Query 033697
Match_columns 113
No_of_seqs 107 out of 135
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 08:22:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033697.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033697hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ku5_A HPHA, archaeal histon; 96.1 0.02 6.9E-07 36.3 6.4 51 31-81 3-53 (70)
2 1taf_A TFIID TBP associated fa 94.8 0.1 3.5E-06 34.1 6.4 45 38-82 5-49 (68)
3 2hue_C Histone H4; mini beta s 91.6 0.66 2.3E-05 30.5 6.3 55 28-82 4-58 (84)
4 1id3_B Histone H4; nucleosome 91.1 0.47 1.6E-05 32.6 5.4 56 27-82 21-76 (102)
5 3b0c_T CENP-T, centromere prot 90.9 0.4 1.4E-05 33.4 5.0 50 33-82 6-55 (111)
6 1tzy_D Histone H4-VI; histone- 89.4 0.95 3.2E-05 30.8 5.8 55 28-82 23-77 (103)
7 2yfw_B Histone H4, H4; cell cy 88.4 1.3 4.3E-05 30.2 5.8 53 29-81 24-76 (103)
8 1h3o_B Transcription initiatio 86.5 2.8 9.6E-05 27.8 6.5 49 18-84 8-56 (76)
9 1taf_B TFIID TBP associated fa 84.6 6.3 0.00022 25.6 7.5 51 31-81 3-53 (70)
10 1b67_A Protein (histone HMFA); 84.4 3.9 0.00013 25.2 6.1 48 34-81 2-49 (68)
11 1n1j_A NF-YB; histone-like PAI 80.1 10 0.00034 24.8 7.4 50 32-81 6-57 (93)
12 1n1j_B NF-YC; histone-like PAI 79.4 7.2 0.00025 26.0 6.4 51 32-82 17-68 (97)
13 2dae_A KIAA0733 protein; mitog 75.2 1.4 4.7E-05 30.0 1.8 24 27-50 16-39 (75)
14 1f1e_A Histone fold protein; a 74.3 9.1 0.00031 28.2 6.2 49 33-81 3-52 (154)
15 1h3o_A Transcription initiatio 73.9 3.8 0.00013 27.4 3.8 34 41-74 13-46 (75)
16 1jfi_A Transcription regulator 72.0 15 0.00052 24.5 6.5 53 30-82 7-60 (98)
17 1f1e_A Histone fold protein; a 66.2 17 0.00058 26.7 6.2 49 33-81 81-129 (154)
18 2byk_B Chrac-14; nucleosome sl 64.3 9.3 0.00032 27.0 4.3 49 33-81 8-58 (128)
19 3b0c_W CENP-W, centromere prot 62.7 20 0.00069 22.7 5.4 49 33-82 3-53 (76)
20 4g92_C HAPE; transcription fac 60.3 9.3 0.00032 26.5 3.7 65 19-83 17-91 (119)
21 2ejs_A Autocrine motility fact 59.9 11 0.00037 24.0 3.6 44 15-60 7-50 (58)
22 2ekf_A Ancient ubiquitous prot 58.3 12 0.0004 24.1 3.6 45 14-60 6-50 (61)
23 3b0b_C CENP-X, centromere prot 55.1 18 0.00063 24.0 4.3 51 29-80 3-57 (81)
24 2byk_A Chrac-16; nucleosome sl 53.1 13 0.00044 26.8 3.5 48 32-79 17-65 (140)
25 2dhy_A CUE domain-containing p 38.3 36 0.0012 21.8 3.5 51 13-64 10-60 (67)
26 4art_A Structural protein ORF2 36.7 15 0.00051 29.3 1.8 31 19-50 97-127 (279)
27 3byi_A RHO GTPase activating p 36.7 48 0.0016 23.8 4.4 40 18-59 93-132 (214)
28 4dra_E Centromere protein X; D 34.2 71 0.0024 21.4 4.6 50 31-81 9-62 (84)
29 1o6b_A Phosphopantetheine aden 33.4 37 0.0013 23.1 3.2 38 15-52 126-163 (169)
30 1jfi_B DR1 protein, transcript 33.0 1.3E+02 0.0043 22.6 6.3 48 33-81 14-63 (179)
31 1f7c_A Rhogap protein; GTPase 31.9 48 0.0017 24.2 3.8 43 18-62 98-140 (231)
32 3msx_B RHO GTPase-activating p 29.8 39 0.0013 23.9 2.9 43 18-62 81-123 (201)
33 2rrh_A VIP peptides; peptide h 29.1 45 0.0016 18.3 2.5 14 60-73 15-28 (29)
34 3fk2_A Glucocorticoid receptor 28.8 90 0.0031 23.0 4.9 41 19-61 126-166 (246)
35 2g49_C Glucagon preproprotein; 27.3 38 0.0013 18.9 2.0 15 59-73 14-28 (29)
36 3lvy_A Carboxymuconolactone de 26.7 1.6E+02 0.0053 21.3 5.7 59 15-76 134-192 (207)
37 3kuq_A RHO GTPase-activating p 26.4 41 0.0014 24.6 2.5 42 19-62 93-134 (228)
38 3fpf_A Mtnas, putative unchara 26.4 1.1E+02 0.0039 24.0 5.3 56 21-85 32-89 (298)
39 3a1y_A 50S ribosomal protein P 25.6 74 0.0025 19.5 3.3 38 37-74 19-56 (58)
40 3b0b_B CENP-S, centromere prot 25.3 1.1E+02 0.0037 21.2 4.4 34 47-81 36-69 (107)
41 1f9a_A Hypothetical protein MJ 25.1 60 0.0021 22.3 3.1 40 16-59 124-163 (168)
42 2osa_A N-chimaerin; RHO-GAP, G 24.8 39 0.0013 24.0 2.2 42 18-61 83-124 (202)
43 2ee4_A RHO GTPase activating p 24.8 49 0.0017 23.6 2.7 41 19-61 85-125 (209)
44 1uqv_A STE50 protein; SAM, ste 23.2 57 0.002 22.3 2.6 30 29-58 7-36 (85)
45 1t5q_A Gastric inhibitory poly 22.2 72 0.0025 17.8 2.5 15 59-73 14-28 (30)
46 1vlh_A Phosphopantetheine aden 22.0 1.1E+02 0.0037 21.4 4.0 32 16-47 137-168 (173)
47 2qtr_A Nicotinate (nicotinamid 21.9 1E+02 0.0035 21.0 3.8 32 15-46 153-184 (189)
48 4g3o_A E3 ubiquitin-protein li 21.3 58 0.002 20.7 2.2 39 19-59 15-53 (58)
49 2d2p_A Pituitary adenylate cyc 21.3 73 0.0025 18.7 2.5 16 59-74 14-29 (39)
50 1qjc_A Phosphopantetheine aden 21.2 62 0.0021 21.4 2.5 31 16-46 126-156 (158)
No 1
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=96.12 E-value=0.02 Score=36.31 Aligned_cols=51 Identities=18% Similarity=0.327 Sum_probs=45.6
Q ss_pred CCCCCcHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033697 31 YTPTIPDELVEHYLAKSGFQCPDVRLIRLVAVATQKFVAEVATDALQYATN 81 (113)
Q Consensus 31 Y~PtIPDaVt~yYL~~aGf~~~D~RI~RLISLAAQKFISDIa~DA~Qy~K~ 81 (113)
|.|.||-+.+.-.++++|..--.+.+.-.+.=++..|+.+|+.||..||+-
T Consensus 3 ~~~~lp~a~v~Rl~r~~g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~h 53 (70)
T 1ku5_A 3 MMGELPIAPVDRLIRKAGAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARH 53 (70)
T ss_dssp --CCSCHHHHHHHHHHTTCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccccCChHHHHHHHHHcCcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999877788899999999999999999999999874
No 2
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=94.84 E-value=0.1 Score=34.10 Aligned_cols=45 Identities=20% Similarity=0.290 Sum_probs=40.7
Q ss_pred HHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033697 38 ELVEHYLAKSGFQCPDVRLIRLVAVATQKFVAEVATDALQYATNT 82 (113)
Q Consensus 38 aVt~yYL~~aGf~~~D~RI~RLISLAAQKFISDIa~DA~Qy~K~r 82 (113)
.++.-.|+++|.+--+|+++-.+.=.+.+++++|+.||..|++-.
