Query 033699
Match_columns 113
No_of_seqs 49 out of 51
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 08:24:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033699.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033699hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iuq_A Glycerol-3-phosphate ac 100.0 3.2E-40 1.1E-44 274.7 7.8 111 1-111 257-367 (367)
2 3sri_B Rhoptry NECK protein 2; 41.8 6.3 0.00022 22.2 0.3 9 23-31 14-22 (29)
3 1nmr_A Poly(A)-binding protein 35.1 25 0.00087 23.7 2.5 32 63-94 17-48 (85)
4 3bww_A Protein of unknown func 34.8 8.9 0.0003 31.2 0.2 25 29-53 45-69 (307)
5 3zwz_B RON2, rhoptry NECK prot 34.7 7.9 0.00027 23.1 -0.1 12 20-31 16-28 (39)
6 3kuj_A Polyadenylate-binding p 34.6 23 0.00078 24.0 2.2 32 63-94 14-45 (88)
7 2qwo_B Putative tyrosine-prote 33.8 42 0.0014 22.3 3.5 18 73-90 74-91 (92)
8 1iur_A KIAA0730 protein; DNAJ 31.3 68 0.0023 20.7 4.1 23 74-96 56-78 (88)
9 2dyd_A Poly(A)-binding protein 28.3 19 0.00064 24.3 0.9 32 63-94 16-47 (85)
10 1v54_E Cytochrome C oxidase po 27.9 19 0.00066 25.6 1.0 24 19-42 36-59 (109)
11 3bvo_A CO-chaperone protein HS 25.8 71 0.0024 23.8 3.8 62 20-90 32-105 (207)
12 2ctr_A DNAJ homolog subfamily 25.7 19 0.00065 22.8 0.6 17 74-90 45-61 (88)
13 1ifw_A Polyadenylate-binding p 24.5 30 0.001 23.6 1.4 30 65-94 16-47 (92)
14 2yqr_A KIAA0907 protein; struc 24.5 26 0.0009 24.4 1.2 30 62-92 79-111 (119)
15 1ngm_B Transcription factor II 23.5 84 0.0029 20.6 3.4 38 52-91 29-66 (72)
16 3ozb_A Methylthioadenosine pho 23.4 25 0.00084 27.1 0.9 48 7-59 66-113 (259)
17 2ej9_A Putative biotin ligase; 22.8 1.6E+02 0.0054 21.8 5.3 47 42-89 119-171 (237)
18 2cci_F Cell division control p 22.6 28 0.00096 19.7 0.8 27 24-50 2-28 (30)
19 1vmk_A Purine nucleoside phosp 21.7 32 0.0011 26.8 1.3 43 11-59 91-136 (277)
20 2y69_E Cytochrome C oxidase su 21.3 30 0.001 25.9 1.0 43 19-66 79-121 (152)
21 3hho_A CO-chaperone protein HS 21.2 1.4E+02 0.0048 21.3 4.6 21 71-91 47-67 (174)
22 2ys8_A RAB-related GTP-binding 20.4 1.3E+02 0.0044 19.0 3.8 23 74-96 65-87 (90)
No 1
>1iuq_A Glycerol-3-phosphate acyltransferase; open twisted alpha/beta, four helix bundle; 1.55A {Cucurbita moschata} SCOP: c.112.1.1 PDB: 1k30_A
Probab=100.00 E-value=3.2e-40 Score=274.75 Aligned_cols=111 Identities=69% Similarity=1.171 Sum_probs=99.8
Q ss_pred ChhhhhhcCCCcceeeehhhhccCCCCChhhhhhhcceeeeeeecceeeeccccchhhhhhccCChHHHHHHHHHHHHHH
Q 033699 1 MRRLAEHSGIPGHIYPLALLCHDIMPPPPQVEREVGEKRVISFHGAGLSVAPEISFADIITASKNPEEAKEVYTQAFYNS 80 (113)
