BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033700
(113 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|J Chain J, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|K Chain K, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|L Chain L, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
Length = 399
Score = 182 bits (461), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 89/148 (60%), Positives = 96/148 (64%), Gaps = 35/148 (23%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDY 60
MA KRI KEL DL +DPP CSAGPV +DMFHWQATIMGP+DSPY GGVF +TIHFP DY
Sbjct: 3 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 62
Query: 61 PFKPP-----------------------------------KVLLSICSLLTDPNPDDPLV 85
PFKPP KVLLSICSLL DPNPDDPLV
Sbjct: 63 PFKPPKVAFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV 122
Query: 86 PEIAHMYKSDKAKYESTARSWTQKYAMG 113
PEIA +YK+D+ KY AR WTQKYAMG
Sbjct: 123 PEIARIYKTDREKYNRIAREWTQKYAMG 150
>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|B Chain B, Structure Of The Ubch5 :chip U-Box Complex
Length = 152
Score = 180 bits (456), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 91/147 (61%), Positives = 98/147 (66%), Gaps = 35/147 (23%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDY 60
MA KRI KEL+DLQ+DPP CSAGPV +D+FHWQATIMGPSDSPY GGVF +TIHFP DY
Sbjct: 6 MALKRIQKELQDLQRDPPAQCSAGPVGDDLFHWQATIMGPSDSPYQGGVFFLTIHFPTDY 65
Query: 61 PFKPPKV-----------------------------------LLSICSLLTDPNPDDPLV 85
PFKPPKV LLSICSLL DPNPDDPLV
Sbjct: 66 PFKPPKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLV 125
Query: 86 PEIAHMYKSDKAKYESTARSWTQKYAM 112
P+IAH+YKSDK KY AR WTQKYAM
Sbjct: 126 PDIAHIYKSDKEKYNRLAREWTQKYAM 152
>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme
Length = 148
Score = 177 bits (448), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 87/146 (59%), Positives = 103/146 (70%), Gaps = 35/146 (23%)
Query: 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYP 61
+SKRI KEL DL++DPPTSCSAGPV +D++HWQA+IMGP+DSPYAGGVF ++IHFP DYP
Sbjct: 3 SSKRIAKELSDLERDPPTSCSAGPVGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYP 62
Query: 62 FKPP-----------------------------------KVLLSICSLLTDPNPDDPLVP 86
FKPP KVLLSICSLLTD NPDDPLVP
Sbjct: 63 FKPPKISFTTKIYHPNINANGNICLDILKDQWSPALTLSKVLLSICSLLTDANPDDPLVP 122
Query: 87 EIAHMYKSDKAKYESTARSWTQKYAM 112
EIAH+YK+D+ KYE+TAR WT+KYA+
Sbjct: 123 EIAHIYKTDRPKYEATAREWTKKYAV 148
>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating
Enzyme E2 From Toxoplasma Gondii
Length = 166
Score = 175 bits (443), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 88/145 (60%), Positives = 97/145 (66%), Gaps = 35/145 (24%)
Query: 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYP 61
A KRI KEL DL KDPPT+CSAGPV +DMFHWQATIMGP DSPY+GGVF + IHFP DYP
Sbjct: 22 ALKRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYP 81
Query: 62 FKPP-----------------------------------KVLLSICSLLTDPNPDDPLVP 86
FKPP KVLLSI SLLTDPNPDDPLVP
Sbjct: 82 FKPPKVNFTTKIYHPNINSQGAICLDILKDQWSPALTISKVLLSISSLLTDPNPDDPLVP 141
Query: 87 EIAHMYKSDKAKYESTARSWTQKYA 111
EIAH+YKSD+ +Y+ TAR W+QKYA
Sbjct: 142 EIAHLYKSDRMRYDQTAREWSQKYA 166
>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate
Length = 150
Score = 174 bits (442), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 88/147 (59%), Positives = 95/147 (64%), Gaps = 35/147 (23%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDY 60
MA KRI KEL DL +DPP CSAGPV +DMFHWQATIMGP+DSPY GGVF +TIHFP DY
Sbjct: 4 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 63
Query: 61 PFKPP-----------------------------------KVLLSICSLLTDPNPDDPLV 85
PFKPP KVLLSICSLL DPNPDDPLV
Sbjct: 64 PFKPPKVAFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV 123
Query: 86 PEIAHMYKSDKAKYESTARSWTQKYAM 112
PEIA +YK+D+ KY AR WTQKYAM
Sbjct: 124 PEIARIYKTDREKYNRIAREWTQKYAM 150
>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect
pdb|3JVZ|B Chain B, E2~ubiquitin-Hect
pdb|3JW0|A Chain A, E2~ubiquitin-Hect
pdb|3JW0|B Chain B, E2~ubiquitin-Hect
Length = 146
Score = 174 bits (442), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 88/146 (60%), Positives = 95/146 (65%), Gaps = 35/146 (23%)
Query: 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYP 61
ASKRI KEL DL +DPP CSAGPV +DMFHWQATIMGP+DSPY GGVF +TIHFP DYP
Sbjct: 1 ASKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 60
Query: 62 FKPPKV-----------------------------------LLSICSLLTDPNPDDPLVP 86
FKPPKV LLSICSLL DPNPDDPLVP
Sbjct: 61 FKPPKVAFTTRIYHPNINSNGSISLDILRSQWSPALKISKVLLSICSLLCDPNPDDPLVP 120
Query: 87 EIAHMYKSDKAKYESTARSWTQKYAM 112
EIA +YK+D+ KY AR WTQKYAM
Sbjct: 121 EIARIYKTDREKYNRIAREWTQKYAM 146
>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile88ala
Length = 149
Score = 174 bits (442), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 88/147 (59%), Positives = 95/147 (64%), Gaps = 35/147 (23%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDY 60
MA KRI KEL DL +DPP CSAGPV +DMFHWQATIMGP+DSPY GGVF +TIHFP DY
Sbjct: 3 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 62
Query: 61 PFKPPKV-----------------------------------LLSICSLLTDPNPDDPLV 85
PFKPPKV LLSICSLL DPNPDDPLV
Sbjct: 63 PFKPPKVAFTTRIYHPNINSNGSICLDALRSQWSPALTISKVLLSICSLLCDPNPDDPLV 122
Query: 86 PEIAHMYKSDKAKYESTARSWTQKYAM 112
PEIA +YK+D+ KY AR WTQKYAM
Sbjct: 123 PEIARIYKTDREKYNRIAREWTQKYAM 149
>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type
Length = 149
Score = 174 bits (442), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 88/147 (59%), Positives = 95/147 (64%), Gaps = 35/147 (23%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDY 60
MA KRI KEL DL +DPP CSAGPV +DMFHWQATIMGP+DSPY GGVF +TIHFP DY
Sbjct: 3 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 62
Query: 61 PFKPP-----------------------------------KVLLSICSLLTDPNPDDPLV 85
PFKPP KVLLSICSLL DPNPDDPLV
Sbjct: 63 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV 122
Query: 86 PEIAHMYKSDKAKYESTARSWTQKYAM 112
PEIA +YK+D+ KY AR WTQKYAM
Sbjct: 123 PEIARIYKTDREKYNRIAREWTQKYAM 149
>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating
Enzyme (E2) Ubch5b
Length = 152
Score = 174 bits (442), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 88/147 (59%), Positives = 95/147 (64%), Gaps = 35/147 (23%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDY 60
MA KRI KEL DL +DPP CSAGPV +DMFHWQATIMGP+DSPY GGVF +TIHFP DY
Sbjct: 6 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 65
Query: 61 PFKPP-----------------------------------KVLLSICSLLTDPNPDDPLV 85
PFKPP KVLLSICSLL DPNPDDPLV
Sbjct: 66 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV 125
Query: 86 PEIAHMYKSDKAKYESTARSWTQKYAM 112
PEIA +YK+D+ KY AR WTQKYAM
Sbjct: 126 PEIARIYKTDREKYNRIAREWTQKYAM 152
>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 149
Score = 174 bits (442), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 88/147 (59%), Positives = 95/147 (64%), Gaps = 35/147 (23%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDY 60
MA KRI KEL DL +DPP CSAGPV +DMFHWQATIMGP+DSPY GGVF +TIHFP DY
Sbjct: 3 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 62
Query: 61 PFKPP-----------------------------------KVLLSICSLLTDPNPDDPLV 85
PFKPP KVLLSICSLL DPNPDDPLV
Sbjct: 63 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV 122
Query: 86 PEIAHMYKSDKAKYESTARSWTQKYAM 112
PEIA +YK+D+ KY AR WTQKYAM
Sbjct: 123 PEIARIYKTDREKYNRIAREWTQKYAM 149
>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 174 bits (441), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 88/147 (59%), Positives = 95/147 (64%), Gaps = 35/147 (23%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDY 60
MA KRI KEL DL +DPP CSAGPV +DMFHWQATIMGP+DSPY GGVF +TIHFP DY
Sbjct: 19 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 78
Query: 61 PFKPPKV-----------------------------------LLSICSLLTDPNPDDPLV 85
PFKPPKV LLSICSLL DPNPDDPLV
Sbjct: 79 PFKPPKVAFTTRIYHPNINSNGSIXLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV 138
Query: 86 PEIAHMYKSDKAKYESTARSWTQKYAM 112
PEIA +YK+D+ KY AR WTQKYAM
Sbjct: 139 PEIARIYKTDREKYNRIAREWTQKYAM 165
>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ser94gly
Length = 149
Score = 174 bits (441), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 88/147 (59%), Positives = 95/147 (64%), Gaps = 35/147 (23%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDY 60
MA KRI KEL DL +DPP CSAGPV +DMFHWQATIMGP+DSPY GGVF +TIHFP DY
Sbjct: 3 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 62
Query: 61 PFKPP-----------------------------------KVLLSICSLLTDPNPDDPLV 85
PFKPP KVLLSICSLL DPNPDDPLV
Sbjct: 63 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWGPALTISKVLLSICSLLCDPNPDDPLV 122
Query: 86 PEIAHMYKSDKAKYESTARSWTQKYAM 112
PEIA +YK+D+ KY AR WTQKYAM
Sbjct: 123 PEIARIYKTDREKYNRIAREWTQKYAM 149
>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
pdb|1W4U|A Chain A, Nmr Solution Structure Of The Ubiquitin Conjugating Enzyme
Ubch5b
pdb|4A49|B Chain B, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
pdb|4A4B|C Chain C, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
pdb|4A4C|C Chain C, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 147
Score = 174 bits (441), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 88/147 (59%), Positives = 95/147 (64%), Gaps = 35/147 (23%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDY 60
MA KRI KEL DL +DPP CSAGPV +DMFHWQATIMGP+DSPY GGVF +TIHFP DY
Sbjct: 1 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 60
Query: 61 PFKPP-----------------------------------KVLLSICSLLTDPNPDDPLV 85
PFKPP KVLLSICSLL DPNPDDPLV
Sbjct: 61 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV 120
Query: 86 PEIAHMYKSDKAKYESTARSWTQKYAM 112
PEIA +YK+D+ KY AR WTQKYAM
Sbjct: 121 PEIARIYKTDREKYNRIAREWTQKYAM 147
>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 174 bits (441), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 88/147 (59%), Positives = 95/147 (64%), Gaps = 35/147 (23%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDY 60
MA KRI KEL DL +DPP CSAGPV +DMFHWQATIMGP+DSPY GGVF +TIHFP DY
Sbjct: 19 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 78
Query: 61 PFKPP-----------------------------------KVLLSICSLLTDPNPDDPLV 85
PFKPP KVLLSICSLL DPNPDDPLV
Sbjct: 79 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV 138
Query: 86 PEIAHMYKSDKAKYESTARSWTQKYAM 112
PEIA +YK+D+ KY AR WTQKYAM
Sbjct: 139 PEIARIYKTDREKYNRIAREWTQKYAM 165
>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme
Length = 157
Score = 173 bits (439), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 87/147 (59%), Positives = 95/147 (64%), Gaps = 35/147 (23%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDY 60
