~G~NGaGKS~ll 77 (517)
T 4ad8_A 62 FCAFTGETGAGKSIIV 77 (517)
T ss_dssp EEEEEESHHHHHHHHT
T ss_pred eEEEEcCCCCCHHHHH
Confidence 9999999999999997
No 183
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=92.14 E-value=0.022 Score=41.63 Aligned_cols=19 Identities=26% Similarity=0.412 Sum_probs=16.4
Q ss_pred CCceEEEecccCCCccCCC
Q 033696 94 RIPATIITGFLGSGKNTGS 112 (113)
Q Consensus 94 riPvTIiTGfLGsGKtTLL 112 (113)
.-..++|+|.-|+|||||+
T Consensus 44 ~~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCCEEEEECTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3457899999999999985
No 184
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=92.10 E-value=0.018 Score=38.93 Aligned_cols=20 Identities=25% Similarity=0.130 Sum_probs=16.1
Q ss_pred CCceEEEecccCCCccCCCC
Q 033696 94 RIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 94 riPvTIiTGfLGsGKtTLLn 113 (113)
+..-++|.|.-|+|||||+|
T Consensus 21 ~~~ki~v~G~~~~GKSsli~ 40 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVN 40 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHH
Confidence 34456889999999999975
No 185
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=92.08 E-value=0.02 Score=41.15 Aligned_cols=21 Identities=24% Similarity=0.362 Sum_probs=17.1
Q ss_pred CCCceEEEecccCCCccCCCC
Q 033696 93 NRIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 93 ~riPvTIiTGfLGsGKtTLLn 113 (113)
.+..-++|.|..|+|||||+|
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n 40 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGN 40 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHH
Confidence 445678899999999999975
No 186
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=92.07 E-value=0.021 Score=48.77 Aligned_cols=18 Identities=28% Similarity=0.305 Sum_probs=15.7
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
=|+.|.|..||||||||+
T Consensus 379 Eiv~iiG~NGsGKSTLlk 396 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIK 396 (608)
T ss_dssp CEEEEESCTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 368899999999999974
No 187
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=92.02 E-value=0.018 Score=39.61 Aligned_cols=20 Identities=20% Similarity=0.203 Sum_probs=16.0
Q ss_pred CCceEEEecccCCCccCCCC
Q 033696 94 RIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 94 riPvTIiTGfLGsGKtTLLn 113 (113)
+..=++|.|..|+|||||+|
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~ 43 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLH 43 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHH
Confidence 34456788999999999975
No 188
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.01 E-value=0.019 Score=38.96 Aligned_cols=18 Identities=28% Similarity=0.211 Sum_probs=15.0
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
.=++|.|..|+|||||+|
T Consensus 29 ~ki~v~G~~~vGKSsli~ 46 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVV 46 (196)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 346788999999999974
No 189
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=92.00 E-value=0.022 Score=38.28 Aligned_cols=20 Identities=15% Similarity=0.056 Sum_probs=16.3
Q ss_pred CCceEEEecccCCCccCCCC
Q 033696 94 RIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 94 riPvTIiTGfLGsGKtTLLn 113 (113)
...-++|.|..|+|||||+|
T Consensus 21 ~~~ki~vvG~~~~GKSsli~ 40 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLF 40 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHH
T ss_pred ceeEEEEECCCCCCHHHHHH
Confidence 34557888999999999975
No 190
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=91.98 E-value=0.022 Score=45.18 Aligned_cols=16 Identities=38% Similarity=0.378 Sum_probs=14.6
Q ss_pred eEEEecccCCCccCCC
Q 033696 97 ATIITGFLGSGKNTGS 112 (113)
Q Consensus 97 vTIiTGfLGsGKtTLL 112 (113)
|+-|.|..|||||||+
T Consensus 94 iigI~GpsGSGKSTl~ 109 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTS 109 (321)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6789999999999985
No 191
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=91.94 E-value=0.028 Score=47.17 Aligned_cols=17 Identities=35% Similarity=0.604 Sum_probs=15.1
Q ss_pred ceEEEecccCCCccCCC
Q 033696 96 PATIITGFLGSGKNTGS 112 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLL 112 (113)
-++-|.|..||||||||
T Consensus 45 e~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 45 KLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHh
Confidence 37889999999999995
No 192
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=91.20 E-value=0.029 Score=38.24 Aligned_cols=19 Identities=16% Similarity=0.031 Sum_probs=15.5
Q ss_pred CceEEEecccCCCccCCCC
Q 033696 95 IPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 95 iPvTIiTGfLGsGKtTLLn 113 (113)
.--++|.|.-|+|||||+|
T Consensus 30 ~~ki~v~G~~~~GKSsli~ 48 (204)
T 3th5_A 30 AIKCVVVGDGAVGKTCLLI 48 (204)
Confidence 3346788999999999985
No 193
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=91.76 E-value=0.034 Score=40.78 Aligned_cols=19 Identities=32% Similarity=0.190 Sum_probs=15.8
Q ss_pred CCceEEEecccCCCccCCC
Q 033696 94 RIPATIITGFLGSGKNTGS 112 (113)
Q Consensus 94 riPvTIiTGfLGsGKtTLL 112 (113)
+--+++|.|..||||||++
T Consensus 25 ~g~~i~i~G~~GsGKsT~~ 43 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVI 43 (229)
T ss_dssp CCEEEEEECCTTSCHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHH
Confidence 3447889999999999984
No 194
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=91.70 E-value=0.021 Score=38.48 Aligned_cols=20 Identities=15% Similarity=0.071 Sum_probs=15.9
Q ss_pred CCceEEEecccCCCccCCCC
Q 033696 94 RIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 94 riPvTIiTGfLGsGKtTLLn 113 (113)
+.-=++|.|..|+|||||+|
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~ 41 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLL 41 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHH
T ss_pred eeeEEEEECcCCCCHHHHHH
Confidence 33446789999999999975
No 195
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=91.64 E-value=0.026 Score=48.29 Aligned_cols=17 Identities=29% Similarity=0.481 Sum_probs=15.3
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
|+.|.|..||||||||+
T Consensus 295 VI~LVGpNGSGKTTLl~ 311 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTIG 311 (503)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCcccHHHHHH
Confidence 88899999999999863
No 196
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=91.61 E-value=0.022 Score=38.90 Aligned_cols=19 Identities=32% Similarity=0.165 Sum_probs=15.5
Q ss_pred CceEEEecccCCCccCCCC
Q 033696 95 IPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 95 iPvTIiTGfLGsGKtTLLn 113 (113)
--=++|.|..|+|||||+|
T Consensus 20 ~~ki~ivG~~~vGKSsL~~ 38 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVH 38 (184)
T ss_dssp EEEEEEECCTTSCHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHH
Confidence 3456788999999999974
No 197
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=91.56 E-value=0.044 Score=44.48 Aligned_cols=18 Identities=22% Similarity=0.361 Sum_probs=16.0
Q ss_pred CCceEEEecccCCCccCC
Q 033696 94 RIPATIITGFLGSGKNTG 111 (113)
Q Consensus 94 riPvTIiTGfLGsGKtTL 111 (113)
+-+++||.|+.|+|||||
T Consensus 39 ~~~lIvI~GPTgsGKTtL 56 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRL 56 (339)
T ss_dssp CCEEEEEECSTTSSHHHH
T ss_pred CCceEEEECCCCCCHHHH
Confidence 446999999999999997
No 198
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=91.48 E-value=0.035 Score=38.17 Aligned_cols=17 Identities=24% Similarity=0.270 Sum_probs=14.7
Q ss_pred ceEEEecccCCCccCCC
Q 033696 96 PATIITGFLGSGKNTGS 112 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLL 112 (113)
..++|+|..|+|||+|+
T Consensus 55 ~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 46788999999999984
No 199
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=91.43 E-value=0.028 Score=46.87 Aligned_cols=17 Identities=35% Similarity=0.337 Sum_probs=15.0
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..|||||||++
T Consensus 371 ~~~ivG~sGsGKSTll~ 387 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMN 387 (587)
T ss_dssp EEEEECSSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 67899999999999964
No 200
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=91.37 E-value=0.046 Score=35.69 Aligned_cols=18 Identities=28% Similarity=0.244 Sum_probs=14.9
Q ss_pred CceEEEecccCCCccCCC
Q 033696 95 IPATIITGFLGSGKNTGS 112 (113)
Q Consensus 95 iPvTIiTGfLGsGKtTLL 112 (113)
-+..+|+|.-|+|||+|+
T Consensus 43 ~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp SCEEEEESCGGGCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 345599999999999974
No 201
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=91.34 E-value=0.027 Score=40.76 Aligned_cols=20 Identities=25% Similarity=0.285 Sum_probs=16.4
Q ss_pred CCceEEEecccCCCccCCCC
Q 033696 94 RIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 94 riPvTIiTGfLGsGKtTLLn 113 (113)
...=++|.|..|+|||||+|
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~ 55 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLAN 55 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHH
Confidence 34457899999999999975
No 202
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=91.33 E-value=0.025 Score=40.61 Aligned_cols=15 Identities=27% Similarity=0.437 Sum_probs=13.6
Q ss_pred EEEecccCCCccCCC
Q 033696 98 TIITGFLGSGKNTGS 112 (113)
Q Consensus 98 TIiTGfLGsGKtTLL 112 (113)
++|+|..|+|||||+
T Consensus 48 vll~G~~GtGKT~la 62 (257)
T 1lv7_A 48 VLMVGPPGTGKTLLA 62 (257)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEECcCCCCHHHHH
Confidence 789999999999984
No 203
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=91.32 E-value=0.022 Score=38.11 Aligned_cols=20 Identities=20% Similarity=0.210 Sum_probs=16.3
Q ss_pred CCceEEEecccCCCccCCCC
Q 033696 94 RIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 94 riPvTIiTGfLGsGKtTLLn 113 (113)
+..-.+|.|.-|+|||||+|
T Consensus 21 ~~~~i~v~G~~~~GKssli~ 40 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILY 40 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHH
Confidence 33457889999999999974
No 204
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=91.23 E-value=0.035 Score=42.75 Aligned_cols=18 Identities=28% Similarity=0.340 Sum_probs=15.7
Q ss_pred CceEEEecccCCCccCCC
Q 033696 95 IPATIITGFLGSGKNTGS 112 (113)
Q Consensus 95 iPvTIiTGfLGsGKtTLL 112 (113)
--|+++.|..|+||||++
T Consensus 105 g~vi~lvG~~GsGKTTl~ 122 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTL 122 (296)
T ss_dssp SSEEEEEESTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 348999999999999984
No 205
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=91.18 E-value=0.038 Score=43.17 Aligned_cols=17 Identities=29% Similarity=0.518 Sum_probs=15.1
Q ss_pred ceEEEecccCCCccCCC
Q 033696 96 PATIITGFLGSGKNTGS 112 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLL 112 (113)
-|+.|+|..|+||||++
T Consensus 105 ~vi~ivG~~GsGKTTl~ 121 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSC 121 (306)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEEcCCCChHHHHH
Confidence 48889999999999984
No 206
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=91.10 E-value=0.025 Score=38.66 Aligned_cols=18 Identities=22% Similarity=0.202 Sum_probs=15.5
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
.-+++.|..|+|||||+|
T Consensus 24 ~ki~~vG~~~vGKSsli~ 41 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLH 41 (190)
T ss_dssp CEEEEEESTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 457899999999999974
No 207
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=91.08 E-value=0.025 Score=39.10 Aligned_cols=17 Identities=24% Similarity=0.251 Sum_probs=14.8
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
-+++.|..|+|||||+|
T Consensus 27 ki~lvG~~~vGKSsLi~ 43 (198)
T 1f6b_A 27 KLVFLGLDNAGKTTLLH 43 (198)
T ss_dssp EEEEEEETTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46889999999999974
No 208
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=91.07 E-value=0.03 Score=45.65 Aligned_cols=16 Identities=31% Similarity=0.372 Sum_probs=15.1
Q ss_pred eEEEecccCCCccCCC
Q 033696 97 ATIITGFLGSGKNTGS 112 (113)
Q Consensus 97 vTIiTGfLGsGKtTLL 112 (113)
++.|.|..|+|||||+
T Consensus 283 i~~i~G~~GsGKSTLl 298 (525)
T 1tf7_A 283 IILATGATGTGKTLLV 298 (525)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEEeCCCCCHHHHH
Confidence 8999999999999996
No 209
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=91.06 E-value=0.027 Score=38.28 Aligned_cols=17 Identities=29% Similarity=0.348 Sum_probs=14.6
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
=++|.|.-|+|||||+|
T Consensus 23 ki~vvG~~~vGKTsLi~ 39 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTV 39 (187)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 46788999999999974
No 210
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=91.06 E-value=0.03 Score=38.18 Aligned_cols=21 Identities=14% Similarity=0.154 Sum_probs=16.1
Q ss_pred CCCceEEEecccCCCccCCCC
Q 033696 93 NRIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 93 ~riPvTIiTGfLGsGKtTLLn 113 (113)
++..-++|.|.-|+|||||+|
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~ 46 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLM 46 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHH
T ss_pred CCCeEEEEECcCCCCHHHHHH
Confidence 344567889999999999975
No 211
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=91.00 E-value=0.03 Score=37.79 Aligned_cols=21 Identities=19% Similarity=0.121 Sum_probs=15.7
Q ss_pred CCCceEEEecccCCCccCCCC
Q 033696 93 NRIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 93 ~riPvTIiTGfLGsGKtTLLn 113 (113)
.+..-++|.|.-|+|||||+|
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~ 38 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVV 38 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHH
T ss_pred CcceEEEEECCCCCCHHHHHH
Confidence 344557788999999999974
No 212
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.99 E-value=0.026 Score=38.81 Aligned_cols=17 Identities=18% Similarity=0.106 Sum_probs=14.8
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
-++|.|.-|+|||||+|
T Consensus 27 ki~vvG~~~~GKSsli~ 43 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLI 43 (207)
T ss_dssp EEEEEECTTSSHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 46889999999999974
No 213
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.99 E-value=0.025 Score=39.65 Aligned_cols=21 Identities=19% Similarity=0.224 Sum_probs=17.2
Q ss_pred CCCceEEEecccCCCccCCCC
Q 033696 93 NRIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 93 ~riPvTIiTGfLGsGKtTLLn 113 (113)
.+..-++|.|..|+|||||+|
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~ 44 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVR 44 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHH
T ss_pred ccceEEEEECcCCCCHHHHHH
Confidence 345567899999999999974
No 214
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=90.97 E-value=0.053 Score=48.52 Aligned_cols=17 Identities=47% Similarity=0.548 Sum_probs=15.7
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++-|+|..|||||||++
T Consensus 525 iv~I~G~nGSGKSTLl~ 541 (842)
T 2vf7_A 525 MTSVTGVSGSGKSTLVS 541 (842)
T ss_dssp EEEEECCTTSSHHHHCC
T ss_pred EEEEEcCCCcCHHHHHH
Confidence 78899999999999985
No 215
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=90.87 E-value=0.04 Score=44.72 Aligned_cols=16 Identities=25% Similarity=0.235 Sum_probs=15.2
Q ss_pred eEEEecccCCCccCCC
Q 033696 97 ATIITGFLGSGKNTGS 112 (113)
Q Consensus 97 vTIiTGfLGsGKtTLL 112 (113)
++.|.|..|+|||||+
T Consensus 180 i~~I~G~sGsGKTTLl 195 (400)
T 3lda_A 180 ITELFGEFRTGKSQLC 195 (400)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEEcCCCCChHHHH
Confidence 8999999999999985
No 216
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=90.87 E-value=0.051 Score=45.67 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=20.8
Q ss_pred CCCCCCCceEEEecccCCCccCCC
Q 033696 89 IPPDNRIPATIITGFLGSGKNTGS 112 (113)
Q Consensus 89 ~~~~~riPvTIiTGfLGsGKtTLL 112 (113)
+..+....|++|.|+-|+||||++
T Consensus 155 ~~~~~~~~v~~I~G~aGsGKTt~I 178 (446)
T 3vkw_A 155 EPHVSSAKVVLVDGVPGCGKTKEI 178 (446)
T ss_dssp BCCCCCSEEEEEEECTTSCHHHHH
T ss_pred ccccccccEEEEEcCCCCCHHHHH
Confidence 355678899999999999999975
No 217
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=90.82 E-value=0.028 Score=38.50 Aligned_cols=19 Identities=21% Similarity=0.177 Sum_probs=15.8
Q ss_pred CceEEEecccCCCccCCCC
Q 033696 95 IPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 95 iPvTIiTGfLGsGKtTLLn 113 (113)
..-++|.|.-|+|||||+|
T Consensus 29 ~~ki~v~G~~~vGKSsLi~ 47 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILY 47 (192)
T ss_dssp CEEEEEEESTTSSHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHH
Confidence 3457889999999999974
No 218
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=90.71 E-value=0.039 Score=40.46 Aligned_cols=20 Identities=20% Similarity=0.493 Sum_probs=16.7
Q ss_pred CCCceEEEecccCCCccCCC
Q 033696 93 NRIPATIITGFLGSGKNTGS 112 (113)
Q Consensus 93 ~riPvTIiTGfLGsGKtTLL 112 (113)
..-+.++|+|..|+|||||+
T Consensus 42 ~~~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHH
Confidence 34567899999999999985
No 219
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.70 E-value=0.042 Score=40.30 Aligned_cols=19 Identities=26% Similarity=0.504 Sum_probs=16.2
Q ss_pred CCceEEEecccCCCccCCC
Q 033696 94 RIPATIITGFLGSGKNTGS 112 (113)
Q Consensus 94 riPvTIiTGfLGsGKtTLL 112 (113)
++|..+++|..|+|||||+
T Consensus 57 ~~~~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 57 NLPHMLFYGPPGTGKTSTI 75 (353)
T ss_dssp TCCCEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4566899999999999984
No 220
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=90.66 E-value=0.045 Score=39.25 Aligned_cols=17 Identities=41% Similarity=0.565 Sum_probs=14.7
Q ss_pred ceEEEecccCCCccCCC
Q 033696 96 PATIITGFLGSGKNTGS 112 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLL 112 (113)
-.+++.|..||||||++
T Consensus 77 ~~~~i~g~TGsGKTt~~ 93 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQV 93 (235)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CEEEEEeCCCCCcHHhH
Confidence 37899999999999863
No 221
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=90.55 E-value=0.0055 Score=46.24 Aligned_cols=18 Identities=39% Similarity=0.431 Sum_probs=15.4
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-++.|.|..||||||||+
T Consensus 28 ~~~~i~GpnGsGKSTll~ 45 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMA 45 (227)
T ss_dssp HHHHHHSCCSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 367899999999999963
No 222
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=90.54 E-value=0.16 Score=41.46 Aligned_cols=23 Identities=13% Similarity=0.043 Sum_probs=18.4
Q ss_pred CCCCCceEEEecccCCCccCCCC
Q 033696 91 PDNRIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 91 ~~~riPvTIiTGfLGsGKtTLLn 113 (113)
+....+-.+|.|.-|+|||||+|
T Consensus 30 ~~~~~~kI~IvG~~~vGKSTLin 52 (423)
T 3qq5_A 30 DAGFRRYIVVAGRRNVGKSSFMN 52 (423)
T ss_dssp --CCCEEEEEECSCSTTTTTTTT
T ss_pred CCCCCEEEEEECCCCCCHHHHHH
Confidence 34556778899999999999986
No 223
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=90.40 E-value=0.044 Score=40.75 Aligned_cols=19 Identities=26% Similarity=0.286 Sum_probs=16.0
Q ss_pred CCceEEEecccCCCccCCC
Q 033696 94 RIPATIITGFLGSGKNTGS 112 (113)
Q Consensus 94 riPvTIiTGfLGsGKtTLL 112 (113)
.-+..+|+|..|+|||||+
T Consensus 36 ~~~~lll~G~~GtGKT~la 54 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLL 54 (324)
T ss_dssp SCSSEEEECSSSSSHHHHH
T ss_pred CCCeEEEECCCCCcHHHHH
Confidence 3456789999999999985
No 224
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=90.33 E-value=0.033 Score=38.16 Aligned_cols=17 Identities=24% Similarity=0.124 Sum_probs=14.4
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
=++|.|.-|+|||||+|
T Consensus 27 ki~vvG~~~~GKSsli~ 43 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLI 43 (201)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 35788999999999974
No 225
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=90.15 E-value=0.035 Score=38.65 Aligned_cols=17 Identities=24% Similarity=0.286 Sum_probs=14.5
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
-++|.|.-|+|||||+|
T Consensus 36 ki~vvG~~~vGKSsli~ 52 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLM 52 (214)
T ss_dssp EEEEEECTTSSHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 46788999999999974
No 226
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=90.11 E-value=0.043 Score=44.31 Aligned_cols=16 Identities=31% Similarity=0.327 Sum_probs=14.9
Q ss_pred eEEEecccCCCccCCC
Q 033696 97 ATIITGFLGSGKNTGS 112 (113)
Q Consensus 97 vTIiTGfLGsGKtTLL 112 (113)
++.|.|..|+|||||+
T Consensus 171 ~i~l~G~~GsGKSTl~ 186 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLA 186 (377)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 8899999999999985
No 227
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=90.08 E-value=0.039 Score=40.48 Aligned_cols=17 Identities=29% Similarity=0.491 Sum_probs=14.7
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
-++|.|..|+|||||+|
T Consensus 23 ~I~lvG~~g~GKSSlin 39 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGN 39 (247)
T ss_dssp EEEEESSTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 35788999999999976
No 228
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=90.05 E-value=0.045 Score=50.06 Aligned_cols=17 Identities=35% Similarity=0.194 Sum_probs=15.2
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 463 ~v~LiGpNGsGKSTLLk 479 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMR 479 (986)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 67899999999999974
No 229
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=89.83 E-value=0.038 Score=38.17 Aligned_cols=17 Identities=18% Similarity=0.065 Sum_probs=14.6
Q ss_pred ceEEEecccCCCccCCC
Q 033696 96 PATIITGFLGSGKNTGS 112 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLL 112 (113)
--++|.|..|+|||||+
T Consensus 31 ~ki~vvG~~~~GKSsLi 47 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLL 47 (204)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred EEEEEECcCCCCHHHHH
Confidence 34678999999999997
No 230
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=89.79 E-value=0.039 Score=38.66 Aligned_cols=18 Identities=17% Similarity=0.091 Sum_probs=15.0
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-=++|.|.-|+|||||+|
T Consensus 29 ~ki~vvG~~~vGKSsLi~ 46 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLH 46 (205)
T ss_dssp EEEEEEESTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 346788999999999974
No 231
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=89.79 E-value=0.035 Score=38.30 Aligned_cols=21 Identities=14% Similarity=0.126 Sum_probs=16.8
Q ss_pred CCCceEEEecccCCCccCCCC
Q 033696 93 NRIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 93 ~riPvTIiTGfLGsGKtTLLn 113 (113)
.+..-++|.|.-|+|||||+|
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~ 47 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQ 47 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHH
T ss_pred ccceEEEEECcCCCCHHHHHH
Confidence 344567888999999999974
No 232
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=89.67 E-value=0.064 Score=49.25 Aligned_cols=17 Identities=47% Similarity=0.511 Sum_probs=15.6
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|+|..|||||||++
T Consensus 670 ivaI~G~nGSGKSTLl~ 686 (993)
T 2ygr_A 670 LTSVTGVSGSGKSTLVN 686 (993)
T ss_dssp EEEEECSTTSSHHHHHT
T ss_pred EEEEEcCCCCCHHHHHH
Confidence 78899999999999975
No 233
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=89.63 E-value=0.057 Score=41.55 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=19.4
Q ss_pred CCCCceEEEecccCCCccCCCC
Q 033696 92 DNRIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 92 ~~riPvTIiTGfLGsGKtTLLn 113 (113)
+...|-++|.|.-|+|||||||
T Consensus 28 ~~~~~~I~vvG~~~~GKSSLln 49 (353)
T 2x2e_A 28 DLDLPQIAVVGGQSAGKSSVLE 49 (353)
T ss_dssp GCCCCEEEEECBTTSSHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHH
Confidence 4567999999999999999976
No 234
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=89.58 E-value=0.048 Score=43.08 Aligned_cols=20 Identities=25% Similarity=0.295 Sum_probs=17.9
Q ss_pred CCceEEEecccCCCccCCCC
Q 033696 94 RIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 94 riPvTIiTGfLGsGKtTLLn 113 (113)
-+|-+.|.|+.++|||||||
T Consensus 157 ~la~V~lvG~~nvGKSTLln 176 (342)
T 1lnz_A 157 VLADVGLVGFPSVGKSTLLS 176 (342)
T ss_dssp CCCCEEEESSTTSSHHHHHH
T ss_pred hcCeeeeeCCCCCCHHHHHH
Confidence 37889999999999999975
No 235
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=89.43 E-value=0.048 Score=42.13 Aligned_cols=20 Identities=20% Similarity=0.109 Sum_probs=17.5
Q ss_pred CCceEEEecccCCCccCCCC
Q 033696 94 RIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 94 riPvTIiTGfLGsGKtTLLn 113 (113)
.-+-++|.|..|||||||++
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~ 53 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAK 53 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHH
Confidence 56789999999999999863
No 236
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=89.37 E-value=0.05 Score=43.09 Aligned_cols=17 Identities=29% Similarity=0.044 Sum_probs=14.8
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++-|.|..|+||||||+
T Consensus 73 ~~gIiG~nGaGKTTLl~ 89 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLG 89 (347)
T ss_dssp EEEEEECTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 56789999999999963
No 237
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=89.34 E-value=0.055 Score=45.47 Aligned_cols=17 Identities=35% Similarity=0.532 Sum_probs=15.8
Q ss_pred ceEEEecccCCCccCCC
Q 033696 96 PATIITGFLGSGKNTGS 112 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLL 112 (113)
++.||+|..|+||||++
T Consensus 205 ~~~~I~G~pGTGKTt~i 221 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTT 221 (574)
T ss_dssp SEEEEECCTTSCHHHHH
T ss_pred CEEEEEcCCCCCHHHHH
Confidence 79999999999999975
No 238
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=89.32 E-value=0.08 Score=43.97 Aligned_cols=16 Identities=19% Similarity=0.328 Sum_probs=14.4
Q ss_pred ceEEEecccCCCccCC
Q 033696 96 PATIITGFLGSGKNTG 111 (113)
Q Consensus 96 PvTIiTGfLGsGKtTL 111 (113)
-++|+.|+.||||||+
T Consensus 36 ~lIvlvGlpGSGKSTi 51 (520)
T 2axn_A 36 TVIVMVGLPARGKTYI 51 (520)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3788999999999996
No 239
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=89.28 E-value=0.099 Score=42.88 Aligned_cols=20 Identities=40% Similarity=0.421 Sum_probs=17.4
Q ss_pred CCCceEEEecccCCCccCCC
Q 033696 93 NRIPATIITGFLGSGKNTGS 112 (113)
Q Consensus 93 ~riPvTIiTGfLGsGKtTLL 112 (113)
..+|.++|.|+.|+||||+.
