Query 033702
Match_columns 113
No_of_seqs 140 out of 823
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 08:28:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033702.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033702hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_v 60S acidic ribosomal pr 100.0 3.4E-48 1.2E-52 271.7 5.7 113 1-113 1-113 (113)
2 3izc_v 60S acidic ribosomal pr 100.0 1.1E-44 3.9E-49 251.3 5.6 106 1-113 1-106 (106)
3 3izc_t 60S acidic ribosomal pr 100.0 1.7E-37 5.9E-42 215.2 5.5 103 1-113 3-106 (106)
4 3iz5_t 60S acidic ribosomal pr 100.0 4.7E-37 1.6E-41 214.2 6.2 102 4-113 7-110 (110)
5 2lbf_B 60S acidic ribosomal pr 100.0 3.3E-29 1.1E-33 162.3 6.9 69 1-69 2-70 (70)
6 3a1y_A 50S ribosomal protein P 99.9 1.3E-21 4.4E-26 122.4 7.9 56 1-57 1-56 (58)
7 2lbf_A 60S acidic ribosomal pr 99.8 8.6E-20 2.9E-24 117.7 6.0 61 1-69 7-67 (69)
8 3iz5_s 60S acidic ribosomal pr 99.0 1.1E-10 3.7E-15 93.3 2.3 22 92-113 298-319 (319)
9 2zkr_g 60S acidic ribosomal pr 98.9 7.3E-12 2.5E-16 100.0 -6.6 22 92-113 296-317 (317)
10 3u5i_q A0, L10E, 60S acidic ri 98.8 5.3E-10 1.8E-14 89.1 0.0 22 92-113 291-312 (312)
11 3iz5_t 60S acidic ribosomal pr 92.9 0.051 1.7E-06 37.2 2.2 28 25-53 13-40 (110)
12 3izc_t 60S acidic ribosomal pr 89.2 0.33 1.1E-05 32.8 3.3 27 26-53 13-39 (106)
13 3iz5_v 60S acidic ribosomal pr 84.0 0.2 7E-06 34.3 0.0 20 16-35 32-52 (113)
14 3u5i_q A0, L10E, 60S acidic ri 78.0 0.44 1.5E-05 37.5 0.0 14 90-103 292-305 (312)
15 1avs_A Troponin C; muscle cont 67.2 10 0.00036 22.4 4.5 52 5-56 24-80 (90)
16 3j21_k Acidic ribosomal protei 66.9 1.2 4E-05 35.4 0.0 12 45-56 282-293 (339)
17 3kz3_A Repressor protein CI; f 64.3 12 0.00041 22.1 4.4 31 12-42 46-76 (80)
18 3i5g_C Myosin catalytic light 63.8 13 0.00043 25.0 4.9 53 4-56 88-147 (159)
19 2lv7_A Calcium-binding protein 62.8 9.9 0.00034 24.0 4.0 42 5-46 40-81 (100)
20 2kn2_A Calmodulin; S MAPK phos 62.2 15 0.00051 21.7 4.5 53 4-56 12-69 (92)
21 1j7q_A CAVP, calcium vector pr 61.9 20 0.00068 20.8 5.1 42 5-46 18-62 (86)
22 2mys_C Myosin; muscle protein, 61.0 27 0.00092 21.7 6.5 51 6-56 13-70 (149)
23 2kz2_A Calmodulin, CAM; TR2C, 61.0 22 0.00074 21.6 5.3 51 5-55 33-88 (94)
24 2lhi_A Calmodulin, serine/thre 59.6 17 0.0006 24.7 5.0 54 3-56 86-143 (176)
25 1tiz_A Calmodulin-related prot 59.5 19 0.00065 19.5 4.4 42 5-46 5-46 (67)
26 2ktg_A Calmodulin, putative; e 57.1 12 0.00041 21.7 3.4 52 5-56 18-74 (85)
27 2joj_A Centrin protein; N-term 56.5 13 0.00044 21.0 3.4 43 5-47 11-53 (77)
28 4ds7_A Calmodulin, CAM; protei 56.4 24 0.00081 21.9 5.0 42 6-47 89-130 (147)
29 2qac_A Myosin A tail domain in 53.6 38 0.0013 21.2 5.7 52 5-56 18-71 (146)