T Consensus 5 ~~i~~iLk~~G~~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HA 49 (68)
T 1taf_A 5 QVIMSILKELNVQEYEPRVVNQLLEFTFRYVTSILDDAKVYANHA 49 (68)
T ss_dssp HHHHHHHHHTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 467889999999999999999999999999999999999998753
No 3
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=91.58 E-value=0.66 Score=30.49 Aligned_cols=55 Identities=15% Similarity=0.192 Sum_probs=46.3
Q ss_pred cccCCCCCcHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033697 28 LMGYTPTIPDELVEHYLAKSGFQCPDVRLIRLVAVATQKFVAEVATDALQYATNT 82 (113)
Q Consensus 28 LdDY~PtIPDaVt~yYL~~aGf~~~D~RI~RLISLAAQKFISDIa~DA~Qy~K~r 82 (113)
|.|...-||-+-+.-.++++|..---..+..-+.=....|+.+|+.||..||+-.
T Consensus 4 ~r~~~~~ip~~~I~Riar~~Gv~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha 58 (84)
T 2hue_C 4 LRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHA 58 (84)
T ss_dssp GGGGCCSSCHHHHHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccccCCCCCHHHHHHHHHHcCchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4566778999999999999999744444788888889999999999999998753
No 4
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=91.07 E-value=0.47 Score=32.57 Aligned_cols=56 Identities=14% Similarity=0.217 Sum_probs=45.8
Q ss_pred hcccCCCCCcHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033697 27 SLMGYTPTIPDELVEHYLAKSGFQCPDVRLIRLVAVATQKFVAEVATDALQYATNT 82 (113)
Q Consensus 27 ~LdDY~PtIPDaVt~yYL~~aGf~~~D~RI~RLISLAAQKFISDIa~DA~Qy~K~r 82 (113)
.|.|...-||-+-+.-.++++|...--..+..-+.=+...|+.+|+.||..||+-.
T Consensus 21 ~~r~~i~~ip~~~I~Rlar~~Gv~rIS~da~~~l~~~le~fi~~I~~dA~~~a~Ha 76 (102)
T 1id3_B 21 ILRDNIQGITKPAIRRLARRGGVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHA 76 (102)
T ss_dssp ---CCGGGSCHHHHHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhccCCCCHHHHHHHHHHcCchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34566677999999999999999754455888889999999999999999998753
No 5
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=90.94 E-value=0.4 Score=33.40 Aligned_cols=50 Identities=12% Similarity=0.297 Sum_probs=41.8
Q ss_pred CCCcHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033697 33 PTIPDELVEHYLAKSGFQCPDVRLIRLVAVATQKFVAEVATDALQYATNT 82 (113)
Q Consensus 33 PtIPDaVt~yYL~~aGf~~~D~RI~RLISLAAQKFISDIa~DA~Qy~K~r 82 (113)
|-||-+.+.-.++++|..---+.+.-.+.=++..|+.+|+.||..||+-.
T Consensus 6 ~~lP~a~I~Ri~r~~g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA 55 (111)
T 3b0c_T 6 PEIASSLIKQIFSHYVKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHA 55 (111)
T ss_dssp ----CHHHHHHHHHHHCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 67999999999999998877777889999999999999999999999754
No 6
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=89.40 E-value=0.95 Score=30.75 Aligned_cols=55 Identities=15% Similarity=0.192 Sum_probs=44.1
Q ss_pred cccCCCCCcHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033697 28 LMGYTPTIPDELVEHYLAKSGFQCPDVRLIRLVAVATQKFVAEVATDALQYATNT 82 (113)
Q Consensus 28 LdDY~PtIPDaVt~yYL~~aGf~~~D~RI~RLISLAAQKFISDIa~DA~Qy~K~r 82 (113)
+.|-..-||-+-+.-++++.|+..--..+..-++=....|+.+|+.||..||+-.
T Consensus 23 ~r~~~~gip~~~I~Rlar~~G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~ha 77 (103)
T 1tzy_D 23 LRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHA 77 (103)
T ss_dssp CCCGGGGSCHHHHHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhcccCCHHHHHHHHHHcCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4444455999999999999999753345777777888999999999999998753
No 7
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=88.35 E-value=1.3 Score=30.19 Aligned_cols=53 Identities=15% Similarity=0.205 Sum_probs=40.8
Q ss_pred ccCCCCCcHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033697 29 MGYTPTIPDELVEHYLAKSGFQCPDVRLIRLVAVATQKFVAEVATDALQYATN 81 (113)
Q Consensus 29 dDY~PtIPDaVt~yYL~~aGf~~~D~RI~RLISLAAQKFISDIa~DA~Qy~K~ 81 (113)
.|-..-||-+-+.-++++.|+..--..+..-++=....|+.+|+.||..||+-
T Consensus 24 r~~~~gip~~~I~Rlar~~G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~h 76 (103)
T 2yfw_B 24 RDNIQGITKPAIRRLARRGGVKRISGLIYEEVRNVLKTFLESVIRDAVTYTEH 76 (103)
T ss_dssp ------CCHHHHHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccCCHHHHHHHHHHcCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445599999999999999975444577778888999999999999999874
No 8
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=86.54 E-value=2.8 Score=27.85 Aligned_cols=49 Identities=16% Similarity=0.159 Sum_probs=40.7
Q ss_pred chHHHHHHHhcccCCCCCcHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033697 18 DAALTEFLSSLMGYTPTIPDELVEHYLAKSGFQCPDVRLIRLVAVATQKFVAEVATDALQYATNTFF 84 (113)
Q Consensus 18 d~~L~eFL~~LdDY~PtIPDaVt~yYL~~aGf~~~D~RI~RLISLAAQKFISDIa~DA~Qy~K~r~~ 84 (113)
-..|.|++.+.+- =.+-||-+..++.=-|..||.+|++.|.+.||-|.-
T Consensus 8 k~~L~~Lv~~idp------------------~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s 56 (76)
T 1h3o_B 8 KKKLQDLVREVDP------------------NEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKS 56 (76)
T ss_dssp HHHHHHHHHHHCS------------------SCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCC------------------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4667888887752 145699999999999999999999999999998863
No 9
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=84.60 E-value=6.3 Score=25.65 Aligned_cols=51 Identities=14% Similarity=0.168 Sum_probs=45.6
Q ss_pred CCCCCcHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033697 31 YTPTIPDELVEHYLAKSGFQCPDVRLIRLVAVATQKFVAEVATDALQYATN 81 (113)
Q Consensus 31 Y~PtIPDaVt~yYL~~aGf~~~D~RI~RLISLAAQKFISDIa~DA~Qy~K~ 81 (113)
|...+|-+-+.-+.++.|.+.-..-+.+.++=-..--+.+|+++|..+.|-
T Consensus 3 ~~s~lp~~~v~~iaes~Gi~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrH 53 (70)
T 1taf_B 3 YGSSISAESMKVIAESIGVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNH 53 (70)
T ss_dssp CSCCCCHHHHHHHHHHTTCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999998888888999999999999999999887664
No 10
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=84.38 E-value=3.9 Score=25.19 Aligned_cols=48 Identities=15% Similarity=0.196 Sum_probs=36.2
Q ss_pred CCcHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033697 34 TIPDELVEHYLAKSGFQCPDVRLIRLVAVATQKFVAEVATDALQYATN 81 (113)