T Consensus 22 g~~~~i~l~G~~G~GKTTl~ 41 (359)
T 2ga8_A 22 NYRVCVILVGSPGSGKSTIA 41 (359)
T ss_dssp CSCEEEEEECCTTSSHHHHH
T ss_pred CCeeEEEEECCCCCcHHHHH
Confidence 45788999999999999973
No 240
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=89.02 E-value=0.064 Score=49.20 Aligned_cols=17 Identities=41% Similarity=0.460 Sum_probs=15.5
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|+|..|||||||++
T Consensus 652 iv~I~G~nGSGKSTLl~ 668 (972)
T 2r6f_A 652 FVAVTGVSGSGKSTLVN 668 (972)
T ss_dssp EEECCBCTTSSHHHHHT
T ss_pred EEEEEcCCCCCHHHHHH
Confidence 68899999999999975
No 241
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=89.00 E-value=0.055 Score=44.20 Aligned_cols=17 Identities=18% Similarity=-0.029 Sum_probs=14.9
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++-|.|..|+||||||+
T Consensus 159 ~~~IvG~sGsGKSTLl~ 175 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLG 175 (438)
T ss_dssp EEEEEECTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 57789999999999974
No 242
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=88.91 E-value=0.09 Score=42.22 Aligned_cols=16 Identities=25% Similarity=0.345 Sum_probs=14.3
Q ss_pred eEEEecccCCCccCCC
Q 033696 97 ATIITGFLGSGKNTGS 112 (113)
Q Consensus 97 vTIiTGfLGsGKtTLL 112 (113)
++|+.|+.||||||+.
T Consensus 41 ~IvlvGlpGsGKSTia 56 (469)
T 1bif_A 41 LIVMVGLPARGKTYIS 56 (469)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6889999999999973
No 243
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=88.86 E-value=0.076 Score=41.50 Aligned_cols=19 Identities=32% Similarity=0.559 Sum_probs=15.9
Q ss_pred CCceEEEecccCCCccCCC
Q 033696 94 RIPATIITGFLGSGKNTGS 112 (113)
Q Consensus 94 riPvTIiTGfLGsGKtTLL 112 (113)
+--++.|+|..|+||||++
T Consensus 104 ~~~vI~ivG~~G~GKTT~~ 122 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSL 122 (320)
T ss_dssp SCEEEEEESSTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3458889999999999974
No 244
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=88.78 E-value=0.041 Score=50.33 Aligned_cols=17 Identities=29% Similarity=0.290 Sum_probs=15.3
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++.|.|..||||||||+
T Consensus 701 ivaIiGpNGSGKSTLLk 717 (986)
T 2iw3_A 701 RIAVIGPNGAGKSTLIN 717 (986)
T ss_dssp EEEECSCCCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 67899999999999974
No 245
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=88.78 E-value=0.076 Score=42.17 Aligned_cols=21 Identities=24% Similarity=0.094 Sum_probs=17.7
Q ss_pred CCCceEEEecccCCCccCCCC
Q 033696 93 NRIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 93 ~riPvTIiTGfLGsGKtTLLn 113 (113)
...+-++|.|..|+|||||||
T Consensus 178 ~~~~kvaivG~~gvGKSTLln 198 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFN 198 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHH
T ss_pred ccCceEEEECCCCCCHHHHHH
Confidence 345678899999999999976
No 246
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=88.73 E-value=0.074 Score=42.77 Aligned_cols=16 Identities=38% Similarity=0.243 Sum_probs=15.1
Q ss_pred eEEEecccCCCccCCC
Q 033696 97 ATIITGFLGSGKNTGS 112 (113)
Q Consensus 97 vTIiTGfLGsGKtTLL 112 (113)
++.|.|..|+|||||+
T Consensus 63 i~~I~GppGsGKSTLa 78 (356)
T 3hr8_A 63 IVEIFGQESSGKTTLA 78 (356)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 9999999999999984
No 247
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=88.66 E-value=0.054 Score=44.31 Aligned_cols=15 Identities=33% Similarity=0.388 Sum_probs=13.7
Q ss_pred EEecccCCCccCCCC
Q 033696 99 IITGFLGSGKNTGSA 113 (113)
Q Consensus 99 IiTGfLGsGKtTLLn 113 (113)
+|.|..|+|||||||
T Consensus 35 ~lvG~sGaGKSTLln 49 (418)
T 2qag_C 35 MVVGESGLGKSTLIN 49 (418)
T ss_dssp EEECCTTSSHHHHHH
T ss_pred EEECCCCCcHHHHHH
Confidence 788999999999975
No 248
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=88.56 E-value=0.077 Score=41.82 Aligned_cols=17 Identities=35% Similarity=0.222 Sum_probs=15.2
Q ss_pred ceEEEecccCCCccCCC
Q 033696 96 PATIITGFLGSGKNTGS 112 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLL 112 (113)
=+++|.|..|+|||||+
T Consensus 62 ~iv~I~G~pGsGKTtLa 78 (349)
T 2zr9_A 62 RVIEIYGPESSGKTTVA 78 (349)
T ss_dssp SEEEEEESTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 38999999999999983
No 249
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=88.50 E-value=0.085 Score=39.14 Aligned_cols=18 Identities=28% Similarity=0.383 Sum_probs=15.9
Q ss_pred CceEEEecccCCCccCCC
Q 033696 95 IPATIITGFLGSGKNTGS 112 (113)
Q Consensus 95 iPvTIiTGfLGsGKtTLL 112 (113)
-+..+|+|.-|.|||+|+
T Consensus 45 ~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 458999999999999985
No 250
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=88.42 E-value=0.087 Score=41.96 Aligned_cols=17 Identities=29% Similarity=0.354 Sum_probs=15.3
Q ss_pred ceEEEecccCCCccCCC
Q 033696 96 PATIITGFLGSGKNTGS 112 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLL 112 (113)
+..+|+|.-|+||||++
T Consensus 46 ~~~li~G~aGTGKT~ll 62 (459)
T 3upu_A 46 HHVTINGPAGTGATTLT 62 (459)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred CEEEEEeCCCCCHHHHH
Confidence 38999999999999985
No 251
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=88.29 E-value=0.085 Score=40.88 Aligned_cols=16 Identities=31% Similarity=0.196 Sum_probs=15.0
Q ss_pred eEEEecccCCCccCCC
Q 033696 97 ATIITGFLGSGKNTGS 112 (113)
Q Consensus 97 vTIiTGfLGsGKtTLL 112 (113)
+++|+|..|+|||||+
T Consensus 124 i~~I~G~~GsGKTtla 139 (343)
T 1v5w_A 124 ITEAFGEFRTGKTQLS 139 (343)
T ss_dssp EEEEECCTTCTHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 8999999999999984
No 252
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=88.28 E-value=0.067 Score=37.44 Aligned_cols=19 Identities=16% Similarity=0.121 Sum_probs=15.6
Q ss_pred CceEEEecccCCCccCCCC
Q 033696 95 IPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 95 iPvTIiTGfLGsGKtTLLn 113 (113)
.-=++|.|..|+|||||+|
T Consensus 27 ~~ki~vvG~~~vGKSsL~~ 45 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQ 45 (214)
T ss_dssp CEEEEEECSTTSSHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHH
Confidence 3446789999999999974
No 253
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=88.27 E-value=0.057 Score=40.34 Aligned_cols=18 Identities=33% Similarity=0.292 Sum_probs=15.6
Q ss_pred CceEEE--ecccCCCccCCC
Q 033696 95 IPATII--TGFLGSGKNTGS 112 (113)
Q Consensus 95 iPvTIi--TGfLGsGKtTLL 112 (113)
-...+| +|.-|.|||||+
T Consensus 50 ~~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHH
Confidence 357888 999999999985
No 254
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=88.04 E-value=0.16 Score=36.78 Aligned_cols=20 Identities=25% Similarity=0.288 Sum_probs=16.0
Q ss_pred CCCceEEEecccCCCccCCC
Q 033696 93 NRIPATIITGFLGSGKNTGS 112 (113)
Q Consensus 93 ~riPvTIiTGfLGsGKtTLL 112 (113)
+.....+++|..|+|||+|.
T Consensus 45 ~~~~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 45 RPIGSFLFLGPTGVGKTELA 64 (311)
T ss_dssp SCSEEEEEESCSSSSHHHHH
T ss_pred CCceEEEEECCCCcCHHHHH
Confidence 33446899999999999973
No 255
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=87.84 E-value=0.15 Score=36.61 Aligned_cols=20 Identities=30% Similarity=0.591 Sum_probs=17.0
Q ss_pred CCCceEEEecccCCCccCCC
Q 033696 93 NRIPATIITGFLGSGKNTGS 112 (113)
Q Consensus 93 ~riPvTIiTGfLGsGKtTLL 112 (113)
.+.|..+++|.-|+|||++.
T Consensus 36 ~~~~~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 36 KNIPHLLFSGPPGTGKTATA 55 (319)
T ss_dssp TCCCCEEEESSSSSSHHHHH
T ss_pred CCCCeEEEECcCCcCHHHHH
Confidence 46677999999999999873
No 256
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=87.82 E-value=0.12 Score=42.73 Aligned_cols=19 Identities=32% Similarity=0.387 Sum_probs=16.1
Q ss_pred CCceEEEecccCCCccCCC
Q 033696 94 RIPATIITGFLGSGKNTGS 112 (113)
Q Consensus 94 riPvTIiTGfLGsGKtTLL 112 (113)
+-.|++++|..|+||||++
T Consensus 96 ~~~vI~lvG~~GsGKTTt~ 114 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTA 114 (433)
T ss_dssp SSEEEEECCCTTSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3468899999999999974
No 257
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=87.78 E-value=0.15 Score=36.72 Aligned_cols=19 Identities=32% Similarity=0.574 Sum_probs=16.6
Q ss_pred CCceEEEecccCCCccCCC
Q 033696 94 RIPATIITGFLGSGKNTGS 112 (113)
Q Consensus 94 riPvTIiTGfLGsGKtTLL 112 (113)
++|-.+++|.-|.||||+.
T Consensus 45 ~~~~~ll~G~~G~GKT~la 63 (327)
T 1iqp_A 45 SMPHLLFAGPPGVGKTTAA 63 (327)
T ss_dssp CCCEEEEESCTTSSHHHHH
T ss_pred CCCeEEEECcCCCCHHHHH
Confidence 5677999999999999974
No 258
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=87.65 E-value=0.11 Score=43.86 Aligned_cols=19 Identities=5% Similarity=-0.025 Sum_probs=16.1
Q ss_pred CCCceEEEecccCCCccCC
Q 033696 93 NRIPATIITGFLGSGKNTG 111 (113)
Q Consensus 93 ~riPvTIiTGfLGsGKtTL 111 (113)
+.--+++++|+.||||||+
T Consensus 393 ~~~~~I~l~GlsGsGKSTI 411 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQL 411 (511)
T ss_dssp GCCEEEEECTTCCSCHHHH
T ss_pred ccceEEEecccCCCCHHHH
Confidence 3446889999999999997
No 259
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=87.57 E-value=0.069 Score=39.11 Aligned_cols=20 Identities=20% Similarity=0.262 Sum_probs=16.5
Q ss_pred CCceEEEecccCCCccCCCC
Q 033696 94 RIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 94 riPvTIiTGfLGsGKtTLLn 113 (113)
+-.-++|.|.-|+|||||+|
T Consensus 35 ~~~~I~lvG~~g~GKSSLin 54 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVN 54 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 34567889999999999975
No 260
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=87.53 E-value=0.1 Score=41.71 Aligned_cols=16 Identities=19% Similarity=0.150 Sum_probs=15.0
Q ss_pred eEEEecccCCCccCCC
Q 033696 97 ATIITGFLGSGKNTGS 112 (113)
Q Consensus 97 vTIiTGfLGsGKtTLL 112 (113)
+++|.|..|+|||||+
T Consensus 205 liiI~G~pG~GKTtl~ 220 (454)
T 2r6a_A 205 LIIVAARPSVGKTAFA 220 (454)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 8999999999999984
No 261
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=87.51 E-value=0.082 Score=38.75 Aligned_cols=20 Identities=20% Similarity=0.265 Sum_probs=16.7
Q ss_pred CCceEEEecccCCCccCCCC
Q 033696 94 RIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 94 riPvTIiTGfLGsGKtTLLn 113 (113)
+-.-+++.|.-|+|||||+|
T Consensus 38 ~~~~I~vvG~~g~GKSSLin 57 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVN 57 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 34567889999999999975
No 262
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=87.34 E-value=0.19 Score=36.44 Aligned_cols=20 Identities=30% Similarity=0.283 Sum_probs=16.2
Q ss_pred CCCceEEEecccCCCccCCC
Q 033696 93 NRIPATIITGFLGSGKNTGS 112 (113)
Q Consensus 93 ~riPvTIiTGfLGsGKtTLL 112 (113)
....-.+++|..|+|||+|.
T Consensus 65 ~~~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHH
T ss_pred CCCceEEEECCCCCCHHHHH
Confidence 34456899999999999874
No 263
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=87.33 E-value=0.073 Score=41.75 Aligned_cols=16 Identities=31% Similarity=0.337 Sum_probs=14.0
Q ss_pred EEEecccCCCccCCCC
Q 033696 98 TIITGFLGSGKNTGSA 113 (113)
Q Consensus 98 TIiTGfLGsGKtTLLn 113 (113)
++|.|..|+|||||+|
T Consensus 40 I~vvG~~g~GKSTLln 55 (361)
T 2qag_A 40 LMVVGESGLGKSTLIN 55 (361)
T ss_dssp EEECCCTTSCHHHHHH
T ss_pred EEEEcCCCCCHHHHHH
Confidence 3788999999999975
No 264
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=87.25 E-value=0.16 Score=36.54 Aligned_cols=20 Identities=40% Similarity=0.697 Sum_probs=17.0
Q ss_pred CCCceEEEecccCCCccCCC
Q 033696 93 NRIPATIITGFLGSGKNTGS 112 (113)
Q Consensus 93 ~riPvTIiTGfLGsGKtTLL 112 (113)
.++|..+++|.-|.|||++.
T Consensus 40 ~~~~~~ll~G~~G~GKt~la 59 (323)
T 1sxj_B 40 GNMPHMIISGMPGIGKTTSV 59 (323)
T ss_dssp CCCCCEEEECSTTSSHHHHH
T ss_pred CCCCeEEEECcCCCCHHHHH
Confidence 45677999999999999974
No 265
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=87.23 E-value=0.13 Score=38.69 Aligned_cols=17 Identities=35% Similarity=0.468 Sum_probs=15.2
Q ss_pred ceEEEecccCCCccCCC
Q 033696 96 PATIITGFLGSGKNTGS 112 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLL 112 (113)
-+++|+|..|+|||+|.
T Consensus 99 ~i~~i~G~~gsGKT~la 115 (322)
T 2i1q_A 99 SVTEFAGVFGSGKTQIM 115 (322)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 38999999999999973
No 266
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=87.21 E-value=0.11 Score=43.49 Aligned_cols=18 Identities=33% Similarity=0.444 Sum_probs=16.1
Q ss_pred CceEEEecccCCCccCCC
Q 033696 95 IPATIITGFLGSGKNTGS 112 (113)
Q Consensus 95 iPvTIiTGfLGsGKtTLL 112 (113)
=++.||+|..|+||||++
T Consensus 164 ~~~~vi~G~pGTGKTt~l 181 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTV 181 (608)
T ss_dssp BSEEEEECCTTSTHHHHH
T ss_pred CCCEEEEeCCCCCHHHHH
Confidence 479999999999999874
No 267
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=87.19 E-value=0.13 Score=39.20 Aligned_cols=17 Identities=18% Similarity=0.100 Sum_probs=15.3
Q ss_pred ceEEEecccCCCccCCC
Q 033696 96 PATIITGFLGSGKNTGS 112 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLL 112 (113)
=++||+|..|+|||||+
T Consensus 69 ~l~li~G~pG~GKTtl~ 85 (315)
T 3bh0_A 69 NFVLIAARPSMGKTAFA 85 (315)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred cEEEEEeCCCCCHHHHH
Confidence 38999999999999983
No 268
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=87.07 E-value=0.18 Score=42.69 Aligned_cols=18 Identities=28% Similarity=0.458 Sum_probs=15.1
Q ss_pred CCceEEEecccCCCccCC
Q 033696 94 RIPATIITGFLGSGKNTG 111 (113)
Q Consensus 94 riPvTIiTGfLGsGKtTL 111 (113)
+--+++|+|+-||||||+
T Consensus 395 ~~~~I~l~GlsGSGKSTi 412 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAI 412 (573)
T ss_dssp CCEEEEEECSTTSSHHHH
T ss_pred cceEEEeecCCCCCHHHH
Confidence 334688999999999997
No 269
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=86.93 E-value=0.14 Score=42.99 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=16.2
Q ss_pred CCCceEEEecccCCCccCCCC
Q 033696 93 NRIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 93 ~riPvTIiTGfLGsGKtTLLn 113 (113)
.+..+++|+|..|+|||||+|
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~ 119 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCS 119 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHH
Confidence 456688899999999999853
No 270
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=86.71 E-value=0.14 Score=37.24 Aligned_cols=17 Identities=24% Similarity=0.309 Sum_probs=14.8
Q ss_pred ceEEEecccCCCccCCC
Q 033696 96 PATIITGFLGSGKNTGS 112 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLL 112 (113)
...+|+|..|+|||||+
T Consensus 55 ~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp SEEEEESSSSSCHHHHH
T ss_pred CeEEEECcCCCCHHHHH
Confidence 46789999999999974
No 271
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=86.69 E-value=0.17 Score=40.37 Aligned_cols=20 Identities=25% Similarity=0.288 Sum_probs=17.4
Q ss_pred CCCceEEEecccCCCccCCC
Q 033696 93 NRIPATIITGFLGSGKNTGS 112 (113)
Q Consensus 93 ~riPvTIiTGfLGsGKtTLL 112 (113)
...+++.|+|.-|.|||||.