30 2lmt_A Calmodulin-related prot 53.2 29 0.00098 22.3 5.1 43 4-46 86-128 (148)
31 1wlz_A DJBP, CAP-binding prote 52.3 36 0.0012 20.4 6.1 51 6-56 29-84 (105)
32 2mys_B Myosin; muscle protein, 50.9 41 0.0014 21.6 5.6 52 5-56 29-82 (166)
33 1exr_A Calmodulin; high resolu 50.6 39 0.0013 21.4 5.4 42 6-47 88-129 (148)
34 1s6j_A CDPK, calcium-dependent 50.4 22 0.00074 20.6 3.8 41 6-46 28-68 (87)
35 2obh_A Centrin-2; DNA repair c 50.4 37 0.0013 21.5 5.3 42 5-46 83-124 (143)
36 2ovk_B RLC, myosin regulatory 49.6 30 0.001 21.9 4.7 51 6-56 21-72 (153)
37 2ovk_B RLC, myosin regulatory 48.8 26 0.00089 22.2 4.3 51 6-56 90-144 (153)
38 1k9u_A Polcalcin PHL P 7; poll 48.5 24 0.00081 20.0 3.7 41 5-46 7-47 (78)
39 1k94_A Grancalcin; penta-EF-ha 48.2 47 0.0016 21.4 5.6 50 6-55 75-127 (165)
40 2qac_A Myosin A tail domain in 48.0 17 0.00058 23.0 3.2 35 12-46 95-129 (146)
41 2opo_A Polcalcin CHE A 3; calc 47.9 24 0.00082 20.4 3.7 51 5-56 15-70 (86)
42 1qx2_A Vitamin D-dependent cal 47.4 17 0.00058 20.4 2.9 42 5-46 9-54 (76)
43 3i5g_B Myosin regulatory light 46.3 22 0.00074 23.7 3.7 43 5-47 89-131 (153)
44 2mys_C Myosin; muscle protein, 46.3 40 0.0014 20.8 4.8 40 6-45 90-129 (149)
45 2ewt_A BLDD, putative DNA-bind 45.6 32 0.0011 19.2 4.0 25 12-36 44-68 (71)
46 1y7y_A C.AHDI; helix-turn-heli 45.5 29 0.001 19.5 3.7 25 12-36 47-71 (74)
47 3fwb_A Cell division control p 45.3 34 0.0012 21.6 4.4 42 6-47 101-142 (161)
48 1ggw_A Protein (CDC4P); light 44.8 26 0.00087 21.8 3.7 39 9-47 84-122 (140)
49 3ox6_A Calcium-binding protein 44.4 51 0.0017 20.4 5.1 41 6-46 93-134 (153)
50 3qrx_A Centrin; calcium-bindin 43.4 54 0.0018 20.9 5.3 51 6-56 106-161 (169)
51 3omt_A Uncharacterized protein 43.3 34 0.0012 19.5 3.9 25 12-36 42-66 (73)
52 2keb_A DNA polymerase subunit 43.0 36 0.0012 22.7 4.2 48 9-56 17-66 (101)
53 1n1j_A NF-YB; histone-like PAI 42.8 57 0.0019 20.5 5.1 37 6-42 51-87 (93)
54 1k2h_A S100A1, S-100 protein, 42.7 49 0.0017 19.2 5.6 53 4-56 12-76 (93)
55 2b5a_A C.BCLI; helix-turn-heli 42.6 34 0.0012 19.4 3.8 25 12-36 44-68 (77)
56 2xi8_A Putative transcription 42.5 30 0.001 18.9 3.4 24 12-35 35-58 (66)
57 3h4s_E KCBP interacting Ca2+-b 42.4 43 0.0015 21.4 4.6 52 5-56 44-101 (135)
58 2r1j_L Repressor protein C2; p 42.2 35 0.0012 18.7 3.7 23 13-35 40-62 (68)
59 3b7h_A Prophage LP1 protein 11 42.0 33 0.0011 19.5 3.6 25 12-36 41-66 (78)
60 1c7v_A CAVP, calcium vector pr 41.9 16 0.00054 21.0 2.2 42 6-47 13-55 (81)
61 3bs3_A Putative DNA-binding pr 41.9 37 0.0013 19.2 3.9 26 12-37 44-69 (76)
62 2b1u_A Calmodulin-like protein 41.8 12 0.00041 20.7 1.5 35 13-47 18-52 (71)