MA KRI KEL DL +DPP CSAGPV +DMFHWQATIMGP+DSPY GGVF +TIHFP DY
Sbjct: 11 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 70
Query: 61 PFKPP-----------------------------------KVLLSICSLLTDPNPDDPLV 85
PFKPP KVLLSICSLL DPNPDDPLV
Sbjct: 71 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV 130
Query: 86 PEIAHMYKSDKAKYESTARSWTQKYAM 112
PEIA +Y++D+ KY AR WTQKYAM
Sbjct: 131 PEIARIYQTDREKYNRIAREWTQKYAM 157
>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|D Chain D, Structure Of Birc7-Ubch5b-Ub Complex
Length = 147
Score = 173 bits (438), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 87/147 (59%), Positives = 94/147 (63%), Gaps = 35/147 (23%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDY 60
MA KRI KEL DL +DPP C AGPV +DMFHWQATIMGP+DSPY GGVF +TIHFP DY
Sbjct: 1 MALKRIHKELNDLARDPPAQCRAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 60
Query: 61 PFKPP-----------------------------------KVLLSICSLLTDPNPDDPLV 85
PFKPP KVLLSICSLL DPNPDDPLV
Sbjct: 61 PFKPPKVAFTTRIYHPAINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV 120
Query: 86 PEIAHMYKSDKAKYESTARSWTQKYAM 112
PEIA +YK+D+ KY AR WTQKYAM
Sbjct: 121 PEIARIYKTDREKYNRIAREWTQKYAM 147
>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 157
Score = 172 bits (437), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 87/147 (59%), Positives = 95/147 (64%), Gaps = 35/147 (23%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDY 60
MA KRI KEL DL +DPP CSAGPV +DMFHWQATIMGP+DSPY GGVF +TIHFP DY
Sbjct: 11 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 70
Query: 61 PFKPP-----------------------------------KVLLSICSLLTDPNPDDPLV 85
PFKPP KVLLSICSLL DPNPDDPLV
Sbjct: 71 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV 130
Query: 86 PEIAHMYKSDKAKYESTARSWTQKYAM 112
PEIA +YK+D+ KY +R WTQKYAM
Sbjct: 131 PEIARIYKTDRDKYNRISREWTQKYAM 157
>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate
Length = 147
Score = 172 bits (437), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 87/147 (59%), Positives = 95/147 (64%), Gaps = 35/147 (23%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDY 60
MA KRI KEL DL +DPP CSAGPV +DMFHWQATIMGP+DSPY GGVF +TIHFP DY
Sbjct: 1 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 60
Query: 61 PFKPP-----------------------------------KVLLSICSLLTDPNPDDPLV 85
PFKPP KVLLSICSLL DPNPDDPLV
Sbjct: 61 PFKPPKVAFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV 120
Query: 86 PEIAHMYKSDKAKYESTARSWTQKYAM 112
PEIA +YK+D+ KY +R WTQKYAM
Sbjct: 121 PEIARIYKTDRDKYNRISREWTQKYAM 147
>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile37ala
Length = 149
Score = 172 bits (436), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 87/147 (59%), Positives = 94/147 (63%), Gaps = 35/147 (23%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDY 60
MA KRI KEL DL +DPP CSAGPV +DMFHWQAT MGP+DSPY GGVF +TIHFP DY
Sbjct: 3 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATAMGPNDSPYQGGVFFLTIHFPTDY 62
Query: 61 PFKPP-----------------------------------KVLLSICSLLTDPNPDDPLV 85
PFKPP KVLLSICSLL DPNPDDPLV
Sbjct: 63 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV 122
Query: 86 PEIAHMYKSDKAKYESTARSWTQKYAM 112
PEIA +YK+D+ KY AR WTQKYAM
Sbjct: 123 PEIARIYKTDREKYNRIAREWTQKYAM 149
>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
Length = 163
Score = 172 bits (436), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 86/147 (58%), Positives = 101/147 (68%), Gaps = 35/147 (23%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDY 60
MA KRI +EL DL KDPP+S SAGPV +D+FHWQATIMGP+DSPYAGGVF ++IHFP DY
Sbjct: 1 MALKRINRELADLGKDPPSSSSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDY 60
Query: 61 PFKPP-----------------------------------KVLLSICSLLTDPNPDDPLV 85
PFKPP KVLLSI SLLTDPNPDDPLV
Sbjct: 61 PFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSISSLLTDPNPDDPLV 120
Query: 86 PEIAHMYKSDKAKYESTARSWTQKYAM 112
PEIAH+YK+D+++YE +AR WT+KYA+
Sbjct: 121 PEIAHVYKTDRSRYELSAREWTRKYAI 147
>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c
pdb|1X23|B Chain B, Crystal Structure Of Ubch5c
pdb|1X23|C Chain C, Crystal Structure Of Ubch5c
pdb|1X23|D Chain D, Crystal Structure Of Ubch5c
Length = 155
Score = 172 bits (435), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 87/147 (59%), Positives = 95/147 (64%), Gaps = 35/147 (23%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDY 60
MA KRI KEL DL +DPP CSAGPV +DMFHWQATIMGP+DSPY GGVF +TIHFP DY
Sbjct: 9 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 68
Query: 61 PFKPP-----------------------------------KVLLSICSLLTDPNPDDPLV 85
PFKPP KVLLSICSLL DPNPDDPLV
Sbjct: 69 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV 128
Query: 86 PEIAHMYKSDKAKYESTARSWTQKYAM 112
PEIA +YK+D+ KY +R WTQKYAM
Sbjct: 129 PEIARIYKTDRDKYNRISREWTQKYAM 155
>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure
Length = 149
Score = 170 bits (431), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 86/146 (58%), Positives = 94/146 (64%), Gaps = 35/146 (23%)
Query: 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYP 61
A KRI KEL DL +DPP CSAGPV +DMFHWQATIMGP+DSPY GGVF +TIHFP DYP
Sbjct: 4 ALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 63
Query: 62 FKPP-----------------------------------KVLLSICSLLTDPNPDDPLVP 86
FKPP KVLLSICSLL DPNPDDPLVP
Sbjct: 64 FKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVP 123
Query: 87 EIAHMYKSDKAKYESTARSWTQKYAM 112
EIA +YK+D+ KY +R WTQKYAM
Sbjct: 124 EIARIYKTDRDKYNRISREWTQKYAM 149
>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex
Length = 146
Score = 170 bits (431), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 86/146 (58%), Positives = 94/146 (64%), Gaps = 35/146 (23%)
Query: 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYP 61
A KRI KEL DL +DPP CSAGPV +DMFHWQATIMGP+DSPY GGVF +TIHFP DYP
Sbjct: 1 ALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 60
Query: 62 FKPP-----------------------------------KVLLSICSLLTDPNPDDPLVP 86
FKPP KVLLSICSLL DPNPDDPLVP
Sbjct: 61 FKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVP 120
Query: 87 EIAHMYKSDKAKYESTARSWTQKYAM 112
EIA +YK+D+ KY +R WTQKYAM
Sbjct: 121 EIARIYKTDRDKYNRISREWTQKYAM 146
>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3OJ4|D Chain D, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3PTF|A Chain A, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
pdb|3PTF|B Chain B, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
Length = 153
Score = 170 bits (430), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 87/147 (59%), Positives = 94/147 (63%), Gaps = 35/147 (23%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDY 60
MA KRI KEL DLQ+DPP CSAGPV +D+FHWQATIMGP DS Y GGVF +T+HFP DY
Sbjct: 7 MALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDY 66
Query: 61 PFKPP-----------------------------------KVLLSICSLLTDPNPDDPLV 85
PFKPP KVLLSICSLL DPNPDDPLV
Sbjct: 67 PFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLV 126
Query: 86 PEIAHMYKSDKAKYESTARSWTQKYAM 112
P+IA +YKSDK KY AR WTQKYAM
Sbjct: 127 PDIAQIYKSDKEKYNRHAREWTQKYAM 153
>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|D Chain D, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|F Chain F, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|H Chain H, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 149
Score = 170 bits (430), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 87/147 (59%), Positives = 94/147 (63%), Gaps = 35/147 (23%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDY 60
MA KRI KEL DLQ+DPP CSAGPV +D+FHWQATIMGP DS Y GGVF +T+HFP DY
Sbjct: 3 MALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDY 62
Query: 61 PFKPP-----------------------------------KVLLSICSLLTDPNPDDPLV 85
PFKPP KVLLSICSLL DPNPDDPLV
Sbjct: 63 PFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLV 122
Query: 86 PEIAHMYKSDKAKYESTARSWTQKYAM 112
P+IA +YKSDK KY AR WTQKYAM
Sbjct: 123 PDIAQIYKSDKEKYNRHAREWTQKYAM 149
>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
pdb|2C4P|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
Length = 165
Score = 170 bits (430), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 87/147 (59%), Positives = 94/147 (63%), Gaps = 35/147 (23%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDY 60
MA KRI KEL DLQ+DPP CSAGPV +D+FHWQATIMGP DS Y GGVF +T+HFP DY
Sbjct: 19 MALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDY 78
Query: 61 PFKPP-----------------------------------KVLLSICSLLTDPNPDDPLV 85
PFKPP KVLLSICSLL DPNPDDPLV
Sbjct: 79 PFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLV 138
Query: 86 PEIAHMYKSDKAKYESTARSWTQKYAM 112
P+IA +YKSDK KY AR WTQKYAM
Sbjct: 139 PDIAQIYKSDKEKYNRHAREWTQKYAM 165
>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin-
Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans:
Functional And Evolutionary Significance
Length = 150
Score = 170 bits (430), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 85/147 (57%), Positives = 95/147 (64%), Gaps = 35/147 (23%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDY 60
MA KRI KEL+DL +DPP CSAGPV +D+FHWQATIMGP +SPY GGVF +TIHFP DY
Sbjct: 4 MALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDY 63
Query: 61 PFKPP-----------------------------------KVLLSICSLLTDPNPDDPLV 85
PFKPP KVLLSICSLL DPNPDDPLV
Sbjct: 64 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV 123
Query: 86 PEIAHMYKSDKAKYESTARSWTQKYAM 112
PEIA +YK+D+ +Y AR WTQKYAM
Sbjct: 124 PEIARIYKTDRERYNQLAREWTQKYAM 150
>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
pdb|4AP4|E Chain E, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 153
Score = 169 bits (427), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 86/147 (58%), Positives = 93/147 (63%), Gaps = 35/147 (23%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDY 60
MA KRI KEL DLQ+DPP C AGPV +D+FHWQATIMGP DS Y GGVF +T+HFP DY
Sbjct: 7 MALKRIQKELSDLQRDPPAHCRAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDY 66
Query: 61 PFKPP-----------------------------------KVLLSICSLLTDPNPDDPLV 85
PFKPP KVLLSICSLL DPNPDDPLV
Sbjct: 67 PFKPPKIAFTTKIYHPNINSNGSIKLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLV 126
Query: 86 PEIAHMYKSDKAKYESTARSWTQKYAM 112
P+IA +YKSDK KY AR WTQKYAM
Sbjct: 127 PDIAQIYKSDKEKYNRHAREWTQKYAM 153
>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating
Enzyme From Entamoeba Histolytica
Length = 151
Score = 144 bits (363), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 70/146 (47%), Positives = 91/146 (62%), Gaps = 35/146 (23%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDY 60