T Consensus 145 ~~~~~v~I~G~~GiGKTtLa 164 (591)
T 1z6t_A 145 GEPGWVTIHGMAGCGKSVLA 164 (591)
T ss_dssp TSCEEEEEECCTTSSHHHHH
T ss_pred CCCceEEEEcCCCCCHHHHH
Confidence 35679999999999999984
No 272
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=86.68 E-value=0.13 Score=42.91 Aligned_cols=17 Identities=41% Similarity=0.487 Sum_probs=15.4
Q ss_pred CceEEEecccCCCccCC
Q 033696 95 IPATIITGFLGSGKNTG 111 (113)
Q Consensus 95 iPvTIiTGfLGsGKtTL 111 (113)
-|++||-|+.|+|||+.
T Consensus 205 ~~~~lI~GPPGTGKT~t 221 (646)
T 4b3f_X 205 KELAIIHGPPGTGKTTT 221 (646)
T ss_dssp SSEEEEECCTTSCHHHH
T ss_pred CCceEEECCCCCCHHHH
Confidence 47999999999999975
No 273
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=86.58 E-value=0.14 Score=38.96 Aligned_cols=16 Identities=38% Similarity=0.364 Sum_probs=14.9
Q ss_pred eEEEecccCCCccCCC
Q 033696 97 ATIITGFLGSGKNTGS 112 (113)
Q Consensus 97 vTIiTGfLGsGKtTLL 112 (113)
+++|+|..|+|||||+
T Consensus 109 i~~i~G~~GsGKT~la 124 (324)
T 2z43_A 109 MTEFFGEFGSGKTQLC 124 (324)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHhHHH
Confidence 8999999999999983
No 274
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=86.51 E-value=0.16 Score=35.69 Aligned_cols=17 Identities=24% Similarity=0.348 Sum_probs=14.4
Q ss_pred ceEEEecccCCCccCCC
Q 033696 96 PATIITGFLGSGKNTGS 112 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLL 112 (113)
+-.+++|..|+|||+|.
T Consensus 40 ~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CEEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 34689999999999974
No 275
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=86.46 E-value=0.13 Score=46.47 Aligned_cols=16 Identities=38% Similarity=0.468 Sum_probs=14.8
Q ss_pred eEEEecccCCCccCCC
Q 033696 97 ATIITGFLGSGKNTGS 112 (113)
Q Consensus 97 vTIiTGfLGsGKtTLL 112 (113)
++.|+|..|||||||+
T Consensus 612 iv~I~G~SGSGKSTLl 627 (916)
T 3pih_A 612 FVCVTGVSGSGKSSLV 627 (916)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEEccCCCChhhhH
Confidence 6889999999999995
No 276
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=86.24 E-value=0.15 Score=36.67 Aligned_cols=17 Identities=24% Similarity=0.341 Sum_probs=14.5
Q ss_pred ceEEEecccCCCccCCC
Q 033696 96 PATIITGFLGSGKNTGS 112 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLL 112 (113)
.-.+|+|..|+|||+|+
T Consensus 52 ~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLA 68 (285)
T ss_dssp SEEEEESSSSSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 34789999999999984
No 277
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=86.22 E-value=0.2 Score=37.09 Aligned_cols=19 Identities=26% Similarity=0.342 Sum_probs=15.7
Q ss_pred CCceEEEecccCCCccCCC
Q 033696 94 RIPATIITGFLGSGKNTGS 112 (113)
Q Consensus 94 riPvTIiTGfLGsGKtTLL 112 (113)
..+..+|+|..|+|||+|+
T Consensus 54 ~~~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 54 CLDHILFSGPAGLGKTTLA 72 (338)
T ss_dssp CCCCEEEECSTTSSHHHHH
T ss_pred CCCeEEEECcCCCCHHHHH
Confidence 3455799999999999974
No 278
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=85.95 E-value=0.17 Score=42.16 Aligned_cols=19 Identities=32% Similarity=0.508 Sum_probs=16.4
Q ss_pred CCceEEEecccCCCccCCC
Q 033696 94 RIPATIITGFLGSGKNTGS 112 (113)
Q Consensus 94 riPvTIiTGfLGsGKtTLL 112 (113)
+-.|++++|..|+||||++
T Consensus 99 ~p~vIlivG~~G~GKTTt~ 117 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTV 117 (443)
T ss_dssp SSEEEEEECCTTSSHHHHH
T ss_pred CCeEEEEECcCCCCHHHHH
Confidence 4568999999999999974
No 279
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=85.89 E-value=0.14 Score=38.47 Aligned_cols=19 Identities=32% Similarity=0.310 Sum_probs=12.6
Q ss_pred CCceEEEecccCCCccCCC
Q 033696 94 RIPATIITGFLGSGKNTGS 112 (113)
Q Consensus 94 riPvTIiTGfLGsGKtTLL 112 (113)
+=-.+++.|.-||||||+.
T Consensus 24 ~g~~I~~eG~~GsGKsT~~ 42 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHL 42 (227)
T ss_dssp CCCEEEEECCC---CHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3347888999999999974
No 280
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=85.80 E-value=0.2 Score=38.59 Aligned_cols=15 Identities=40% Similarity=0.554 Sum_probs=13.8
Q ss_pred eEEEecccCCCccCC
Q 033696 97 ATIITGFLGSGKNTG 111 (113)
Q Consensus 97 vTIiTGfLGsGKtTL 111 (113)
.++|+|..|+|||||
T Consensus 36 ~ilI~GpsGsGKStL 50 (205)
T 2qmh_A 36 GVLITGDSGVGKSET 50 (205)
T ss_dssp EEEEECCCTTTTHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 578999999999997
No 281
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=85.73 E-value=0.14 Score=42.39 Aligned_cols=19 Identities=26% Similarity=0.363 Sum_probs=17.0
Q ss_pred CCceEEEecccCCCccCCC
Q 033696 94 RIPATIITGFLGSGKNTGS 112 (113)
Q Consensus 94 riPvTIiTGfLGsGKtTLL 112 (113)
+-+++++.|..|+|||||+
T Consensus 107 ~g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp CSCEEEEESSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5678999999999999984
No 282
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=85.68 E-value=0.11 Score=42.20 Aligned_cols=20 Identities=30% Similarity=0.114 Sum_probs=16.9
Q ss_pred CCceEEEecccCCCccCCCC
Q 033696 94 RIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 94 riPvTIiTGfLGsGKtTLLn 113 (113)
+-....|.|..|+|||||+|
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n 38 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFR 38 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 34678889999999999976
No 283
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=85.64 E-value=0.15 Score=39.05 Aligned_cols=16 Identities=38% Similarity=0.578 Sum_probs=14.0
Q ss_pred eEEEecccCCCccCCC
Q 033696 97 ATIITGFLGSGKNTGS 112 (113)
Q Consensus 97 vTIiTGfLGsGKtTLL 112 (113)
++.++|..|+||||++
T Consensus 100 ~i~i~g~~G~GKTT~~ 115 (295)
T 1ls1_A 100 LWFLVGLQGSGKTTTA 115 (295)
T ss_dssp EEEEECCTTTTHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 7778899999999974
No 284
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=85.47 E-value=0.23 Score=40.43 Aligned_cols=20 Identities=30% Similarity=0.411 Sum_probs=17.2
Q ss_pred CCCceEEEecccCCCccCCC
Q 033696 93 NRIPATIITGFLGSGKNTGS 112 (113)
Q Consensus 93 ~riPvTIiTGfLGsGKtTLL 112 (113)
.++|..|++|..|+|||||.
T Consensus 48 ~~~~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 48 GHLHSMILWGPPGTGKTTLA 67 (447)
T ss_dssp TCCCEEEEECSTTSSHHHHH
T ss_pred CCCcEEEEECCCCCcHHHHH
Confidence 34588999999999999984
No 285
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=85.40 E-value=0.12 Score=41.52 Aligned_cols=18 Identities=28% Similarity=0.218 Sum_probs=16.0
Q ss_pred CceEEEecccCCCccCCC
Q 033696 95 IPATIITGFLGSGKNTGS 112 (113)
Q Consensus 95 iPvTIiTGfLGsGKtTLL 112 (113)
.+-.+|+|..|+|||||+
T Consensus 130 ~~~lll~Gp~G~GKTtLa 147 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLL 147 (440)
T ss_dssp SCCEEEECSSSSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 567899999999999985
No 286
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=85.33 E-value=0.19 Score=43.75 Aligned_cols=16 Identities=38% Similarity=0.515 Sum_probs=14.5
Q ss_pred ceEEEecccCCCccCC
Q 033696 96 PATIITGFLGSGKNTG 111 (113)
Q Consensus 96 PvTIiTGfLGsGKtTL 111 (113)
-+++++|+-||||||+
T Consensus 53 ~lIvLtGlsGSGKSTl 68 (630)
T 1x6v_B 53 CTVWLTGLSGAGKTTV 68 (630)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred CEEEEEeCCCCCHHHH
Confidence 4789999999999997
No 287
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=85.15 E-value=0.17 Score=39.04 Aligned_cols=18 Identities=28% Similarity=0.466 Sum_probs=14.9
Q ss_pred CceEEEecccCCCccCCC
Q 033696 95 IPATIITGFLGSGKNTGS 112 (113)
Q Consensus 95 iPvTIiTGfLGsGKtTLL 112 (113)
--++++.|..|+||||++
T Consensus 98 ~~vi~i~G~~G~GKTT~~ 115 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTA 115 (297)
T ss_dssp SEEEEEECSSCSSTTHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 347778899999999974
No 288
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=85.06 E-value=0.17 Score=37.31 Aligned_cols=17 Identities=29% Similarity=0.411 Sum_probs=14.9
Q ss_pred ceEEEecccCCCccCCC
Q 033696 96 PATIITGFLGSGKNTGS 112 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLL 112 (113)
.+.+++|.-|+|||||+
T Consensus 39 ~~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIA 55 (373)
T ss_dssp SEEEEESCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46799999999999984
No 289
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=85.03 E-value=0.25 Score=36.75 Aligned_cols=16 Identities=38% Similarity=0.565 Sum_probs=14.6
Q ss_pred eEEEecccCCCccCCC
Q 033696 97 ATIITGFLGSGKNTGS 112 (113)
Q Consensus 97 vTIiTGfLGsGKtTLL 112 (113)
..+++|..|.|||+|.
T Consensus 72 ~vLl~GppGtGKT~la 87 (368)
T 3uk6_A 72 AVLIAGQPGTGKTAIA 87 (368)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 7899999999999974
No 290
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=84.81 E-value=0.12 Score=37.50 Aligned_cols=20 Identities=15% Similarity=0.096 Sum_probs=16.1
Q ss_pred CCceEEEecccCCCccCCCC
Q 033696 94 RIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 94 riPvTIiTGfLGsGKtTLLn 113 (113)
+..-++|.|.-|+|||||+|
T Consensus 154 ~~~~i~i~G~~~~GKssli~ 173 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLI 173 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHH
T ss_pred ceeEEEEECCCCCChHHHHH
Confidence 34557889999999999973
No 291
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=84.64 E-value=0.2 Score=37.45 Aligned_cols=16 Identities=25% Similarity=0.320 Sum_probs=14.1
Q ss_pred eEEEecccCCCccCCC
Q 033696 97 ATIITGFLGSGKNTGS 112 (113)
Q Consensus 97 vTIiTGfLGsGKtTLL 112 (113)
.++++|..|+|||+|.
T Consensus 51 ~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 51 GVLFYGPPGCGKTLLA 66 (301)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred eEEEECCCCcCHHHHH
Confidence 5789999999999974
No 292
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=84.58 E-value=0.18 Score=38.52 Aligned_cols=17 Identities=29% Similarity=0.237 Sum_probs=15.1
Q ss_pred ceEEEecccCCCccCCC
Q 033696 96 PATIITGFLGSGKNTGS 112 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLL 112 (113)
-+.++||.-||||||.|
T Consensus 29 ~l~vitG~MgsGKTT~l 45 (214)
T 2j9r_A 29 WIEVICGSMFSGKSEEL 45 (214)
T ss_dssp EEEEEECSTTSCHHHHH
T ss_pred EEEEEECCCCCcHHHHH
Confidence 48899999999999964
No 293
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=84.46 E-value=0.21 Score=40.82 Aligned_cols=19 Identities=32% Similarity=0.573 Sum_probs=16.0
Q ss_pred CCceEEEecccCCCccCCC
Q 033696 94 RIPATIITGFLGSGKNTGS 112 (113)
Q Consensus 94 riPvTIiTGfLGsGKtTLL 112 (113)
+..+++++|..|+||||+.
T Consensus 98 ~~~vI~ivG~~GvGKTTla 116 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTA 116 (432)
T ss_dssp SCCCEEEECCSSSSTTHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3457889999999999984
No 294
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=84.45 E-value=0.14 Score=38.44 Aligned_cols=18 Identities=39% Similarity=0.364 Sum_probs=15.0
Q ss_pred CceEEEecccCCCccCCC
Q 033696 95 IPATIITGFLGSGKNTGS 112 (113)
Q Consensus 95 iPvTIiTGfLGsGKtTLL 112 (113)
--++++.|.-||||||+.
T Consensus 21 ~~~i~~~G~~g~GKst~~ 38 (223)
T 3ld9_A 21 SMFITFEGIDGSGKTTQS 38 (223)
T ss_dssp CEEEEEECSTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 347788999999999974
No 295
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=84.35 E-value=0.25 Score=35.75 Aligned_cols=20 Identities=20% Similarity=0.270 Sum_probs=16.3
Q ss_pred CCCceEEEecccCCCccCCC
Q 033696 93 NRIPATIITGFLGSGKNTGS 112 (113)
Q Consensus 93 ~riPvTIiTGfLGsGKtTLL 112 (113)
...+-.+++|..|+|||+|.
T Consensus 62 ~~~~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALA 81 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHH
Confidence 44557889999999999873
No 296
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=84.33 E-value=0.19 Score=41.95 Aligned_cols=18 Identities=39% Similarity=0.599 Sum_probs=15.8
Q ss_pred CceEEEecccCCCccCCC
Q 033696 95 IPATIITGFLGSGKNTGS 112 (113)
Q Consensus 95 iPvTIiTGfLGsGKtTLL 112 (113)
-|+++|.|..|+|||+++
T Consensus 195 ~~~~li~GppGTGKT~~~ 212 (624)
T 2gk6_A 195 RPLSLIQGPPGTGKTVTS 212 (624)
T ss_dssp CSEEEEECCTTSCHHHHH
T ss_pred CCCeEEECCCCCCHHHHH
Confidence 378999999999999863
No 297
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=84.14 E-value=0.22 Score=33.30 Aligned_cols=18 Identities=33% Similarity=0.556 Sum_probs=14.7
Q ss_pred CCCceEEEecccCCCccCC
Q 033696 93 NRIPATIITGFLGSGKNTG 111 (113)
Q Consensus 93 ~riPvTIiTGfLGsGKtTL 111 (113)
...|| +|+|..|+|||+|
T Consensus 23 ~~~~v-ll~G~~GtGKt~l 40 (145)
T 3n70_A 23 TDIAV-WLYGAPGTGRMTG 40 (145)
T ss_dssp CCSCE-EEESSTTSSHHHH
T ss_pred CCCCE-EEECCCCCCHHHH
Confidence 34565 7899999999987
No 298
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=84.06 E-value=0.14 Score=38.57 Aligned_cols=16 Identities=38% Similarity=0.615 Sum_probs=14.3
Q ss_pred eEEEecccCCCccCCC
Q 033696 97 ATIITGFLGSGKNTGS 112 (113)
Q Consensus 97 vTIiTGfLGsGKtTLL 112 (113)
++++.|.-||||||+.
T Consensus 29 ~i~~eG~~GsGKsT~~ 44 (236)
T 3lv8_A 29 FIVIEGLEGAGKSTAI 44 (236)
T ss_dssp EEEEEESTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6788999999999974
No 299
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=83.97 E-value=0.24 Score=39.40 Aligned_cols=16 Identities=38% Similarity=0.183 Sum_probs=14.9
Q ss_pred ceEEEecccCCCccCC
Q 033696 96 PATIITGFLGSGKNTG 111 (113)
Q Consensus 96 PvTIiTGfLGsGKtTL 111 (113)
-+++|+|..|+|||||
T Consensus 64 ~ii~I~G~pGsGKTtL 79 (356)
T 1u94_A 64 RIVEIYGPESSGKTTL 79 (356)
T ss_dssp SEEEEECSTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3899999999999998
No 300
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=83.90 E-value=0.2 Score=38.44 Aligned_cols=17 Identities=24% Similarity=0.282 Sum_probs=14.9
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
-++|.|..|+|||||+|
T Consensus 167 kI~ivG~~~vGKSsLl~ 183 (329)
T 3o47_A 167 RILMVGLDAAGKTTILY 183 (329)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred eEEEECCCCccHHHHHH
Confidence 57888999999999974
No 301
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=83.88 E-value=0.19 Score=38.93 Aligned_cols=17 Identities=35% Similarity=0.167 Sum_probs=14.9
Q ss_pred CceEEEecccCCCccCC
Q 033696 95 IPATIITGFLGSGKNTG 111 (113)
Q Consensus 95 iPvTIiTGfLGsGKtTL 111 (113)
=-|.+|||.-||||||.
T Consensus 28 G~I~vitG~M~sGKTT~ 44 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEE 44 (219)
T ss_dssp CEEEEEEECTTSCHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 35899999999999993
No 302
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=83.84 E-value=0.14 Score=42.07 Aligned_cols=16 Identities=25% Similarity=0.191 Sum_probs=14.4
Q ss_pred EEEecccCCCccCCCC
Q 033696 98 TIITGFLGSGKNTGSA 113 (113)
Q Consensus 98 TIiTGfLGsGKtTLLn 113 (113)
++|.|..|+|||||||
T Consensus 227 V~ivG~~nvGKSSLln 242 (462)
T 3geh_A 227 VAIVGRPNVGKSSLLN 242 (462)
T ss_dssp EEEEECTTSSHHHHHH
T ss_pred EEEEcCCCCCHHHHHH
Confidence 6788999999999986
No 303
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=83.50 E-value=0.24 Score=35.49 Aligned_cols=17 Identities=24% Similarity=0.337 Sum_probs=14.2
Q ss_pred ceEEEecccCCCccCCC
Q 033696 96 PATIITGFLGSGKNTGS 112 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLL 112 (113)
+-.+++|..|+|||+|.
T Consensus 51 ~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 35678999999999874
No 304
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=83.44 E-value=0.15 Score=38.52 Aligned_cols=18 Identities=28% Similarity=0.361 Sum_probs=15.7
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
.-+++.|..|+|||||+|
T Consensus 100 ~~v~~vG~~~vGKSslin 117 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIIN 117 (262)
T ss_dssp CEEEEEESTTSSHHHHHH
T ss_pred hheEEeCCCCCCHHHHHH
Confidence 567888999999999976
No 305
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=83.08 E-value=0.26 Score=39.30 Aligned_cols=17 Identities=24% Similarity=0.182 Sum_probs=15.2
Q ss_pred ceEEEecccCCCccCCC
Q 033696 96 PATIITGFLGSGKNTGS 112 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLL 112 (113)
=++||+|..|+|||||+
T Consensus 201 ~l~ii~G~pg~GKT~la 217 (444)
T 2q6t_A 201 SLNIIAARPAMGKTAFA 217 (444)
T ss_dssp CEEEEEECTTSCHHHHH
T ss_pred cEEEEEeCCCCCHHHHH
Confidence 38999999999999983
No 306
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=83.04 E-value=0.17 Score=41.78 Aligned_cols=16 Identities=38% Similarity=0.399 Sum_probs=14.6
Q ss_pred EEEecccCCCccCCCC
Q 033696 98 TIITGFLGSGKNTGSA 113 (113)
Q Consensus 98 TIiTGfLGsGKtTLLn 113 (113)
++|.|..|+|||||||
T Consensus 236 V~ivG~~nvGKSSLln 251 (476)
T 3gee_A 236 TVIAGKPNAGKSTLLN 251 (476)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6789999999999986
No 307
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=82.99 E-value=0.27 Score=44.01 Aligned_cols=16 Identities=38% Similarity=0.578 Sum_probs=14.7
Q ss_pred eEEEecccCCCccCCC
Q 033696 97 ATIITGFLGSGKNTGS 112 (113)
Q Consensus 97 vTIiTGfLGsGKtTLL 112 (113)
+|+|||-.||||+||.
T Consensus 38 l~viTGvSGSGKSSLa 53 (842)
T 2vf7_A 38 LVVFTGVSGSGKSSLA 53 (842)
T ss_dssp EEEEESSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6999999999999984
No 308
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=82.76 E-value=0.37 Score=36.16 Aligned_cols=19 Identities=32% Similarity=0.319 Sum_probs=14.9
Q ss_pred CCCc-eEEEecccCCCccCC
Q 033696 93 NRIP-ATIITGFLGSGKNTG 111 (113)
Q Consensus 93 ~riP-vTIiTGfLGsGKtTL 111 (113)
.+.| ..++.|..|.|||+|
T Consensus 33 ~~~p~~lLl~GppGtGKT~l 52 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQ 52 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHH
T ss_pred CCCCeEEEEECCCCCCHHHH
Confidence 3445 566789999999987
No 309
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=82.74 E-value=0.25 Score=35.95 Aligned_cols=17 Identities=29% Similarity=0.301 Sum_probs=14.5
Q ss_pred ceEEEecccCCCccCCC
Q 033696 96 PATIITGFLGSGKNTGS 112 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLL 112 (113)
+..+|+|.-|.|||+|+
T Consensus 39 ~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCCEEECCTTCCCHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 45788999999999974
No 310
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=82.68 E-value=0.29 Score=37.82 Aligned_cols=18 Identities=22% Similarity=0.296 Sum_probs=15.8
Q ss_pred CCc---eEEEecccCCCccCC
Q 033696 94 RIP---ATIITGFLGSGKNTG 111 (113)
Q Consensus 94 riP---vTIiTGfLGsGKtTL 111 (113)
++| ..++.|..|+||||+
T Consensus 54 ~iPkkn~ili~GPPGtGKTt~ 74 (212)
T 1tue_A 54 GTPKKNCLVFCGPANTGKSYF 74 (212)
T ss_dssp TCTTCSEEEEESCGGGCHHHH
T ss_pred cCCcccEEEEECCCCCCHHHH
Confidence 366 789999999999986
No 311
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=82.38 E-value=0.21 Score=45.72 Aligned_cols=17 Identities=29% Similarity=0.425 Sum_probs=14.8
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++-|.|..|||||||++
T Consensus 418 ~~~ivG~sGsGKSTl~~ 434 (1284)
T 3g5u_A 418 TVALVGNSGCGKSTTVQ 434 (1284)
T ss_dssp EEEEECCSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 57799999999999963
No 312
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=82.35 E-value=0.25 Score=33.03 Aligned_cols=17 Identities=35% Similarity=0.343 Sum_probs=13.7
Q ss_pred CCceEEEecccCCCccCC
Q 033696 94 RIPATIITGFLGSGKNTG 111 (113)
Q Consensus 94 riPvTIiTGfLGsGKtTL 111 (113)
..| ++|+|..|+|||+|
T Consensus 27 ~~~-vll~G~~GtGKt~l 43 (143)
T 3co5_A 27 TSP-VFLTGEAGSPFETV 43 (143)
T ss_dssp SSC-EEEEEETTCCHHHH
T ss_pred CCc-EEEECCCCccHHHH
Confidence 345 46799999999986
No 313
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=82.18 E-value=0.19 Score=40.81 Aligned_cols=17 Identities=18% Similarity=-0.001 Sum_probs=14.6
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
=+++.|+.|+|||||+|
T Consensus 43 kV~lvG~~~vGKSSLl~ 59 (535)
T 3dpu_A 43 KVHLIGDGMAGKTSLLK 59 (535)
T ss_dssp EEEEESSSCSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46788999999999975
No 314
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=82.11 E-value=0.15 Score=36.42 Aligned_cols=15 Identities=27% Similarity=0.443 Sum_probs=13.4
Q ss_pred EEEecccCCCccCCC
Q 033696 98 TIITGFLGSGKNTGS 112 (113)
Q Consensus 98 TIiTGfLGsGKtTLL 112 (113)
.+++|..|+|||+|.