63 1k8u_A S100A6, calcyclin, CACY 41.5 38 0.0013 19.5 3.9 44 3-46 12-60 (90)
64 1adr_A P22 C2 repressor; trans 41.4 40 0.0014 19.0 3.9 20 36-56 47-66 (76)
65 3s8q_A R-M controller protein; 41.3 51 0.0017 19.1 5.1 28 11-38 44-71 (82)
66 3dtp_E RLC, myosin regulatory 41.0 48 0.0017 22.4 4.9 52 5-56 61-113 (196)
67 1wdc_B Scallop myosin; calcium 40.6 64 0.0022 20.3 5.2 52 5-56 22-74 (156)
68 2ict_A Antitoxin HIGA; helix-t 40.6 47 0.0016 19.9 4.4 29 11-40 41-69 (94)
69 1taf_B TFIID TBP associated fa 40.5 51 0.0017 20.3 4.4 48 16-64 5-53 (70)
70 3g5g_A Regulatory protein; tra 40.2 62 0.0021 20.1 5.0 28 11-38 61-88 (99)
71 3trb_A Virulence-associated pr 40.2 51 0.0017 20.9 4.6 32 8-40 44-75 (104)
72 2ovk_C Myosin catalytic light 40.1 33 0.0011 21.9 3.7 51 6-56 90-147 (159)
73 2bl0_C Myosin regulatory light 39.6 37 0.0013 21.0 3.8 38 10-47 88-125 (142)
74 3f6w_A XRE-family like protein 39.5 54 0.0018 19.0 4.4 25 12-36 48-72 (83)
75 3iz5_s 60S acidic ribosomal pr 39.4 6.3 0.00021 31.0 0.0 14 90-103 299-312 (319)
76 1gjy_A Sorcin, CP-22, V19; cal 39.1 51 0.0018 21.3 4.6 40 7-46 78-117 (167)
77 3li6_A Calcium-binding protein 38.8 23 0.00079 19.2 2.5 40 7-46 6-45 (66)
78 2k9q_A Uncharacterized protein 38.5 34 0.0012 19.8 3.3 37 18-56 27-63 (77)
79 2eby_A Putative HTH-type trans 38.5 49 0.0017 20.6 4.3 25 11-35 44-68 (113)
80 1gjy_A Sorcin, CP-22, V19; cal 38.3 63 0.0022 20.8 5.0 53 3-55 3-65 (167)
81 3i5g_B Myosin regulatory light 38.2 77 0.0026 20.8 5.5 52 5-56 20-72 (153)
82 1dtl_A Cardiac troponin C; hel 37.8 66 0.0023 20.2 4.9 51 6-56 23-79 (161)
83 1rwy_A Parvalbumin alpha; EF-h 37.4 47 0.0016 19.9 4.0 41 6-46 46-89 (109)
84 3r1f_A ESX-1 secretion-associa 37.3 38 0.0013 22.7 3.8 34 6-39 46-80 (135)
85 2mys_B Myosin; muscle protein, 37.2 65 0.0022 20.6 4.9 41 6-46 100-140 (166)
86 2pvb_A Protein (parvalbumin); 37.2 44 0.0015 20.0 3.8 42 5-46 45-89 (108)
87 1top_A Troponin C; contractIle 37.0 76 0.0026 19.9 5.1 41 6-46 101-141 (162)
88 1yx7_A Calsensin, LAN3-6 antig 36.8 58 0.002 18.4 5.7 43 4-46 10-58 (83)
89 2lnk_A Protein S100-A4; EF-han 36.8 66 0.0023 20.8 4.8 54 3-56 24-89 (113)
90 2pmy_A RAS and EF-hand domain- 36.2 58 0.002 19.2 4.2 41 4-46 30-70 (91)
91 1qjt_A EH1, epidermal growth f 36.2 56 0.0019 20.2 4.3 53 2-56 12-69 (99)
92 1lmb_3 Protein (lambda repress 36.1 58 0.002 19.2 4.2 29 11-39 50-78 (92)
93 1exr_A Calmodulin; high resolu 36.0 58 0.002 20.5 4.4 41 6-46 15-55 (148)
94 1c07_A Protein (epidermal grow 35.9 54 0.0019 19.9 4.1 43 2-46 11-53 (95)
95 1pva_A Parvalbumin; calcium bi 35.8 48 0.0016 19.9 3.8 41 6-46 47-90 (110)
96 3fwb_A Cell division control p 35.7 61 0.0021 20.3 4.5 51 6-56 28-83 (161)