MA +RI KEL+++Q+DPP +CSAGPV +D+FHW ATI GP DSPY GG+F + +HFP DY
Sbjct: 4 MAMRRIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDY 63
Query: 61 PFKPP-----------------------------------KVLLSICSLLTDPNPDDPLV 85
PFK P +VLLSI SLLTDPNP DPL
Sbjct: 64 PFKAPRVTFMTKVYHPNINKNGVICLDILKDQWSPALTLSRVLLSISSLLTDPNPSDPLD 123
Query: 86 PEIAHMYKSDKAKYESTARSWTQKYA 111
PE+A++ +++K ++E TAR WT+ YA
Sbjct: 124 PEVANVLRANKKQFEDTAREWTRMYA 149
>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2
E1
Length = 194
Score = 122 bits (307), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 63/145 (43%), Positives = 84/145 (57%), Gaps = 35/145 (24%)
Query: 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYP 61
++KRI KEL D+ DPP +CSAGP ++++ W++TI+GP S Y GGVF + I F P+YP
Sbjct: 49 SAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYP 108
Query: 62 FKPP-----------------------------------KVLLSICSLLTDPNPDDPLVP 86
FKPP KVLLSICSLLTD NP DPLV
Sbjct: 109 FKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVG 168
Query: 87 EIAHMYKSDKAKYESTARSWTQKYA 111
IA Y +++A+++ AR WT++YA
Sbjct: 169 SIATQYMTNRAEHDRMARQWTKRYA 193
>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|B Chain B, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|C Chain C, Human Ubiquitin Conjugating Enzyme E2e2
Length = 149
Score = 122 bits (305), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 63/145 (43%), Positives = 84/145 (57%), Gaps = 35/145 (24%)
Query: 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYP 61
++KRI KEL ++ DPP +CSAGP ++++ W++TI+GP S Y GGVF + I F PDYP
Sbjct: 4 SAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYP 63
Query: 62 FKPP-----------------------------------KVLLSICSLLTDPNPDDPLVP 86
FKPP KVLLSICSLLTD NP DPLV
Sbjct: 64 FKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVG 123
Query: 87 EIAHMYKSDKAKYESTARSWTQKYA 111
IA Y +++A+++ AR WT++YA
Sbjct: 124 SIATQYMTNRAEHDRMARQWTKRYA 148
>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating
Enzyme From Plasmodium Yoelii
Length = 216
Score = 86.7 bits (213), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 65/145 (44%), Gaps = 36/145 (24%)
Query: 5 RILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKP 64
R+ KELKD++ + A + F W I GP +PY GG F + I P DYP+ P
Sbjct: 27 RLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNP 86
Query: 65 PKV------------------------------------LLSICSLLTDPNPDDPLVPEI 88
PK+ LLSI +LL+DP PDDP E+
Sbjct: 87 PKIKFVTKIWHPNISSQTGAICLDVLKNEWSPALTIRTALLSIQALLSDPQPDDPQDAEV 146
Query: 89 AHMYKSDKAKYESTARSWTQKYAMG 113
A MYK + A + TA WT+ +A G
Sbjct: 147 AKMYKENHALFVKTASVWTKTFATG 171
>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana
Length = 152
Score = 86.3 bits (212), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 64/146 (43%), Gaps = 40/146 (27%)
Query: 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYP 61
A KR++++ K LQ+DPP S P ++ W A I GP D+P+ GG F +++ F DYP
Sbjct: 5 ARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYP 64
Query: 62 FKPPKV-----------------------------------LLSICSLLTDPNPDDPLVP 86
KPP V L SI SLL DPNP+ P
Sbjct: 65 NKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANS 124
Query: 87 EIAHMYKSDKAKYESTAR-----SWT 107
E A MY K +Y R SWT
Sbjct: 125 EAARMYSESKREYNRRVRDVVEQSWT 150
>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|E Chain E, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|H Chain H, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|K Chain K, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 154
Score = 83.2 bits (204), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 69/145 (47%), Gaps = 35/145 (24%)
Query: 4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFK 63
+RI+KE + L +P A P + ++ I GP DSP+ GG F + + P +YP
Sbjct: 8 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 67
Query: 64 PPKV-----------------------------------LLSICSLLTDPNPDDPLVPEI 88
PKV LLSI +LL+ PNPDDPL ++
Sbjct: 68 APKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 127
Query: 89 AHMYKSDKAKYESTARSWTQKYAMG 113
A +K+++A+ TAR+WT+ YAM
Sbjct: 128 AEQWKTNEAQAIETARAWTRLYAMN 152
>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13
pdb|4DHI|D Chain D, Structure Of C. Elegans Otub1 Bound To Human Ubc13
pdb|4DHJ|C Chain C, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|K Chain K, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|G Chain G, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|N Chain N, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|F Chain F, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 152
Score = 83.2 bits (204), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 69/145 (47%), Gaps = 35/145 (24%)
Query: 4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFK 63
+RI+KE + L +P A P + ++ I GP DSP+ GG F + + P +YP
Sbjct: 6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 65
Query: 64 PPKV-----------------------------------LLSICSLLTDPNPDDPLVPEI 88
PKV LLSI +LL+ PNPDDPL ++
Sbjct: 66 APKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 125
Query: 89 AHMYKSDKAKYESTARSWTQKYAMG 113
A +K+++A+ TAR+WT+ YAM
Sbjct: 126 AEQWKTNEAQAIETARAWTRLYAMN 150
>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|D Chain D, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 155
Score = 82.8 bits (203), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 69/145 (47%), Gaps = 35/145 (24%)
Query: 4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFK 63
+RI+KE + L +P A P + ++ I GP DSP+ GG F + + P +YP
Sbjct: 9 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 68
Query: 64 PPKV-----------------------------------LLSICSLLTDPNPDDPLVPEI 88
PKV LLSI +LL+ PNPDDPL ++
Sbjct: 69 APKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 128
Query: 89 AHMYKSDKAKYESTARSWTQKYAMG 113
A +K+++A+ TAR+WT+ YAM
Sbjct: 129 AEQWKTNEAQAIETARAWTRLYAMN 153
>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
pdb|3E95|B Chain B, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 151
Score = 82.8 bits (203), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 65/143 (45%), Gaps = 35/143 (24%)
Query: 4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFK 63
+RI KE ++L +PP A PV E+ H+ I GP +PY GG + + + P YP +
Sbjct: 4 RRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPME 63
Query: 64 PPK-----------------------------------VLLSICSLLTDPNPDDPLVPEI 88
PPK VLLSI +LL+ P PDDPL ++
Sbjct: 64 PPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLDSKV 123
Query: 89 AHMYKSDKAKYESTARSWTQKYA 111
A +K DK E AR W + YA
Sbjct: 124 AEHFKQDKNDAEHVARQWNKIYA 146
>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating
Enzyme, Pfe1350c, From Plasmodium Falciparum
Length = 149
Score = 82.8 bits (203), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 65/143 (45%), Gaps = 35/143 (24%)
Query: 4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFK 63
+RI KE ++L +PP A PV E+ H+ I GP +PY GG + + + P YP +
Sbjct: 4 RRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPME 63
Query: 64 PPK-----------------------------------VLLSICSLLTDPNPDDPLVPEI 88
PPK VLLSI +LL+ P PDDPL ++
Sbjct: 64 PPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLDSKV 123
Query: 89 AHMYKSDKAKYESTARSWTQKYA 111
A +K DK E AR W + YA
Sbjct: 124 AEHFKQDKNDAEHVARQWNKIYA 146
>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|E Chain E, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|G Chain G, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|J Chain J, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|L Chain L, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|N Chain N, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Q Chain Q, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|S Chain S, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|U Chain U, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|X Chain X, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Z Chain Z, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|BB Chain b, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|EE Chain e, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|GG Chain g, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|II Chain i, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|LL Chain l, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|NN Chain n, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|PP Chain p, Crystalstructure Of The Ubiquitin Protease
Length = 148
Score = 82.8 bits (203), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 69/145 (47%), Gaps = 35/145 (24%)
Query: 4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFK 63
+RI+KE + L +P A P + ++ I GP DSP+ GG F + + P +YP
Sbjct: 4 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 63
Query: 64 PPKV-----------------------------------LLSICSLLTDPNPDDPLVPEI 88
PKV LLSI +LL+ PNPDDPL ++
Sbjct: 64 APKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 123
Query: 89 AHMYKSDKAKYESTARSWTQKYAMG 113
A +K+++A+ TAR+WT+ YAM
Sbjct: 124 AEQWKTNEAQAIETARAWTRLYAMN 148
>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|F Chain F, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|J Chain J, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 155
Score = 82.8 bits (203), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 69/145 (47%), Gaps = 35/145 (24%)
Query: 4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFK 63
+RI+KE + L +P A P + ++ I GP DSP+ GG F + + P +YP
Sbjct: 11 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 70
Query: 64 PPKV-----------------------------------LLSICSLLTDPNPDDPLVPEI 88
PKV LLSI +LL+ PNPDDPL ++
Sbjct: 71 APKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 130
Query: 89 AHMYKSDKAKYESTARSWTQKYAMG 113
A +K+++A+ TAR+WT+ YAM
Sbjct: 131 AEQWKTNEAQAIETARAWTRLYAMN 155
>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme,
Ubc1
Length = 215
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 70/146 (47%), Gaps = 37/146 (25%)
Query: 3 SKRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYP 61
+KRI+KE++ ++ DP + V+E D+ H + T +GP +PY GG F+V I P +YP
Sbjct: 4 AKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYP 63
Query: 62 FKPPKV------------------------------------LLSICSLLTDPNPDDPLV 85
FKPPK+ L+S+ +LL P P+DP
Sbjct: 64 FKPPKMQFDTKVYHPNISSVTGAICLDILRNAWSPVITLKSALISLQALLQSPEPNDPQD 123
Query: 86 PEIAHMYKSDKAKYESTARSWTQKYA 111
E+A Y D+ + TA WT+ YA
Sbjct: 124 AEVAQHYLRDRESFNKTAALWTRLYA 149
>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester
Complex
pdb|1FZY|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
pdb|1FZY|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
Length = 149