T Consensus 47 vll~G~~GtGKT~la 61 (268)
T 2r62_A 47 VLLVGPPGTGKTLLA 61 (268)
T ss_dssp CCCBCSSCSSHHHHH
T ss_pred EEEECCCCCcHHHHH
Confidence 679999999999974
No 315
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=81.94 E-value=0.19 Score=42.61 Aligned_cols=21 Identities=29% Similarity=0.654 Sum_probs=18.5
Q ss_pred CCCceEEEecccCCCccCCCC
Q 033696 93 NRIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 93 ~riPvTIiTGfLGsGKtTLLn 113 (113)
.+.|-.+|.|-.||||||+||
T Consensus 165 ~~~pHlLIaG~TGSGKSt~L~ 185 (512)
T 2ius_A 165 AKMPHLLVAGTTGSGASVGVN 185 (512)
T ss_dssp GGSCSEEEECCTTSSHHHHHH
T ss_pred ccCceEEEECCCCCCHHHHHH
Confidence 357999999999999999874
No 316
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=81.72 E-value=0.35 Score=35.47 Aligned_cols=15 Identities=33% Similarity=0.543 Sum_probs=13.6
Q ss_pred EEEecccCCCccCCC
Q 033696 98 TIITGFLGSGKNTGS 112 (113)
Q Consensus 98 TIiTGfLGsGKtTLL 112 (113)
.+++|..|+|||+|.
T Consensus 48 vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 48 VLVFGDRGTGKSTAV 62 (350)
T ss_dssp EEEECCGGGCTTHHH
T ss_pred EEEECCCCccHHHHH
Confidence 789999999999874
No 317
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=81.45 E-value=0.34 Score=40.64 Aligned_cols=16 Identities=31% Similarity=0.299 Sum_probs=14.1
Q ss_pred ceEEEecccCCCccCC
Q 033696 96 PATIITGFLGSGKNTG 111 (113)
Q Consensus 96 PvTIiTGfLGsGKtTL 111 (113)
-+++++|+-||||||+
T Consensus 373 ~~I~l~G~~GsGKSTi 388 (546)
T 2gks_A 373 FCVWLTGLPCAGKSTI 388 (546)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred eEEEccCCCCCCHHHH
Confidence 4678899999999997
No 318
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=81.43 E-value=0.21 Score=40.98 Aligned_cols=17 Identities=29% Similarity=0.180 Sum_probs=14.9
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
-+.|.|..|+|||||+|
T Consensus 24 kvgIVG~pnvGKSTL~n 40 (396)
T 2ohf_A 24 KIGIVGLPNVGKSTFFN 40 (396)
T ss_dssp CEEEECCSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46788999999999976
No 319
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=81.36 E-value=0.2 Score=43.09 Aligned_cols=22 Identities=18% Similarity=0.238 Sum_probs=19.6
Q ss_pred CCCCceEEEecccCCCccCCCC
Q 033696 92 DNRIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 92 ~~riPvTIiTGfLGsGKtTLLn 113 (113)
+.+++++.|.|..|+||+||+|
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN 56 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMN 56 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHH
Confidence 5678888999999999999986
No 320
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=80.68 E-value=0.32 Score=42.70 Aligned_cols=18 Identities=39% Similarity=0.599 Sum_probs=15.9
Q ss_pred CceEEEecccCCCccCCC
Q 033696 95 IPATIITGFLGSGKNTGS 112 (113)
Q Consensus 95 iPvTIiTGfLGsGKtTLL 112 (113)
-|+++|.|..|+|||+++
T Consensus 371 ~~~~lI~GppGTGKT~ti 388 (800)
T 2wjy_A 371 RPLSLIQGPPGTGKTVTS 388 (800)
T ss_dssp SSEEEEECCTTSCHHHHH
T ss_pred CCeEEEEcCCCCCHHHHH
Confidence 379999999999999864
No 321
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=80.47 E-value=0.44 Score=38.69 Aligned_cols=19 Identities=26% Similarity=0.146 Sum_probs=17.1
Q ss_pred CCCceEEEecccCCCccCC
Q 033696 93 NRIPATIITGFLGSGKNTG 111 (113)
Q Consensus 93 ~riPvTIiTGfLGsGKtTL 111 (113)
..+.|+.|.|.-|.|||||
T Consensus 150 ~~~~vv~I~G~gGvGKTtL 168 (549)
T 2a5y_B 150 LDSFFLFLHGRAGSGKSVI 168 (549)
T ss_dssp SSSEEEEEECSTTSSHHHH
T ss_pred CCceEEEEEcCCCCCHHHH
Confidence 4578999999999999998
No 322
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=80.29 E-value=0.4 Score=39.08 Aligned_cols=17 Identities=35% Similarity=0.272 Sum_probs=14.8
Q ss_pred ceEEEecccCCCccCCC
Q 033696 96 PATIITGFLGSGKNTGS 112 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLL 112 (113)
.+++|+|..|+|||+|.
T Consensus 124 sviLI~GpPGsGKTtLA 140 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLV 140 (331)
T ss_dssp EEEEEECSCSSSHHHHH
T ss_pred cEEEEEcCCCCCHHHHH
Confidence 46899999999999983
No 323
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=80.11 E-value=0.26 Score=45.18 Aligned_cols=17 Identities=29% Similarity=0.374 Sum_probs=14.8
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
.+.|.|..|||||||++
T Consensus 446 ~vaivG~sGsGKSTll~ 462 (1321)
T 4f4c_A 446 TVALVGSSGCGKSTIIS 462 (1321)
T ss_dssp EEEEEECSSSCHHHHHH
T ss_pred EEEEEecCCCcHHHHHH
Confidence 57799999999999963
No 324
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=79.66 E-value=0.44 Score=38.66 Aligned_cols=19 Identities=32% Similarity=0.426 Sum_probs=16.3
Q ss_pred CCceEEEecccCCCccCCC
Q 033696 94 RIPATIITGFLGSGKNTGS 112 (113)
Q Consensus 94 riPvTIiTGfLGsGKtTLL 112 (113)
..+..+|+|..|+|||||+
T Consensus 76 ~~~~lLL~GppGtGKTtla 94 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAA 94 (516)
T ss_dssp SCSEEEEECSTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3468999999999999974
No 325
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=79.06 E-value=0.29 Score=38.82 Aligned_cols=18 Identities=22% Similarity=0.198 Sum_probs=15.1
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
--++|.|.-|+|||||||
T Consensus 323 ~ki~lvG~~nvGKSsLl~ 340 (497)
T 3lvq_E 323 MRILMLGLDAAGKTTILY 340 (497)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eeEEEEcCCCCCHHHHHH
Confidence 345788999999999975
No 326
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=79.05 E-value=0.28 Score=40.98 Aligned_cols=15 Identities=27% Similarity=0.410 Sum_probs=13.9
Q ss_pred EEEecccCCCccCCC
Q 033696 98 TIITGFLGSGKNTGS 112 (113)
Q Consensus 98 TIiTGfLGsGKtTLL 112 (113)
++|.|..|+|||||+
T Consensus 67 vLL~GppGtGKTtLa 81 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLA 81 (499)
T ss_dssp EEEECSSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 789999999999985
No 327
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=79.05 E-value=0.35 Score=36.98 Aligned_cols=18 Identities=22% Similarity=0.167 Sum_probs=15.2
Q ss_pred CceEEEecccCCCccCCC
Q 033696 95 IPATIITGFLGSGKNTGS 112 (113)
Q Consensus 95 iPvTIiTGfLGsGKtTLL 112 (113)
-.-.+++|..|+|||+|+
T Consensus 152 ~~~lll~G~~GtGKT~La 169 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLL 169 (308)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 356789999999999984
No 328
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=79.04 E-value=0.26 Score=37.53 Aligned_cols=17 Identities=29% Similarity=0.346 Sum_probs=14.6
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
-+.+.|+.|+|||||+|
T Consensus 122 ~v~~vG~~nvGKSsliN 138 (282)
T 1puj_A 122 RALIIGIPNVGKSTLIN 138 (282)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred eEEEEecCCCchHHHHH
Confidence 45677999999999976
No 329
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=78.95 E-value=0.31 Score=44.57 Aligned_cols=17 Identities=29% Similarity=0.362 Sum_probs=14.4
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
++-|.|..|||||||++
T Consensus 1061 ~v~ivG~sGsGKSTl~~ 1077 (1284)
T 3g5u_A 1061 TLALVGSSGCGKSTVVQ 1077 (1284)
T ss_dssp EEEEECSSSTTHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46689999999999963
No 330
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=78.90 E-value=0.44 Score=38.66 Aligned_cols=16 Identities=19% Similarity=0.083 Sum_probs=14.8
Q ss_pred ceEEEecccCCCccCC
Q 033696 96 PATIITGFLGSGKNTG 111 (113)
Q Consensus 96 PvTIiTGfLGsGKtTL 111 (113)
=++||+|..|.|||||
T Consensus 198 ~liiIaG~pG~GKTtl 213 (444)
T 3bgw_A 198 NFVLIAARPSMGKTAF 213 (444)
T ss_dssp CEEEEEECSSSSHHHH
T ss_pred cEEEEEeCCCCChHHH
Confidence 3899999999999998
No 331
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=78.57 E-value=0.29 Score=40.67 Aligned_cols=16 Identities=25% Similarity=0.393 Sum_probs=14.6
Q ss_pred eEEEecccCCCccCCC
Q 033696 97 ATIITGFLGSGKNTGS 112 (113)
Q Consensus 97 vTIiTGfLGsGKtTLL 112 (113)
.++|.|..|+|||||+
T Consensus 62 ~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 62 HVLLIGEPGTGKSMLG 77 (604)
T ss_dssp CEEEECCTTSSHHHHH
T ss_pred EEEEEeCCCCCHHHHH
Confidence 7789999999999985
No 332
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=78.55 E-value=0.44 Score=34.18 Aligned_cols=17 Identities=35% Similarity=0.516 Sum_probs=13.8
Q ss_pred CceEEEecccCCCccCCC
Q 033696 95 IPATIITGFLGSGKNTGS 112 (113)
Q Consensus 95 iPvTIiTGfLGsGKtTLL 112 (113)
.| .+|+|..|+|||+|.
T Consensus 30 ~~-vll~G~~GtGKt~la 46 (265)
T 2bjv_A 30 KP-VLIIGERGTGKELIA 46 (265)
T ss_dssp SC-EEEECCTTSCHHHHH
T ss_pred CC-EEEECCCCCcHHHHH
Confidence 45 467999999999873
No 333
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=78.35 E-value=0.41 Score=41.56 Aligned_cols=17 Identities=35% Similarity=0.446 Sum_probs=14.8
Q ss_pred ceEEEecccCCCccCCC
Q 033696 96 PATIITGFLGSGKNTGS 112 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLL 112 (113)
.++||.|..||||||+|
T Consensus 110 ~~vii~gpTGSGKTtll 126 (773)
T 2xau_A 110 QIMVFVGETGSGKTTQI 126 (773)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 47999999999999953
No 334
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=78.35 E-value=0.58 Score=35.64 Aligned_cols=17 Identities=29% Similarity=0.421 Sum_probs=14.5
Q ss_pred ceEEEecccCCCccCCC
Q 033696 96 PATIITGFLGSGKNTGS 112 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLL 112 (113)
+..+++|..|+|||+|.
T Consensus 73 ~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CCEEEECCCCCCHHHHH
Confidence 45789999999999873
No 335
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=78.31 E-value=0.52 Score=42.58 Aligned_cols=15 Identities=47% Similarity=0.658 Sum_probs=14.3
Q ss_pred eEEEecccCCCccCC
Q 033696 97 ATIITGFLGSGKNTG 111 (113)
Q Consensus 97 vTIiTGfLGsGKtTL 111 (113)
+|+|||-.||||++|
T Consensus 26 l~v~tG~SGSGKSsL 40 (916)
T 3pih_A 26 LVVITGVSGSGKSSL 40 (916)
T ss_dssp EEEEEESTTSSSHHH
T ss_pred EEEEECCCCCcHHHH
Confidence 799999999999987
No 336
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=78.01 E-value=0.49 Score=37.48 Aligned_cols=21 Identities=14% Similarity=0.121 Sum_probs=17.3
Q ss_pred CCCceEEEecccCCCccCCCC
Q 033696 93 NRIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 93 ~riPvTIiTGfLGsGKtTLLn 113 (113)
...+-.+|.|..|+|||||+|
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin 193 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVN 193 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHH
Confidence 345667889999999999975
No 337
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=77.99 E-value=0.31 Score=41.76 Aligned_cols=20 Identities=20% Similarity=0.172 Sum_probs=17.0
Q ss_pred CCceEEEecccCCCccCCCC
Q 033696 94 RIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 94 riPvTIiTGfLGsGKtTLLn 113 (113)
+..-++|.|..|+|||||||
T Consensus 68 ~~~~V~VvG~~naGKSSLlN 87 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLN 87 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 34568899999999999986
No 338
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=77.80 E-value=0.49 Score=36.10 Aligned_cols=17 Identities=24% Similarity=0.325 Sum_probs=14.5
Q ss_pred ceEEEecccCCCccCCC
Q 033696 96 PATIITGFLGSGKNTGS 112 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLL 112 (113)
.-.+++|..|+|||+|.
T Consensus 46 ~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLA 62 (322)
T ss_dssp SEEEEESSSSSCHHHHH
T ss_pred ceEEEECCCCccHHHHH
Confidence 36789999999999974
No 339
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=77.73 E-value=0.42 Score=39.20 Aligned_cols=16 Identities=25% Similarity=0.029 Sum_probs=14.7
Q ss_pred eEEEecccCCCccCCC
Q 033696 97 ATIITGFLGSGKNTGS 112 (113)
Q Consensus 97 vTIiTGfLGsGKtTLL 112 (113)
+|.|.|..|+|||||+
T Consensus 30 iteI~G~pGsGKTtL~ 45 (333)
T 3io5_A 30 LLILAGPSKSFKSNFG 45 (333)
T ss_dssp EEEEEESSSSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 7999999999999983
No 340
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=77.69 E-value=0.46 Score=41.68 Aligned_cols=18 Identities=39% Similarity=0.599 Sum_probs=15.8
Q ss_pred CceEEEecccCCCccCCC
Q 033696 95 IPATIITGFLGSGKNTGS 112 (113)
Q Consensus 95 iPvTIiTGfLGsGKtTLL 112 (113)
-|+++|.|..|+|||+++
T Consensus 375 ~~~~lI~GppGTGKT~~i 392 (802)
T 2xzl_A 375 RPLSLIQGPPGTGKTVTS 392 (802)
T ss_dssp CSEEEEECSTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 478999999999999863
No 341
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=77.68 E-value=0.5 Score=37.75 Aligned_cols=15 Identities=40% Similarity=0.231 Sum_probs=14.4
Q ss_pred eEEEecccCCCccCC
Q 033696 97 ATIITGFLGSGKNTG 111 (113)
Q Consensus 97 vTIiTGfLGsGKtTL 111 (113)
+++|.|..|+|||||
T Consensus 76 li~I~G~pGsGKTtl 90 (366)
T 1xp8_A 76 ITEIYGPESGGKTTL 90 (366)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEEcCCCCChHHH
Confidence 899999999999998
No 342
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=77.66 E-value=0.49 Score=35.55 Aligned_cols=17 Identities=24% Similarity=0.356 Sum_probs=14.7
Q ss_pred ceEEEecccCCCccCCC
Q 033696 96 PATIITGFLGSGKNTGS 112 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLL 112 (113)
.-.+++|..|.|||+|.
T Consensus 52 ~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CEEEEECSSSSCHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 46899999999999873
No 343
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=77.51 E-value=0.26 Score=39.93 Aligned_cols=21 Identities=19% Similarity=0.303 Sum_probs=17.3
Q ss_pred CCCceEEEecccCCCccCCCC
Q 033696 93 NRIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 93 ~riPvTIiTGfLGsGKtTLLn 113 (113)
++..-.++.|.-++|||||+|
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~ 61 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGG 61 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHH
T ss_pred CCeeEEEEEECCCCCHHHHHH
Confidence 445678899999999999974
No 344
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=77.03 E-value=0.22 Score=41.22 Aligned_cols=18 Identities=28% Similarity=0.194 Sum_probs=15.7
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
.-++|.|..|+|||||||
T Consensus 244 ~kV~ivG~pnvGKSSLln 261 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLN 261 (482)
T ss_dssp EEEEEECCHHHHTCHHHH
T ss_pred CEEEEECcCCCcHHHHHH
Confidence 457899999999999986
No 345
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=76.98 E-value=0.5 Score=39.84 Aligned_cols=20 Identities=30% Similarity=0.429 Sum_probs=16.6
Q ss_pred CCceEEEecccCCCccCCCC
Q 033696 94 RIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 94 riPvTIiTGfLGsGKtTLLn 113 (113)
.+.-++|.|..++|||||+|
T Consensus 176 ~~~~I~iiG~~d~GKSTLi~ 195 (592)
T 3mca_A 176 PVVHLVVTGHVDSGKSTMLG 195 (592)
T ss_dssp CEEEEEEECCSSSTHHHHHH
T ss_pred CccEEEEEcCCCCCHHHHHH
Confidence 34458899999999999974
No 346
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=76.96 E-value=0.54 Score=37.52 Aligned_cols=17 Identities=24% Similarity=0.122 Sum_probs=15.3
Q ss_pred ceEEEecccCCCccCCC
Q 033696 96 PATIITGFLGSGKNTGS 112 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLL 112 (113)
=++||+|..|.|||||+
T Consensus 47 ~LiiIaG~pG~GKTt~a 63 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLM 63 (338)
T ss_dssp CEEEEEECTTSCHHHHH
T ss_pred cEEEEEeCCCCCHHHHH
Confidence 48999999999999983
No 347
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=76.89 E-value=0.48 Score=39.01 Aligned_cols=19 Identities=32% Similarity=0.424 Sum_probs=15.3
Q ss_pred CCceEEEecccCCCccCCC
Q 033696 94 RIPATIITGFLGSGKNTGS 112 (113)
Q Consensus 94 riPvTIiTGfLGsGKtTLL 112 (113)
+--++.++|..|+||||++
T Consensus 97 ~~~vi~i~G~~GsGKTT~~ 115 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTA 115 (425)
T ss_dssp SSEEEEEECCTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3347778899999999974
No 348
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=76.67 E-value=0.36 Score=38.74 Aligned_cols=16 Identities=19% Similarity=-0.031 Sum_probs=14.8
Q ss_pred eEEEecccCCCccCCC
Q 033696 97 ATIITGFLGSGKNTGS 112 (113)
Q Consensus 97 vTIiTGfLGsGKtTLL 112 (113)
++||+|..|+|||||+
T Consensus 244 l~li~G~pG~GKT~la 259 (503)
T 1q57_A 244 VIMVTSGSGMVMSTFV 259 (503)
T ss_dssp EEEEEESSCHHHHHHH
T ss_pred EEEEeecCCCCchHHH
Confidence 7999999999999983
No 349
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=76.42 E-value=0.41 Score=38.02 Aligned_cols=21 Identities=19% Similarity=0.219 Sum_probs=17.2
Q ss_pred CCCceEEEecccCCCccCCCC
Q 033696 93 NRIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 93 ~riPvTIiTGfLGsGKtTLLn 113 (113)
+...-.++.|.-++|||||+|
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~ 42 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIG 42 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHH
T ss_pred CCceEEEEEECCCCCHHHHHH
Confidence 345567899999999999974
No 350
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=75.68 E-value=0.6 Score=35.90 Aligned_cols=17 Identities=24% Similarity=0.319 Sum_probs=14.6
Q ss_pred ceEEEecccCCCccCCC
Q 033696 96 PATIITGFLGSGKNTGS 112 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLL 112 (113)
..++|+|..|+|||+|.