97 2bl0_C Myosin regulatory light 35.7 48 0.0016 20.5 3.9 51 6-56 11-66 (142)
98 2jnf_A Troponin C; stretch act 35.3 54 0.0018 20.7 4.2 42 5-46 95-136 (158)
99 3qwg_A ESX-1 secretion-associa 35.1 46 0.0016 22.0 3.9 35 6-40 44-79 (123)
100 1bu3_A Calcium-binding protein 35.1 51 0.0017 19.8 3.9 42 5-46 46-90 (109)
101 2bl0_B Myosin regulatory light 34.9 40 0.0014 20.8 3.4 42 6-47 81-122 (145)
102 1juo_A Sorcin; calcium-binding 34.5 45 0.0015 22.4 3.8 35 12-46 114-148 (198)
103 3fs7_A Parvalbumin, thymic; ca 34.4 52 0.0018 19.7 3.8 41 6-46 47-90 (109)
104 1w7j_B Myosin light chain 1; m 34.1 23 0.00079 22.3 2.2 39 9-47 95-133 (151)
105 2lhi_A Calmodulin, serine/thre 33.5 46 0.0016 22.5 3.7 41 6-46 16-56 (176)
106 3f52_A CLP gene regulator (CLG 33.4 63 0.0022 20.2 4.2 25 12-36 62-86 (117)
107 1wgl_A TOLL-interacting protei 33.3 34 0.0012 20.3 2.6 29 16-45 6-34 (59)
108 2d58_A Allograft inflammatory 33.2 32 0.0011 21.0 2.7 45 12-56 43-92 (107)
109 3qq6_A HTH-type transcriptiona 33.2 56 0.0019 19.1 3.7 21 15-35 48-68 (78)
110 4ds7_A Calmodulin, CAM; protei 33.1 59 0.002 20.0 4.0 41 6-46 16-56 (147)
111 5pal_A Parvalbumin; calcium-bi 33.1 59 0.002 19.4 3.9 41 6-46 46-89 (109)
112 2i7a_A Calpain 13; calcium-dep 33.0 34 0.0012 23.3 3.0 42 5-47 80-125 (174)
113 1uhk_A Aequorin 2, aequorin; E 32.8 50 0.0017 21.5 3.8 52 5-56 113-169 (191)
114 3sjs_A URE3-BP sequence specif 32.3 64 0.0022 22.5 4.5 42 6-47 122-163 (220)
115 3j04_B Myosin regulatory light 31.8 25 0.00085 21.9 2.0 34 13-46 88-121 (143)
116 2y5i_A S100Z, S100 calcium bin 31.6 92 0.0032 19.2 5.3 54 3-56 12-77 (99)
117 1k94_A Grancalcin; penta-EF-ha 31.5 1E+02 0.0035 19.7 5.1 41 6-46 4-49 (165)
118 2jjz_A Ionized calcium-binding 31.5 44 0.0015 21.9 3.3 45 12-56 61-110 (150)
119 1alv_A Calpain, S-camld; calci 31.4 60 0.0021 21.1 4.0 50 6-55 82-135 (173)
120 1wdc_B Scallop myosin; calcium 31.3 48 0.0017 21.0 3.4 45 12-56 98-146 (156)
121 3qrx_A Centrin; calcium-bindin 31.3 82 0.0028 20.0 4.6 51 6-56 33-88 (169)
122 1b4a_A Arginine repressor; hel 31.3 82 0.0028 21.8 4.8 34 13-46 15-48 (149)
123 3rm1_A Protein S100-B; alpha-h 31.1 87 0.003 18.7 5.9 39 17-55 27-75 (92)
124 1y1x_A Leishmania major homolo 31.1 97 0.0033 20.6 5.1 51 6-56 98-153 (191)
125 2f2o_A Calmodulin fused with c 30.9 1.1E+02 0.0037 19.7 5.3 51 6-56 16-71 (179)
126 2kpj_A SOS-response transcript 30.7 78 0.0027 19.0 4.2 21 35-56 50-70 (94)
127 3ivp_A Putative transposon-rel 30.2 65 0.0022 20.4 3.9 26 12-37 46-71 (126)
128 3cec_A Putative antidote prote 30.0 95 0.0032 18.9 4.6 25 11-35 51-75 (104)
129 2jnf_A Troponin C; stretch act 30.0 59 0.002 20.5 3.7 45 12-56 25-74 (158)