Q Consensus 34 tIPDaVt~yYL~~aGf~~~D~RI~RLISLAAQKFISDIa~DA~Qy~K~ 81 (113)
.||-+-+.-.+++.|-..--..-.-+++=|+.-|+..|+.||..+|+-
T Consensus 2 ~lP~a~v~Ri~k~~~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~ 49 (68)
T 1b67_A 2 ELPIAPIGRIIKNAGAERVSDDARIALAKVLEEMGEEIASEAVKLAKH 49 (68)
T ss_dssp CSCHHHHHHHHHHTTCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHhcCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888888888883222223345578889999999999999999874
No 11
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=80.08 E-value=10 Score=24.80 Aligned_cols=50 Identities=12% Similarity=0.074 Sum_probs=39.6
Q ss_pred CCCCcHHHHHHHHHhCCCCC--CChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033697 32 TPTIPDELVEHYLAKSGFQC--PDVRLIRLVAVATQKFVAEVATDALQYATN 81 (113)
Q Consensus 32 ~PtIPDaVt~yYL~~aGf~~--~D~RI~RLISLAAQKFISDIa~DA~Qy~K~ 81 (113)
-..+|-+-+.-.++++|=+. --.--.-+++-|+.-||..++.+|..+|+-
T Consensus 6 d~~LP~a~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~ 57 (93)
T 1n1j_A 6 DIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQ 57 (93)
T ss_dssp -CCCCHHHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCChhHHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999997432 123345688999999999999999999874
No 12
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=79.44 E-value=7.2 Score=25.97 Aligned_cols=51 Identities=16% Similarity=0.120 Sum_probs=39.2
Q ss_pred CCCCcHHHHHHHHHhCCCC-CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033697 32 TPTIPDELVEHYLAKSGFQ-CPDVRLIRLVAVATQKFVAEVATDALQYATNT 82 (113)
Q Consensus 32 ~PtIPDaVt~yYL~~aGf~-~~D~RI~RLISLAAQKFISDIa~DA~Qy~K~r 82 (113)
.+.+|=+-+.-+|+..+-- ---.-..-+++-|++-|+.+++..|+.+|+..
T Consensus 17 ~~~lP~arIkrImK~~~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~ 68 (97)
T 1n1j_B 17 VQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDN 68 (97)
T ss_dssp ---CCHHHHHHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCcCCHHHHHHHHccCccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5679999999999998652 12334556899999999999999999998753
No 13
>2dae_A KIAA0733 protein; mitogen-activated protein kinase kinase kinase 7 interacting protein 2, MAP3K7IP2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.20 E-value=1.4 Score=30.02 Aligned_cols=24 Identities=17% Similarity=0.335 Sum_probs=19.4
Q ss_pred hcccCCCCCcHHHHHHHHHhCCCC
Q 033697 27 SLMGYTPTIPDELVEHYLAKSGFQ 50 (113)
Q Consensus 27 ~LdDY~PtIPDaVt~yYL~~aGf~ 50 (113)
.|..==|+|||.|+..++.++|-+
T Consensus 16 eLkQrFPEvPd~VVsqc~~qN~~N 39 (75)
T 2dae_A 16 DLRQKFPEVPEVVVSRCMLQNNNN 39 (75)
T ss_dssp HHHHHSSSSCHHHHHHHHTTTTSC
T ss_pred HHHHhcccCcHHHHHHHHHHhccC
Confidence 344446999999999999998865
No 14
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=74.28 E-value=9.1 Score=28.19 Aligned_cols=49 Identities=12% Similarity=0.068 Sum_probs=40.6
Q ss_pred CCCcHHHHHHHHHhC-CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033697 33 PTIPDELVEHYLAKS-GFQCPDVRLIRLVAVATQKFVAEVATDALQYATN 81 (113)
Q Consensus 33 PtIPDaVt~yYL~~a-Gf~~~D~RI~RLISLAAQKFISDIa~DA~Qy~K~ 81 (113)
+-+|-+.+.-.++++ |-.---.-.+-.++=+.+.|+..|+.+|-.+|+-
T Consensus 3 ~~LP~a~V~Riik~~lg~~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~h 52 (154)
T 1f1e_A 3 VELPKAAIERIFRQGIGERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDA 52 (154)
T ss_dssp -CCCHHHHHHHHHTTSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCCccHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568999999999999 8754444556678889999999999999999874
No 15
>1h3o_A Transcription initiation factor TFIID 135 kDa subunit; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=73.92 E-value=3.8 Score=27.36 Aligned_cols=34 Identities=18% Similarity=0.135 Sum_probs=28.5
Q ss_pred HHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 033697 41 EHYLAKSGFQCPDVRLIRLVAVATQKFVAEVATD 74 (113)
Q Consensus 41 ~yYL~~aGf~~~D~RI~RLISLAAQKFISDIa~D 74 (113)
....++.|.....+.|.++||+|+|-=+-.+...
T Consensus 13 ~~I~~k~gl~~~~~dv~~~iS~a~qeRLr~llek 46 (75)
T 1h3o_A 13 LEIGKKHGITELHPDVVSYVSHATQQRLQNLVEK 46 (75)
T ss_dssp HHHHHTTTCCEECTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCcCChhHHHHhHHHHHHHHHHHHHH
Confidence 3567899999999999999999999877666654
No 16
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=72.04 E-value=15 Score=24.51 Aligned_cols=53 Identities=11% Similarity=0.161 Sum_probs=39.2
Q ss_pred cCCCCCcHHHHHHHHHhCCCC-CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033697 30 GYTPTIPDELVEHYLAKSGFQ-CPDVRLIRLVAVATQKFVAEVATDALQYATNT 82 (113)
Q Consensus 30 DY~PtIPDaVt~yYL~~aGf~-~~D~RI~RLISLAAQKFISDIa~DA~Qy~K~r 82 (113)
.+.+.+|=+-+.-+|+..+-- ---.--.-+++-|++-|+.+++..|+.+++..
T Consensus 7 k~~~~fPvaRIkrimK~~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~ 60 (98)
T 1jfi_A 7 KYNARFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSR 60 (98)
T ss_dssp ---CCCCHHHHHHHHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred ccCCCCChHHHHHHHHcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 456788999999999976652 12223445899999999999999999998743
No 17
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=66.25 E-value=17 Score=26.72 Aligned_cols=49 Identities=16% Similarity=0.224 Sum_probs=39.4
Q ss_pred CCCcHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033697 33 PTIPDELVEHYLAKSGFQCPDVRLIRLVAVATQKFVAEVATDALQYATN 81 (113)
Q Consensus 33 PtIPDaVt~yYL~~aGf~~~D~RI~RLISLAAQKFISDIa~DA~Qy~K~ 81 (113)
..||-+.+.-+++++|-.---.-.+-.+.=+.+.|++.|+.+|-.+|+-
T Consensus 81 l~lP~a~V~Ri~k~~g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~h 129 (154)
T 1f1e_A 81 ELFGRATVRRILKRAGIERASSDAVDLYNKLICRATEELGEKAAEYADE 129 (154)
T ss_dssp CCCCHHHHHHHHHHTTCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCccHHHHHHHHcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3799999999999998764333445566777889999999999999874
No 18
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=64.29 E-value=9.3 Score=26.99 Aligned_cols=49 Identities=12% Similarity=0.150 Sum_probs=35.8
Q ss_pred CCCcHHHHHHHHHhCCCC--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033697 33 PTIPDELVEHYLAKSGFQ--CPDVRLIRLVAVATQKFVAEVATDALQYATN 81 (113)
Q Consensus 33 PtIPDaVt~yYL~~aGf~--~~D~RI~RLISLAAQKFISDIa~DA~Qy~K~ 81 (113)
..+|=+.+.-.++.++=+ .--.--.-+++-|+.-||..|+..|.++|+.