T Consensus 118 ~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 118 KGILLFGPPGTGKTLIG 134 (357)
T ss_dssp SEEEEESSTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 45789999999999974
No 351
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=75.26 E-value=0.63 Score=42.76 Aligned_cols=15 Identities=40% Similarity=0.674 Sum_probs=14.2
Q ss_pred eEEEecccCCCccCC
Q 033696 97 ATIITGFLGSGKNTG 111 (113)
Q Consensus 97 vTIiTGfLGsGKtTL 111 (113)
+|+|||-.||||++|
T Consensus 46 lvv~tG~SGSGKSSL 60 (972)
T 2r6f_A 46 LVVLTGLSGSGKSSL 60 (972)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 799999999999987
No 352
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=75.23 E-value=0.64 Score=42.80 Aligned_cols=15 Identities=40% Similarity=0.620 Sum_probs=14.2
Q ss_pred eEEEecccCCCccCC
Q 033696 97 ATIITGFLGSGKNTG 111 (113)
Q Consensus 97 vTIiTGfLGsGKtTL 111 (113)
+|+|||-.||||++|
T Consensus 48 lvv~tG~SGSGKSSL 62 (993)
T 2ygr_A 48 LIVFTGLSGSGKSSL 62 (993)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEECCCCCcHHHH
Confidence 799999999999987
No 353
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=75.17 E-value=0.63 Score=35.36 Aligned_cols=15 Identities=33% Similarity=0.423 Sum_probs=13.2
Q ss_pred eEEEecccCCCccCC
Q 033696 97 ATIITGFLGSGKNTG 111 (113)
Q Consensus 97 vTIiTGfLGsGKtTL 111 (113)
-.+++|..|+|||+|
T Consensus 53 ~vll~GppGtGKT~l 67 (363)
T 3hws_A 53 NILLIGPTGSGKTLL 67 (363)
T ss_dssp CEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 468899999999987
No 354
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=74.89 E-value=0.69 Score=34.04 Aligned_cols=17 Identities=24% Similarity=0.229 Sum_probs=14.4
Q ss_pred ceEEEecccCCCccCCC
Q 033696 96 PATIITGFLGSGKNTGS 112 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLL 112 (113)
++.+++|..|.|||++.
T Consensus 49 ~~~L~~G~~G~GKT~la 65 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVA 65 (324)
T ss_dssp SEEEECSSTTSSHHHHH
T ss_pred eEEEeeCcCCCCHHHHH
Confidence 46788899999999973
No 355
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=74.65 E-value=0.41 Score=37.22 Aligned_cols=19 Identities=21% Similarity=0.291 Sum_probs=16.1
Q ss_pred CCceEEEecccCCCccCCC
Q 033696 94 RIPATIITGFLGSGKNTGS 112 (113)
Q Consensus 94 riPvTIiTGfLGsGKtTLL 112 (113)
...=++|.|..|||||+++
T Consensus 52 ~~~h~~i~G~tGsGKs~~~ 70 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLL 70 (437)
T ss_dssp GGGCEEEEECTTSSHHHHH
T ss_pred CcceEEEECCCCCCHHHHH
Confidence 4566899999999999975
No 356
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=74.56 E-value=0.56 Score=35.35 Aligned_cols=15 Identities=40% Similarity=0.445 Sum_probs=13.7
Q ss_pred eEEEecccCCCccCC
Q 033696 97 ATIITGFLGSGKNTG 111 (113)
Q Consensus 97 vTIiTGfLGsGKtTL 111 (113)
+..|+|.-||||||.
T Consensus 22 l~fiyG~MgsGKTt~ 36 (195)
T 1w4r_A 22 IQVILGPMFSGKSTE 36 (195)
T ss_dssp EEEEEECTTSCHHHH
T ss_pred EEEEECCCCCcHHHH
Confidence 889999999999964
No 357
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=74.49 E-value=0.45 Score=39.58 Aligned_cols=15 Identities=27% Similarity=0.430 Sum_probs=13.5
Q ss_pred EEEecccCCCccCCC
Q 033696 98 TIITGFLGSGKNTGS 112 (113)
Q Consensus 98 TIiTGfLGsGKtTLL 112 (113)
++|.|..|+|||+|+
T Consensus 52 vLL~GppGtGKT~La 66 (476)
T 2ce7_A 52 ILLVGPPGTGKTLLA 66 (476)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 679999999999984
No 358
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=74.48 E-value=0.39 Score=38.78 Aligned_cols=18 Identities=22% Similarity=0.351 Sum_probs=15.0
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
-=.+|.|..|+|||||+|
T Consensus 34 ~ki~iiG~~~~GKSTLi~ 51 (483)
T 3p26_A 34 LSFVVLGHVDAGKSTLMG 51 (483)
T ss_dssp EEEEEESCGGGTHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 346789999999999975
No 359
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=74.05 E-value=0.69 Score=35.72 Aligned_cols=16 Identities=25% Similarity=0.370 Sum_probs=13.7
Q ss_pred eEEEecccCCCccCCC
Q 033696 97 ATIITGFLGSGKNTGS 112 (113)
Q Consensus 97 vTIiTGfLGsGKtTLL 112 (113)
-++++|..|.|||+|.
T Consensus 86 ~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 86 GILLYGPPGTGKSYLA 101 (355)
T ss_dssp CEEEECSTTSCHHHHH
T ss_pred eEEEECCCCCcHHHHH
Confidence 4688999999999873
No 360
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=73.97 E-value=0.78 Score=38.90 Aligned_cols=21 Identities=19% Similarity=0.205 Sum_probs=16.8
Q ss_pred CCCceEEEecccCCCccCCCC
Q 033696 93 NRIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 93 ~riPvTIiTGfLGsGKtTLLn 113 (113)
+..--.+|.|..|+|||||+|
T Consensus 165 k~~lkV~ivG~~n~GKSTLin 185 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMG 185 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHH
T ss_pred CCceEEEEEECCCCCHHHHHH
Confidence 344567789999999999975
No 361
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=73.79 E-value=0.74 Score=36.66 Aligned_cols=22 Identities=14% Similarity=0.149 Sum_probs=18.2
Q ss_pred CCCCceEEEecccCCCccCCCC
Q 033696 92 DNRIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 92 ~~riPvTIiTGfLGsGKtTLLn 113 (113)
....+-.++.|..|+|||||+|
T Consensus 192 ~~~~~ki~ivG~~~vGKSslin 213 (456)
T 4dcu_A 192 NEEVIQFCLIGRPNVGKSSLVN 213 (456)
T ss_dssp CTTCEEEEEECSTTSSHHHHHH
T ss_pred ccccceeEEecCCCCCHHHHHH
Confidence 3456778899999999999975
No 362
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=72.87 E-value=1 Score=37.90 Aligned_cols=19 Identities=26% Similarity=0.256 Sum_probs=17.1
Q ss_pred CCCceEEEecccCCCccCC
Q 033696 93 NRIPATIITGFLGSGKNTG 111 (113)
Q Consensus 93 ~riPvTIiTGfLGsGKtTL 111 (113)
....++.|+|.-|.|||||
T Consensus 145 ~~~~~v~i~G~gG~GKTtL 163 (1249)
T 3sfz_A 145 GEPGWVTIYGMAGCGKSVL 163 (1249)
T ss_dssp TSCEEEEEECSTTSSHHHH
T ss_pred CCCCEEEEEeCCCCCHHHH
Confidence 5578899999999999998
No 363
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=72.47 E-value=0.82 Score=41.99 Aligned_cols=15 Identities=33% Similarity=0.379 Sum_probs=13.0
Q ss_pred EEEecccCCCccCCC
Q 033696 98 TIITGFLGSGKNTGS 112 (113)
Q Consensus 98 TIiTGfLGsGKtTLL 112 (113)
+-|.|..|||||||+
T Consensus 1108 vaIVG~SGsGKSTL~ 1122 (1321)
T 4f4c_A 1108 LALVGPSGCGKSTVV 1122 (1321)
T ss_dssp EEEECSTTSSTTSHH
T ss_pred EEEECCCCChHHHHH
Confidence 457899999999985
No 364
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=72.46 E-value=1.5 Score=35.83 Aligned_cols=18 Identities=28% Similarity=0.569 Sum_probs=14.8
Q ss_pred CCceEEEecccCCCccCC
Q 033696 94 RIPATIITGFLGSGKNTG 111 (113)
Q Consensus 94 riPvTIiTGfLGsGKtTL 111 (113)
+.-+++++|--|+||||+
T Consensus 99 ~~~vI~ivG~~GvGKTT~ 116 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTS 116 (433)
T ss_dssp SSEEEEEECSTTSSHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 344777889999999997
No 365
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=72.12 E-value=0.64 Score=37.48 Aligned_cols=15 Identities=27% Similarity=0.244 Sum_probs=12.3
Q ss_pred EEEecccCCCccCCC
Q 033696 98 TIITGFLGSGKNTGS 112 (113)
Q Consensus 98 TIiTGfLGsGKtTLL 112 (113)
++|.|.-|||||+.|
T Consensus 25 ~lV~a~aGsGKT~~l 39 (647)
T 3lfu_A 25 LLVLAGAGSGKTRVL 39 (647)
T ss_dssp EEEEECTTSCHHHHH
T ss_pred EEEEECCCCCHHHHH
Confidence 577788999999864
No 366
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=71.19 E-value=0.57 Score=40.81 Aligned_cols=16 Identities=25% Similarity=0.372 Sum_probs=14.1
Q ss_pred eEEEecccCCCccCCC
Q 033696 97 ATIITGFLGSGKNTGS 112 (113)
Q Consensus 97 vTIiTGfLGsGKtTLL 112 (113)
-++|+|..|+|||||+
T Consensus 240 ~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 240 GILLYGPPGTGKTLIA 255 (806)
T ss_dssp EEEECSCTTSSHHHHH
T ss_pred eEEEECcCCCCHHHHH
Confidence 4788999999999984
No 367
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=70.97 E-value=0.87 Score=36.42 Aligned_cols=15 Identities=33% Similarity=0.519 Sum_probs=13.4
Q ss_pred eEEEecccCCCccCC
Q 033696 97 ATIITGFLGSGKNTG 111 (113)
Q Consensus 97 vTIiTGfLGsGKtTL 111 (113)
-.+++|+.|+|||||
T Consensus 149 gvli~G~sG~GKStl 163 (312)
T 1knx_A 149 GVLLTGRSGIGKSEC 163 (312)
T ss_dssp EEEEEESSSSSHHHH
T ss_pred EEEEEcCCCCCHHHH
Confidence 478999999999986
No 368
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=70.19 E-value=0.58 Score=37.02 Aligned_cols=20 Identities=20% Similarity=-0.140 Sum_probs=16.9
Q ss_pred CCCceEEEecccCCCccCCC
Q 033696 93 NRIPATIITGFLGSGKNTGS 112 (113)
Q Consensus 93 ~riPvTIiTGfLGsGKtTLL 112 (113)
.+-+..+|+|..|.|||++.
T Consensus 43 ~~~~~lli~GpPGTGKT~~v 62 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLV 62 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHH
Confidence 45678899999999999863
No 369
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=70.04 E-value=0.43 Score=34.80 Aligned_cols=13 Identities=31% Similarity=0.335 Sum_probs=10.4
Q ss_pred ecccCCCccCCCC
Q 033696 101 TGFLGSGKNTGSA 113 (113)
Q Consensus 101 TGfLGsGKtTLLn 113 (113)
.|+.|+|||||+|
T Consensus 34 ~~~~~vGKSsLi~ 46 (255)
T 3c5h_A 34 KGQCGIGKSCLCN 46 (255)
T ss_dssp TTTCCCSHHHHHH
T ss_pred cCCCCcCHHHHHH
Confidence 3567999999975
No 370
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=69.98 E-value=0.52 Score=38.18 Aligned_cols=21 Identities=24% Similarity=0.303 Sum_probs=17.9
Q ss_pred CCCceEEEecccCCCccCCCC
Q 033696 93 NRIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 93 ~riPvTIiTGfLGsGKtTLLn 113 (113)
...+-+-|.|+..+|||||||
T Consensus 70 ~g~a~V~ivG~PNvGKSTL~n 90 (376)
T 4a9a_A 70 TGVASVGFVGFPSVGKSTLLS 90 (376)
T ss_dssp CSSEEEEEECCCCHHHHHHHH
T ss_pred cCCCeEEEECCCCCCHHHHHH
Confidence 456667889999999999986
No 371
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=69.13 E-value=0.67 Score=34.33 Aligned_cols=16 Identities=19% Similarity=0.320 Sum_probs=13.6
Q ss_pred eEEEecccCCCccCCC
Q 033696 97 ATIITGFLGSGKNTGS 112 (113)
Q Consensus 97 vTIiTGfLGsGKtTLL 112 (113)
-.++.|..|.|||+|.
T Consensus 48 ~vll~G~pGtGKT~la 63 (331)
T 2r44_A 48 HILLEGVPGLAKTLSV 63 (331)
T ss_dssp CEEEESCCCHHHHHHH
T ss_pred eEEEECCCCCcHHHHH
Confidence 3678999999999874
No 372
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=68.83 E-value=1.1 Score=34.61 Aligned_cols=17 Identities=24% Similarity=0.317 Sum_probs=14.8
Q ss_pred ceEEEecccCCCccCCC
Q 033696 96 PATIITGFLGSGKNTGS 112 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLL 112 (113)
.-.+|+|..|.|||+|.
T Consensus 149 ~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 149 RGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp SEEEEESSTTSCHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 56899999999999873
No 373
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=68.62 E-value=1.1 Score=35.84 Aligned_cols=17 Identities=24% Similarity=0.325 Sum_probs=14.6
Q ss_pred ceEEEecccCCCccCCC
Q 033696 96 PATIITGFLGSGKNTGS 112 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLL 112 (113)
.-.+++|..|.|||+|.
T Consensus 168 ~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLA 184 (444)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46789999999999873
No 374
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=68.18 E-value=1.1 Score=35.61 Aligned_cols=15 Identities=33% Similarity=0.527 Sum_probs=13.6
Q ss_pred eEEEecccCCCccCC
Q 033696 97 ATIITGFLGSGKNTG 111 (113)
Q Consensus 97 vTIiTGfLGsGKtTL 111 (113)
-.++.|..|.|||+|
T Consensus 65 ~iLl~GppGtGKT~l 79 (456)
T 2c9o_A 65 AVLLAGPPGTGKTAL 79 (456)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCcCCHHHH
Confidence 578999999999987
No 375
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=67.70 E-value=1.2 Score=35.45 Aligned_cols=20 Identities=30% Similarity=0.267 Sum_probs=15.7
Q ss_pred CCCceEEEecccCCCccCCC
Q 033696 93 NRIPATIITGFLGSGKNTGS 112 (113)
Q Consensus 93 ~riPvTIiTGfLGsGKtTLL 112 (113)
++.-=++|.|.-|||||||+
T Consensus 31 ~~~~killlG~~~SGKST~~ 50 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFL 50 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHH
T ss_pred cCccEEEEECCCCCcHHHHH
Confidence 44445678899999999984
No 376
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=67.45 E-value=0.94 Score=40.44 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=19.8
Q ss_pred CCCCceEEEecccCCCccCCCC
Q 033696 92 DNRIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 92 ~~riPvTIiTGfLGsGKtTLLn 113 (113)
.-.+|-++|.|..++||+||||
T Consensus 48 ~i~lp~I~vvG~~saGKSSlln 69 (772)
T 3zvr_A 48 DLDLPQIAVVGGQSAGKSSVLE 69 (772)
T ss_dssp GGCCSEEEEEECTTTCHHHHHH
T ss_pred cCCCCEEEEECCCCCcHHHHHH
Confidence 4578999999999999999986
No 377
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=66.80 E-value=1.7 Score=36.37 Aligned_cols=19 Identities=21% Similarity=0.330 Sum_probs=15.8
Q ss_pred CCCceEEEecccCCCccCC
Q 033696 93 NRIPATIITGFLGSGKNTG 111 (113)
Q Consensus 93 ~riPvTIiTGfLGsGKtTL 111 (113)
+.+...+++|..|+|||+|
T Consensus 486 ~p~~~~ll~G~~GtGKT~l 504 (758)
T 1r6b_X 486 KPVGSFLFAGPTGVGKTEV 504 (758)
T ss_dssp SCSEEEEEECSTTSSHHHH
T ss_pred CCceEEEEECCCCCcHHHH
Confidence 3455789999999999987
No 378
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=66.20 E-value=1.2 Score=35.50 Aligned_cols=15 Identities=40% Similarity=0.536 Sum_probs=13.5
Q ss_pred eEEEecccCCCccCC
Q 033696 97 ATIITGFLGSGKNTG 111 (113)
Q Consensus 97 vTIiTGfLGsGKtTL 111 (113)
-.+++|..|+||+||
T Consensus 146 ~vl~~G~sG~GKSt~ 160 (314)
T 1ko7_A 146 GVLITGDSGIGKSET 160 (314)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEEeCCCCCHHHH
Confidence 478999999999987
No 379
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=66.01 E-value=0.87 Score=35.81 Aligned_cols=17 Identities=24% Similarity=0.235 Sum_probs=14.8
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
-+.+.|..|+||+||+|
T Consensus 164 ~i~~vG~~nvGKStliN 180 (369)
T 3ec1_A 164 DVYVVGCTNVGKSTFIN 180 (369)
T ss_dssp CEEEECCTTSSHHHHHH
T ss_pred cEEEEcCCCCchHHHHH
Confidence 46788999999999976
No 380
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=65.85 E-value=0.85 Score=35.95 Aligned_cols=17 Identities=24% Similarity=0.235 Sum_probs=14.8
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
-..+.|..|+||+||+|
T Consensus 162 ~i~~vG~~nvGKStliN 178 (368)
T 3h2y_A 162 DVYVVGCTNVGKSTFIN 178 (368)
T ss_dssp CEEEEEBTTSSHHHHHH
T ss_pred eEEEecCCCCChhHHHH
Confidence 46788999999999976
No 381
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=65.48 E-value=2 Score=34.60 Aligned_cols=18 Identities=22% Similarity=0.290 Sum_probs=14.6
Q ss_pred CceEEEecccCCCccCCC
Q 033696 95 IPATIITGFLGSGKNTGS 112 (113)
Q Consensus 95 iPvTIiTGfLGsGKtTLL 112 (113)
.+-.+++|..|.|||+|.
T Consensus 201 ~~~~LL~G~pG~GKT~la 218 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIA 218 (468)
T ss_dssp SCEEEEESCTTTTTHHHH
T ss_pred CCCeEEECCCCCCHHHHH
Confidence 344589999999999873
No 382
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=64.12 E-value=1.5 Score=33.19 Aligned_cols=17 Identities=29% Similarity=0.389 Sum_probs=13.8
Q ss_pred CCceEEEecccCCCccCC
Q 033696 94 RIPATIITGFLGSGKNTG 111 (113)
Q Consensus 94 riPvTIiTGfLGsGKtTL 111 (113)
..|| +|+|..|.|||+|
T Consensus 25 ~~~v-Li~Ge~GtGKt~l 41 (304)
T 1ojl_A 25 DATV-LIHGDSGTGKELV 41 (304)
T ss_dssp TSCE-EEESCTTSCHHHH
T ss_pred CCcE-EEECCCCchHHHH
Confidence 4555 5799999999986
No 383
>1ii2_A Phosphoenolpyruvate carboxykinase; phosphate binding loop, lyase; 2.00A {Trypanosoma cruzi} SCOP: c.91.1.1 c.109.1.1
Probab=64.03 E-value=1.6 Score=37.52 Aligned_cols=16 Identities=44% Similarity=0.619 Sum_probs=14.9
Q ss_pred eEEEecccCCCccCCC
Q 033696 97 ATIITGFLGSGKNTGS 112 (113)
Q Consensus 97 vTIiTGfLGsGKtTLL 112 (113)
++++.|..|+|||||.
T Consensus 215 ~~~ffGlSGtGKTTLs 230 (524)
T 1ii2_A 215 VTVFFGLSGTGKTTLS 230 (524)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEccCCcchhhhh
Confidence 8999999999999984
No 384
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=63.77 E-value=1.8 Score=32.88 Aligned_cols=19 Identities=26% Similarity=0.323 Sum_probs=15.9
Q ss_pred CCC-ceEEEecccCCCccCC
Q 033696 93 NRI-PATIITGFLGSGKNTG 111 (113)
Q Consensus 93 ~ri-PvTIiTGfLGsGKtTL 111 (113)
.++ ++.+++|.-|.|||++
T Consensus 21 ~~~~~a~L~~G~~G~GKt~~ 40 (334)
T 1a5t_A 21 GRGHHALLIQALPGMGDDAL 40 (334)
T ss_dssp TCCCSEEEEECCTTSCHHHH
T ss_pred CCcceeEEEECCCCchHHHH
Confidence 344 4799999999999986
No 385
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=63.62 E-value=2.2 Score=36.07 Aligned_cols=20 Identities=30% Similarity=0.298 Sum_probs=16.3
Q ss_pred CCCCceEEEecccCCCccCC
Q 033696 92 DNRIPATIITGFLGSGKNTG 111 (113)
Q Consensus 92 ~~riPvTIiTGfLGsGKtTL 111 (113)
.+.++..+++|..|.|||+|
T Consensus 518 ~~p~~~~Ll~Gp~GtGKT~l 537 (758)
T 3pxi_A 518 KRPIGSFIFLGPTGVGKTEL 537 (758)
T ss_dssp TSCSEEEEEESCTTSSHHHH
T ss_pred CCCceEEEEECCCCCCHHHH
Confidence 34455699999999999986
No 386
>1ytm_A Phosphoenolpyruvate carboxykinase [ATP], phosphoenolpyruvate; domain closure, nucleotide binding; HET: ATP; 2.20A {Anaerobiospirillum succiniciproducens} PDB: 1yvy_A
Probab=63.26 E-value=1.7 Score=37.50 Aligned_cols=16 Identities=44% Similarity=0.609 Sum_probs=14.9
Q ss_pred eEEEecccCCCccCCC
Q 033696 97 ATIITGFLGSGKNTGS 112 (113)
Q Consensus 97 vTIiTGfLGsGKtTLL 112 (113)
++++.|..|+|||||.
T Consensus 237 ~~~ffGlSGtGKTTLs 252 (532)
T 1ytm_A 237 TAIFFGLSGTGKTTLS 252 (532)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEecCCCCHHHHh
Confidence 8999999999999984
No 387
>2olr_A Phosphoenolpyruvate carboxykinase; carbon dioxide, lyase; HET: ATP; 1.60A {Escherichia coli K12} SCOP: c.91.1.1 c.109.1.1 PDB: 1k3c_A* 1k3d_A* 1aq2_A* 2olq_A* 1os1_A* 2pxz_X* 1ayl_A* 2py7_X* 1oen_A 1ylh_A* 1ygg_A*
Probab=62.61 E-value=1.8 Score=37.63 Aligned_cols=16 Identities=38% Similarity=0.580 Sum_probs=14.8
Q ss_pred eEEEecccCCCccCCC
Q 033696 97 ATIITGFLGSGKNTGS 112 (113)
Q Consensus 97 vTIiTGfLGsGKtTLL 112 (113)
+++++|..|+|||||.
