BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033697
(113 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q12962|TAF10_HUMAN Transcription initiation factor TFIID subunit 10 OS=Homo sapiens
GN=TAF10 PE=1 SV=1
Length = 218
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 44/58 (75%)
Query: 21 LTEFLSSLMGYTPTIPDELVEHYLAKSGFQCPDVRLIRLVAVATQKFVAEVATDALQY 78
L +FL L YTPTIPD + +YL ++GF+ D R+IRL+++A QKF++++A DALQ+
Sbjct: 116 LVDFLMQLEDYTPTIPDAVTGYYLNRAGFEASDPRIIRLISLAAQKFISDIANDALQH 173
>sp|Q9XZT7|TAFAB_DROME Transcription initiation factor TFIID subunit 10b OS=Drosophila
melanogaster GN=Taf10b PE=1 SV=1
Length = 146
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 43/59 (72%)
Query: 21 LTEFLSSLMGYTPTIPDELVEHYLAKSGFQCPDVRLIRLVAVATQKFVAEVATDALQYA 79
L++F+S L YTP IPD + HYL GFQ D R++RL+++A QK+++++ DALQ++
Sbjct: 41 LSDFMSQLEDYTPLIPDAVTSHYLNMGGFQSDDKRIVRLISLAAQKYMSDIIDDALQHS 99
>sp|Q8K0H5|TAF10_MOUSE Transcription initiation factor TFIID subunit 10 OS=Mus musculus
GN=Taf10 PE=1 SV=1
Length = 218
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 44/58 (75%)
Query: 21 LTEFLSSLMGYTPTIPDELVEHYLAKSGFQCPDVRLIRLVAVATQKFVAEVATDALQY 78
L +FL L YTPTIPD + +YL ++GF+ D R+IRL+++A QKF++++A DALQ+
Sbjct: 116 LVDFLMQLEDYTPTIPDAVTGYYLNRAGFEASDPRIIRLISLAAQKFISDIANDALQH 173
>sp|O60171|TAF10_SCHPO Transcription initiation factor TFIID subunit 10
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=taf10 PE=3 SV=1
Length = 215
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 44/62 (70%)
Query: 18 DAALTEFLSSLMGYTPTIPDELVEHYLAKSGFQCPDVRLIRLVAVATQKFVAEVATDALQ 77
D L FL+ + Y+P IPD L+++YL+ SGF+C D RL +L+ + QKF+++VA DA Q
Sbjct: 90 DKTLENFLAQMDDYSPLIPDVLLDYYLSLSGFKCVDPRLKKLLGLTAQKFISDVAQDAYQ 149
Query: 78 YA 79
Y+
Sbjct: 150 YS 151
>sp|Q12030|TAF10_YEAST Transcription initiation factor TFIID subunit 10 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TAF10 PE=1
SV=1
Length = 206
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 43/62 (69%)
Query: 18 DAALTEFLSSLMGYTPTIPDELVEHYLAKSGFQCPDVRLIRLVAVATQKFVAEVATDALQ 77
D L E L + P IPD ++++YL K+GF DVR+ RL+A+ATQKFV+++A DA +
Sbjct: 71 DKTLEEILEMMDSTPPIIPDAVIDYYLTKNGFNVADVRVKRLLALATQKFVSDIAKDAYE 130
Query: 78 YA 79
Y+
Sbjct: 131 YS 132
>sp|Q9U5W9|TAF10_DROME Transcription initiation factor TFIID subunit 10 OS=Drosophila
melanogaster GN=Taf10 PE=1 SV=2
Length = 167
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 43/62 (69%)
Query: 17 DDAALTEFLSSLMGYTPTIPDELVEHYLAKSGFQCPDVRLIRLVAVATQKFVAEVATDAL 76
+++ + E + L Y+PTIPD L H L +GF D +++RLV+V+ QKF++++A DAL
Sbjct: 53 EESEMDELIKQLEDYSPTIPDALTMHILKTAGFCTVDPKIVRLVSVSAQKFISDIANDAL 112
Query: 77 QY 78
Q+
Sbjct: 113 QH 114
>sp|Q6P4U6|ZNRF1_DANRE E3 ubiquitin-protein ligase znrf1 OS=Danio rerio GN=znrf1 PE=2 SV=1
Length = 215
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 3 HNNNFQQSSDGRHDDDAALTEFLSSLMGYTPTIPDELVEHYL-AKSGFQCP 52
HN N Q + G H D L +L S T+P + + A SGF+CP
Sbjct: 86 HNGNGYQETGGGHHTDGML--YLGSRASLADTLPLHIAPRWFSAHSGFKCP 134
>sp|Q06149|PDR8_YEAST Transcription factor PDR8 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=PDR8 PE=1 SV=1
Length = 701
Score = 29.6 bits (65), Expect = 5.8, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Query: 29 MGYTPTIPDELVE-HYLAKSGFQCP--DVRLIRLVA--VATQKFVA-EVATDALQYATNT 82
+G P+I D+L++ FQ P D R ++L+ + +F E+ + T
Sbjct: 360 IGNPPSISDDLLDLSIFTAQNFQSPSIDFRRVKLMHDFLDVSRFTTREIHKREMNEKLTT 419
Query: 83 FFLRLLLFVFTRFQGFSLFTNS 104
F LRL+ F+ + F +TNS
Sbjct: 420 FSLRLIEFIQSNFSPIEHYTNS 441
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.136 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,342,195
Number of Sequences: 539616
Number of extensions: 1208065
Number of successful extensions: 4271
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 4264
Number of HSP's gapped (non-prelim): 9
length of query: 113
length of database: 191,569,459
effective HSP length: 81
effective length of query: 32
effective length of database: 147,860,563
effective search space: 4731538016
effective search space used: 4731538016
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)