T Consensus 8 ~~LP~A~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~ 58 (128)
T 2byk_B 8 LNLPNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHK 58 (128)
T ss_dssp ---CCSHHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888888888876521 1223345689999999999999999999876
No 19
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=62.70 E-value=20 Score=22.67 Aligned_cols=49 Identities=18% Similarity=0.209 Sum_probs=37.1
Q ss_pred CCCcHHHHHHHHHhC-C-CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033697 33 PTIPDELVEHYLAKS-G-FQCPDVRLIRLVAVATQKFVAEVATDALQYATNT 82 (113)
Q Consensus 33 PtIPDaVt~yYL~~a-G-f~~~D~RI~RLISLAAQKFISDIa~DA~Qy~K~r 82 (113)
+.+|=+-+.-.|+++ + ...+ ..-.-+++.++.-||..|+..|.+.|+-.
T Consensus 3 ~~LP~A~V~rI~K~~~p~~~is-~~A~~~i~~~~~~Fi~~la~eA~~~a~~~ 53 (76)
T 3b0c_W 3 RTVPRGTLRKIIKKHKPHLRLA-ANTDLLVHLSFLLFLHRLAEEARTNAFEN 53 (76)
T ss_dssp -CCCHHHHHHHHHHHCTTCEEC-TTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccccHHHHHHHHhCCCCccC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 568889999999854 4 1122 23566899999999999999999998753
No 20
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=60.28 E-value=9.3 Score=26.48 Aligned_cols=65 Identities=15% Similarity=0.157 Sum_probs=46.7
Q ss_pred hHHHHHHHhc--------ccC-CCCCcHHHHHHHHHhCCCC-CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033697 19 AALTEFLSSL--------MGY-TPTIPDELVEHYLAKSGFQ-CPDVRLIRLVAVATQKFVAEVATDALQYATNTF 83 (113)
Q Consensus 19 ~~L~eFL~~L--------dDY-~PtIPDaVt~yYL~~aGf~-~~D~RI~RLISLAAQKFISDIa~DA~Qy~K~r~ 83 (113)
..|.+|+..- .|+ .|-+|=+-+.-+|+...-. .--.--.=+++-|+.-||++++..|..+|+...
T Consensus 17 ~~l~~fw~~~~~~~e~~~~d~k~~~lPvaRIkrImK~d~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~k 91 (119)
T 4g92_C 17 DILTTYWQHVINHLESDNHDYKIHQLPLARIKKVMKADPEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNK 91 (119)
T ss_dssp HHHHHHHHHHHHHHTCSCCCSSCCSSCHHHHHHHHHTSTTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcccccccCCCCHHHHHHHHhhCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6788886543 134 5669999999999753111 011233558999999999999999999998653
No 21
>2ejs_A Autocrine motility factor receptor, isoform 2; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.92 E-value=11 Score=24.03 Aligned_cols=44 Identities=14% Similarity=0.231 Sum_probs=36.3
Q ss_pred CCCchHHHHHHHhcccCCCCCcHHHHHHHHHhCCCCCCChHHHHHH
Q 033697 15 HDDDAALTEFLSSLMGYTPTIPDELVEHYLAKSGFQCPDVRLIRLV 60 (113)
Q Consensus 15 ~~~d~~L~eFL~~LdDY~PtIPDaVt~yYL~~aGf~~~D~RI~RLI 60 (113)
+..+..+..-.+++.+--|-||.+++.+=|++.| +-+.-+-|++
T Consensus 7 ~~~~~q~~~mv~~V~~mfP~vp~~~I~~DL~~Tg--sVe~TienIL 50 (58)
T 2ejs_A 7 GASNSQLNAMAHQIQEMFPQVPYHLVLQDLQLTR--SVEITTDNIL 50 (58)
T ss_dssp SCCCCHHHHHHHHHHHHCCSSCHHHHHHHHHHHC--SHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHcCCCCHHHHHHHHHHhC--CHHHHHHHHH
Confidence 3456788888889999999999999999999999 6666666654
No 22
>2ekf_A Ancient ubiquitous protein 1; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=58.26 E-value=12 Score=24.15 Aligned_cols=45 Identities=24% Similarity=0.482 Sum_probs=36.1
Q ss_pred CCCCchHHHHHHHhcccCCCCCcHHHHHHHHHhCCCCCCChHHHHHH
Q 033697 14 RHDDDAALTEFLSSLMGYTPTIPDELVEHYLAKSGFQCPDVRLIRLV 60 (113)
Q Consensus 14 ~~~~d~~L~eFL~~LdDY~PtIPDaVt~yYL~~aGf~~~D~RI~RLI 60 (113)
.+..+.++..-.+++.+--|-||.+++.+=|++.| +-+.-+-|++
T Consensus 6 ~~~~~~ql~~mv~~V~~mfP~vp~~~I~~DL~~Tg--sVe~TienIL 50 (61)
T 2ekf_A 6 SGSPDVQLATLAQRVKEVLPHVPLGVIQRDLAKTG--CVDLTITNLL 50 (61)
T ss_dssp SCCCCCCHHHHHHHHHHHCSSSCHHHHHHHHHTSC--CHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhC--CHHHHHHHHH
Confidence 34456778888888899999999999999999999 6566555554
No 23
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=55.08 E-value=18 Score=24.01 Aligned_cols=51 Identities=27% Similarity=0.240 Sum_probs=34.2
Q ss_pred ccCCCCCcHHHHHHHHHhCCCCCCChHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q 033697 29 MGYTPTIPDELVEHYLAKSGFQCPDVRL----IRLVAVATQKFVAEVATDALQYAT 80 (113)
Q Consensus 29 dDY~PtIPDaVt~yYL~~aGf~~~D~RI----~RLISLAAQKFISDIa~DA~Qy~K 80 (113)
|+..|+||.+++.-.|+. .|+-...|| .+|++==-.-||.+.+.-|.+-++
T Consensus 3 ~~~~~~~~~~lI~ril~~-~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~ 57 (81)
T 3b0b_C 3 EEREGGFRKETVERLLRL-HFRDGRTRVNGDALLLMAELLKVFVREAAARAARQAQ 57 (81)
T ss_dssp ----CCCCHHHHHHHHHH-HCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccCCCCCHHHHHHHHHH-HhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677999999999999999 898665554 445555555667776666666554
No 24
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=53.11 E-value=13 Score=26.79 Aligned_cols=48 Identities=19% Similarity=0.120 Sum_probs=26.6
Q ss_pred CCCCcHHHHHHHHHhCCCC-CCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033697 32 TPTIPDELVEHYLAKSGFQ-CPDVRLIRLVAVATQKFVAEVATDALQYA 79 (113)
Q Consensus 32 ~PtIPDaVt~yYL~~aGf~-~~D~RI~RLISLAAQKFISDIa~DA~Qy~ 79 (113)
.+.+|=+-+.-+|+...-- .--.-..-+++-|+.-||..++..|+.+|
T Consensus 17 ~~~LPlaRIKrIMK~dpdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a 65 (140)
T 2byk_A 17 ETFLPLSRVRTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEE 65 (140)
T ss_dssp ------------CCSSSSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666654111 12344567899999999999999999999
No 25
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.33 E-value=36 Score=21.83 Aligned_cols=51 Identities=12% Similarity=0.193 Sum_probs=38.9
Q ss_pred CCCCCchHHHHHHHhcccCCCCCcHHHHHHHHHhCCCCCCChHHHHHHHHHH
Q 033697 13 GRHDDDAALTEFLSSLMGYTPTIPDELVEHYLAKSGFQCPDVRLIRLVAVAT 64 (113)
Q Consensus 13 ~~~~~d~~L~eFL~~LdDY~PtIPDaVt~yYL~~aGf~~~D~RI~RLISLAA 64 (113)
.+.....+..+-+..|.+-=|.|-.+|+++-|.++|=+ -|.-|..|+.+..