T Consensus 243 ~~lffGlSGtGKTTLs 258 (540)
T 2olr_A 243 VAVFFGLSGTGKTTLS 258 (540)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEEccCCCCHHHHh
Confidence 8999999999999983
No 388
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=62.54 E-value=0.96 Score=37.13 Aligned_cols=19 Identities=32% Similarity=0.392 Sum_probs=15.5
Q ss_pred CCceEEEecccCCCccCCC
Q 033696 94 RIPATIITGFLGSGKNTGS 112 (113)
Q Consensus 94 riPvTIiTGfLGsGKtTLL 112 (113)
+.-.+.|=|--|+||||++
T Consensus 48 ~~~fIt~EG~dGsGKTT~~ 66 (376)
T 1of1_A 48 TLLRVYIDGPHGMGKTTTT 66 (376)
T ss_dssp EEEEEEECSSTTSSHHHHH
T ss_pred CceEEEEECCCCCCHHHHH
Confidence 3446778899999999985
No 389
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=61.90 E-value=1.1 Score=37.26 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=20.1
Q ss_pred CCCCCceEEEecccCCCccCCCC
Q 033696 91 PDNRIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 91 ~~~riPvTIiTGfLGsGKtTLLn 113 (113)
.+.++-|+-|.|.-.+||+||||
T Consensus 63 ~~~~v~vVsV~G~~~~GKStLLN 85 (447)
T 3q5d_A 63 RDKEVVAVSVAGAFRKGKSFLMD 85 (447)
T ss_dssp TTSBEEEEEEEESTTSSHHHHHH
T ss_pred CCCceEEEEEECCCCCcHHHHHH
Confidence 35678888889999999999987
No 390
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=61.51 E-value=1.2 Score=38.57 Aligned_cols=20 Identities=35% Similarity=0.752 Sum_probs=17.8
Q ss_pred CCceEEEecccCCCccCCCC
Q 033696 94 RIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 94 riPvTIiTGfLGsGKtTLLn 113 (113)
+.|=.+|.|-.|||||++||
T Consensus 213 k~pHlLIaG~TGSGKS~~L~ 232 (574)
T 2iut_A 213 KMPHLLVAGTTGSGKSVGVN 232 (574)
T ss_dssp GSCCEEEECCTTSSHHHHHH
T ss_pred hCCeeEEECCCCCCHHHHHH
Confidence 47899999999999999864
No 391
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=61.38 E-value=1.8 Score=35.97 Aligned_cols=15 Identities=27% Similarity=0.370 Sum_probs=13.6
Q ss_pred eEEEecccCCCccCC
Q 033696 97 ATIITGFLGSGKNTG 111 (113)
Q Consensus 97 vTIiTGfLGsGKtTL 111 (113)
-+++.|..|+|||||
T Consensus 52 ~iLl~GppGtGKT~l 66 (444)
T 1g41_A 52 NILMIGPTGVGKTEI 66 (444)
T ss_dssp CEEEECCTTSSHHHH
T ss_pred eEEEEcCCCCCHHHH
Confidence 488999999999997
No 392
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=60.61 E-value=1.9 Score=36.14 Aligned_cols=18 Identities=22% Similarity=0.300 Sum_probs=14.6
Q ss_pred CceEEEecccCCCccCCC
Q 033696 95 IPATIITGFLGSGKNTGS 112 (113)
Q Consensus 95 iPvTIiTGfLGsGKtTLL 112 (113)
..-.+++|..|+|||+|.
T Consensus 207 ~~~vlL~G~~GtGKT~la 224 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIA 224 (758)
T ss_dssp SCEEEEECCTTSSHHHHH
T ss_pred CCCeEEEcCCCCCHHHHH
Confidence 344589999999999974
No 393
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=60.33 E-value=2.4 Score=36.56 Aligned_cols=20 Identities=25% Similarity=0.307 Sum_probs=16.3
Q ss_pred CCCCceEEEecccCCCccCC
Q 033696 92 DNRIPATIITGFLGSGKNTG 111 (113)
Q Consensus 92 ~~riPvTIiTGfLGsGKtTL 111 (113)
.+.+...+++|..|.|||+|
T Consensus 585 ~~p~~~vLl~Gp~GtGKT~l 604 (854)
T 1qvr_A 585 NRPIGSFLFLGPTGVGKTEL 604 (854)
T ss_dssp SSCSEEEEEBSCSSSSHHHH
T ss_pred CCCceEEEEECCCCCCHHHH
Confidence 34455689999999999987
No 394
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=59.88 E-value=1.5 Score=37.80 Aligned_cols=18 Identities=22% Similarity=0.252 Sum_probs=14.9
Q ss_pred CceEEEecccCCCccCCC
Q 033696 95 IPATIITGFLGSGKNTGS 112 (113)
Q Consensus 95 iPvTIiTGfLGsGKtTLL 112 (113)
.+-.+++|..|+|||+|+
T Consensus 191 ~~~vlL~G~pG~GKT~la 208 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIV 208 (854)
T ss_dssp CCCCEEEECTTSCHHHHH
T ss_pred CCceEEEcCCCCCHHHHH
Confidence 344689999999999974
No 395
>1j3b_A ATP-dependent phosphoenolpyruvate carboxykinase; adenosine triphosphate, T thermophilus; 2.00A {Thermus thermophilus} SCOP: c.91.1.1 c.109.1.1 PDB: 1xkv_A* 2pc9_A*
Probab=57.64 E-value=2.3 Score=36.65 Aligned_cols=16 Identities=38% Similarity=0.580 Sum_probs=14.8
Q ss_pred eEEEecccCCCccCCC
Q 033696 97 ATIITGFLGSGKNTGS 112 (113)
Q Consensus 97 vTIiTGfLGsGKtTLL 112 (113)
++++.|..|+|||||.
T Consensus 227 ~~~ffGlSGtGKTtLs 242 (529)
T 1j3b_A 227 VAVFFGLSGTGKTTLS 242 (529)
T ss_dssp EEEEEECTTSCHHHHT
T ss_pred EEEEEccccCChhhHh
Confidence 8999999999999984
No 396
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=57.32 E-value=1.5 Score=34.71 Aligned_cols=18 Identities=28% Similarity=0.292 Sum_probs=15.8
Q ss_pred ceEEEecccCCCccCCCC
Q 033696 96 PATIITGFLGSGKNTGSA 113 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLLn 113 (113)
+..++.|.-++|||||+|
T Consensus 22 ~~i~iiG~~d~GKSTL~~ 39 (370)
T 2elf_A 22 ANVAIIGTEKSGRTSLAA 39 (370)
T ss_dssp EEEEEEESTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 378899999999999964
No 397
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=56.81 E-value=2.8 Score=30.78 Aligned_cols=20 Identities=25% Similarity=0.142 Sum_probs=14.6
Q ss_pred CCCCceEEEecccCCCccCC
Q 033696 92 DNRIPATIITGFLGSGKNTG 111 (113)
Q Consensus 92 ~~riPvTIiTGfLGsGKtTL 111 (113)
.++..|+.|+|--|+||||+
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~ 57 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTT 57 (307)
T ss_dssp --CCEEEEEECSTTSSHHHH
T ss_pred cCCceEEEEECCCCccHHHH
Confidence 34556666779999999996
No 398
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=56.77 E-value=2.4 Score=34.92 Aligned_cols=16 Identities=25% Similarity=0.372 Sum_probs=13.7
Q ss_pred eEEEecccCCCccCCC
Q 033696 97 ATIITGFLGSGKNTGS 112 (113)
Q Consensus 97 vTIiTGfLGsGKtTLL 112 (113)
-.+|+|..|.|||+|.
T Consensus 240 ~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 240 GILLYGPPGTGKTLIA 255 (489)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred cEEEECcCCCCHHHHH
Confidence 3788999999999873
No 399
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=55.54 E-value=2.6 Score=34.86 Aligned_cols=15 Identities=27% Similarity=0.395 Sum_probs=13.2
Q ss_pred eEEEecccCCCccCC
Q 033696 97 ATIITGFLGSGKNTG 111 (113)
Q Consensus 97 vTIiTGfLGsGKtTL 111 (113)
=.++.|+.|.|||.|
T Consensus 217 GvLLyGPPGTGKTll 231 (434)
T 4b4t_M 217 GALMYGPPGTGKTLL 231 (434)
T ss_dssp EEEEESCTTSSHHHH
T ss_pred eeEEECcCCCCHHHH
Confidence 378999999999976
No 400
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=55.43 E-value=2.6 Score=34.87 Aligned_cols=15 Identities=27% Similarity=0.388 Sum_probs=13.3
Q ss_pred eEEEecccCCCccCC
Q 033696 97 ATIITGFLGSGKNTG 111 (113)
Q Consensus 97 vTIiTGfLGsGKtTL 111 (113)
=.++.|+.|.|||.|
T Consensus 217 GvLL~GPPGtGKTll 231 (437)
T 4b4t_L 217 GVLLYGPPGTGKTLL 231 (437)
T ss_dssp EEEEESCTTSSHHHH
T ss_pred eEEEECCCCCcHHHH
Confidence 478999999999986
No 401
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=54.54 E-value=1.9 Score=36.54 Aligned_cols=17 Identities=24% Similarity=0.096 Sum_probs=14.8
Q ss_pred eEEEecccCCCccCCCC
Q 033696 97 ATIITGFLGSGKNTGSA 113 (113)
Q Consensus 97 vTIiTGfLGsGKtTLLn 113 (113)
..+|.|..|.|||||+|
T Consensus 153 ~~~i~G~sGvGKTtL~~ 169 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQ 169 (473)
T ss_dssp EEEEECCSSSCHHHHHH
T ss_pred EEEEECCCCCCccHHHH
Confidence 37889999999999964
No 402
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=54.10 E-value=2.8 Score=34.56 Aligned_cols=14 Identities=29% Similarity=0.420 Sum_probs=13.0
Q ss_pred EEEecccCCCccCC
Q 033696 98 TIITGFLGSGKNTG 111 (113)
Q Consensus 98 TIiTGfLGsGKtTL 111 (113)
.++.|+.|.|||.|
T Consensus 209 iLL~GPPGtGKT~l 222 (428)
T 4b4t_K 209 VLLYGPPGTGKTML 222 (428)
T ss_dssp EEEESCTTTTHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 78999999999986
No 403
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=52.82 E-value=4.3 Score=34.25 Aligned_cols=17 Identities=24% Similarity=0.286 Sum_probs=14.3
Q ss_pred CceEEEecccCCCccCC
Q 033696 95 IPATIITGFLGSGKNTG 111 (113)
Q Consensus 95 iPvTIiTGfLGsGKtTL 111 (113)
.+=.+++|..|.|||++
T Consensus 201 ~~~vLL~G~pGtGKT~l 217 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAI 217 (758)
T ss_dssp SCEEEEESCTTTTTHHH
T ss_pred CCCeEEECCCCCCHHHH
Confidence 34468999999999987
No 404
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=52.81 E-value=5.2 Score=26.93 Aligned_cols=13 Identities=23% Similarity=0.337 Sum_probs=11.8
Q ss_pred EEEecccCCCccC
Q 033696 98 TIITGFLGSGKNT 110 (113)
Q Consensus 98 TIiTGfLGsGKtT 110 (113)
+|+.+.-|+|||.
T Consensus 43 ~lv~apTGsGKT~ 55 (206)
T 1vec_A 43 ILARAKNGTGKSG 55 (206)
T ss_dssp EEEECCSSSTTHH
T ss_pred EEEECCCCCchHH
Confidence 7899999999994
No 405
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=52.73 E-value=3.1 Score=34.65 Aligned_cols=15 Identities=20% Similarity=0.173 Sum_probs=12.9
Q ss_pred EEEecccCCCccCCC
Q 033696 98 TIITGFLGSGKNTGS 112 (113)
Q Consensus 98 TIiTGfLGsGKtTLL 112 (113)
.++.|..|.|||+|.
T Consensus 44 VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 44 VFLLGPPGIAKSLIA 58 (500)
T ss_dssp EEEECCSSSSHHHHH
T ss_pred eEeecCchHHHHHHH
Confidence 477999999999873
No 406
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=51.41 E-value=2.2 Score=36.00 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=19.8
Q ss_pred CCCCCceEEEecccCCCccCCCC
Q 033696 91 PDNRIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 91 ~~~riPvTIiTGfLGsGKtTLLn 113 (113)
.+.+|-|+.|.|.-++||++|||
T Consensus 63 ~~~~v~vvsv~G~~~~gks~l~N 85 (457)
T 4ido_A 63 RDKEVVAVSVAGAFRKGKSFLMD 85 (457)
T ss_dssp TTSBEEEEEEEEBTTSSHHHHHH
T ss_pred CCCceEEEEEECCCCCchhHHHH
Confidence 35678888899999999999986
No 407
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=50.83 E-value=4.6 Score=35.51 Aligned_cols=14 Identities=43% Similarity=0.679 Sum_probs=12.5
Q ss_pred eEEEecccCCCccC
Q 033696 97 ATIITGFLGSGKNT 110 (113)
Q Consensus 97 vTIiTGfLGsGKtT 110 (113)
.+||+|-.|||||.
T Consensus 96 sIiisGESGAGKTe 109 (697)
T 1lkx_A 96 CVIISGESGAGKTE 109 (697)
T ss_dssp EEEEECSTTSSHHH
T ss_pred EEEecCCCCCCchh
Confidence 57999999999984
No 408
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=50.70 E-value=5.1 Score=26.92 Aligned_cols=13 Identities=31% Similarity=0.291 Sum_probs=12.0
Q ss_pred EEEecccCCCccC
Q 033696 98 TIITGFLGSGKNT 110 (113)
Q Consensus 98 TIiTGfLGsGKtT 110 (113)
.|+.+.-|+|||.
T Consensus 41 ~li~~~TGsGKT~ 53 (207)
T 2gxq_A 41 LIGQARTGTGKTL 53 (207)
T ss_dssp EEEECCTTSCHHH
T ss_pred EEEECCCCChHHH
Confidence 7899999999995
No 409
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=50.00 E-value=3.7 Score=33.99 Aligned_cols=14 Identities=36% Similarity=0.432 Sum_probs=12.8
Q ss_pred EEEecccCCCccCC
Q 033696 98 TIITGFLGSGKNTG 111 (113)
Q Consensus 98 TIiTGfLGsGKtTL 111 (113)
.++.|+.|.|||.|
T Consensus 185 vLL~GPPGTGKTll 198 (405)
T 4b4t_J 185 VILYGPPGTGKTLL 198 (405)
T ss_dssp EEEESCSSSSHHHH
T ss_pred eEEeCCCCCCHHHH
Confidence 68999999999976
No 410
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=49.91 E-value=4.6 Score=38.42 Aligned_cols=19 Identities=37% Similarity=0.497 Sum_probs=16.9
Q ss_pred CCceEEEecccCCCccCCC
Q 033696 94 RIPATIITGFLGSGKNTGS 112 (113)
Q Consensus 94 riPvTIiTGfLGsGKtTLL 112 (113)
..+|+.|.|.-|.|||||.
T Consensus 149 ~~RVV~IvGmGGIGKTTLA 167 (1221)
T 1vt4_I 149 PAKNVLIDGVLGSGKTWVA 167 (1221)
T ss_dssp SSCEEEECCSTTSSHHHHH
T ss_pred CCeEEEEEcCCCccHHHHH
Confidence 3689999999999999983
No 411
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=48.73 E-value=4.2 Score=39.44 Aligned_cols=15 Identities=40% Similarity=0.215 Sum_probs=14.5
Q ss_pred eEEEecccCCCccCC
Q 033696 97 ATIITGFLGSGKNTG 111 (113)
Q Consensus 97 vTIiTGfLGsGKtTL 111 (113)
+++|.|..|+|||||
T Consensus 385 lilI~G~pGsGKTtL 399 (1706)
T 3cmw_A 385 IVEIYGPESSGKTTL 399 (1706)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEEeCCCCCHHHH
Confidence 899999999999998
No 412
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=48.07 E-value=7.6 Score=30.85 Aligned_cols=16 Identities=31% Similarity=0.387 Sum_probs=14.2
Q ss_pred ceEEEecccCCCccCC
Q 033696 96 PATIITGFLGSGKNTG 111 (113)
Q Consensus 96 PvTIiTGfLGsGKtTL 111 (113)
..+||.+..|||||+.
T Consensus 22 ~~vlv~a~TGsGKT~~ 37 (459)
T 2z83_A 22 QMTVLDLHPGSGKTRK 37 (459)
T ss_dssp CEEEECCCTTSCTTTT
T ss_pred CcEEEECCCCCCHHHH
Confidence 4789999999999984
No 413
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=47.55 E-value=5.8 Score=36.02 Aligned_cols=14 Identities=36% Similarity=0.553 Sum_probs=12.6
Q ss_pred eEEEecccCCCccC
Q 033696 97 ATIITGFLGSGKNT 110 (113)
Q Consensus 97 vTIiTGfLGsGKtT 110 (113)
.+||+|-.|||||.
T Consensus 171 ~i~isGeSGaGKTe 184 (1184)
T 1i84_S 171 SILCTGESGAGKTE 184 (1184)
T ss_dssp EEECCCSTTSSTTH
T ss_pred EEEEecCCCCCccH
Confidence 57999999999994
No 414
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=47.39 E-value=5.6 Score=35.40 Aligned_cols=14 Identities=36% Similarity=0.657 Sum_probs=12.6
Q ss_pred eEEEecccCCCccC
Q 033696 97 ATIITGFLGSGKNT 110 (113)
Q Consensus 97 vTIiTGfLGsGKtT 110 (113)
.+||+|-.|||||.
T Consensus 142 sIiiSGESGAGKTe 155 (784)
T 2v26_A 142 SIIVSGESGAGKTE 155 (784)
T ss_dssp EEEEECSTTSSHHH
T ss_pred EEEEcCCCCCCcee
Confidence 67999999999984
No 415
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=47.06 E-value=5.7 Score=35.67 Aligned_cols=14 Identities=43% Similarity=0.677 Sum_probs=12.5
Q ss_pred eEEEecccCCCccC
Q 033696 97 ATIITGFLGSGKNT 110 (113)
Q Consensus 97 vTIiTGfLGsGKtT 110 (113)
.+||+|-.|||||.
T Consensus 171 sIiiSGESGAGKTe 184 (837)
T 1kk8_A 171 SCLITGESGAGKTE 184 (837)
T ss_dssp EEEEECSTTSSHHH
T ss_pred EEEEeCCCCCCchh
Confidence 57999999999984
No 416
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=46.62 E-value=5.9 Score=35.39 Aligned_cols=14 Identities=36% Similarity=0.660 Sum_probs=12.6
Q ss_pred eEEEecccCCCccC
Q 033696 97 ATIITGFLGSGKNT 110 (113)
Q Consensus 97 vTIiTGfLGsGKtT 110 (113)
-+||+|-.|||||.
T Consensus 158 sIiisGESGAGKTe 171 (795)
T 1w7j_A 158 SIIVSGESGAGKTV 171 (795)
T ss_dssp EEEEECSTTSSHHH
T ss_pred EEEEeCCCCCCcch
Confidence 57999999999994
No 417
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=46.50 E-value=6.5 Score=26.92 Aligned_cols=13 Identities=23% Similarity=0.389 Sum_probs=12.0
Q ss_pred EEEecccCCCccC
Q 033696 98 TIITGFLGSGKNT 110 (113)
Q Consensus 98 TIiTGfLGsGKtT 110 (113)
+|+.+.-|+|||.
T Consensus 54 ~lv~~pTGsGKT~ 66 (224)
T 1qde_A 54 VLAQAQSGTGKTG 66 (224)
T ss_dssp EEEECCTTSSHHH
T ss_pred EEEECCCCCcHHH
Confidence 7999999999995
No 418
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=46.08 E-value=6.9 Score=29.19 Aligned_cols=19 Identities=32% Similarity=0.420 Sum_probs=14.4
Q ss_pred CCCceEEEecc-cCCCccCC
Q 033696 93 NRIPATIITGF-LGSGKNTG 111 (113)
Q Consensus 93 ~riPvTIiTGf-LGsGKtTL 111 (113)
++..++.|||. -|+||||+
T Consensus 80 ~~~kvI~vts~kgG~GKTt~ 99 (271)
T 3bfv_A 80 SAVQSIVITSEAPGAGKSTI 99 (271)
T ss_dssp CCCCEEEEECSSTTSSHHHH
T ss_pred CCCeEEEEECCCCCCcHHHH
Confidence 44567888876 68999986
No 419
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=45.93 E-value=6.1 Score=35.32 Aligned_cols=14 Identities=43% Similarity=0.657 Sum_probs=12.6
Q ss_pred eEEEecccCCCccC
Q 033696 97 ATIITGFLGSGKNT 110 (113)
Q Consensus 97 vTIiTGfLGsGKtT 110 (113)
.+||+|-.|||||.
T Consensus 174 sIiisGESGAGKTe 187 (770)
T 1w9i_A 174 SLLITGESGAGKTE 187 (770)
T ss_dssp EEEEECSTTSSHHH
T ss_pred EEEEecCCCCcchH
Confidence 57999999999994
No 420
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=45.52 E-value=6.3 Score=35.80 Aligned_cols=14 Identities=36% Similarity=0.553 Sum_probs=12.6
Q ss_pred eEEEecccCCCccC
Q 033696 97 ATIITGFLGSGKNT 110 (113)
Q Consensus 97 vTIiTGfLGsGKtT 110 (113)
.+||+|-.|||||.
T Consensus 148 sIiisGESGAGKTe 161 (995)
T 2ycu_A 148 SILCTGESGAGKTE 161 (995)
T ss_dssp EEEEECBTTSSHHH
T ss_pred EEEecCCCCCCchh
Confidence 67999999999984
No 421
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=45.41 E-value=3.1 Score=32.91 Aligned_cols=20 Identities=30% Similarity=0.194 Sum_probs=14.7
Q ss_pred CCCceEEEecccCCCccCCC
Q 033696 93 NRIPATIITGFLGSGKNTGS 112 (113)
Q Consensus 93 ~riPvTIiTGfLGsGKtTLL 112 (113)
++.-=.++-|.-+|||||++
T Consensus 30 ~~~~klLlLG~geSGKST~~ 49 (353)
T 1cip_A 30 AREVKLLLLGAGESGKSTIV 49 (353)
T ss_dssp -CEEEEEEECSTTSSHHHHH
T ss_pred cccceEEEEcCCCCCchhHH
Confidence 33334577899999999985
No 422
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=45.40 E-value=6.8 Score=27.07 Aligned_cols=13 Identities=31% Similarity=0.501 Sum_probs=11.6
Q ss_pred EEEecccCCCccC
Q 033696 98 TIITGFLGSGKNT 110 (113)
Q Consensus 98 TIiTGfLGsGKtT 110 (113)
+|+.+.-|+|||.