Q Consensus 1 mR~L~~~s~~ptHfyPlAL~tydImPPP~~vekeIGE~R~i~f~gvgls~g~EI~~~~~~~~~~~~eear~a~s~~ly~~ 80 (113)
||+||+++|+||||||+||.||||||||++|||++||+|+++|++|+|+|+++|++++++..+++++++++++++++|++
T Consensus 257 ~~~LA~ksg~P~hIvPvaI~t~~imppp~~ve~~~g~~r~i~~~~V~v~ig~pI~~~~l~~~~e~~~e~~~~l~e~v~~~ 336 (367)
T 1iuq_A 257 MRRLIQHSDVPGHLFPLALLCHDIMPPPSQVEIEIGEKRVIAFNGAGLSVAPEISFEEIAATHKNPEEVREAYSKALFDS 336 (367)
T ss_dssp HHHHHHTSSSCEEEEEEEEECGGGSCCC----------CCCCCBCCEEEECCCCCHHHHHHTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCceEEEEEEEeccccCCcccccccccccceeecccEEEEECCccchhhccccccchHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCccCCccccCCCC
Q 033699 81 VTEQYNVLKSAIHGQQGLKASIPSVSLSQPW 111 (113)
Q Consensus 81 V~~~Y~~l~~AI~~~~g~~as~~~~slsqpw 111 (113)
|+++|++|++||||+||++||||+|||||||
T Consensus 337 I~~~y~~l~~~i~~~~~~~~~~~~~~~~~~~ 367 (367)
T 1iuq_A 337 VAMQYNVLKTAISGKQGLGASTADVSLSQPW 367 (367)
T ss_dssp HHHHHHHHHHHTTTCCGGGGCCSSCCEECCC
T ss_pred HHHHHHHHHHHHhccccccccCCcccccCCC
Confidence 9999999999999999999999999999999
No 2
>3sri_B Rhoptry NECK protein 2; AMA1, RON2, malaria, cell invasion; 1.60A {Plasmodium falciparum}
Probab=41.82 E-value=6.3 Score=22.22 Aligned_cols=9 Identities=44% Similarity=0.855 Sum_probs=7.2
Q ss_pred cCCCCChhh
Q 033699 23 DIMPPPPQV 31 (113)
Q Consensus 23 dImPPP~~v 31 (113)
-.||||++|
T Consensus 14 s~~~PPkqi 22 (29)
T 3sri_B 14 TRMSPPQQI 22 (29)
T ss_dssp ESSSSCCEE
T ss_pred cccCchHHH
Confidence 368999886
No 3
>1nmr_A Poly(A)-binding protein; all helical domain, peptide binding protein; NMR {Trypanosoma cruzi} SCOP: a.144.1.1
Probab=35.07 E-value=25 Score=23.68 Aligned_cols=32 Identities=22% Similarity=0.422 Sum_probs=27.2
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 033699 63 SKNPEEAKEVYTQAFYNSVTEQYNVLKSAIHG 94 (113)
Q Consensus 63 ~~~~eear~a~s~~ly~~V~~~Y~~l~~AI~~ 94 (113)
.-++++.|+.+.++||..|...|..+-.=|+|
T Consensus 17 ~a~p~~Qkq~LGE~LyplV~~~~p~~AgKITG 48 (85)
T 1nmr_A 17 NLTPEQQKNVLGERLYNHIVAINPAAAAKVTG 48 (85)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHHhCccccchhhH
Confidence 34577899999999999999999888777776
No 4
>3bww_A Protein of unknown function DUF692/COG3220; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.20A {Haemophilus somnus}
Probab=34.82 E-value=8.9 Score=31.19 Aligned_cols=25 Identities=32% Similarity=0.304 Sum_probs=20.4
Q ss_pred hhhhhhhcceeeeeeecceeeeccc
Q 033699 29 PQVEREVGEKRVISFHGAGLSVAPE 53 (113)
Q Consensus 29 ~~vekeIGE~R~i~f~gvgls~g~E 53 (113)
...=.+|.|+.-+++||||||+|..