130 1x57_A Endothelial differentia 30.0 62 0.0021 19.2 3.6 23 14-36 49-71 (91)
131 1wy9_A Allograft inflammatory 29.2 37 0.0013 22.2 2.6 45 12-56 59-108 (147)
132 2aao_A CDPK, calcium-dependent 29.2 1.1E+02 0.0037 19.3 4.9 50 7-56 33-87 (166)
133 2jd3_A STBB protein; plasmid s 28.2 64 0.0022 22.4 3.7 24 6-30 58-81 (130)
134 2bec_A Calcineurin B homologou 28.1 88 0.003 20.8 4.5 52 5-56 118-179 (202)
135 2znd_A Programmed cell death p 28.1 95 0.0033 20.0 4.5 42 6-47 79-120 (172)
136 3kfu_G Glutamyl-tRNA(Gln) amid 28.1 1.2E+02 0.004 19.2 6.1 51 16-72 4-54 (92)
137 3lfp_A CSP231I C protein; tran 28.0 80 0.0027 19.1 3.9 27 11-37 38-64 (98)
138 1xk4_A Calgranulin A; S100 fam 27.6 68 0.0023 19.0 3.5 44 3-46 12-58 (93)
139 2ofy_A Putative XRE-family tra 27.1 83 0.0028 18.3 3.8 17 17-33 54-70 (86)
140 1qv0_A Obelin, OBL; photoprote 27.0 50 0.0017 21.6 3.0 52 5-56 117-173 (195)
141 3vk0_A NHTF, transcriptional r 26.8 69 0.0024 20.1 3.5 26 11-36 54-79 (114)
142 1m45_A MLC1P, myosin light cha 26.7 41 0.0014 21.0 2.4 34 13-46 95-128 (148)
143 3ox6_A Calcium-binding protein 26.6 1.1E+02 0.0039 18.6 7.4 51 6-56 16-71 (153)
144 2ast_A S-phase kinase-associat 26.1 47 0.0016 22.7 2.8 41 16-56 92-136 (159)
145 2wiu_B HTH-type transcriptiona 26.0 41 0.0014 19.7 2.1 17 17-33 51-67 (88)
146 1otr_A Protein CUE2; protein-p 25.3 83 0.0028 18.0 3.3 27 16-42 16-42 (49)
147 2l49_A C protein; P2 bacteriop 24.9 53 0.0018 19.7 2.6 23 13-35 39-61 (99)
148 3ip4_C Aspartyl/glutamyl-tRNA( 24.6 1.4E+02 0.0048 19.0 6.4 50 17-72 3-52 (100)
149 3dtp_E RLC, myosin regulatory 24.5 57 0.002 22.0 3.0 50 6-56 131-185 (196)
150 3ll8_B Calcineurin subunit B t 24.4 1.3E+02 0.0045 18.5 4.6 40 6-45 80-120 (155)
151 1wdc_C Scallop myosin; calcium 23.9 57 0.0019 20.5 2.7 33 13-45 96-128 (156)
152 3e3r_A Calcyphosin, calcyphosi 23.8 1.3E+02 0.0043 19.8 4.6 50 7-56 43-97 (204)
153 3op9_A PLI0006 protein; struct 23.8 87 0.003 19.4 3.6 23 13-35 44-66 (114)
154 2a6c_A Helix-turn-helix motif; 23.1 1E+02 0.0035 18.0 3.6 24 12-35 52-76 (83)
155 1cb1_A Calbindin D9K; calcium- 23.0 70 0.0024 17.7 2.7 43 4-46 10-56 (78)
156 3kxa_A NGO0477 protein, putati 23.0 1.1E+02 0.0038 20.3 4.1 24 12-35 102-125 (141)
157 2cp9_A EF-TS, EF-TSMT, elongat 22.9 1.3E+02 0.0045 18.1 4.9 40 13-55 3-42 (64)
158 3pm6_A Putative fructose-bisph 22.9 56 0.0019 25.6 2.9 53 10-63 224-283 (306)
159 2lpy_A Matrix protein P10; GAG 22.8 65 0.0022 22.1 2.9 27 21-47 12-38 (124)
160 2ct9_A Calcium-binding protein 22.5 1.2E+02 0.0041 20.3 4.3 51 6-56 118-178 (208)
161 1ku5_A HPHA, archaeal histon; 22.5 49 0.0017 19.7 2.0 23 6-28 47-69 (70)