T Consensus 10 ~~~~~~~~~~~~v~~L~~MFP~lD~~vI~~vL~a~~G~-vd~aId~LL~ms~ 60 (67)
T 2dhy_A 10 ARQVRRLEFNQAMDDFKTMFPNMDYDIIECVLRANSGA-VDATIDQLLQMNL 60 (67)
T ss_dssp CCCCCCCCSHHHHHHHHHHCSSSCHHHHHHHHHHHTSC-HHHHHHHHHHHHH
T ss_pred chhccCCCHHHHHHHHHHHCCCCCHHHHHHHHHHcCCC-HHHHHHHHHhcCC
Confidence 34444566667777777778999999999999998854 3777888887764
No 26
>4art_A Structural protein ORF273; viral protein, archaeal virus, extremophiles, bicaudavirus, hyper-thermostability; HET: SO4; 2.15A {Acidianus two-tailed virus} PDB: 4ats_A
Probab=36.72 E-value=15 Score=29.29 Aligned_cols=31 Identities=35% Similarity=0.635 Sum_probs=25.4
Q ss_pred hHHHHHHHhcccCCCCCcHHHHHHHHHhCCCC
Q 033697 19 AALTEFLSSLMGYTPTIPDELVEHYLAKSGFQ 50 (113)
Q Consensus 19 ~~L~eFL~~LdDY~PtIPDaVt~yYL~~aGf~ 50 (113)
..+.|||-.++-=-|.|.| +..+||.++||.
T Consensus 97 rdfdeflfdidyglpsisd-ilkfylekagfr 127 (279)
T 4art_A 97 RDFDEFLFDIDYGLPSISD-ILKFYLEKAGFR 127 (279)
T ss_dssp SCHHHHHHHHHHCCCCHHH-HHHHHHHHTTCE
T ss_pred cchhhhheecccCCccHHH-HHHHHHHhccce
Confidence 4678999877666788877 568999999997
No 27
>3byi_A RHO GTPase activating protein 15; BM046, arhgap15, structural genomics consortium, signaling protein; 2.25A {Homo sapiens}
Probab=36.65 E-value=48 Score=23.77 Aligned_cols=40 Identities=23% Similarity=0.350 Sum_probs=29.2
Q ss_pred chHHHHHHHhcccCCCCCcHHHHHHHHHhCCCCCCChHHHHH
Q 033697 18 DAALTEFLSSLMGYTPTIPDELVEHYLAKSGFQCPDVRLIRL 59 (113)
Q Consensus 18 d~~L~eFL~~LdDY~PtIPDaVt~yYL~~aGf~~~D~RI~RL 59 (113)
..-|..|+..|- .|+||.++.+.+++-+..+..+.|+..+
T Consensus 93 a~lLK~flreLP--ePLl~~~l~~~~~~~~~~~~~~~~~~~l 132 (214)
T 3byi_A 93 TGALKMFFRELP--EPLFPYSFFEQFVEAIKKQDNNTRIEAV 132 (214)
T ss_dssp HHHHHHHHHHSS--SCSSCHHHHHHHHHHHTSSSHHHHHHHH
T ss_pred HHHHHHHHHhCC--CCCCCHHHHHHHHHHHhcCCHHHHHHHH
Confidence 345677888887 4999999999999877655445555444
No 28
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=34.24 E-value=71 Score=21.40 Aligned_cols=50 Identities=22% Similarity=0.292 Sum_probs=35.5
Q ss_pred CCCCCcHHHHHHHHHhCCCCCCChHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 033697 31 YTPTIPDELVEHYLAKSGFQCPDVRL----IRLVAVATQKFVAEVATDALQYATN 81 (113)
Q Consensus 31 Y~PtIPDaVt~yYL~~aGf~~~D~RI----~RLISLAAQKFISDIa~DA~Qy~K~ 81 (113)
-.|+||.+.+.-.|+ ..|+.+..|| ..|++==..-||.+.+.-|.+.++.
T Consensus 9 ~~~~i~~~li~ril~-~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~ 62 (84)
T 4dra_E 9 AGSGFRKELVSRLLH-LHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQA 62 (84)
T ss_dssp --CCCCHHHHHHHHH-TTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHH-HHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 479999999999999 8998665554 4455555556777777777776653
No 29
>1o6b_A Phosphopantetheine adenylyltransferase; structural genomics; HET: ADP; 2.20A {Bacillus subtilis} SCOP: c.26.1.3
Probab=33.35 E-value=37 Score=23.11 Aligned_cols=38 Identities=11% Similarity=-0.064 Sum_probs=30.2
Q ss_pred CCCchHHHHHHHhcccCCCCCcHHHHHHHHHhCCCCCC
Q 033697 15 HDDDAALTEFLSSLMGYTPTIPDELVEHYLAKSGFQCP 52 (113)
Q Consensus 15 ~~~d~~L~eFL~~LdDY~PtIPDaVt~yYL~~aGf~~~ 52 (113)
.-+...+++.+..=++....+|++|.+|+.++..+..+
T Consensus 126 ~ISST~IR~~l~~G~~~~~~vP~~V~~yi~~~~ly~~~ 163 (169)
T 1o6b_A 126 FLSSSIVKEVARYDGSVSEFVPPEVELALQQKFRQGGS 163 (169)
T ss_dssp TCCHHHHHHHHHTTCCCTTTSCHHHHHHHHHHHHSCSC
T ss_pred cCcHHHHHHHHHcCCChhHHCCHHHHHHHHHhhCcCCC
Confidence 35578899998877788889999999998887666543
No 30
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=33.02 E-value=1.3e+02 Score=22.65 Aligned_cols=48 Identities=15% Similarity=0.219 Sum_probs=38.2
Q ss_pred CCCcHHHHHHHHHhCCC--CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033697 33 PTIPDELVEHYLAKSGF--QCPDVRLIRLVAVATQKFVAEVATDALQYATN 81 (113)
Q Consensus 33 PtIPDaVt~yYL~~aGf--~~~D~RI~RLISLAAQKFISDIa~DA~Qy~K~ 81 (113)
..+|-+.+.-.++.+|= ..+ .--+-++.=++.-||+-|+..|...|+-
T Consensus 14 ~~LP~A~V~RImK~alp~~rIS-kDA~~al~ec~~eFI~~LtseA~e~a~~ 63 (179)
T 1jfi_B 14 LTIPRAAINKMIKETLPNVRVA-NDARELVVNCCTEFIHLISSEANEICNK 63 (179)
T ss_dssp CCCCHHHHHHHHHHHSTTCCBC-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcCHHHHHHHHHHhCCccccC-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36999999999999972 222 2345578889999999999999999864
No 31
>1f7c_A Rhogap protein; GTPase activating protein, RHO GTPase regulator, BH domain, signaling protein; 2.40A {Gallus gallus} SCOP: a.116.1.1
Probab=31.90 E-value=48 Score=24.25 Aligned_cols=43 Identities=14% Similarity=0.318 Sum_probs=31.5
Q ss_pred chHHHHHHHhcccCCCCCcHHHHHHHHHhCCCCCCChHHHHHHHH
Q 033697 18 DAALTEFLSSLMGYTPTIPDELVEHYLAKSGFQCPDVRLIRLVAV 62 (113)