T Consensus 45 ~~~L~~i~e~~Pl~~HGv~LSlG~~ 69 (307)
T 3bww_A 45 RYQFDKVAEKIPILIHGLSLSLGGQ 69 (307)
T ss_dssp HHHHHHHTTTSCEEEBCSCCCTTCS
T ss_pred HHHHHHHHhcCCEEEeeccccccCC
Confidence 3444578899999999999999865
No 5
>3zwz_B RON2, rhoptry NECK protein 2; immune system, malaria, moving junction; 2.10A {Plasmodium falciparum}
Probab=34.69 E-value=7.9 Score=23.13 Aligned_cols=12 Identities=42% Similarity=0.899 Sum_probs=9.6
Q ss_pred hhcc-CCCCChhh
Q 033699 20 LCHD-IMPPPPQV 31 (113)
Q Consensus 20 ~tyd-ImPPP~~v 31 (113)
.||- .||||+++
T Consensus 16 SC~ts~i~PPk~~ 28 (39)
T 3zwz_B 16 SCFTTRMSPPQQI 28 (39)
T ss_dssp SEEEESSSSCCEE
T ss_pred hhhhccCCcHHHH
Confidence 5776 89999876
No 6
>3kuj_A Polyadenylate-binding protein 1; protein-protein complex, methylation, mRNA processing, mRNA nucleus, phosphoprotein, RNA-binding, spliceosome; 1.40A {Homo sapiens} PDB: 3ktr_A 3kui_A 3ktp_A 3kus_A* 3kut_A 3pkn_A 2rqg_B 2rqh_B 3kur_A 3pth_A 2x04_A
Probab=34.62 E-value=23 Score=23.97 Aligned_cols=32 Identities=22% Similarity=0.388 Sum_probs=25.1
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 033699 63 SKNPEEAKEVYTQAFYNSVTEQYNVLKSAIHG 94 (113)
Q Consensus 63 ~~~~eear~a~s~~ly~~V~~~Y~~l~~AI~~ 94 (113)
.-++++.|+.+.++||..|...|..+-.=|+|
T Consensus 14 ~a~p~~Qkq~LGE~Lyp~V~~~~p~~A~KITG 45 (88)
T 3kuj_A 14 SAPPQEQKQMLGERLFPLIQAMHPTLAGKITG 45 (88)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHCTTTHHHHHH
T ss_pred cCCHHHHHHHHHHHhHHHHHhhCCCccchhhh
Confidence 33678899999999999999888766665655
No 7
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=33.84 E-value=42 Score=22.30 Aligned_cols=18 Identities=6% Similarity=0.469 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 033699 73 YTQAFYNSVTEQYNVLKS 90 (113)
Q Consensus 73 ~s~~ly~~V~~~Y~~l~~ 90 (113)
.++..|..|++.|.+|+.
T Consensus 74 ~A~~~F~~i~eAyevL~~ 91 (92)
T 2qwo_B 74 YAKMIFMELNDAWSEFEN 91 (92)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 578899999999999985
No 8
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=31.28 E-value=68 Score=20.74 Aligned_cols=23 Identities=13% Similarity=0.234 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCC
Q 033699 74 TQAFYNSVTEQYNVLKSAIHGQQ 96 (113)
Q Consensus 74 s~~ly~~V~~~Y~~l~~AI~~~~ 96 (113)
++..|..|++.|++|......++
T Consensus 56 a~~~F~~I~~AYevL~~~~~r~~ 78 (88)
T 1iur_A 56 ANEVFKHLQNEINRLEKQAFLDQ 78 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHhhccccc
Confidence 56789999999999999877544
No 9
>2dyd_A Poly(A)-binding protein; alpha helical protein, RNA binding protein; NMR {Triticum aestivum}
Probab=28.32 E-value=19 Score=24.34 Aligned_cols=32 Identities=16% Similarity=0.289 Sum_probs=26.5
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 033699 63 SKNPEEAKEVYTQAFYNSVTEQYNVLKSAIHG 94 (113)
Q Consensus 63 ~~~~eear~a~s~~ly~~V~~~Y~~l~~AI~~ 94 (113)
.-++++.|+.+.++||-.|...|..+-.=|+|
T Consensus 16 ~~~p~~Qkq~LGE~LyplV~~~~p~~AgKITG 47 (85)
T 2dyd_A 16 NSPPETQRMMLGENLYPLVDQLEHDQAAKVTG 47 (85)
T ss_dssp CCCHHHHHHHHHHHHHHHHCCSCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHhCccccchhhh
Confidence 34678899999999999999988887776665
No 10
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=27.87 E-value=19 Score=25.60 Aligned_cols=24 Identities=21% Similarity=0.452 Sum_probs=19.8
Q ss_pred hhhccCCCCChhhhhhhcceeeee
Q 033699 19 LLCHDIMPPPPQVEREVGEKRVIS 42 (113)
Q Consensus 19 L~tydImPPP~~vekeIGE~R~i~ 42 (113)
|+.||+.|.|.-|+..+---|-+|
T Consensus 36 l~~~DlVP~P~ii~aaLrAcRRvN 59 (109)
T 1v54_E 36 LVGYDLVPEPKIIDAALRACRRLN 59 (109)
T ss_dssp HTTSSBCCCHHHHHHHHHHHHHTT
T ss_pred HhccccCCCcHHHHHHHHHHHHhh
Confidence 578999999999999886655555
No 11
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=25.77 E-value=71 Score=23.75 Aligned_cols=62 Identities=13% Similarity=0.231 Sum_probs=37.0
Q ss_pred hhccCCCCChhhhhhhcceeeeeeecceeeeccccchhhhhhcc------------CChHHHHHHHHHHHHHHHHHHHHH
Q 033699 20 LCHDIMPPPPQVEREVGEKRVISFHGAGLSVAPEISFADIITAS------------KNPEEAKEVYTQAFYNSVTEQYNV 87 (113)
Q Consensus 20 ~tydImPPP~~vekeIGE~R~i~f~gvgls~g~EI~~~~~~~~~------------~~~eear~a~s~~ly~~V~~~Y~~ 87 (113)
.|.-|.||.... -.|.=.||+-...++.++|...+ .+..++.+.++...|..|++.|.+
T Consensus 32 ~c~~~q~~~~~~---------d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~v 102 (207)
T 3bvo_A 32 QCRALQAPDPTR---------DYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKT 102 (207)
T ss_dssp TTCCBCCCCTTC---------CHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCCCCCC---------CHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 566777775332 23444566554456666664221 111223345677889999999999
Q ss_pred HHH
Q 033699 88 LKS 90 (113)
Q Consensus 88 l~~ 90 (113)
|+.