162 1b67_A Protein (histone HMFA); 22.5 50 0.0017 19.4 2.0 24 6-29 43-66 (68)
163 2wcb_A Protein S100-A12; calci 22.5 71 0.0024 19.4 2.9 44 3-46 14-64 (95)
164 2lxi_A RNA-binding protein 10; 22.3 60 0.002 19.5 2.4 22 15-36 10-31 (91)
165 1taf_A TFIID TBP associated fa 22.0 98 0.0034 18.8 3.4 23 7-29 43-65 (68)
166 1rro_A RAT oncomodulin; calciu 21.9 66 0.0023 19.2 2.6 41 6-46 46-89 (108)
167 1b0n_A Protein (SINR protein); 21.8 1.2E+02 0.0042 18.3 3.9 20 15-34 39-58 (111)
168 1fi6_A EH domain protein REPS1 21.7 52 0.0018 19.8 2.0 51 3-55 11-66 (92)
169 1y9q_A Transcriptional regulat 21.5 1.3E+02 0.0044 20.3 4.3 29 10-38 43-71 (192)
170 1lng_A SRP19, signal recogniti 21.1 70 0.0024 20.4 2.6 20 16-35 27-46 (87)
171 3h0l_C Glutamyl-tRNA(Gln) amid 21.0 1.6E+02 0.0056 18.4 6.0 49 18-72 2-50 (94)
172 1alv_A Calpain, S-camld; calci 21.0 1.6E+02 0.0056 18.9 4.6 41 5-46 8-56 (173)
173 2da7_A Zinc finger homeobox pr 20.9 59 0.002 20.3 2.2 24 15-38 27-52 (71)
174 2jvl_A TRMBF1; coactivator, he 20.9 1.3E+02 0.0043 18.8 3.9 22 14-35 72-93 (107)
175 3t76_A VANU, transcriptional r 20.1 1.6E+02 0.0054 18.1 4.1 19 18-36 63-81 (88)
No 1
>3iz5_v 60S acidic ribosomal protein P21 - P2 (L12P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_v
Probab=100.00 E-value=3.4e-48 Score=271.65 Aligned_cols=113 Identities=65% Similarity=0.978 Sum_probs=58.7
Q ss_pred ChHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCcchHHHHHHHHhhcCCChHHHHHhhhhhhccCCCCCccccccCCCCC
Q 033702 1 MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKLASVPSGGGVAVAAAPSAG 80 (113)
Q Consensus 1 m~y~aAYlll~l~g~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L~gk~v~eLI~~G~~kl~~~~~gg~a~a~~aa~~a 80 (113)
||||||||||+|+||.+||++||++||+++||+||++|+++|++.|+||||++||.+|++||+|||+||+++++++++++
T Consensus 1 M~yvaAylL~~l~G~~~ptad~I~~ILkAaGveVe~~~~~lf~~aL~gk~I~eLIa~G~~kl~~v~~gg~aa~a~a~a~a 80 (113)
T 3iz5_v 1 MKFIAAYLLAYLSGNASPSAEDLTSILESVGCEIDNEKMELMLSQVKGKDITELLAAGREKFAAVPSGGGGVAVSAAAPA 80 (113)
T ss_dssp CHHHHHHHHHHHHTCCCCTTTTHHHHHHHHTCCCCHHHHHHHHHHHTTCCHHHHHHSCC---------------------
T ss_pred CHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCcCHHHHHHHHHHhcCCCHHHHHHhhHHHhccCCCccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998876432222222
Q ss_pred CCCCCcchhhhhhhhhhhcccccccccCCCCCC
Q 033702 81 GAGAAPAAAEAKKEEKVEEKEESDDDMGFSLFD 113 (113)
Q Consensus 81 ~~~~a~a~~~~~~e~k~eeeeE~ddDmGfgLFd 113 (113)
+++++++++++++++|+|++|||||||||||||
T Consensus 81 ~~~~a~~a~~~~~e~k~ee~EEsDdDmGFgLFD 113 (113)
T 3iz5_v 81 AGGAAAPAAESKKEEKVVEKEESDDDMGFSLFD 113 (113)
T ss_dssp ---------------------------------
T ss_pred ccccccccchhhhhhhcccccccccccccCcCC