Q Consensus 18 d~~L~eFL~~LdDY~PtIPDaVt~yYL~~aGf~~~D~RI~RLISL 62 (113)
..-|..|+..|- .|+||.++-+-+++-+.-...+.|+..+-.+
T Consensus 98 a~lLK~flReLP--ePLl~~~ly~~~~~~~~~~~~~~r~~~l~~l 140 (231)
T 1f7c_A 98 TSALKTYLRMLP--GPLMMYQFQRSFIKAAKLENQESRVSEIHSL 140 (231)
T ss_dssp HHHHHHHHHTSS--SCTTCHHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC--CCCCCHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 345677888886 4999999999999887766556666555444
No 32
>3msx_B RHO GTPase-activating protein 20; protein-proten complex, transition state, protein BI; HET: GDP; 1.65A {Homo sapiens}
Probab=29.79 E-value=39 Score=23.85 Aligned_cols=43 Identities=12% Similarity=0.291 Sum_probs=31.0
Q ss_pred chHHHHHHHhcccCCCCCcHHHHHHHHHhCCCCCCChHHHHHHHH
Q 033697 18 DAALTEFLSSLMGYTPTIPDELVEHYLAKSGFQCPDVRLIRLVAV 62 (113)
Q Consensus 18 d~~L~eFL~~LdDY~PtIPDaVt~yYL~~aGf~~~D~RI~RLISL 62 (113)
..-|..|+..|- .|+||.++.+.+++-+.-...+.|+..+-.+
T Consensus 81 a~lLK~flreLp--~pLl~~~l~~~~~~~~~~~~~~~~~~~~~~l 123 (201)
T 3msx_B 81 ASVLKDFLRNIP--GSIFSSDLYDHWVSVMDQGNDEEKINTVQRL 123 (201)
T ss_dssp HHHHHHHHHTST--TTTTTGGGHHHHHHGGGSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC--CCCCCHHHHHHHHHHHccccHHHHHHHHHHH
Confidence 345667888776 4999999999999987766656666554433
No 33
>2rrh_A VIP peptides; peptide hormone, hormone; NMR {Homo sapiens} PDB: 2rri_A
Probab=29.09 E-value=45 Score=18.33 Aligned_cols=14 Identities=14% Similarity=0.382 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHH
Q 033697 60 VAVATQKFVAEVAT 73 (113)
Q Consensus 60 ISLAAQKFISDIa~ 73 (113)
=.+||||||..+.+
T Consensus 15 ~~~~ak~fl~~l~~ 28 (29)
T 2rrh_A 15 KQMAVKKYLNSILN 28 (29)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 35789999988764
No 34
>3fk2_A Glucocorticoid receptor DNA-binding factor 1; structural genomics consortium, GTPase-activating protein, SGC, alternative splicing, anti-oncogene; 2.80A {Homo sapiens}
Probab=28.76 E-value=90 Score=23.05 Aligned_cols=41 Identities=20% Similarity=0.312 Sum_probs=30.6
Q ss_pred hHHHHHHHhcccCCCCCcHHHHHHHHHhCCCCCCChHHHHHHH
Q 033697 19 AALTEFLSSLMGYTPTIPDELVEHYLAKSGFQCPDVRLIRLVA 61 (113)
Q Consensus 19 ~~L~eFL~~LdDY~PtIPDaVt~yYL~~aGf~~~D~RI~RLIS 61 (113)
.-|..|+..|- .|+||.++-+-+++....+..+.++..+-.
T Consensus 126 ~lLK~fLReLP--ePLl~~~l~~~~~~~~~~~~~~~~~~~l~~ 166 (246)
T 3fk2_A 126 GAMKSFFSELP--DPLVPYNMQIDLVEAHKINDREQKLHALKE 166 (246)
T ss_dssp HHHHHHHHHSS--SCSSCHHHHHHHHHHTTCCSHHHHHHHHHH
T ss_pred HHHHHHHHhCC--CccCCHHHHHHHHHHhccCCHHHHHHHHHH
Confidence 45677888776 599999999999998877666666655443
No 35
>2g49_C Glucagon preproprotein; protein-peptide complex, hydrolase; 2.50A {Homo sapiens} PDB: 1kx6_A 1gcn_A 1bh0_A 1nau_A
Probab=27.30 E-value=38 Score=18.90 Aligned_cols=15 Identities=27% Similarity=0.244 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHH
Q 033697 59 LVAVATQKFVAEVAT 73 (113)
Q Consensus 59 LISLAAQKFISDIa~ 73 (113)
|=.+||||||.-+.+
T Consensus 14 l~~~aak~fv~wL~~ 28 (29)
T 2g49_C 14 LDSRRAQDFVQWLMN 28 (29)
T ss_pred HHHHHHHHHHHHHhc
Confidence 457899999987754
No 36
>3lvy_A Carboxymuconolactone decarboxylase family; alpha-structure, structural genomics, PSI-2, protein structure initiative; 2.10A {Streptococcus mutans}
Probab=26.67 E-value=1.6e+02 Score=21.28 Aligned_cols=59 Identities=12% Similarity=0.183 Sum_probs=41.8
Q ss_pred CCCchHHHHHHHhcccCCCCCcHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 033697 15 HDDDAALTEFLSSLMGYTPTIPDELVEHYLAKSGFQCPDVRLIRLVAVATQKFVAEVATDAL 76 (113)
Q Consensus 15 ~~~d~~L~eFL~~LdDY~PtIPDaVt~yYL~~aGf~~~D~RI~RLISLAAQKFISDIa~DA~ 76 (113)
..++..+-+|-..|-.=+..|||+..+- |..+||. |..|.-|+.+++..=++--.+.++
T Consensus 134 ~~~erA~l~~a~~lt~~~~~v~d~~~~~-l~~agfs--d~eivel~~~ia~~~~~n~~n~~~ 192 (207)
T 3lvy_A 134 DPKLDTLAKFTIAVINTKGRVGDEAFAD-FLEVGYT--PENALDVVLGVSLASLCNYANNMA 192 (207)
T ss_dssp CHHHHHHHHHHHHHHHTTTCCCHHHHHH-HHHTTCC--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCCCCHHHHHH-HHHcCCC--HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445666677777766334699999886 4567884 889999999988776665555444
No 37
>3kuq_A RHO GTPase-activating protein 7; structural genomics consortium, GTPase activation, SGC, alternative splicing, cytoplasm, phosphoprotein; 2.30A {Homo sapiens}
Probab=26.39 E-value=41 Score=24.61 Aligned_cols=42 Identities=24% Similarity=0.391 Sum_probs=31.1
Q ss_pred hHHHHHHHhcccCCCCCcHHHHHHHHHhCCCCCCChHHHHHHHH
Q 033697 19 AALTEFLSSLMGYTPTIPDELVEHYLAKSGFQCPDVRLIRLVAV 62 (113)
Q Consensus 19 ~~L~eFL~~LdDY~PtIPDaVt~yYL~~aGf~~~D~RI~RLISL 62 (113)
.-|..|+..|- .|+||.++.+-+++-+.....|.|+..+-.+
T Consensus 93 ~lLK~fLReLP--ePLl~~~l~~~~~~~~~~~~~~~~~~~l~~l 134 (228)