T Consensus 103 Lsd 105 (207)
T 3bvo_A 103 LLA 105 (207)
T ss_dssp HHS
T ss_pred HCC
Confidence 973
No 12
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.70 E-value=19 Score=22.79 Aligned_cols=17 Identities=24% Similarity=0.538 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 033699 74 TQAFYNSVTEQYNVLKS 90 (113)
Q Consensus 74 s~~ly~~V~~~Y~~l~~ 90 (113)
++..|..|++.|++|..
T Consensus 45 a~~~f~~i~~Ay~~L~d 61 (88)
T 2ctr_A 45 AEAKFREIAEAYETLSD 61 (88)
T ss_dssp HHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHCC
Confidence 45678889999999864
No 13
>1ifw_A Polyadenylate-binding protein, cytoplasmic and nuclear; all-helical domain, RNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.144.1.1
Probab=24.54 E-value=30 Score=23.61 Aligned_cols=30 Identities=13% Similarity=0.314 Sum_probs=24.8
Q ss_pred ChHHHHHHHHHHHHHHHHH--HHHHHHHhhcC
Q 033699 65 NPEEAKEVYTQAFYNSVTE--QYNVLKSAIHG 94 (113)
Q Consensus 65 ~~eear~a~s~~ly~~V~~--~Y~~l~~AI~~ 94 (113)
++++.|+.+.++||..|.. .|..+-.=|+|
T Consensus 16 ~p~~Qkq~LGE~LyplV~~~~~~pelAgKITG 47 (92)
T 1ifw_A 16 YQQKQRQALGEQLYKKVSAKTSNEEAAGKITG 47 (92)
T ss_dssp SCHHHHHHHHHHHHHHHGGGCCCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHhhcCccccchhhH
Confidence 5778899999999999998 87777666665
No 14
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.48 E-value=26 Score=24.35 Aligned_cols=30 Identities=23% Similarity=0.444 Sum_probs=21.8
Q ss_pred ccCChHH---HHHHHHHHHHHHHHHHHHHHHHhh
Q 033699 62 ASKNPEE---AKEVYTQAFYNSVTEQYNVLKSAI 92 (113)
Q Consensus 62 ~~~~~ee---ar~a~s~~ly~~V~~~Y~~l~~AI 92 (113)
...|.+. |++ +.+.|-..|.++|+.+++..