T Consensus 60 ~l~~apTGsGKT~ 72 (228)
T 3iuy_A 60 LIVVAQTGTGKTL 72 (228)
T ss_dssp EEEECCTTSCHHH
T ss_pred EEEECCCCChHHH
Confidence 5899999999995
No 423
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=44.82 E-value=6.5 Score=36.06 Aligned_cols=15 Identities=33% Similarity=0.612 Sum_probs=13.0
Q ss_pred ceEEEecccCCCccC
Q 033696 96 PATIITGFLGSGKNT 110 (113)
Q Consensus 96 PvTIiTGfLGsGKtT 110 (113)
-.+||+|-.|||||.
T Consensus 157 QsIiisGESGAGKTe 171 (1080)
T 2dfs_A 157 QSIIVSGESGAGKTV 171 (1080)
T ss_dssp EEEEEECSTTSSHHH
T ss_pred cEEEEcCCCCCCccc
Confidence 367999999999994
No 424
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=44.70 E-value=2.9 Score=36.43 Aligned_cols=17 Identities=24% Similarity=0.290 Sum_probs=14.6
Q ss_pred ceEEEecccCCCccCCC
Q 033696 96 PATIITGFLGSGKNTGS 112 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLL 112 (113)
..+++.|..|+|||||.
T Consensus 512 ~~vLL~GppGtGKT~La 528 (806)
T 1ypw_A 512 KGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp CCCCCBCCTTSSHHHHH
T ss_pred ceeEEECCCCCCHHHHH
Confidence 45789999999999983
No 425
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=44.63 E-value=6.6 Score=35.13 Aligned_cols=15 Identities=40% Similarity=0.627 Sum_probs=13.1
Q ss_pred ceEEEecccCCCccC
Q 033696 96 PATIITGFLGSGKNT 110 (113)
Q Consensus 96 PvTIiTGfLGsGKtT 110 (113)
-.+||+|-.|||||.
T Consensus 172 QsIiiSGESGAGKTe 186 (783)
T 4db1_A 172 QSILITGESGAGKTV 186 (783)
T ss_dssp EEEEEECSTTSSHHH
T ss_pred ceEEEeCCCCCCCch
Confidence 468999999999995
No 426
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=44.44 E-value=7.2 Score=27.10 Aligned_cols=13 Identities=31% Similarity=0.325 Sum_probs=12.0
Q ss_pred EEEecccCCCccC
Q 033696 98 TIITGFLGSGKNT 110 (113)
Q Consensus 98 TIiTGfLGsGKtT 110 (113)
.|+.+.-|+|||.
T Consensus 65 ~li~a~TGsGKT~ 77 (236)
T 2pl3_A 65 VLGAAKTGSGKTL 77 (236)
T ss_dssp EEEECCTTSCHHH
T ss_pred EEEEeCCCCcHHH
Confidence 7899999999996
No 427
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=44.34 E-value=4.7 Score=34.17 Aligned_cols=15 Identities=27% Similarity=0.428 Sum_probs=13.1
Q ss_pred eEEEecccCCCccCC
Q 033696 97 ATIITGFLGSGKNTG 111 (113)
Q Consensus 97 vTIiTGfLGsGKtTL 111 (113)
=.++.|..|.|||.|
T Consensus 245 GILLyGPPGTGKTlL 259 (467)
T 4b4t_H 245 GILLYGPPGTGKTLC 259 (467)
T ss_dssp EEEECSCTTSSHHHH
T ss_pred ceEeeCCCCCcHHHH
Confidence 368999999999976
No 428
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=43.84 E-value=6.1 Score=32.66 Aligned_cols=16 Identities=31% Similarity=0.291 Sum_probs=13.9
Q ss_pred ceEEEecccCCCccCC
Q 033696 96 PATIITGFLGSGKNTG 111 (113)
Q Consensus 96 PvTIiTGfLGsGKtTL 111 (113)
..+||.|..|||||+.
T Consensus 47 ~~~lv~apTGsGKT~~ 62 (715)
T 2va8_A 47 NRLLLTSPTGSGKTLI 62 (715)
T ss_dssp CCEEEECCTTSCHHHH
T ss_pred CcEEEEcCCCCcHHHH
Confidence 3689999999999974
No 429
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=43.82 E-value=6.6 Score=35.88 Aligned_cols=14 Identities=43% Similarity=0.657 Sum_probs=12.6
Q ss_pred eEEEecccCCCccC
Q 033696 97 ATIITGFLGSGKNT 110 (113)
Q Consensus 97 vTIiTGfLGsGKtT 110 (113)
.+||+|-.|||||.
T Consensus 174 sIiisGESGAGKTe 187 (1010)
T 1g8x_A 174 SLLITGESGAGKTE 187 (1010)
T ss_dssp EEEEEESTTSSHHH
T ss_pred EEEEeCCCCCCcch
Confidence 57999999999994
No 430
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=43.24 E-value=6.9 Score=30.60 Aligned_cols=19 Identities=37% Similarity=0.464 Sum_probs=15.8
Q ss_pred CCCCceEEEecccCCCccCC
Q 033696 92 DNRIPATIITGFLGSGKNTG 111 (113)
Q Consensus 92 ~~riPvTIiTGfLGsGKtTL 111 (113)
....|| +|+|..|.||+++
T Consensus 158 ~~~~~v-li~Ge~GtGK~~l 176 (387)
T 1ny5_A 158 CAECPV-LITGESGVGKEVV 176 (387)
T ss_dssp TCCSCE-EEECSTTSSHHHH
T ss_pred CCCCCe-EEecCCCcCHHHH
Confidence 356788 8999999999875
No 431
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=43.15 E-value=5.3 Score=35.69 Aligned_cols=16 Identities=25% Similarity=0.372 Sum_probs=13.9
Q ss_pred eEEEecccCCCccCCC
Q 033696 97 ATIITGFLGSGKNTGS 112 (113)
Q Consensus 97 vTIiTGfLGsGKtTLL 112 (113)
=++++|..|.|||+|.
T Consensus 240 GILL~GPPGTGKT~LA 255 (806)
T 3cf2_A 240 GILLYGPPGTGKTLIA 255 (806)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3789999999999873
No 432
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=43.00 E-value=7.4 Score=29.42 Aligned_cols=19 Identities=32% Similarity=0.233 Sum_probs=14.5
Q ss_pred CCCceEEEecc-cCCCccCC
Q 033696 93 NRIPATIITGF-LGSGKNTG 111 (113)
Q Consensus 93 ~riPvTIiTGf-LGsGKtTL 111 (113)
++..|+.|||. -|+||||+
T Consensus 102 ~~~kvI~vts~kgG~GKTtv 121 (299)
T 3cio_A 102 TENNILMITGATPDSGKTFV 121 (299)
T ss_dssp CSCCEEEEEESSSSSCHHHH
T ss_pred CCCeEEEEECCCCCCChHHH
Confidence 34457888887 58999986
No 433
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=42.56 E-value=7.4 Score=35.98 Aligned_cols=14 Identities=36% Similarity=0.657 Sum_probs=12.8
Q ss_pred eEEEecccCCCccC
Q 033696 97 ATIITGFLGSGKNT 110 (113)
Q Consensus 97 vTIiTGfLGsGKtT 110 (113)
.+||+|-.|||||.
T Consensus 146 sIiiSGESGAGKTe 159 (1052)
T 4anj_A 146 SIIVSGESGAGKTE 159 (1052)
T ss_dssp EEEEECSTTSSHHH
T ss_pred eEEEecCCCCCHHH
Confidence 68999999999984
No 434
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=42.06 E-value=5.1 Score=28.61 Aligned_cols=19 Identities=26% Similarity=0.191 Sum_probs=12.3
Q ss_pred CCCceEEE-ecccCCCccCC
Q 033696 93 NRIPATII-TGFLGSGKNTG 111 (113)
Q Consensus 93 ~riPvTIi-TGfLGsGKtTL 111 (113)
++..|+.| .+--|+||||+
T Consensus 25 ~~~~vI~v~s~kGGvGKTT~ 44 (267)
T 3k9g_A 25 KKPKIITIASIKGGVGKSTS 44 (267)
T ss_dssp -CCEEEEECCSSSSSCHHHH
T ss_pred CCCeEEEEEeCCCCchHHHH
Confidence 33445444 56678999996
No 435
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=41.82 E-value=3.9 Score=34.68 Aligned_cols=15 Identities=20% Similarity=0.076 Sum_probs=13.1
Q ss_pred EEEecccCCCccCCC
Q 033696 98 TIITGFLGSGKNTGS 112 (113)
Q Consensus 98 TIiTGfLGsGKtTLL 112 (113)
..|.|..|+|||||+
T Consensus 177 ~~IvG~sG~GKTtLl 191 (422)
T 3ice_A 177 GLIVAPPKAGKTMLL 191 (422)
T ss_dssp EEEECCSSSSHHHHH
T ss_pred EEEecCCCCChhHHH
Confidence 467899999999986
No 436
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=41.66 E-value=6.2 Score=39.04 Aligned_cols=15 Identities=40% Similarity=0.215 Sum_probs=14.6
Q ss_pred eEEEecccCCCccCC
Q 033696 97 ATIITGFLGSGKNTG 111 (113)
Q Consensus 97 vTIiTGfLGsGKtTL 111 (113)
+++|.|..|+|||||
T Consensus 385 lilI~G~pGsGKTtL 399 (2050)
T 3cmu_A 385 IVEIYGPESSGKTTL 399 (2050)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEEeCCCCCHHHH
Confidence 999999999999998
No 437
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=41.59 E-value=6.3 Score=38.25 Aligned_cols=16 Identities=38% Similarity=0.233 Sum_probs=14.9
Q ss_pred eEEEecccCCCccCCC
Q 033696 97 ATIITGFLGSGKNTGS 112 (113)
Q Consensus 97 vTIiTGfLGsGKtTLL 112 (113)
+++|.|..|+|||||+
T Consensus 734 lVlI~G~PG~GKTtLa 749 (1706)
T 3cmw_A 734 IVEIYGPESSGKTTLT 749 (1706)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred eEEEECCCCCCcHHHH
Confidence 8999999999999983
No 438
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=40.34 E-value=9.2 Score=27.34 Aligned_cols=15 Identities=27% Similarity=0.390 Sum_probs=12.9
Q ss_pred eEEEecccCCCccCC
Q 033696 97 ATIITGFLGSGKNTG 111 (113)
Q Consensus 97 vTIiTGfLGsGKtTL 111 (113)
-+|+.+.-|+|||..
T Consensus 46 ~~l~~~~TGsGKT~~ 60 (367)
T 1hv8_A 46 NIVAQARTGSGKTAS 60 (367)
T ss_dssp EEEEECCSSSSHHHH
T ss_pred CEEEECCCCChHHHH
Confidence 578999999999963
No 439
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=40.30 E-value=4.6 Score=27.02 Aligned_cols=15 Identities=40% Similarity=0.284 Sum_probs=12.8
Q ss_pred eEEEecccCCCccCC
Q 033696 97 ATIITGFLGSGKNTG 111 (113)
Q Consensus 97 vTIiTGfLGsGKtTL 111 (113)
-.||.+.-|+|||..
T Consensus 50 ~~li~~~tGsGKT~~ 64 (216)
T 3b6e_A 50 NIIICLPTGSGKTRV 64 (216)
T ss_dssp CEEEECSCHHHHHHH
T ss_pred CEEEEcCCCCCHHHH
Confidence 378999999999963
No 440
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=39.44 E-value=7.2 Score=30.15 Aligned_cols=16 Identities=31% Similarity=0.268 Sum_probs=13.3
Q ss_pred ceEEEecccCCCccCC
Q 033696 96 PATIITGFLGSGKNTG 111 (113)
Q Consensus 96 PvTIiTGfLGsGKtTL 111 (113)
-|.|+.|--|.||||+
T Consensus 27 ~i~v~sgKGGvGKTTv 42 (349)
T 3ug7_A 27 KYIMFGGKGGVGKTTM 42 (349)
T ss_dssp EEEEEECSSSTTHHHH
T ss_pred EEEEEeCCCCccHHHH
Confidence 3677788899999996
No 441
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=38.73 E-value=10 Score=26.90 Aligned_cols=13 Identities=31% Similarity=0.554 Sum_probs=12.0
Q ss_pred EEEecccCCCccC
Q 033696 98 TIITGFLGSGKNT 110 (113)
Q Consensus 98 TIiTGfLGsGKtT 110 (113)
.|+.+.-|+|||.
T Consensus 34 ~lv~~~TGsGKT~ 46 (337)
T 2z0m_A 34 VVVRAKTGSGKTA 46 (337)
T ss_dssp EEEECCTTSSHHH
T ss_pred EEEEcCCCCcHHH
Confidence 8899999999995
No 442
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=38.47 E-value=6.9 Score=32.95 Aligned_cols=14 Identities=36% Similarity=0.468 Sum_probs=12.9
Q ss_pred EEEecccCCCccCC
Q 033696 98 TIITGFLGSGKNTG 111 (113)
Q Consensus 98 TIiTGfLGsGKtTL 111 (113)
.++.|+.|.|||.|
T Consensus 219 vLLyGPPGTGKTlL 232 (437)
T 4b4t_I 219 VILYGAPGTGKTLL 232 (437)
T ss_dssp EEEESSTTTTHHHH
T ss_pred CceECCCCchHHHH
Confidence 78999999999976
No 443
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=38.36 E-value=10 Score=26.48 Aligned_cols=13 Identities=31% Similarity=0.396 Sum_probs=11.7
Q ss_pred EEEecccCCCccC
Q 033696 98 TIITGFLGSGKNT 110 (113)
Q Consensus 98 TIiTGfLGsGKtT 110 (113)
+|+.+.-|+|||.
T Consensus 69 ~l~~a~TGsGKT~ 81 (245)
T 3dkp_A 69 LLASAPTGSGKTL 81 (245)
T ss_dssp EEEECCTTSCHHH
T ss_pred EEEECCCCCcHHH
Confidence 6899999999995
No 444
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=38.23 E-value=5.6 Score=33.70 Aligned_cols=16 Identities=38% Similarity=0.422 Sum_probs=11.8
Q ss_pred ceEEEecccCCCccCCC
Q 033696 96 PATIITGFLGSGKNTGS 112 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLL 112 (113)
|+ +|.|--|||||+.|
T Consensus 26 ~~-lV~AgAGSGKT~vL 41 (724)
T 1pjr_A 26 PL-LIMAGAGSGKTRVL 41 (724)
T ss_dssp CE-EEEECTTSCHHHHH
T ss_pred CE-EEEEcCCCCHHHHH
Confidence 55 45577799999864
No 445
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=38.03 E-value=10 Score=25.88 Aligned_cols=13 Identities=23% Similarity=0.332 Sum_probs=11.8
Q ss_pred EEEecccCCCccC
Q 033696 98 TIITGFLGSGKNT 110 (113)
Q Consensus 98 TIiTGfLGsGKtT 110 (113)
.|+.+.-|+|||.
T Consensus 54 ~li~~~TGsGKT~ 66 (220)
T 1t6n_A 54 VLCQAKSGMGKTA 66 (220)
T ss_dssp EEEECCTTSCHHH
T ss_pred EEEECCCCCchhh
Confidence 7899999999995
No 446
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=37.78 E-value=7.8 Score=38.39 Aligned_cols=15 Identities=40% Similarity=0.215 Sum_probs=14.5
Q ss_pred eEEEecccCCCccCC
Q 033696 97 ATIITGFLGSGKNTG 111 (113)
Q Consensus 97 vTIiTGfLGsGKtTL 111 (113)
+|.|+|..|+|||+|
T Consensus 36 vtlI~G~pGsGKT~l 50 (2050)
T 3cmu_A 36 IVEIYGPESSGKTTL 50 (2050)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEEeCCCCCHHHH
Confidence 899999999999997
No 447
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=37.74 E-value=5.8 Score=35.99 Aligned_cols=17 Identities=24% Similarity=0.329 Sum_probs=13.9
Q ss_pred ceEEEecccCCCccCCC
Q 033696 96 PATIITGFLGSGKNTGS 112 (113)
Q Consensus 96 PvTIiTGfLGsGKtTLL 112 (113)
.-++|.|--|||||+.|
T Consensus 24 ~~~~v~a~AGSGKT~vl 40 (1232)
T 3u4q_A 24 QDILVAAAAGSGKTAVL 40 (1232)
T ss_dssp SCEEEEECTTCCHHHHH
T ss_pred CCEEEEecCCCcHHHHH
Confidence 35688899999999864
No 448
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=37.02 E-value=11 Score=27.28 Aligned_cols=14 Identities=29% Similarity=0.406 Sum_probs=12.3
Q ss_pred eEEEecccCCCccC
Q 033696 97 ATIITGFLGSGKNT 110 (113)
Q Consensus 97 vTIiTGfLGsGKtT 110 (113)
-+|+.+.-|+|||.
T Consensus 46 ~~lv~a~TGsGKT~ 59 (395)
T 3pey_A 46 NMIAQSQSGTGKTA 59 (395)
T ss_dssp CEEEECCTTSCHHH
T ss_pred eEEEECCCCCcHHH
Confidence 37899999999995
No 449
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=36.93 E-value=7.2 Score=32.78 Aligned_cols=15 Identities=27% Similarity=0.279 Sum_probs=13.1
Q ss_pred EEEecccCCCccCCC
Q 033696 98 TIITGFLGSGKNTGS 112 (113)
Q Consensus 98 TIiTGfLGsGKtTLL 112 (113)
.++.|..|.|||+|+
T Consensus 330 vLL~GppGtGKT~LA 344 (595)
T 3f9v_A 330 ILIIGDPGTAKSQML 344 (595)
T ss_dssp EEEEESSCCTHHHHH
T ss_pred eEEECCCchHHHHHH
Confidence 578999999999874
No 450
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=36.70 E-value=10 Score=26.62 Aligned_cols=13 Identities=31% Similarity=0.319 Sum_probs=11.5
Q ss_pred EEEecccCCCccC
Q 033696 98 TIITGFLGSGKNT 110 (113)
Q Consensus 98 TIiTGfLGsGKtT 110 (113)
+|+.+.-|+|||.
T Consensus 69 ~l~~apTGsGKT~ 81 (242)
T 3fe2_A 69 MVGVAQTGSGKTL 81 (242)
T ss_dssp EEEEECTTSCHHH
T ss_pred EEEECCCcCHHHH
Confidence 6888999999995
No 451
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=36.12 E-value=8.1 Score=30.16 Aligned_cols=15 Identities=20% Similarity=0.160 Sum_probs=13.8
Q ss_pred eEEEecccCCCccCC
Q 033696 97 ATIITGFLGSGKNTG 111 (113)
Q Consensus 97 vTIiTGfLGsGKtTL 111 (113)
-.++.|..|.|||.|
T Consensus 106 ~~~l~GppgtGKt~~ 120 (267)
T 1u0j_A 106 TIWLFGPATTGKTNI 120 (267)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 689999999999976
No 452
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=35.99 E-value=12 Score=26.15 Aligned_cols=13 Identities=31% Similarity=0.483 Sum_probs=11.7
Q ss_pred EEEecccCCCccC
Q 033696 98 TIITGFLGSGKNT 110 (113)
Q Consensus 98 TIiTGfLGsGKtT 110 (113)
+|+.+.-|+|||.
T Consensus 64 ~l~~a~TGsGKT~ 76 (230)
T 2oxc_A 64 LIVQAKSGTGKTC 76 (230)
T ss_dssp EEEECCTTSSHHH
T ss_pred EEEECCCCCcHHH
Confidence 7889999999995
No 453
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=35.96 E-value=6.9 Score=27.58 Aligned_cols=13 Identities=31% Similarity=0.463 Sum_probs=11.9
Q ss_pred EEEecccCCCccC
Q 033696 98 TIITGFLGSGKNT 110 (113)
Q Consensus 98 TIiTGfLGsGKtT 110 (113)
+|+.+.-|+|||.
T Consensus 70 ~li~apTGsGKT~ 82 (237)
T 3bor_A 70 VIAQAQSGTGKTA 82 (237)
T ss_dssp EEECCCSSHHHHH
T ss_pred EEEECCCCCcHHH
Confidence 7899999999994
No 454
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=35.68 E-value=12 Score=26.33 Aligned_cols=13 Identities=31% Similarity=0.435 Sum_probs=11.7
Q ss_pred EEEecccCCCccC
Q 033696 98 TIITGFLGSGKNT 110 (113)
Q Consensus 98 TIiTGfLGsGKtT 110 (113)
+|+.+.-|+|||.
T Consensus 63 ~l~~a~TGsGKT~ 75 (253)
T 1wrb_A 63 IMACAQTGSGKTA 75 (253)
T ss_dssp EEEECCTTSSHHH
T ss_pred EEEECCCCChHHH
Confidence 7889999999995
No 455
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=35.63 E-value=12 Score=27.46 Aligned_cols=14 Identities=29% Similarity=0.389 Sum_probs=12.3
Q ss_pred eEEEecccCCCccC
Q 033696 97 ATIITGFLGSGKNT 110 (113)
Q Consensus 97 vTIiTGfLGsGKtT 110 (113)
-+|+.+.-|+|||.
T Consensus 66 ~~lv~apTGsGKT~ 79 (412)
T 3fht_A 66 NLIAQSQSGTGKTA 79 (412)
T ss_dssp CEEEECCTTSCHHH
T ss_pred eEEEECCCCchHHH
Confidence 47899999999995
No 456
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=35.39 E-value=9.2 Score=27.68 Aligned_cols=13 Identities=31% Similarity=0.386 Sum_probs=11.8
Q ss_pred EEEecccCCCccC
Q 033696 98 TIITGFLGSGKNT 110 (113)
Q Consensus 98 TIiTGfLGsGKtT 110 (113)
+|+.+.-|+|||.
T Consensus 94 ~lv~a~TGsGKT~ 106 (262)
T 3ly5_A 94 LLAAAKTGSGKTL 106 (262)
T ss_dssp CEECCCTTSCHHH
T ss_pred EEEEccCCCCchH
Confidence 6899999999995
No 457
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=35.27 E-value=13 Score=27.32 Aligned_cols=13 Identities=31% Similarity=0.463 Sum_probs=12.0
Q ss_pred EEEecccCCCccC
Q 033696 98 TIITGFLGSGKNT 110 (113)
Q Consensus 98 TIiTGfLGsGKtT 110 (113)
+|+.+.-|+|||.