Score = 79.7 bits (195), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 70/146 (47%), Gaps = 37/146 (25%)
Query: 3 SKRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYP 61
+KRI+KE++ ++ DP + V+E D+ H + T +GP +PY GG F+V I P +YP
Sbjct: 3 AKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYP 62
Query: 62 FKPPKV------------------------------------LLSICSLLTDPNPDDPLV 85
FKPPK+ L+S+ +LL P P+DP
Sbjct: 63 FKPPKMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQD 122
Query: 86 PEIAHMYKSDKAKYESTARSWTQKYA 111
E+A Y D+ + TA WT+ YA
Sbjct: 123 AEVAQHYLRDRESFNKTAALWTRLYA 148
>pdb|1JAS|A Chain A, Hsubc2b
pdb|2YB6|A Chain A, Native Human Rad6
pdb|2YBF|A Chain A, Complex Of Rad18 (Rad6 Binding Domain) With Rad6b
pdb|2Y4W|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Rad6b
Length = 152
Score = 79.3 bits (194), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 60/134 (44%), Gaps = 35/134 (26%)
Query: 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYP 61
A +R++++ K LQ+DPP S P ++ W A I GP +P+ G F + I F +YP
Sbjct: 5 ARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYP 64
Query: 62 FKPPKV-----------------------------------LLSICSLLTDPNPDDPLVP 86
KPP V L SI SLL +PNP+ P
Sbjct: 65 NKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANS 124
Query: 87 EIAHMYKSDKAKYE 100
+ A +Y+ +K +YE
Sbjct: 125 QAAQLYQENKREYE 138
>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN
Length = 152
Score = 79.0 bits (193), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 72/148 (48%), Gaps = 37/148 (25%)
Query: 1 MAS--KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPP 58
MAS KRI+KE + L DP +A P +++ ++Q TI GP SPY G+F + ++ P
Sbjct: 1 MASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPD 60
Query: 59 DYPFKPPK-----------------------------------VLLSICSLLTDPNPDDP 83
DYP + PK VLLSI +LL PNP+DP
Sbjct: 61 DYPMEAPKVRFLTKIYHPNIDRLGRISLDVLKTNWSPALQIRTVLLSIQALLASPNPNDP 120
Query: 84 LVPEIAHMYKSDKAKYESTARSWTQKYA 111
L ++A + ++ ++ AR WT+ YA
Sbjct: 121 LANDVAEDWIKNEQGAKAKAREWTKLYA 148
>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a
Length = 153
Score = 78.6 bits (192), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 72/148 (48%), Gaps = 37/148 (25%)
Query: 1 MAS--KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPP 58
MAS KRI+KE + L DP +A P +++ ++Q TI GP SPY G+F + ++ P
Sbjct: 1 MASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPD 60
Query: 59 DYPFKPPK-----------------------------------VLLSICSLLTDPNPDDP 83
DYP + PK VLLSI +LL PNP+DP
Sbjct: 61 DYPMEAPKVRFLTKIYHPAIDRLGRISLDVLKTNWSPALQIRTVLLSIQALLASPNPNDP 120
Query: 84 LVPEIAHMYKSDKAKYESTARSWTQKYA 111
L ++A + ++ ++ AR WT+ YA
Sbjct: 121 LANDVAEDWIKNEQGAKAKAREWTKLYA 148
>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13
pdb|1JBB|B Chain B, Ubiquitin Conjugating Enzyme, Ubc13
Length = 153
Score = 78.6 bits (192), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 72/148 (48%), Gaps = 37/148 (25%)
Query: 1 MAS--KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPP 58
MAS KRI+KE + L DP +A P +++ ++Q TI GP SPY G+F + ++ P
Sbjct: 1 MASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPD 60
Query: 59 DYPFKPPK-----------------------------------VLLSICSLLTDPNPDDP 83
DYP + PK VLLSI +LL PNP+DP
Sbjct: 61 DYPMEAPKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDP 120
Query: 84 LVPEIAHMYKSDKAKYESTARSWTQKYA 111
L ++A + ++ ++ AR WT+ YA
Sbjct: 121 LANDVAEDWIKNEQGAKAKAREWTKLYA 148
>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 155
Score = 78.6 bits (192), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 69/143 (48%), Gaps = 35/143 (24%)
Query: 4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFK 63
KRI+KE + L DP +A P +++ ++Q TI GP SPY G+F + ++ P DYP +
Sbjct: 8 KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPME 67
Query: 64 PPK-----------------------------------VLLSICSLLTDPNPDDPLVPEI 88
PK VLLSI +LL PNP+DPL ++
Sbjct: 68 APKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDV 127
Query: 89 AHMYKSDKAKYESTARSWTQKYA 111
A + ++ ++ AR WT+ YA
Sbjct: 128 AEDWIKNEQGAKAKAREWTKLYA 150
>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces
Cerevisiae
Length = 165
Score = 77.4 bits (189), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 56/107 (52%), Gaps = 1/107 (0%)
Query: 2 ASKRILKELKDLQKDPPTSCSAGPVAED-MFHWQATIMGPSDSPYAGGVFLVTIHFPPDY 60
A KR+LKEL+ L KD P AGP +E+ +F W I GP D+PYA GVF + FP DY
Sbjct: 5 AQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDY 64
Query: 61 PFKPPKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWT 107
P PPK+ + L + P+ + I H D YE W+
Sbjct: 65 PLSPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWS 111
>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|C Chain C, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
Length = 170
Score = 77.4 bits (189), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 56/107 (52%), Gaps = 1/107 (0%)
Query: 2 ASKRILKELKDLQKDPPTSCSAGPV-AEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDY 60
A KR++ E K L +PP AGP+ E+ F W+A IMGP D+ + GVF + FP DY
Sbjct: 10 ALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDY 69
Query: 61 PFKPPKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWT 107
P PPK+ + + PD + I H D YES+A W+
Sbjct: 70 PLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWS 116
>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Ube2g2
Length = 167
Score = 77.0 bits (188), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 56/107 (52%), Gaps = 1/107 (0%)
Query: 2 ASKRILKELKDLQKDPPTSCSAGPV-AEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDY 60
A KR++ E K L +PP AGP+ E+ F W+A IMGP D+ + GVF + FP DY
Sbjct: 7 ALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDY 66
Query: 61 PFKPPKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWT 107
P PPK+ + + PD + I H D YES+A W+
Sbjct: 67 PLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWS 113
>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain
Of Gp78 At 1.8-A Resolution
Length = 164
Score = 77.0 bits (188), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 56/107 (52%), Gaps = 1/107 (0%)
Query: 2 ASKRILKELKDLQKDPPTSCSAGPV-AEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDY 60
A KR++ E K L +PP AGP+ E+ F W+A IMGP D+ + GVF + FP DY
Sbjct: 4 ALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDY 63
Query: 61 PFKPPKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWT 107
P PPK+ + + PD + I H D YES+A W+
Sbjct: 64 PLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWS 110
>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
pdb|3FSH|B Chain B, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
Length = 168
Score = 77.0 bits (188), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 56/107 (52%), Gaps = 1/107 (0%)
Query: 2 ASKRILKELKDLQKDPPTSCSAGPV-AEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDY 60
A KR++ E K L +PP AGP+ E+ F W+A IMGP D+ + GVF + FP DY
Sbjct: 8 ALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDY 67
Query: 61 PFKPPKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWT 107
P PPK+ + + PD + I H D YES+A W+
Sbjct: 68 PLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWS 114
>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|B Chain B, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|C Chain C, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 163
Score = 76.6 bits (187), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 66/143 (46%), Gaps = 35/143 (24%)
Query: 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYP 61
+ +R++++ K LQ+DPP S P +++ W+A I GP ++P+ G F +++ F +YP
Sbjct: 5 SRRRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYP 64
Query: 62 FKPPKV-----------------------------------LLSICSLLTDPNPDDPLVP 86
KPP V L SI SLL +PNP+ P
Sbjct: 65 NKPPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANS 124
Query: 87 EIAHMYKSDKAKYESTARSWTQK 109
A +Y+ ++ +YE + ++
Sbjct: 125 LAAQLYQENRREYEKRVQQIVEQ 147
>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a
Crystallographic Structure Of Ubiquitin-Conjugating
Enzyme (Ubc-1) From Caenorhabditis Elegans
Length = 157
Score = 76.6 bits (187), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 66/143 (46%), Gaps = 35/143 (24%)
Query: 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYP 61
+ +R++++ K LQ+DPP S P +++ W+A I GP ++P+ G F +++ F +YP
Sbjct: 8 SRRRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYP 67
Query: 62 FKPPKV-----------------------------------LLSICSLLTDPNPDDPLVP 86
KPP V L SI SLL +PNP+ P
Sbjct: 68 NKPPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANS 127
Query: 87 EIAHMYKSDKAKYESTARSWTQK 109
A +Y+ ++ +YE + ++
Sbjct: 128 LAAQLYQENRREYEKRVQQIVEQ 150
>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
Length = 169
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 67/145 (46%), Gaps = 40/145 (27%)
Query: 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYP 61
A +R++++ K +++D P SA P+ +++ W A I+GP+D+PY G F + + F +YP
Sbjct: 5 ARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYP 64
Query: 62 FKPPKV-----------------------------------LLSICSLLTDPNPDDPLVP 86
KPP V L SI SL DPNP P
Sbjct: 65 NKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANV 124
Query: 87 EIAHMYKSDKAKY-----ESTARSW 106
E A ++K K++Y E+ +SW
Sbjct: 125 EAATLFKDHKSQYVKRVKETVEKSW 149
>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
pdb|2F4Z|B Chain B, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
Length = 193
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 67/156 (42%), Gaps = 49/156 (31%)
Query: 5 RILKELKDLQK-------DPPTS------CSAGPVAEDMFHWQATIMGPSDSPYAGGVFL 51
R+LKEL D+Q+ +P + SA V D+ W+ I GP +PY GG F
Sbjct: 36 RLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFT 95
Query: 52 VTIHFPPDYPFKPPKV------------------------------------LLSICSLL 75
+ I PPDYP+ PPK+ LLSI ++L
Sbjct: 96 LDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQAML 155
Query: 76 TDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 111
DP P DP E+A M + + TA+ WT+ +A
Sbjct: 156 ADPVPTDPQDAEVAKMMIENHPLFVQTAKLWTETFA 191
>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1FBV|C Chain C, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 154
Score = 69.3 bits (168), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 69/147 (46%), Gaps = 38/147 (25%)
Query: 2 ASKRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPSDSPYAGGVFLVTIHFPPDY 60
AS+R++KEL++++K + V E ++ WQ I+ P + PY G F + I+FP +Y
Sbjct: 3 ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEY 61
Query: 61 PFKPPK------------------------------------VLLSICSLLTDPNPDDPL 84
PFKPPK V+ S+ +L+ DP P+ PL