T Consensus 79 ~a~~~e~i~~A~~-~Ie~Ll~~v~~~~~~~~~q~ 111 (119)
T 2yqr_A 79 SHPKPEGLAAAKK-LCENLLQTVHAEYSRFVNQI 111 (119)
T ss_dssp EESSHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred EeCCHHHHHHHHH-HHHHHhhchHHHHHHHHHhh
Confidence 3455554 444 56788899999999998864
No 15
>1ngm_B Transcription factor IIIB BRF1 subunit; TFIIIB, TBP, TAF, protein-DNA complex, transcription/DNA complex; 2.95A {Saccharomyces cerevisiae} SCOP: j.104.1.1
Probab=23.47 E-value=84 Score=20.60 Aligned_cols=38 Identities=8% Similarity=0.193 Sum_probs=28.6
Q ss_pred cccchhhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHh
Q 033699 52 PEISFADIITASKNPEEAKEVYTQAFYNSVTEQYNVLKSA 91 (113)
Q Consensus 52 ~EI~~~~~~~~~~~~eear~a~s~~ly~~V~~~Y~~l~~A 91 (113)
+.||-++|..-.=|++|++ +-+.+|...+..|-.-+++
T Consensus 29 sDiDD~Eid~yiLteeEv~--~K~~iW~~~N~dyL~eq~~ 66 (72)
T 1ngm_B 29 EDVDDEELNAHLLNEEASK--LKERIWIGLNADFLLEQES 66 (72)
T ss_dssp TTSCCSSGGGSSCCHHHHH--HHHHHHHHHTTTHHHHHHH
T ss_pred ccCCHHHHHHhhCCHHHHH--HHHHHHHHHhHHHHHHHHH
Confidence 4477677776677888863 4469999999999876654
No 16
>3ozb_A Methylthioadenosine phosphorylase; 5'-methylthioinosine,phosphorylase, transferase; HET: HPA; 2.80A {Pseudomonas aeruginosa}
Probab=23.42 E-value=25 Score=27.09 Aligned_cols=48 Identities=15% Similarity=0.272 Sum_probs=30.4
Q ss_pred hcCCCcceeeehhhhccCCCCChhhhhhhcceeeeeeecceeeeccccchhhh
Q 033699 7 HSGIPGHIYPLALLCHDIMPPPPQVEREVGEKRVISFHGAGLSVAPEISFADI 59 (113)
Q Consensus 7 ~s~~ptHfyPlAL~tydImPPP~~vekeIGE~R~i~f~gvgls~g~EI~~~~~ 59 (113)
+.|. +|.||..-.+|.. +-.+=+.+|=+++|+.+-+| ++.+++...++
T Consensus 66 rhG~-gh~~~~~~V~~~a---~i~~l~~~Gv~~II~tgaaG-gl~~~l~~GDl 113 (259)
T 3ozb_A 66 RHGH-PHRFPPHQVNYRA---NLWALKQAGAEAVIAVNAVG-GIHAAMGTGHL 113 (259)
T ss_dssp SSCC----CCGGGSCHHH---HHHHHHHHTCSEEEEEEEEE-ECSTTSCTTCE
T ss_pred CcCC-CcccChhhcchHH---HHHHHHHcCCCEEEEcccee-ecccccCCCCE
Confidence 3455 8888755555532 34555799999999998888 56777666554
No 17
>2ej9_A Putative biotin ligase; biotin biosynthesis, monomer, X-RAY diffraction, structural genomics, NPPSFA; HET: BTN; 2.00A {Methanocaldococcus jannaschii}
Probab=22.80 E-value=1.6e+02 Score=21.83 Aligned_cols=47 Identities=19% Similarity=0.192 Sum_probs=25.1
Q ss_pred eeecceeeeccccchhhhhhccCC------hHHHHHHHHHHHHHHHHHHHHHHH
Q 033699 42 SFHGAGLSVAPEISFADIITASKN------PEEAKEVYTQAFYNSVTEQYNVLK 89 (113)
Q Consensus 42 ~f~gvgls~g~EI~~~~~~~~~~~------~eear~a~s~~ly~~V~~~Y~~l~ 89 (113)
---|+|||+... .-+++....-+ .+-.|+.+...+.+.+.+.|..+.