T 3kuq_A 93 DMLKQYFRDLP--EPLMTNKLSETFLQIYQYVPKDQRLQAIKAA 134 (228)
T ss_dssp HHHHHHHHHSS--SCTTCSSHHHHHHHHHHHSCGGGHHHHHHHH
T ss_pred HHHHHHHHhCC--CCCCCHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 45667887776 4999999999998877766677776655443
No 38
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Probab=26.35 E-value=1.1e+02 Score=23.98 Aligned_cols=56 Identities=14% Similarity=0.130 Sum_probs=42.6
Q ss_pred HHHHHHhcccCCC--CCcHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033697 21 LTEFLSSLMGYTP--TIPDELVEHYLAKSGFQCPDVRLIRLVAVATQKFVAEVATDALQYATNTFFL 85 (113)
Q Consensus 21 L~eFL~~LdDY~P--tIPDaVt~yYL~~aGf~~~D~RI~RLISLAAQKFISDIa~DA~Qy~K~r~~~ 85 (113)
|=.-|..|+.-.+ +|.+.++++.|+ ||++..|+....+ +.+.+.+.|++...++++
T Consensus 32 ~~~~~~~l~~~~~~~~v~~~~~~~vl~-------~~~~~~l~~~~~~--~y~~~~~~~E~~wa~~l~ 89 (298)
T 3fpf_A 32 VMPLLDEIEEIAHDSTIDFESAKHILD-------DAEMNHALSLIRK--FYVNLGMKLEMEKAQEVI 89 (298)
T ss_dssp THHHHHHHHHHHTCTTSCHHHHHHHHH-------CGGGHHHHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCcCHHHHHHHhc-------ChhHHHHHHHHHH--HHHHHHHHHHHHHHHHHh
Confidence 3334446666666 899999999876 7899998887765 478889999998888773
No 39
>3a1y_A 50S ribosomal protein P1 (L12P); stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii}
Probab=25.60 E-value=74 Score=19.52 Aligned_cols=38 Identities=24% Similarity=0.295 Sum_probs=31.1
Q ss_pred HHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 033697 37 DELVEHYLAKSGFQCPDVRLIRLVAVATQKFVAEVATD 74 (113)
Q Consensus 37 DaVt~yYL~~aGf~~~D~RI~RLISLAAQKFISDIa~D 74 (113)
.+=+.-.|+.+|.+.++-|+..+++--.-|=|.|+...
T Consensus 19 ~~~I~~il~aaGveve~~~~~~~~~~L~gk~i~elI~~ 56 (58)
T 3a1y_A 19 EENLKAVLQAAGVEPEEARIKALVAALEGVNIDEVIEK 56 (58)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHCCCCHHHHHHc
Confidence 55567789999999999999999987777777777654
No 40
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=25.29 E-value=1.1e+02 Score=21.18 Aligned_cols=34 Identities=15% Similarity=0.175 Sum_probs=24.9
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033697 47 SGFQCPDVRLIRLVAVATQKFVAEVATDALQYATN 81 (113)
Q Consensus 47 aGf~~~D~RI~RLISLAAQKFISDIa~DA~Qy~K~ 81 (113)
.|... -|+++.-++=.+.+|+.+|+.||..|++-
T Consensus 36 ~~~~v-s~~~i~aL~E~~~~~~~~ia~Da~~fA~H 69 (107)
T 3b0b_B 36 KGVLF-SKQTVAAISEITFRQCENFARDLEMFARH 69 (107)
T ss_dssp HTCEE-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34443 45566666667788999999999999874
No 41
>1f9a_A Hypothetical protein MJ0541; alpha/beta, transferase, structural genomics; HET: ATP; 2.00A {Methanocaldococcus jannaschii} SCOP: c.26.1.3
Probab=25.12 E-value=60 Score=22.27 Aligned_cols=40 Identities=15% Similarity=0.177 Sum_probs=29.6
Q ss_pred CCchHHHHHHHhcccCCCCCcHHHHHHHHHhCCCCCCChHHHHH
Q 033697 16 DDDAALTEFLSSLMGYTPTIPDELVEHYLAKSGFQCPDVRLIRL 59 (113)
Q Consensus 16 ~~d~~L~eFL~~LdDY~PtIPDaVt~yYL~~aGf~~~D~RI~RL 59 (113)
-+...+++.+..=++....+|++|.+|..+..+ .+|+.+|
T Consensus 124 ISST~IR~~~~~g~~i~~lvP~~V~~yI~~~~l----~~~~~~l 163 (168)
T 1f9a_A 124 YSGTEIRRRMLNGEKWEHLVPKAVVDVIKEIKG----VERLRKL 163 (168)
T ss_dssp SSHHHHHHHHHHTCCCGGGSCHHHHHHHHHHTH----HHHHHHH
T ss_pred ccHHHHHHHHHcCCChhHcCCHHHHHHHHHcCC----hHHHHHH
Confidence 567788888876667888999999998877644 4555554
No 42
>2osa_A N-chimaerin; RHO-GAP, GTPase activation, structural genomics, structural genomics consortium, SGC, signaling protein; 1.80A {Homo sapiens}
Probab=24.82 E-value=39 Score=24.03 Aligned_cols=42 Identities=21% Similarity=0.323 Sum_probs=29.6
Q ss_pred chHHHHHHHhcccCCCCCcHHHHHHHHHhCCCCCCChHHHHHHH
Q 033697 18 DAALTEFLSSLMGYTPTIPDELVEHYLAKSGFQCPDVRLIRLVA 61 (113)
Q Consensus 18 d~~L~eFL~~LdDY~PtIPDaVt~yYL~~aGf~~~D~RI~RLIS 61 (113)
..-|..|+..|- .|+||.++-+-+++-+.....+.|+..+-.
T Consensus 83 a~lLK~flreLp--ePLl~~~~~~~~~~~~~~~~~~~~~~~l~~ 124 (202)
T 2osa_A 83 TGALKLYFRDLP--IPLITYDAYPKFIESAKIMDPDEQLETLHE 124 (202)
T ss_dssp HHHHHHHHHTCS--SCSSCTTTHHHHHHHHHCCSHHHHHHHHHH
T ss_pred HHHHHHHHHhCC--CccCCHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 345677888776 599999999888887766555556554433
No 43
>2ee4_A RHO GTPase activating protein 5 variant; all alpha protein, GTPase-activating protein for RHO family members, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2ee5_A
Probab=24.82 E-value=49 Score=23.63 Aligned_cols=41 Identities=29% Similarity=0.353 Sum_probs=29.5
Q ss_pred hHHHHHHHhcccCCCCCcHHHHHHHHHhCCCCCCChHHHHHHH
Q 033697 19 AALTEFLSSLMGYTPTIPDELVEHYLAKSGFQCPDVRLIRLVA 61 (113)
Q Consensus 19 ~~L~eFL~~LdDY~PtIPDaVt~yYL~~aGf~~~D~RI~RLIS 61 (113)
.-|..|+..|- .|+||.++.+-+++-+..+..+.|+..+-.