Sbjct: 62 PFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPL 121
Query: 85 VPEIAHMYKSDKAKYESTARSWTQKYA 111
++A Y D+ K+ A +T+KY
Sbjct: 122 RADLAEEYSKDRKKFCKNAEEFTKKYG 148
>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SQV|D Chain D, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SY2|C Chain C, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|D Chain D, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 156
Score = 69.3 bits (168), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 69/147 (46%), Gaps = 38/147 (25%)
Query: 2 ASKRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPSDSPYAGGVFLVTIHFPPDY 60
AS+R++KEL++++K + V E ++ WQ I+ P + PY G F + I+FP +Y
Sbjct: 5 ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEY 63
Query: 61 PFKPPK------------------------------------VLLSICSLLTDPNPDDPL 84
PFKPPK V+ S+ +L+ DP P+ PL
Sbjct: 64 PFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPL 123
Query: 85 VPEIAHMYKSDKAKYESTARSWTQKYA 111
++A Y D+ K+ A +T+KY
Sbjct: 124 RADLAEEYSKDRKKFCKNAEEFTKKYG 150
>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150
Length = 169
Score = 68.6 bits (166), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 68/148 (45%), Gaps = 39/148 (26%)
Query: 3 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPF 62
+ R+ +EL L +PP + + M +A I+G +++PY GVF + + P YPF
Sbjct: 6 ASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPF 65
Query: 63 KPPK---------------------------------------VLLSICSLLTDPNPDDP 83
+PP+ VL SI L+++PNPDDP
Sbjct: 66 EPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDP 125
Query: 84 LVPEIAHMYKSDKAKYESTARSWTQKYA 111
L+ +I+ +K +K + AR WT+K+A
Sbjct: 126 LMADISSEFKYNKPAFLKNARQWTEKHA 153
>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1
Length = 172
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 55/108 (50%), Gaps = 5/108 (4%)
Query: 2 ASKRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPSDSPYAGGVFLVTIHFPPDY 60
S + ++L +L K+P SAG + + D++ W+ I+GP D+ Y GGVF + FP DY
Sbjct: 18 GSLLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDY 77
Query: 61 PFKPPKV--LLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSW 106
P +PPK+ + I D N D + I H DK YE W
Sbjct: 78 PLRPPKMKFITEIWHPNVDKNGD--VCISILHEPGEDKYGYEKPEERW 123
>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s
pdb|1ZDN|B Chain B, Ubiquitin-Conjugating Enzyme E2s
Length = 158
Score = 62.0 bits (149), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 57/143 (39%), Gaps = 35/143 (24%)
Query: 4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFK 63
+ + KE+ L DPP P ED+ Q TI GP +PYAGG+F + + D+P
Sbjct: 16 RLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPAS 75
Query: 64 PPK-----------------------------------VLLSICSLLTDPNPDDPLVPEI 88
PPK VLL+I LL PNP+ L E
Sbjct: 76 PPKGYFLTKIFHPNVGANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEA 135
Query: 89 AHMYKSDKAKYESTARSWTQKYA 111
+ + +Y + AR T+ +
Sbjct: 136 GRLLLENYEEYAARARLLTEIHG 158
>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 164
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 52/102 (50%), Gaps = 5/102 (4%)
Query: 8 KELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPK 66
K+L D+++ P SAG V + D++ W+ ++GP D+ Y GG F + FP DYP KPPK
Sbjct: 10 KQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPK 69
Query: 67 VLLSICSLLTDPNPDDP--LVPEIAHMYKSDKAKYESTARSW 106
+ S + PN D + I H DK YE W
Sbjct: 70 --MKFISEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERW 109
>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k
pdb|2BF8|A Chain A, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 159
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 61/150 (40%), Gaps = 39/150 (26%)
Query: 1 MASKRILKELKDLQKDPPTS---CSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFP 57
+A +RI +E K++ K TS V E+ + I GP D+PY GG + + I P
Sbjct: 8 IAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIP 67
Query: 58 PDYPFKPPKVLL--------------SIC-SLLTDP---------------------NPD 81
YPF PPKV +IC +L D PD
Sbjct: 68 ETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPD 127
Query: 82 DPLVPEIAHMYKSDKAKYESTARSWTQKYA 111
DP +A+ YK + ++ TAR W YA
Sbjct: 128 DPQDAVVANQYKQNPEMFKQTARLWAHVYA 157
>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex
Length = 217
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 61/150 (40%), Gaps = 39/150 (26%)
Query: 1 MASKRILKELKDLQKDPPTS---CSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFP 57
+A +RI +E K++ K TS V E+ + I GP D+PY GG + + I P
Sbjct: 21 IAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIP 80
Query: 58 PDYPFKPPKVLL--------------SIC-SLLTDP---------------------NPD 81
YPF PPKV +IC +L D PD
Sbjct: 81 ETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPD 140
Query: 82 DPLVPEIAHMYKSDKAKYESTARSWTQKYA 111
DP +A+ YK + ++ TAR W YA
Sbjct: 141 DPQDAVVANQYKQNPEMFKQTARLWAHVYA 170
>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 201
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 61/150 (40%), Gaps = 39/150 (26%)
Query: 1 MASKRILKELKDLQKDPPTS---CSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFP 57
+A +RI +E K++ K TS V E+ + I GP D+PY GG + + I P
Sbjct: 5 IAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIP 64
Query: 58 PDYPFKPPKVLL--------------SIC-SLLTDP---------------------NPD 81
YPF PPKV +IC +L D PD
Sbjct: 65 ETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPD 124
Query: 82 DPLVPEIAHMYKSDKAKYESTARSWTQKYA 111
DP +A+ YK + ++ TAR W YA
Sbjct: 125 DPQDAVVANQYKQNPEMFKQTARLWAHVYA 154
>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
pdb|3F92|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
Crystallized At Ph 8.5
Length = 253
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 61/150 (40%), Gaps = 39/150 (26%)
Query: 1 MASKRILKELKDLQKDPPTS---CSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFP 57
+A +RI +E K++ K TS V E+ + I GP D+PY GG + + I P
Sbjct: 57 IAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIP 116
Query: 58 PDYPFKPPKVLL--------------SIC-SLLTDP---------------------NPD 81
YPF PPKV +IC +L D PD
Sbjct: 117 ETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPD 176
Query: 82 DPLVPEIAHMYKSDKAKYESTARSWTQKYA 111
DP +A+ YK + ++ TAR W YA
Sbjct: 177 DPQDAVVANQYKQNPEMFKQTARLWAHVYA 206
>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|1YLA|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|2O25|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
Length = 202
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 61/150 (40%), Gaps = 39/150 (26%)
Query: 1 MASKRILKELKDLQKDPPTS---CSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFP 57
+A +RI +E K++ K TS V E+ + I GP D+PY GG + + I P
Sbjct: 6 IAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIP 65
Query: 58 PDYPFKPPKVLL--------------SIC-SLLTDP---------------------NPD 81
YPF PPKV +IC +L D PD
Sbjct: 66 ETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPD 125
Query: 82 DPLVPEIAHMYKSDKAKYESTARSWTQKYA 111
DP +A+ YK + ++ TAR W YA
Sbjct: 126 DPQDAVVANQYKQNPEMFKQTARLWAHVYA 155
>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The
Destruction Of Mitotic Cyclins
Length = 156
Score = 58.9 bits (141), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 61/134 (45%), Gaps = 36/134 (26%)
Query: 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYP 61
SKR+ +EL+ L +A P +++F W AT+ GP D+ Y + +T+ FP DYP
Sbjct: 10 VSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYP 69
Query: 62 FKPP-----------------------------------KVLLSICSLLTDPNPDDPLVP 86
+KPP +LLS+ SLL +PN PL
Sbjct: 70 YKPPVVKFTTPCWHPNVDQSGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNA 129
Query: 87 EIAHMYKSDKAKYE 100
+ A M+ S++ +Y+
Sbjct: 130 QAADMW-SNQTEYK 142
>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
pdb|3UIP|A Chain A, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 158
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 61/153 (39%), Gaps = 42/153 (27%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAE-----DMFHWQATIMGPSDSPYAGGVFLVTIH 55
+A R+ +E K +KD P A P ++ +W+ I G +P+ GG+F + +
Sbjct: 4 IALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRML 63
Query: 56 FPPDYPFKPPK-------------------------------------VLLSICSLLTDP 78
F DYP PPK +LL I LL +P
Sbjct: 64 FKDDYPSSPPKCKFEPPLFHPNVYPSGTVXLSILEEDKDWRPAITIKQILLGIQELLNEP 123
Query: 79 NPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 111
N DP E +Y ++ +YE R+ +K+A
Sbjct: 124 NIQDPAQAEAYTIYXQNRVEYEKRVRAQAKKFA 156
>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
pdb|1KPS|C Chain C, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
Length = 159
Score = 55.8 bits (133), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 61/153 (39%), Gaps = 42/153 (27%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAE-----DMFHWQATIMGPSDSPYAGGVFLVTIH 55
+A R+ +E K +KD P A P ++ +W+ I G +P+ GG+F + +
Sbjct: 5 IALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRML 64
Query: 56 FPPDYPFKPPK-------------------------------------VLLSICSLLTDP 78
F DYP PPK +LL I LL +P
Sbjct: 65 FKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEP 124
Query: 79 NPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 111
N DP E +Y ++ +YE R+ +K+A
Sbjct: 125 NIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 157
>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q
Length = 161
Score = 55.8 bits (133), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 61/153 (39%), Gaps = 42/153 (27%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAE-----DMFHWQATIMGPSDSPYAGGVFLVTIH 55
+A R+ +E K +KD P A P ++ +W+ I G +P+ GG+F + +
Sbjct: 7 IALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRML 66
Query: 56 FPPDYPFKPPK-------------------------------------VLLSICSLLTDP 78
F DYP PPK +LL I LL +P
Sbjct: 67 FKDDYPSSPPKCKFEPPLFHPQVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEP 126
Query: 79 NPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 111
N DP E +Y ++ +YE R+ +K+A
Sbjct: 127 NIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 159
>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9
pdb|2PE6|A Chain A, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
Length = 161
Score = 55.8 bits (133), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 61/153 (39%), Gaps = 42/153 (27%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAE-----DMFHWQATIMGPSDSPYAGGVFLVTIH 55
+A R+ +E K +KD P A P ++ +W+ I G +P+ GG+F + +
Sbjct: 7 IALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRML 66
Query: 56 FPPDYPFKPPK-------------------------------------VLLSICSLLTDP 78
F DYP PPK +LL I LL +P
Sbjct: 67 FKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEP 126