T Consensus 119 vViGiGiNv~~~-~p~~l~~~atsL~~~~~~~~~r~~ll~~ll~~l~~~~~~~~ 171 (237)
T 2ej9_A 119 MIIGIGINVNNQ-IRNEIREIAISLKEITGKELDKVEILSNFLKTFESYLEKLK 171 (237)
T ss_dssp EEEEEEECSSSC-CCGGGGGTBCCHHHHHSSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCC-CcchhhhhhccHhHhHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 456899998754 11222110000 011355667777777777776654
No 18
>2cci_F Cell division control protein 6 homolog; complex (transferase/cell division), protein kinases, cell C recruitment, substrate recognition; HET: TPO ATP; 2.7A {Homo sapiens}
Probab=22.62 E-value=28 Score=19.68 Aligned_cols=27 Identities=22% Similarity=0.291 Sum_probs=21.1
Q ss_pred CCCCChhhhhhhcceeeeeeecceeee
Q 033699 24 IMPPPPQVEREVGEKRVISFHGAGLSV 50 (113)
Q Consensus 24 ImPPP~~vekeIGE~R~i~f~gvgls~ 50 (113)
.|-||+|-.||.|-.|.-.--|-+|.|
T Consensus 2 ~cSPpKq~kkengpp~~~t~kgrrLvF 28 (30)
T 2cci_F 2 HASPRKQGKKENGPPHSHTLKGRRLVF 28 (30)
T ss_pred CCCccccccccCCCCcccccccceeec
Confidence 477999999999999776666666654
No 19
>1vmk_A Purine nucleoside phosphorylase; TM1596, structural genomics protein structure initiative, PSI, joint center for structu genomics; HET: GUN; 2.01A {Thermotoga maritima} SCOP: c.56.2.1
Probab=21.71 E-value=32 Score=26.84 Aligned_cols=43 Identities=30% Similarity=0.471 Sum_probs=33.1
Q ss_pred Cccee---eehhhhccCCCCChhhhhhhcceeeeeeecceeeeccccchhhh
Q 033699 11 PGHIY---PLALLCHDIMPPPPQVEREVGEKRVISFHGAGLSVAPEISFADI 59 (113)
Q Consensus 11 ptHfy---PlAL~tydImPPP~~vekeIGE~R~i~f~gvgls~g~EI~~~~~ 59 (113)
.||+| |.+..+| |-.+=+.+|=+++|+.+.+| ++.+++...++
T Consensus 91 rgH~yeG~~p~~V~~-----~i~~l~~lGv~~II~tgaaG-~l~~~l~~GDl 136 (277)
T 1vmk_A 91 RFHLYEGHDPATVAF-----PVYLAKYVGVKGVVVTNAAG-AINPEFKPGEI 136 (277)
T ss_dssp CCCGGGTCCHHHHHH-----HHHHHHHHTCCEEEEEEEEE-ECSTTCCTTCE
T ss_pred CCcccCCCCHHHHHH-----HHHHHHHcCCCEEEEeccee-cCCCCCCCCCE
Confidence 36888 8888888 45677899999999998887 56666665553
No 20
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=21.35 E-value=30 Score=25.91 Aligned_cols=43 Identities=12% Similarity=0.253 Sum_probs=27.3
Q ss_pred hhhccCCCCChhhhhhhcceeeeeeecceeeeccccchhhhhhccCCh
Q 033699 19 LLCHDIMPPPPQVEREVGEKRVISFHGAGLSVAPEISFADIITASKNP 66 (113)
Q Consensus 19 L~tydImPPP~~vekeIGE~R~i~f~gvgls~g~EI~~~~~~~~~~~~ 66 (113)
|+.||+.|.|.-|+..+---|-+|=-+..+-+ |+.+-..|++.
T Consensus 79 l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~-----lE~vK~K~~~~ 121 (152)
T 2y69_E 79 LVGYDLVPEPKIIDAALRACRRLNDFASAVRI-----LEVVKDKAGPH 121 (152)
T ss_dssp HTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHH-----HHHHHHHTTTC
T ss_pred HhccccCCCcHHHHHHHHHHHHhhhHHHHHHH-----HHHHHHhcCCc
Confidence 56899999999999988666655522222211 34444456555
No 21
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=21.20 E-value=1.4e+02 Score=21.29 Aligned_cols=21 Identities=14% Similarity=0.297 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 033699 71 EVYTQAFYNSVTEQYNVLKSA 91 (113)
Q Consensus 71 ~a~s~~ly~~V~~~Y~~l~~A 91 (113)
...+...|..|++.|.+|+.-
T Consensus 47 ~~~a~~~f~~In~AY~vL~dp 67 (174)
T 3hho_A 47 RLMAVQQAAQINDAYQTLKDP 67 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHSH
T ss_pred HHHHHHHHHHHHHHHHHHcCh
Confidence 446778999999999999753
No 22
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.41 E-value=1.3e+02 Score=19.02 Aligned_cols=23 Identities=13% Similarity=0.234 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCC
Q 033699 74 TQAFYNSVTEQYNVLKSAIHGQQ 96 (113)
Q Consensus 74 s~~ly~~V~~~Y~~l~~AI~~~~ 96 (113)
++..|..|++.|++|..-.....
T Consensus 65 ~~~~f~~i~~Ay~~L~d~~~R~~ 87 (90)
T 2ys8_A 65 SEDAFKAVVNARTALLKNIKSGP 87 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHHHHHCCcccccC
Confidence 34569999999999998776533
Done!