T Consensus 80 ~lv~a~TGsGKT~ 92 (414)
T 3eiq_A 80 VIAQAQSGTGKTA 92 (414)
T ss_dssp EEECCCSCSSSHH
T ss_pred EEEECCCCCcccH
Confidence 7999999999996
No 458
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=34.43 E-value=13 Score=27.54 Aligned_cols=13 Identities=31% Similarity=0.417 Sum_probs=11.8
Q ss_pred EEEecccCCCccC
Q 033696 98 TIITGFLGSGKNT 110 (113)
Q Consensus 98 TIiTGfLGsGKtT 110 (113)
+|+.+..|+|||.
T Consensus 55 ~lv~a~TGsGKT~ 67 (417)
T 2i4i_A 55 LMACAQTGSGKTA 67 (417)
T ss_dssp EEEECCTTSCHHH
T ss_pred EEEEcCCCCHHHH
Confidence 6899999999995
No 459
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=34.11 E-value=13 Score=26.70 Aligned_cols=13 Identities=38% Similarity=0.281 Sum_probs=11.8
Q ss_pred EEEecccCCCccC
Q 033696 98 TIITGFLGSGKNT 110 (113)
Q Consensus 98 TIiTGfLGsGKtT 110 (113)
+|+.+.-|+|||.
T Consensus 83 ~lv~a~TGsGKT~ 95 (249)
T 3ber_A 83 IIGLAETGSGKTG 95 (249)
T ss_dssp EEEECCTTSCHHH
T ss_pred EEEEcCCCCCchh
Confidence 7889999999995
No 460
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=33.76 E-value=13 Score=28.09 Aligned_cols=19 Identities=16% Similarity=0.125 Sum_probs=13.4
Q ss_pred CCCceEEEecc-cCCCccCC
Q 033696 93 NRIPATIITGF-LGSGKNTG 111 (113)
Q Consensus 93 ~riPvTIiTGf-LGsGKtTL 111 (113)
++..|+.|||. -|+||||+
T Consensus 90 ~~~kvI~vts~kgG~GKTtv 109 (286)
T 3la6_A 90 AQNNVLMMTGVSPSIGMTFV 109 (286)
T ss_dssp TTCCEEEEEESSSSSSHHHH
T ss_pred CCCeEEEEECCCCCCcHHHH
Confidence 34456666665 68999996
No 461
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=33.58 E-value=8.5 Score=26.49 Aligned_cols=13 Identities=23% Similarity=0.325 Sum_probs=11.6
Q ss_pred EEEecccCCCccC
Q 033696 98 TIITGFLGSGKNT 110 (113)
Q Consensus 98 TIiTGfLGsGKtT 110 (113)
.|+.+.-|+|||.
T Consensus 44 ~lv~a~TGsGKT~ 56 (219)
T 1q0u_A 44 MVGQSQTGTGKTH 56 (219)
T ss_dssp EEEECCSSHHHHH
T ss_pred EEEECCCCChHHH
Confidence 6889999999995
No 462
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=32.96 E-value=13 Score=26.79 Aligned_cols=14 Identities=36% Similarity=0.188 Sum_probs=12.5
Q ss_pred EEEecccCCCccCC
Q 033696 98 TIITGFLGSGKNTG 111 (113)
Q Consensus 98 TIiTGfLGsGKtTL 111 (113)
.||.|.-|+|||.+
T Consensus 111 ~ll~~~tG~GKT~~ 124 (237)
T 2fz4_A 111 GCIVLPTGSGKTHV 124 (237)
T ss_dssp EEEEESSSTTHHHH
T ss_pred EEEEeCCCCCHHHH
Confidence 88999999999964
No 463
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=32.23 E-value=11 Score=31.41 Aligned_cols=16 Identities=25% Similarity=0.119 Sum_probs=13.7
Q ss_pred ceEEEecccCCCccCC
Q 033696 96 PATIITGFLGSGKNTG 111 (113)
Q Consensus 96 PvTIiTGfLGsGKtTL 111 (113)
..+||.|.-|||||+.
T Consensus 40 ~~~lv~apTGsGKT~~ 55 (720)
T 2zj8_A 40 KNALISIPTASGKTLI 55 (720)
T ss_dssp CEEEEECCGGGCHHHH
T ss_pred CcEEEEcCCccHHHHH
Confidence 3589999999999963
No 464
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=32.12 E-value=14 Score=27.13 Aligned_cols=13 Identities=23% Similarity=0.371 Sum_probs=12.0
Q ss_pred EEEecccCCCccC
Q 033696 98 TIITGFLGSGKNT 110 (113)
Q Consensus 98 TIiTGfLGsGKtT 110 (113)
+|+.+.-|+|||.
T Consensus 61 ~li~a~TGsGKT~ 73 (400)
T 1s2m_A 61 ILARAKNGTGKTA 73 (400)
T ss_dssp EEEECCTTSCHHH
T ss_pred EEEECCCCcHHHH
Confidence 7899999999995
No 465
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=31.86 E-value=13 Score=32.06 Aligned_cols=15 Identities=27% Similarity=0.242 Sum_probs=13.4
Q ss_pred ceEEEecccCCCccC
Q 033696 96 PATIITGFLGSGKNT 110 (113)
Q Consensus 96 PvTIiTGfLGsGKtT 110 (113)
-++|+.|.-|||||+
T Consensus 156 k~vlv~apTGSGKT~ 170 (677)
T 3rc3_A 156 KIIFHSGPTNSGKTY 170 (677)
T ss_dssp EEEEEECCTTSSHHH
T ss_pred CEEEEEcCCCCCHHH
Confidence 378999999999996
No 466
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=31.48 E-value=6.7 Score=32.01 Aligned_cols=20 Identities=25% Similarity=0.159 Sum_probs=14.9
Q ss_pred CCCceEEEecccCCCccCCC
Q 033696 93 NRIPATIITGFLGSGKNTGS 112 (113)
Q Consensus 93 ~riPvTIiTGfLGsGKtTLL 112 (113)
++.-=.++-|.-+|||+|++
T Consensus 38 ~~~~klLLLG~geSGKSTi~ 57 (402)
T 1azs_C 38 RATHRLLLLGAGESGKSTIV 57 (402)
T ss_dssp TTEEEEEEEESTTSSHHHHH
T ss_pred hccceEEEecCCCCchhhHH
Confidence 33344577799999999985
No 467
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=31.26 E-value=15 Score=28.34 Aligned_cols=15 Identities=27% Similarity=0.359 Sum_probs=12.9
Q ss_pred ceEEEecccCCCccC
Q 033696 96 PATIITGFLGSGKNT 110 (113)
Q Consensus 96 PvTIiTGfLGsGKtT 110 (113)
--+|+.|.-|||||.
T Consensus 132 ~~~l~~a~TGsGKT~ 146 (479)
T 3fmp_B 132 QNLIAQSQSGTGKTA 146 (479)
T ss_dssp CEEEEECCSSSSHHH
T ss_pred CcEEEEcCCCCchhH
Confidence 357999999999995
No 468
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=30.62 E-value=16 Score=27.09 Aligned_cols=13 Identities=31% Similarity=0.460 Sum_probs=11.9
Q ss_pred EEEecccCCCccC
Q 033696 98 TIITGFLGSGKNT 110 (113)
Q Consensus 98 TIiTGfLGsGKtT 110 (113)
+|+.+.-|+|||.
T Consensus 77 ~lv~a~TGsGKT~ 89 (410)
T 2j0s_A 77 VIAQSQSGTGKTA 89 (410)
T ss_dssp EEEECCTTSSHHH
T ss_pred EEEECCCCCCchH
Confidence 7899999999994
No 469
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=30.42 E-value=9.7 Score=36.41 Aligned_cols=21 Identities=24% Similarity=0.167 Sum_probs=16.8
Q ss_pred CCCceEEEecccCCCccCCCC
Q 033696 93 NRIPATIITGFLGSGKNTGSA 113 (113)
Q Consensus 93 ~riPvTIiTGfLGsGKtTLLn 113 (113)
+...-++|.|.-++|||||+|
T Consensus 294 k~~lnIvIIGhvDvGKSTLIn 314 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTA 314 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHH
T ss_pred CCeeEEEEEcCCCCCHHHHHH
Confidence 344567899999999999964
No 470
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=29.22 E-value=8.1 Score=32.03 Aligned_cols=15 Identities=13% Similarity=0.051 Sum_probs=13.3
Q ss_pred eEEEecccCCCccCC
Q 033696 97 ATIITGFLGSGKNTG 111 (113)
Q Consensus 97 vTIiTGfLGsGKtTL 111 (113)
.+||.|..|||||+.
T Consensus 42 ~~lv~apTGsGKT~~ 56 (702)
T 2p6r_A 42 NLLLAMPTAAGKTLL 56 (702)
T ss_dssp CEEEECSSHHHHHHH
T ss_pred cEEEEcCCccHHHHH
Confidence 579999999999974
No 471
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=28.84 E-value=15 Score=27.70 Aligned_cols=13 Identities=31% Similarity=0.348 Sum_probs=11.9
Q ss_pred EEEecccCCCccC
Q 033696 98 TIITGFLGSGKNT 110 (113)
Q Consensus 98 TIiTGfLGsGKtT 110 (113)
+|+.+.-|+|||.
T Consensus 39 ~lv~apTGsGKT~ 51 (414)
T 3oiy_A 39 FTMVAPTGVGKTT 51 (414)
T ss_dssp EECCSCSSSSHHH
T ss_pred EEEEeCCCCCHHH
Confidence 7899999999996
No 472
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=28.57 E-value=18 Score=26.29 Aligned_cols=13 Identities=23% Similarity=0.332 Sum_probs=11.9
Q ss_pred EEEecccCCCccC
Q 033696 98 TIITGFLGSGKNT 110 (113)
Q Consensus 98 TIiTGfLGsGKtT 110 (113)
.|+.+.-|+|||.
T Consensus 48 ~lv~a~TGsGKT~ 60 (391)
T 1xti_A 48 VLCQAKSGMGKTA 60 (391)
T ss_dssp EEEECSSCSSHHH
T ss_pred EEEECCCCCcHHH
Confidence 7899999999995
No 473
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=28.14 E-value=16 Score=26.40 Aligned_cols=13 Identities=15% Similarity=0.207 Sum_probs=11.5
Q ss_pred EEEecccCCCccC
Q 033696 98 TIITGFLGSGKNT 110 (113)
Q Consensus 98 TIiTGfLGsGKtT 110 (113)
.||.+.-|+|||.
T Consensus 131 ~ll~~~tGsGKT~ 143 (282)
T 1rif_A 131 RILNLPTSAGRSL 143 (282)
T ss_dssp EEECCCTTSCHHH
T ss_pred eEEEcCCCCCcHH
Confidence 4889999999995
No 474
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=28.02 E-value=19 Score=26.89 Aligned_cols=13 Identities=31% Similarity=0.427 Sum_probs=11.7
Q ss_pred EEEecccCCCccC
Q 033696 98 TIITGFLGSGKNT 110 (113)
Q Consensus 98 TIiTGfLGsGKtT 110 (113)
+|+.+.-|||||.
T Consensus 134 ~l~~a~TGsGKT~ 146 (300)
T 3fmo_B 134 LIAQSQSGTGKTA 146 (300)
T ss_dssp EEEECCTTSSHHH
T ss_pred EEEECCCCCCccH
Confidence 7899999999994
No 475
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=26.95 E-value=16 Score=26.43 Aligned_cols=10 Identities=30% Similarity=-0.027 Sum_probs=8.8
Q ss_pred cccCCCccCC
Q 033696 102 GFLGSGKNTG 111 (113)
Q Consensus 102 GfLGsGKtTL 111 (113)
+--|.||||+
T Consensus 44 ~KGGvGKTT~ 53 (298)
T 2oze_A 44 FKGGVGKSKL 53 (298)
T ss_dssp SSSSSSHHHH
T ss_pred CCCCchHHHH
Confidence 5889999996
No 476
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=26.85 E-value=18 Score=27.89 Aligned_cols=15 Identities=13% Similarity=0.040 Sum_probs=4.6
Q ss_pred eEEEecccCCCccCC
Q 033696 97 ATIITGFLGSGKNTG 111 (113)
Q Consensus 97 vTIiTGfLGsGKtTL 111 (113)
|.|+.|-=|.||||+
T Consensus 114 Iav~s~KGGvGKTT~ 128 (403)
T 3ez9_A 114 IFVVNLKGGVSKTVS 128 (403)
T ss_dssp EEECCC--------C
T ss_pred EEEEcCCCCchHHHH
Confidence 556668889999997
No 477
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=25.97 E-value=24 Score=28.13 Aligned_cols=15 Identities=27% Similarity=0.277 Sum_probs=12.9
Q ss_pred ceEEEecccCCCccC
Q 033696 96 PATIITGFLGSGKNT 110 (113)
Q Consensus 96 PvTIiTGfLGsGKtT 110 (113)
--+||.+.-|+|||.
T Consensus 159 ~~~ll~apTGsGKT~ 173 (508)
T 3fho_A 159 RNMIGQSQSGTGKTA 173 (508)
T ss_dssp CCEEEECCSSTTSHH
T ss_pred CCEEEECCCCccHHH
Confidence 357999999999995
No 478
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=25.21 E-value=16 Score=28.09 Aligned_cols=20 Identities=25% Similarity=0.317 Sum_probs=13.7
Q ss_pred CCCCceEEEe-cccCCCccCC
Q 033696 92 DNRIPATIIT-GFLGSGKNTG 111 (113)
Q Consensus 92 ~~riPvTIiT-GfLGsGKtTL 111 (113)
+++..++.|+ |--|.||||+
T Consensus 140 ~~~~kvIav~s~KGGvGKTT~ 160 (373)
T 3fkq_A 140 NDKSSVVIFTSPCGGVGTSTV 160 (373)
T ss_dssp TTSCEEEEEECSSTTSSHHHH
T ss_pred CCCceEEEEECCCCCChHHHH
Confidence 3444555554 6889999996
No 479
>4epp_A Poly(ADP-ribose) glycohydrolase; marco domain, PAR; HET: APR; 1.95A {Tetrahymena thermophila} PDB: 4epq_A*
Probab=24.88 E-value=27 Score=30.04 Aligned_cols=13 Identities=46% Similarity=0.475 Sum_probs=11.4
Q ss_pred CceEEEecccCCC
Q 033696 95 IPATIITGFLGSG 107 (113)
Q Consensus 95 iPvTIiTGfLGsG 107 (113)
-+..|.||.||+|
T Consensus 377 ~~~~IaTGnWGCG 389 (477)
T 4epp_A 377 QLKTISTGKWGCG 389 (477)
T ss_dssp TCCEEEECSTTSS
T ss_pred CCCeeEecCcCcc
Confidence 4588999999999
No 480
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=24.33 E-value=24 Score=25.65 Aligned_cols=14 Identities=29% Similarity=0.240 Sum_probs=12.3
Q ss_pred eEEEecccCCCccC
Q 033696 97 ATIITGFLGSGKNT 110 (113)
Q Consensus 97 vTIiTGfLGsGKtT 110 (113)
-.||.+.-|+|||.
T Consensus 25 ~~ll~~~tG~GKT~ 38 (494)
T 1wp9_A 25 NCLIVLPTGLGKTL 38 (494)
T ss_dssp CEEEECCTTSCHHH
T ss_pred CEEEEcCCCCCHHH
Confidence 57899999999995
No 481
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=24.25 E-value=24 Score=27.12 Aligned_cols=13 Identities=38% Similarity=0.286 Sum_probs=12.0
Q ss_pred EEEecccCCCccC
Q 033696 98 TIITGFLGSGKNT 110 (113)
Q Consensus 98 TIiTGfLGsGKtT 110 (113)
.||.+.-|+|||.
T Consensus 111 ~ll~~~TGsGKT~ 123 (472)
T 2fwr_A 111 GCIVLPTGSGKTH 123 (472)
T ss_dssp EEEECCTTSCHHH
T ss_pred EEEEeCCCCCHHH
Confidence 8999999999995
No 482
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=24.08 E-value=12 Score=37.73 Aligned_cols=15 Identities=33% Similarity=0.463 Sum_probs=12.8
Q ss_pred EEEecccCCCccCCC
Q 033696 98 TIITGFLGSGKNTGS 112 (113)
Q Consensus 98 TIiTGfLGsGKtTLL 112 (113)
++|.|..|+||||++
T Consensus 926 vmlvGptgsGKTt~~ 940 (2695)
T 4akg_A 926 LILVGKAGCGKTATW 940 (2695)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 577899999999974
No 483
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=24.00 E-value=15 Score=26.74 Aligned_cols=13 Identities=23% Similarity=0.389 Sum_probs=11.8
Q ss_pred EEEecccCCCccC
Q 033696 98 TIITGFLGSGKNT 110 (113)
Q Consensus 98 TIiTGfLGsGKtT 110 (113)
+|+.+.-|+|||.
T Consensus 61 ~lv~~~TGsGKT~ 73 (394)
T 1fuu_A 61 VLAQAQSGTGKTG 73 (394)
T ss_dssp EEECCCSSHHHHH
T ss_pred EEEECCCCChHHH
Confidence 6899999999995
No 484
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=23.49 E-value=31 Score=29.11 Aligned_cols=15 Identities=33% Similarity=0.403 Sum_probs=13.3
Q ss_pred eEEEecccCCCccCC
Q 033696 97 ATIITGFLGSGKNTG 111 (113)
Q Consensus 97 vTIiTGfLGsGKtTL 111 (113)
.+|+.+.-|||||+.
T Consensus 188 dvlv~a~TGSGKT~~ 202 (618)
T 2whx_A 188 LTIMDLHPGAGKTKR 202 (618)
T ss_dssp EEEECCCTTSSTTTT
T ss_pred eEEEEcCCCCCHHHH
Confidence 579999999999984
No 485
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=23.44 E-value=25 Score=26.92 Aligned_cols=13 Identities=38% Similarity=0.493 Sum_probs=11.7
Q ss_pred EEEecccCCCccC
Q 033696 98 TIITGFLGSGKNT 110 (113)
Q Consensus 98 TIiTGfLGsGKtT 110 (113)
+|+.+.-|+|||-
T Consensus 25 ~l~~~~tGsGKT~ 37 (556)
T 4a2p_A 25 ALICAPTGSGKTF 37 (556)
T ss_dssp EEEECCTTSCHHH
T ss_pred EEEEcCCCChHHH
Confidence 7899999999994
No 486
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=23.02 E-value=26 Score=27.24 Aligned_cols=14 Identities=14% Similarity=0.178 Sum_probs=12.3
Q ss_pred eEEEecccCCCccC
Q 033696 97 ATIITGFLGSGKNT 110 (113)
Q Consensus 97 vTIiTGfLGsGKtT 110 (113)
-.||.|.-|+|||.
T Consensus 130 ~~ll~~~tGsGKT~ 143 (510)
T 2oca_A 130 RRILNLPTSAGRSL 143 (510)
T ss_dssp EEEEECCSTTTHHH
T ss_pred CcEEEeCCCCCHHH
Confidence 36999999999995
No 487
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=22.47 E-value=18 Score=27.86 Aligned_cols=15 Identities=20% Similarity=-0.048 Sum_probs=11.5
Q ss_pred eEEEecccCCCccCC
Q 033696 97 ATIITGFLGSGKNTG 111 (113)
Q Consensus 97 vTIiTGfLGsGKtTL 111 (113)
|.|..|-=|.||||+
T Consensus 111 Iav~s~KGGvGKTT~ 125 (398)
T 3ez2_A 111 IFISNLKGGVSKTVS 125 (398)
T ss_dssp EEECCSSSSSSHHHH
T ss_pred EEEEeCCCCccHHHH
Confidence 455557788999996
No 488
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=21.33 E-value=29 Score=28.03 Aligned_cols=13 Identities=46% Similarity=0.519 Sum_probs=12.1
Q ss_pred EEEecccCCCccC
Q 033696 98 TIITGFLGSGKNT 110 (113)
Q Consensus 98 TIiTGfLGsGKtT 110 (113)
+||.+.-|+|||.
T Consensus 31 ~iv~~~TGsGKTl 43 (696)
T 2ykg_A 31 TIICAPTGCGKTF 43 (696)
T ss_dssp EEEECCTTSSHHH
T ss_pred EEEEcCCCchHHH
Confidence 8999999999996
No 489
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=21.23 E-value=27 Score=26.32 Aligned_cols=19 Identities=26% Similarity=0.410 Sum_probs=15.5
Q ss_pred CCCceEEEeccc-CCCccCC
Q 033696 93 NRIPATIITGFL-GSGKNTG 111 (113)
Q Consensus 93 ~riPvTIiTGfL-GsGKtTL 111 (113)
++++...|||-- |+|||++
T Consensus 24 ~~m~~i~Itgt~t~vGKT~v 43 (251)
T 3fgn_A 24 SHMTILVVTGTGTGVGKTVV 43 (251)
T ss_dssp SSCEEEEEEESSTTSCHHHH
T ss_pred cCCCEEEEEeCCCCCcHHHH
Confidence 457888999975 9999985
No 490
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=20.92 E-value=31 Score=26.75 Aligned_cols=13 Identities=31% Similarity=0.417 Sum_probs=11.9
Q ss_pred EEEecccCCCccC
Q 033696 98 TIITGFLGSGKNT 110 (113)
Q Consensus 98 TIiTGfLGsGKtT 110 (113)
+|+.+.-|||||.
T Consensus 96 ~i~~a~TGsGKT~ 108 (434)
T 2db3_A 96 LMACAQTGSGKTA 108 (434)
T ss_dssp EEEECCTTSSHHH
T ss_pred EEEECCCCCCchH
Confidence 7899999999995
No 491
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=20.79 E-value=30 Score=27.19 Aligned_cols=14 Identities=29% Similarity=0.354 Sum_probs=12.3
Q ss_pred eEEEecccCCCccC
Q 033696 97 ATIITGFLGSGKNT 110 (113)
Q Consensus 97 vTIiTGfLGsGKtT 110 (113)
-+|+.+..|+|||.
T Consensus 113 ~~lv~apTGsGKTl 126 (563)
T 3i5x_A 113 DVIARAKTGTGKTF 126 (563)
T ss_dssp EEEEECCTTSCHHH
T ss_pred eEEEECCCCCCccH
Confidence 57899999999995
Done!