Query: 79 NPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 111
N DP E +Y ++ +YE R+ +K+A
Sbjct: 127 NIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 159
>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|D Chain D, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|1A3S|A Chain A, Human Ubc9
Length = 160
Score = 55.8 bits (133), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 61/153 (39%), Gaps = 42/153 (27%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAE-----DMFHWQATIMGPSDSPYAGGVFLVTIH 55
+A R+ +E K +KD P A P ++ +W+ I G +P+ GG+F + +
Sbjct: 6 IALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRML 65
Query: 56 FPPDYPFKPPK-------------------------------------VLLSICSLLTDP 78
F DYP PPK +LL I LL +P
Sbjct: 66 FKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEP 125
Query: 79 NPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 111
N DP E +Y ++ +YE R+ +K+A
Sbjct: 126 NIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 158
>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2PX9|B Chain B, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
pdb|2VRR|A Chain A, Structure Of Sumo Modified Ubc9
pdb|2XWU|A Chain A, Crystal Structure Of Importin 13 - Ubc9 Complex
pdb|3UIN|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
Length = 158
Score = 55.8 bits (133), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 61/153 (39%), Gaps = 42/153 (27%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAE-----DMFHWQATIMGPSDSPYAGGVFLVTIH 55
+A R+ +E K +KD P A P ++ +W+ I G +P+ GG+F + +
Sbjct: 4 IALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRML 63
Query: 56 FPPDYPFKPPK-------------------------------------VLLSICSLLTDP 78
F DYP PPK +LL I LL +P
Sbjct: 64 FKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEP 123
Query: 79 NPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 111
N DP E +Y ++ +YE R+ +K+A
Sbjct: 124 NIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 156
>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex
pdb|3A4S|B Chain B, The Crystal Structure Of The Sld2:ubc9 Complex
Length = 163
Score = 55.8 bits (133), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 61/153 (39%), Gaps = 42/153 (27%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAE-----DMFHWQATIMGPSDSPYAGGVFLVTIH 55
+A R+ +E K +KD P A P ++ +W+ I G +P+ GG+F + +
Sbjct: 9 IALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRML 68
Query: 56 FPPDYPFKPPK-------------------------------------VLLSICSLLTDP 78
F DYP PPK +LL I LL +P
Sbjct: 69 FKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEP 128
Query: 79 NPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 111
N DP E +Y ++ +YE R+ +K+A
Sbjct: 129 NIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 161
>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9
pdb|1U9B|A Chain A, MurineHUMAN UBIQUITIN-Conjugating Enzyme Ubc9
Length = 160
Score = 55.8 bits (133), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 61/153 (39%), Gaps = 42/153 (27%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAE-----DMFHWQATIMGPSDSPYAGGVFLVTIH 55
+A R+ +E K +KD P A P ++ +W+ I G +P+ GG+F + +
Sbjct: 6 IALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRML 65
Query: 56 FPPDYPFKPPK-------------------------------------VLLSICSLLTDP 78
F DYP PPK +LL I LL +P
Sbjct: 66 FKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEP 125
Query: 79 NPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 111
N DP E +Y ++ +YE R+ +K+A
Sbjct: 126 NIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 158
>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1
Length = 158
Score = 55.8 bits (133), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 61/153 (39%), Gaps = 42/153 (27%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAE-----DMFHWQATIMGPSDSPYAGGVFLVTIH 55
+A R+ +E K +KD P A P ++ +W+ I G +P+ GG+F + +
Sbjct: 4 IALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRML 63
Query: 56 FPPDYPFKPPK-------------------------------------VLLSICSLLTDP 78
F DYP PPK +LL I LL +P
Sbjct: 64 FKDDYPSSPPKCKFEPPLFHPNVYPSGTVSLSILEEDKDWRPAITIKQILLGIQELLNEP 123
Query: 79 NPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 111
N DP E +Y ++ +YE R+ +K+A
Sbjct: 124 NIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 156
>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a
Length = 161
Score = 55.8 bits (133), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 61/153 (39%), Gaps = 42/153 (27%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAE-----DMFHWQATIMGPSDSPYAGGVFLVTIH 55
+A R+ +E K +KD P A P ++ +W+ I G +P+ GG+F + +
Sbjct: 7 IALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRML 66
Query: 56 FPPDYPFKPPK-------------------------------------VLLSICSLLTDP 78
F DYP PPK +LL I LL +P
Sbjct: 67 FKDDYPSSPPKCKFEPPLFHPNVAPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEP 126
Query: 79 NPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 111
N DP E +Y ++ +YE R+ +K+A
Sbjct: 127 NIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 159
>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex
Length = 163
Score = 55.5 bits (132), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 61/153 (39%), Gaps = 42/153 (27%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAE-----DMFHWQATIMGPSDSPYAGGVFLVTIH 55
+ R+ +E K ++D P A P D+ +W+ I G + + GG++ +T+
Sbjct: 10 LCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMA 69
Query: 56 FPPDYPFKPPK-------------------------------------VLLSICSLLTDP 78
FP +YP +PPK +LL I LL DP
Sbjct: 70 FPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLLDDP 129
Query: 79 NPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 111
N P E M+K DK +YE R+ ++ A
Sbjct: 130 NIASPAQTEAYTMFKKDKVEYEKRVRAQARENA 162
>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|B Chain B, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|C Chain C, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|D Chain D, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
Length = 183
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 2 ASKRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPSDSPYAGGVFLVTIHFPPDY 60
+ K +L ELK LQ++P V E D+++W+ I GP ++ Y GG F + FP DY
Sbjct: 8 SQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDY 67
Query: 61 PFKPP 65
P+ PP
Sbjct: 68 PYSPP 72
>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34
Length = 180
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 2 ASKRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPSDSPYAGGVFLVTIHFPPDY 60
+ K +L ELK LQ++P V E D+++W+ I GP ++ Y GG F + FP DY
Sbjct: 5 SQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDY 64
Query: 61 PFKPP 65
P+ PP
Sbjct: 65 PYSPP 69
>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8
pdb|1WZV|B Chain B, Crystal Structure Of Ubch8
pdb|1WZW|A Chain A, Crystal Structure Of Ubch8
Length = 155
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 4/83 (4%)
Query: 1 MASKRILKELKDLQKDPPTSC-SAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPD 59
MAS R++KEL+DLQK PP + ++ W A ++ P PY F + I FPP+
Sbjct: 4 MASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPE 62
Query: 60 YPFKPPKVLLSICSLLTDPNPDD 82
YPFKPP ++ + + PN D+
Sbjct: 63 YPFKPP--MIKFTTKIYHPNVDE 83
>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin
Complex
Length = 152
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 4/83 (4%)
Query: 1 MASKRILKELKDLQKDPPTSC-SAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPD 59
MAS R++KEL+DLQK PP + ++ W A ++ P PY F + I FPP+
Sbjct: 1 MASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPE 59
Query: 60 YPFKPPKVLLSICSLLTDPNPDD 82
YPFKPP ++ + + PN D+
Sbjct: 60 YPFKPP--MIKFTTKIYHPNVDE 80
>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s
Length = 161
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 60/153 (39%), Gaps = 42/153 (27%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAE-----DMFHWQATIMGPSDSPYAGGVFLVTIH 55
+A R+ +E K +KD P A P ++ +W+ I G +P+ GG+F + +
Sbjct: 7 IALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRML 66
Query: 56 FPPDYPFKPPK-------------------------------------VLLSICSLLTDP 78
F DYP PPK +LL I LL +P
Sbjct: 67 FKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEP 126
Query: 79 NPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 111
N P E +Y ++ +YE R+ +K+A
Sbjct: 127 NIQSPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 159
>pdb|2F4W|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 J2
pdb|2F4W|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 J2
Length = 187
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 11/91 (12%)
Query: 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYP 61
A++R+ ++ ++KDP A P+ ++ W + GP +PY GG + + FP ++P
Sbjct: 15 ATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFP 74
Query: 62 FKPPKVLL-----------SICSLLTDPNPD 81
FKPP + + +C +TD +PD
Sbjct: 75 FKPPSIYMITPNGRFKCNTRLCLSITDFHPD 105
>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme
Length = 169
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 60/139 (43%), Gaps = 38/139 (27%)
Query: 8 KELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPP-- 65
++ DL+++ +A PV+EDM W+ I G +S + G VF +TIHF +Y + PP
Sbjct: 30 RDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVV 89
Query: 66 ------------------------------------KVLLSICSLLTDPNPDDPLVPEIA 89
+LL++ +L++P ++P+ E A
Sbjct: 90 KFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAA 149
Query: 90 HMYKSDKAKYESTARSWTQ 108
+ D++ Y + R + +
Sbjct: 150 RILVKDESLYRTILRLFNR 168
>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
pdb|3ONG|D Chain D, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
Length = 159
Score = 53.1 bits (126), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 62/150 (41%), Gaps = 42/150 (28%)
Query: 4 KRILKELKDLQKDPPTSCSAGPVAE-----DMFHWQATIMGPSDSPYAGGVFLVTIHFPP 58
+R+ +E K +KD P A PV + D+ W+A I G + +AGGV+ +T+ +P
Sbjct: 9 QRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPN 68
Query: 59 DYPFKPPKV-------------------------------------LLSICSLLTDPNPD 81
+YP KPPKV +L + LL PNP+
Sbjct: 69 EYPSKPPKVKFPAGFYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPN 128
Query: 82 DPLVPEIAHMYKSDKAKYESTARSWTQKYA 111
P + +KA+Y+ ++Y+
Sbjct: 129 SPAQEPAWRSFSRNKAEYDKKVLLQAKQYS 158
>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|B Chain B, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|C Chain C, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|D Chain D, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2EKE|A Chain A, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|B Chain B, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 157