T Consensus 85 ~lLK~flreLP--ePLi~~~l~~~~~~~~~~~~~~~~~~~l~~ 125 (209)
T 2ee4_A 85 GALKAFFADLP--DPLIPYSLHPELLEAAKIPDKTERLHALKE 125 (209)
T ss_dssp HHHHHHHHHSS--SCSSCTTTHHHHHHHHSCSSHHHHHHHHHH
T ss_pred HHHHHHHHhCC--CccCCHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 44667888776 599999999999888776655556555443
No 44
>1uqv_A STE50 protein; SAM, sterIle alpha motif, helical, protein-protein interaction domain, growth arrest, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.60.1.2 PDB: 1z1v_A
Probab=23.15 E-value=57 Score=22.25 Aligned_cols=30 Identities=10% Similarity=0.117 Sum_probs=24.1
Q ss_pred ccCCCCCcHHHHHHHHHhCCCCCCChHHHH
Q 033697 29 MGYTPTIPDELVEHYLAKSGFQCPDVRLIR 58 (113)
Q Consensus 29 dDY~PtIPDaVt~yYL~~aGf~~~D~RI~R 58 (113)
+++.-==||+|+.......||+-.|+-+.|
T Consensus 7 ~~v~~Wt~~~V~~W~~~~lg~~d~d~~~~~ 36 (85)
T 1uqv_A 7 EDFSQWSVDDVITWCISTLEVEETDPLCQR 36 (85)
T ss_dssp CCTTTCCHHHHHHHHHHHHSSCTTSTHHHH
T ss_pred cccccCCHHHHHHHHHHHhCCCCccHHHHH
Confidence 456666799999999999999998884443
No 45
>1t5q_A Gastric inhibitory polypeptide; GIP, molecular modelling, helix, diabetes, obesity, hormone/growth factor complex; NMR {Synthetic} SCOP: j.6.1.1
Probab=22.22 E-value=72 Score=17.84 Aligned_cols=15 Identities=20% Similarity=0.268 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHH
Q 033697 59 LVAVATQKFVAEVAT 73 (113)
Q Consensus 59 LISLAAQKFISDIa~ 73 (113)
|=.+|||+||.-+.+
T Consensus 14 l~~~~ak~fv~wLl~ 28 (30)
T 1t5q_A 14 MDKIHQQDFVNWLLA 28 (30)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc
Confidence 457899999988765
No 46
>1vlh_A Phosphopantetheine adenylyltransferase; TM0741, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: PNS; 2.20A {Thermotoga maritima} SCOP: c.26.1.3
Probab=21.96 E-value=1.1e+02 Score=21.36 Aligned_cols=32 Identities=16% Similarity=0.006 Sum_probs=26.2
Q ss_pred CCchHHHHHHHhcccCCCCCcHHHHHHHHHhC
Q 033697 16 DDDAALTEFLSSLMGYTPTIPDELVEHYLAKS 47 (113)
Q Consensus 16 ~~d~~L~eFL~~LdDY~PtIPDaVt~yYL~~a 47 (113)
-+...+++.+..=.+....+|++|.+|..++.
T Consensus 137 iSST~IR~~i~~g~~i~~lvP~~V~~yI~~~~ 168 (173)
T 1vlh_A 137 ISSSLVKEVALYGGDVTEWVPPEVARALNEKL 168 (173)
T ss_dssp CCHHHHHHHHHTTCCCTTTSCHHHHHHHHHHT
T ss_pred eeHHHHHHHHHcCCChhHcCCHHHHHHHHHHH
Confidence 45678888887667788999999999988764
No 47
>2qtr_A Nicotinate (nicotinamide) nucleotide adenylyltran; NAD, nucleotidyltransferase, pyridine nucleotide biosynthesi transferase; HET: NXX; 1.70A {Bacillus anthracis} PDB: 3dv2_A 3mla_A* 3hfj_A* 3mlb_A* 3mmx_A* 3e27_A* 2qtn_A* 2qtm_A*
Probab=21.87 E-value=1e+02 Score=21.02 Aligned_cols=32 Identities=9% Similarity=-0.003 Sum_probs=26.3
Q ss_pred CCCchHHHHHHHhcccCCCCCcHHHHHHHHHh
Q 033697 15 HDDDAALTEFLSSLMGYTPTIPDELVEHYLAK 46 (113)
Q Consensus 15 ~~~d~~L~eFL~~LdDY~PtIPDaVt~yYL~~ 46 (113)
.-+...+++.+..=++....+|++|.+|..++
T Consensus 153 ~iSST~IR~~l~~g~~~~~lvP~~V~~yI~~~ 184 (189)
T 2qtr_A 153 AVSSSLLRERYKEKKTCKYLLPEKVQVYIERN 184 (189)
T ss_dssp CCCHHHHHHHHHTTCCCTTTSCHHHHHHHHHT
T ss_pred ccCHHHHHHHHHcCCCchhcCCHHHHHHHHHc
Confidence 45678889998877788889999999987654
No 48
>4g3o_A E3 ubiquitin-protein ligase AMFR; all-helical structure, BAG6; 1.60A {Homo sapiens}
Probab=21.30 E-value=58 Score=20.73 Aligned_cols=39 Identities=15% Similarity=0.231 Sum_probs=28.9
Q ss_pred hHHHHHHHhcccCCCCCcHHHHHHHHHhCCCCCCChHHHHH
Q 033697 19 AALTEFLSSLMGYTPTIPDELVEHYLAKSGFQCPDVRLIRL 59 (113)
Q Consensus 19 ~~L~eFL~~LdDY~PtIPDaVt~yYL~~aGf~~~D~RI~RL 59 (113)
..|.+-.+++.+--|-+|.+.+.+=|++.| +-+.-+-|+
T Consensus 15 sql~~Mve~V~~mFPqv~~~~I~~DL~rTg--SVe~TienI 53 (58)
T 4g3o_A 15 GQLNAMAHQIQEMFPQVPYHLVLQDLQLTR--SVEITTDNI 53 (58)
T ss_dssp HHHHHHHHHHHHHCTTSCHHHHHHHHHHHC--CHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHhC--CHHHHHHHH
Confidence 356666777778899999999999999985 444444444
No 49
>2d2p_A Pituitary adenylate cyclase activating polypeptide-38; hormone/growth factor complex; NMR {Homo sapiens} PDB: 2jod_B
Probab=21.26 E-value=73 Score=18.69 Aligned_cols=16 Identities=25% Similarity=0.324 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 033697 59 LVAVATQKFVAEVATD 74 (113)
Q Consensus 59 LISLAAQKFISDIa~D 74 (113)
|=.+||||||..+.+.
T Consensus 14 l~~~~ak~fl~~l~~k 29 (39)
T 2d2p_A 14 RKQMAVKKYLAAVLGK 29 (39)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcC
Confidence 3467999999999853
No 50
>1qjc_A Phosphopantetheine adenylyltransferase; coenzyme A biosynthesis, nucleotidyltransferase; HET: PNS; 1.64A {Escherichia coli} SCOP: c.26.1.3 PDB: 1h1t_A* 1gn8_A* 1b6t_A* 3l92_A* 3l93_A
Probab=21.20 E-value=62 Score=21.41 Aligned_cols=31 Identities=16% Similarity=0.188 Sum_probs=24.6
Q ss_pred CCchHHHHHHHhcccCCCCCcHHHHHHHHHh
Q 033697 16 DDDAALTEFLSSLMGYTPTIPDELVEHYLAK 46 (113)
Q Consensus 16 ~~d~~L~eFL~~LdDY~PtIPDaVt~yYL~~ 46 (113)
-+...+++.+..=++..-.+|++|.+|..++
T Consensus 126 iSST~IR~~i~~g~~~~~~vP~~V~~yI~~~ 156 (158)
T 1qjc_A 126 ISSSLVKEVARHQGDVTHFLPENVHQALMAK 156 (158)
T ss_dssp CCHHHHHHHHHTTCCCGGGSCHHHHHHHHHH
T ss_pred cCHHHHHHHHHcCCChhHhCCHHHHHHHHHh
Confidence 4567788888766677778999999998765
Done!