Score = 53.1 bits (126), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 62/150 (41%), Gaps = 42/150 (28%)
Query: 4 KRILKELKDLQKDPPTSCSAGPVAE-----DMFHWQATIMGPSDSPYAGGVFLVTIHFPP 58
+R+ +E K +KD P A PV + D+ W+A I G + +AGGV+ +T+ +P
Sbjct: 7 QRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPN 66
Query: 59 DYPFKPPKV-------------------------------------LLSICSLLTDPNPD 81
+YP KPPKV +L + LL PNP+
Sbjct: 67 EYPSKPPKVKFPAGFYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPN 126
Query: 82 DPLVPEIAHMYKSDKAKYESTARSWTQKYA 111
P + +KA+Y+ ++Y+
Sbjct: 127 SPAQEPAWRSFSRNKAEYDKKVLLQAKQYS 156
>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a
Length = 161
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 60/153 (39%), Gaps = 42/153 (27%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAE-----DMFHWQATIMGPSDSPYAGGVFLVTIH 55
+A R+ +E K +KD P A P ++ +W+ I G +P+ GG+F + +
Sbjct: 7 IALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRML 66
Query: 56 FPPDYPFKPPK-------------------------------------VLLSICSLLTDP 78
F DYP PPK +LL I LL +P
Sbjct: 67 FKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEP 126
Query: 79 NPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 111
N P E +Y ++ +YE R+ +K+A
Sbjct: 127 NIQAPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 159
>pdb|2H2Y|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2
From Plasmodium Falciparum
pdb|2H2Y|B Chain B, Crystal Structure Of Ubiquitin Conjugating Enzyme E2
From Plasmodium Falciparum
pdb|2H2Y|C Chain C, Crystal Structure Of Ubiquitin Conjugating Enzyme E2
From Plasmodium Falciparum
pdb|2H2Y|D Chain D, Crystal Structure Of Ubiquitin Conjugating Enzyme E2
From Plasmodium Falciparum
Length = 136
Score = 52.0 bits (123), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 37/66 (56%)
Query: 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYP 61
A+ RI KEL + K+PP +C+ ++ W +G ++ YA V+ + I FP +YP
Sbjct: 21 ANYRIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYP 80
Query: 62 FKPPKV 67
KPP V
Sbjct: 81 LKPPIV 86
>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2
Length = 125
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 36/66 (54%)
Query: 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYP 61
A+ RI KEL + +PP +C+ ++ W +G ++ YA V+ + I FP DYP
Sbjct: 7 ANYRIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYP 66
Query: 62 FKPPKV 67
KPP V
Sbjct: 67 LKPPIV 72
>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
pdb|1I7K|B Chain B, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
Length = 179
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 51/127 (40%), Gaps = 35/127 (27%)
Query: 3 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPF 62
KR+ +EL L SA P ++++F W TI G + + Y + +++ FP YP+
Sbjct: 32 GKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPY 91
Query: 63 KPPKV-----------------------------------LLSICSLLTDPNPDDPLVPE 87
P V LLSI SLL +PN D PL
Sbjct: 92 NAPTVKFLTPCYHPNVDTQGNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTH 151
Query: 88 IAHMYKS 94
A ++K+
Sbjct: 152 AAELWKN 158
>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure
Length = 172
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 38/75 (50%), Gaps = 12/75 (16%)
Query: 5 RILKE----LKDLQKDPPTSC-------SAGPVAE-DMFHWQATIMGPSDSPYAGGVFLV 52
RI+KE LK L D P + S P+ E D+ W+A I GPSD+PY F +
Sbjct: 10 RIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRI 69
Query: 53 TIHFPPDYPFKPPKV 67
I P YP PPK+
Sbjct: 70 LIEVPSSYPMNPPKI 84
>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure
Length = 172
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 38/75 (50%), Gaps = 12/75 (16%)
Query: 5 RILKE----LKDLQKDPPTSC-------SAGPVAE-DMFHWQATIMGPSDSPYAGGVFLV 52
RI+KE LK L D P + S P+ E D+ W+A I GPSD+PY F +
Sbjct: 10 RIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRI 69
Query: 53 TIHFPPDYPFKPPKV 67
I P YP PPK+
Sbjct: 70 LIEVPSSYPMNPPKI 84
>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure
Length = 172
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 38/75 (50%), Gaps = 12/75 (16%)
Query: 5 RILKE----LKDLQKDPPTSC-------SAGPVAE-DMFHWQATIMGPSDSPYAGGVFLV 52
RI+KE LK L D P + S P+ E D+ W+A I GPSD+PY F +
Sbjct: 10 RIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRI 69
Query: 53 TIHFPPDYPFKPPKV 67
I P YP PPK+
Sbjct: 70 LIEVPSSYPMNPPKI 84
>pdb|2GMI|B Chain B, Mms2UBC13~UBIQUITIN
Length = 137
Score = 46.2 bits (108), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 48/112 (42%), Gaps = 15/112 (13%)
Query: 5 RILKELKDLQKD-PPTSCSAGPVAED---MFHWQATIMGPSDSPYAGGVFLVTIHFPPDY 60
R+L+EL+ +K P SCS G D M W TI+GP S + ++ ++I P+Y
Sbjct: 9 RLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNY 68
Query: 61 PFKPPKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAM 112
P PPKV L NP V H T R W + Y M
Sbjct: 69 PDSPPKVTFISKINLPCVNPTTGEVQTDFH-----------TLRDWKRAYTM 109
>pdb|1JAT|B Chain B, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 138
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 48/112 (42%), Gaps = 15/112 (13%)
Query: 5 RILKELKDLQKD-PPTSCSAGPVAED---MFHWQATIMGPSDSPYAGGVFLVTIHFPPDY 60
R+L+EL+ +K P SCS G D M W TI+GP S + ++ ++I P+Y
Sbjct: 10 RLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNY 69
Query: 61 PFKPPKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAM 112
P PPKV L NP V H T R W + Y M
Sbjct: 70 PDSPPKVTFISKINLPCVNPTTGEVQTDFH-----------TLRDWKRAYTM 110
>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme
Pf10_0330, Putative Homologue Of Human Ube2h
Length = 152
Score = 45.4 bits (106), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 47/119 (39%), Gaps = 43/119 (36%)
Query: 30 MFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKV-----LL---------SIC--- 72
MFH GP+ + Y GG++ V + P DYPF P + LL S+C
Sbjct: 34 MFH------GPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEASGSVCLDV 87
Query: 73 --------------------SLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 111
LLT PNP DPL + A + DK YE + + + YA
Sbjct: 88 INQTWTPLYSLVNVFEVFLPQLLTYPNPSDPLNSDAASLLMKDKNIYEEKVKEYVKLYA 146
>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H
pdb|2Z5D|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 H
Length = 179
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 42/110 (38%), Gaps = 37/110 (33%)
Query: 39 GPSDSPYAGGVFLVTIHFPPDYPFKPPKVLL--------------SIC------------ 72
GP +PY GGV+ V + P YPFK P + ++C
Sbjct: 59 GPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALY 118
Query: 73 -----------SLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 111
LL PNP DPL + A MY +Y+ + + QKYA
Sbjct: 119 DLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYA 168
>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|B Chain B, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|C Chain C, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
Length = 171
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 42/110 (38%), Gaps = 37/110 (33%)
Query: 39 GPSDSPYAGGVFLVTIHFPPDYPFKPPKVLL--------------SIC------------ 72
GP +PY G +++ + P DYPFK P + S+C
Sbjct: 46 GPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSVCLDVINQTWTPMY 105
Query: 73 -----------SLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 111
LL PNP DPL + AH+ +D+ +++ R +A
Sbjct: 106 QLENIFDVFLPQLLRYPNPSDPLNVQAAHLLHADRVGFDALLREHVSTHA 155
>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
pdb|3CEG|B Chain B, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
Length = 323
Score = 43.1 bits (100), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 37 IMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVLLSIC---SLLTDPN 79
I GP+D+PYA G F ++FP DYP PP V L S+ +PN
Sbjct: 116 ITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPN 161
>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical
Ubiquitin-Conjugating Enzyme, Loc55284
pdb|2A7L|B Chain B, Structure Of The Human Hypothetical
Ubiquitin-Conjugating Enzyme, Loc55284
Length = 136
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 1 MAS--KRILKELKDLQKDPP--TSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHF 56
MAS KR+ KEL LQ DPP + + V + W + G + Y G F + F
Sbjct: 20 MASMQKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKF 79
Query: 57 PPDYPFKPPKVLLS 70
YPF P+V+ +
Sbjct: 80 SSRYPFDSPQVMFT 93
>pdb|4DS2|A Chain A, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
pdb|4DS2|B Chain B, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
Length = 167
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 14/81 (17%)
Query: 1 MASKRILKELK------DLQKDPPTSCSAGPVA------EDMFHWQATIMGPSDSPY--A 46
+++KRI+K+LK D + +S S A + +++W + P+DS Y A
Sbjct: 8 ISNKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPADSVYGGA 67
Query: 47 GGVFLVTIHFPPDYPFKPPKV 67
G + +++ F DYP +PP V
Sbjct: 68 GNTYQLSVLFSDDYPHEPPTV 88
>pdb|3FN1|B Chain B, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity
To Cullin Modification
Length = 167
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 52/153 (33%), Gaps = 42/153 (27%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDY 60
+ K ++KE+ +L+ + P +C + H + P + Y GG F P Y
Sbjct: 14 VRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAY 73
Query: 61 PFKPPKVLL-------------SIC----------------------------SLLTD-P 78
PPKV IC SL TD
Sbjct: 74 NMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLL 133
Query: 79 NPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 111
N DDPL E A + DK + + + ++YA
Sbjct: 134 NFDDPLNIEAAEHHLRDKEDFRNKVDDYIKRYA 166
>pdb|2EDI|A Chain A, Solution Structure Of The Uq_con Domain From Human Nedd8-
Conjugating Enzyme Nce2
Length = 173
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 52/153 (33%), Gaps = 42/153 (27%)
Query: 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDY 60
+ K ++KE+ +L+ + P +C + H + P + Y GG F P Y
Sbjct: 14 VRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAY 73
Query: 61 PFKPPKVLL-------------SIC----------------------------SLLTD-P 78
PPKV IC SL TD
Sbjct: 74 NMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLL 133
Query: 79 NPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 111
N DDPL E A + DK + + + ++YA
Sbjct: 134 NFDDPLNIEAAEHHLRDKEDFRNKVDDYIKRYA 166
>pdb|2NVU|C Chain C, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 180
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 59/148 (39%), Gaps = 39/148 (26%)
Query: 2 ASKRILKELKDLQKDPPTSCSAGPVA-EDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDY 60
A RI K++ +L + P +C +D+ +++ I P + Y G F+ + Y
Sbjct: 27 AQLRIQKDINEL--NLPKTCDISFSDPDDLLNFKLVIC-PDEGFYKSGKFVFSFKVGQGY 83
Query: 61 PFKPPKV----------------------------LLSICS-------LLTDPNPDDPLV 85
P PPKV +L+I S L +PNP+DPL
Sbjct: 84 PHDPPKVKCETMVYHPNIDLEGNVALNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLN 143
Query: 86 PEIAHMYKSDKAKYESTARSWTQKYAMG 113
E A + ++++ +E + + +G
Sbjct: 144 KEAAEVLQNNRRLFEQNVQRSMRGGYIG 171
>pdb|1ZGU|A Chain A, Solution Structure Of The Human Mms2-Ubiquitin Complex
Length = 139
Score = 34.7 bits (78), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 5 RILKELKDLQKDPPTSCSAGPVAED----MFHWQATIMGPSDSPYAGGVFLVTIHFPPDY 60
R+L+EL++ QK + + +D + W I+GP + Y ++ + + P Y
Sbjct: 8 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKY 67
Query: 61 PFKPPKV 67
P PP V
Sbjct: 68 PEAPPSV 74
>pdb|1J74|A Chain A, Crystal Structure Of Mms2
pdb|1J7D|A Chain A, Crystal Structure Of Hmms2-Hubc13
Length = 145
Score = 34.7 bits (78), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 5 RILKELKDLQKDPPTSCSAGPVAED----MFHWQATIMGPSDSPYAGGVFLVTIHFPPDY 60
R+L+EL++ QK + + +D + W I+GP + Y ++ + + P Y
Sbjct: 14 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKY 73
Query: 61 PFKPPKV 67
P PP V
Sbjct: 74 PEAPPSV 80
>pdb|1Y8X|A Chain A, Structural Basis For Recruitment Of Ubc12 By An E2-Binding
Domain In Nedd8's E1
Length = 160
Score = 34.7 bits (78), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 59/148 (39%), Gaps = 39/148 (26%)
Query: 2 ASKRILKELKDLQKDPPTSCSAGPVA-EDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDY 60
A RI K++ +L + P +C +D+ +++ I P + Y G F+ + Y
Sbjct: 7 AQLRIQKDINEL--NLPKTCDISFSDPDDLLNFKLVIC-PDEGFYKSGKFVFSFKVGQGY 63
Query: 61 PFKPPKV----------------------------LLSICS-------LLTDPNPDDPLV 85
P PPKV +L+I S L +PNP+DPL
Sbjct: 64 PHDPPKVKCETXVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLN 123
Query: 86 PEIAHMYKSDKAKYESTARSWTQKYAMG 113
E A + ++++ +E + + +G
Sbjct: 124 KEAAEVLQNNRRLFEQNVQRSXRGGYIG 151
>pdb|3VON|B Chain B, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|D Chain D, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|F Chain F, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|I Chain I, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|K Chain K, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|M Chain M, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|P Chain P, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|R Chain R, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|T Chain T, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|W Chain W, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Y Chain Y, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|AA Chain a, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|DD Chain d, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|FF Chain f, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|HH Chain h, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|KK Chain k, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|MM Chain m, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|OO Chain o, Crystalstructure Of The Ubiquitin Protease
Length = 138
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 5 RILKELKDLQKDPPTSCSAGPVAED----MFHWQATIMGPSDSPYAGGVFLVTIHFPPDY 60
R+L+EL++ QK + + +D + W I+GP + Y ++ + + P Y
Sbjct: 9 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKY 68
Query: 61 PFKPPKV 67
P PP V
Sbjct: 69 PEAPPSV 75
>pdb|4EPO|A Chain A, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|E Chain E, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|I Chain I, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 5 RILKELKDLQKDPPTSCSAGPVAED----MFHWQATIMGPSDSPYAGGVFLVTIHFPPDY 60
R+L+EL++ QK + + +D + W I+GP + Y ++ + + P Y
Sbjct: 19 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKY 78
Query: 61 PFKPPKV 67
P PP V
Sbjct: 79 PEAPPSV 85
>pdb|2C2V|C Chain C, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|F Chain F, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|I Chain I, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|L Chain L, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 142
Score = 33.9 bits (76), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 5 RILKELKDLQKDPPTSCSAGPVAED----MFHWQATIMGPSDSPYAGGVFLVTIHFPPDY 60
R+L+EL++ QK + + +D + W I+GP + Y ++ + I P Y
Sbjct: 11 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMILGPPRTIYENRIYSLKIECGPKY 70
Query: 61 PFKPPKV 67
P PP V
Sbjct: 71 PEAPPFV 77
>pdb|2HLW|A Chain A, Solution Structure Of The Human Ubiquitin-Conjugating
Enzyme Variant Uev1a
Length = 170
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Query: 5 RILKELKDLQKDPPTSCSAGPVAED----MFHWQATIMGPSDSPYAGGVFLVTIHFPPDY 60
R+L+EL++ QK + + +D + W I+GP + Y ++ + I P Y
Sbjct: 39 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKY 98
Query: 61 PFKPPKVLLSICSLLTDPNPDDPLV 85
P PP V + N + +V
Sbjct: 99 PEAPPFVRFVTKINMNGVNSSNGVV 123
>pdb|2F8L|A Chain A, Crystal Structure Of A Putative Class I
S-Adenosylmethionine-Dependent Methyltransferase
(Lmo1582) From Listeria Monocytogenes At 2.20 A
Resolution
Length = 344
Score = 33.5 bits (75), Expect = 0.029, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 59 DYPFKPPK-VLLSICSLLTDPNPDDPLVPEIAHMYKSDK 96
D KPPK VLL+ S LTDP+ P++ EI + +KS +
Sbjct: 306 DVDVKPPKEVLLANLSSLTDPSVTAPILAEIENWFKSKQ 344
>pdb|2A4D|A Chain A, Structure Of The Human Ubiquitin-Conjugating Enzyme E2
Variant 1 (Uev- 1)
Length = 160
Score = 33.5 bits (75), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 5 RILKELKDLQKDPPTSCSAGPVAED----MFHWQATIMGPSDSPYAGGVFLVTIHFPPDY 60
R+L+EL++ QK + + +D + W I+GP + Y ++ + I P Y
Sbjct: 29 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKY 88
Query: 61 PFKPPKV 67
P PP V
Sbjct: 89 PEAPPFV 95
>pdb|2Q0V|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2,
Putative, From Plasmodium Falciparum
Length = 156
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 3 SKRILKELKDLQK-DPPTSCSAGPVAED---MFHWQATIMGPSDSPYAGGVFLVTIHFPP 58
S R+L EL+ QK + S G + D + +W TI G + + ++ +TI
Sbjct: 23 SFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDD 82
Query: 59 DYPFKPPKV 67
+YP PP V
Sbjct: 83 NYPDSPPTV 91
>pdb|3E95|C Chain C, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 158
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 3 SKRILKELKDLQK-DPPTSCSAGPVAED---MFHWQATIMGPSDSPYAGGVFLVTIHFPP 58
S R+L EL+ QK + S G + D + +W TI G + + ++ +TI
Sbjct: 27 SFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDD 86
Query: 59 DYPFKPPKV 67
+YP PP V
Sbjct: 87 NYPDSPPTV 95
>pdb|1ZXE|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
pdb|1ZXE|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
pdb|1ZXE|C Chain C, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
pdb|1ZXE|D Chain D, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
pdb|1ZXE|E Chain E, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
pdb|1ZXE|F Chain F, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
Length = 303
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 52 VTIHFPPDYPFKPPKVLLSICSLLTDPNPD 81
V+I FPPD+ KV I LL D +P+
Sbjct: 244 VSIEFPPDFDDNKXKVEKKIIRLLIDHDPN 273
>pdb|1ZYC|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type In Apo Form.
pdb|1ZYC|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type In Apo Form.
pdb|1ZYC|C Chain C, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type In Apo Form.
pdb|1ZYC|D Chain D, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type In Apo Form.
pdb|1ZYD|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type Complexed With Atp.
pdb|1ZYD|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type Complexed With Atp
Length = 303
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 52 VTIHFPPDYPFKPPKVLLSICSLLTDPNPD 81
V+I FPPD+ KV I LL D +P+
Sbjct: 244 VSIEFPPDFDDNKMKVEKKIIRLLIDHDPN 273
>pdb|1ZY4|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g
Hyperactivating Mutant In Apo Form.
pdb|1ZY4|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g
Hyperactivating Mutant In Apo Form.
pdb|1ZY5|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g
Hyperactivating Mutant Complexed With Amppnp.
pdb|1ZY5|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g
Hyperactivating Mutant Complexed With Amppnp
Length = 303
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 52 VTIHFPPDYPFKPPKVLLSICSLLTDPNPD 81
V+I FPPD+ KV I LL D +P+
Sbjct: 244 VSIEFPPDFDDNKMKVEKKIIRLLIDHDPN 273
>pdb|1ZUO|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme (Ubci)
Involved In Embryo Attachment And Implantation
pdb|1ZUO|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme (Ubci)
Involved In Embryo Attachment And Implantation
Length = 186
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 17/89 (19%)
Query: 2 ASKRILKELKDLQKDPPTSC---SAGPVAEDMFHWQATIMGPS-DSPYAGGV-------- 49
AS R++KEL+D+ + S + + ++ W + DSP +
Sbjct: 28 ASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEG 87
Query: 50 ---FLVTIHFPPDYPFKPP--KVLLSICS 73
L+ F ++PF PP +V+L + S
Sbjct: 88 IEYILLNFSFKDNFPFDPPFVRVVLPVLS 116
>pdb|4EEI|A Chain A, Crystal Structure Of Adenylosuccinate Lyase From
Francisella Tularensis Complexed With Amp And Succinate
pdb|4EEI|B Chain B, Crystal Structure Of Adenylosuccinate Lyase From
Francisella Tularensis Complexed With Amp And Succinate
Length = 438
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 29/98 (29%), Positives = 42/98 (42%), Gaps = 18/98 (18%)
Query: 4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIH------FP 57
KR LK+LKD QKD T +G V I+ D A + + + P
Sbjct: 162 KRRLKDLKDFQKDGLTVQFSGAVG------NYCILTTEDEKKAADILGLPVEEVSTQVIP 215
Query: 58 PDYPFKPPKVLLSICSLLTDPNPDDPLVPEIAHMYKSD 95
D K L+SI L+ + + L EI H+++SD
Sbjct: 216 RDRIAK----LISIHGLIA--SAIERLAVEIRHLHRSD 247
>pdb|2WGD|A Chain A, Crystal Structure Of Kasa Of Mycobacterium Tuberculosis
pdb|2WGE|A Chain A, Crystal Structure Of Kasa Of Mycobacterium Tuberculosis
With Bound Tlm
Length = 416
Score = 25.8 bits (55), Expect = 6.4, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Query: 17 PPTSCSAGPVAEDMFH-WQATIMGPSDSPYAGGV 49
P ++CS+G +E + H W+ +MG +D GGV
Sbjct: 167 PVSACSSG--SEAIAHAWRQIVMGDADVAVCGGV 198
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,128,251
Number of Sequences: 62578
Number of extensions: 169029
Number of successful extensions: 551
Number of sequences better than 100.0: 128
Number of HSP's better than 100.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 322
Number of HSP's gapped (non-prelim): 222
length of query: 113
length of database: 14,973,337
effective HSP length: 77
effective length of query: 36
effective length of database: 10,154,831
effective search space: 365573916
effective search space used: 365573916
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)