Confidence 222211121344456667788899999999998
No 2
>3izc_v 60S acidic ribosomal protein (P2); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_v
Probab=100.00 E-value=1.1e-44 Score=251.31 Aligned_cols=106 Identities=50% Similarity=0.767 Sum_probs=57.5
Q ss_pred ChHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCcchHHHHHHHHhhcCCChHHHHHhhhhhhccCCCCCccccccCCCCC
Q 033702 1 MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKLASVPSGGGVAVAAAPSAG 80 (113)
Q Consensus 1 m~y~aAYlll~l~g~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L~gk~v~eLI~~G~~kl~~~~~gg~a~a~~aa~~a 80 (113)
||||+|||||+++|+. ||++||++||+++||+||++|+.+|++.|+||||++||++|++||+|+|+||+++++++ + +
T Consensus 1 M~yvaAyLL~~~gG~e-~tad~I~~ilkAaGveVe~~~~~~f~~aL~gkdI~eLIa~g~~klasv~sgg~a~aa~a-~-~ 77 (106)
T 3izc_v 1 MKYLAAYLLLNAAGNT-PDATKIKAILESVGIEIEDEKVSSVLSALEGKSVDELITEGNEKLAAVPAAGPASAGGA-A-A 77 (106)
T ss_dssp CHHHHHHHHHHHHTCC-CTTTTHHHHHHHHTCCCCHHHHHHHHHHHTTCCHHHHHHSCC---------------------
T ss_pred CHHHHHHHHHHhcCCC-CCHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCCHHHHHHhhhHHhccCCCccccccccc-c-c
Confidence 9999999999999987 99999999999999999999999999999999999999999999999999887543221 1 1
Q ss_pred CCCCCcchhhhhhhhhhhcccccccccCCCCCC
Q 033702 81 GAGAAPAAAEAKKEEKVEEKEESDDDMGFSLFD 113 (113)
Q Consensus 81 ~~~~a~a~~~~~~e~k~eeeeE~ddDmGfgLFd 113 (113)
++ + ++ ++++++|+|++|||||||||||||
T Consensus 78 a~-~--~~-~~~~e~kee~~EEsdddmGfgLFd 106 (106)
T 3izc_v 78 AS-G--DA-AAEEEKEEEAAEESDDDMGFGLFD 106 (106)
T ss_dssp ---------------------------------
T ss_pred cc-c--cc-ccccccccccccccccccCCCCCC
Confidence 11 1 11 233445567778899999999998
No 3
>3izc_t 60S acidic ribosomal protein RPP11 (P1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_t
Probab=100.00 E-value=1.7e-37 Score=215.21 Aligned_cols=103 Identities=22% Similarity=0.421 Sum_probs=54.8
Q ss_pred ChHHHHHHHHHhcC-CCCCCHHHHHHHHHhcCCCcchHHHHHHHHhhcCCChHHHHHhhhhhhccCCCCCccccccCCCC
Q 033702 1 MKVVAAYLLAVLGG-NTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKLASVPSGGGVAVAAAPSA 79 (113)
Q Consensus 1 m~y~aAYlll~l~g-~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L~gk~v~eLI~~G~~kl~~~~~gg~a~a~~aa~~ 79 (113)
|+|+++|++|+|++ +.+||++||++||+++||+|+++|+.+|++.|+||||++||+ ++++||+++++++ ++
T Consensus 3 ~ela~~YaaLiL~d~~~~~tad~I~~ilkAaGveVe~~~~~lfa~aL~gknI~eLI~-------~~~ag~~~~aa~a-~~ 74 (106)
T 3izc_t 3 TESALSYAALILADSEIEISSEKLLTLTNAANVPDENIWADIFAKALDGQNLKDLLV-------NFSAGAAAPAGVA-GG 74 (106)
T ss_dssp --CHHHHHHHHHHHHTCCCSHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCHHHHTT-------CCC-------------
T ss_pred hHHHHHHHHHHHcCCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhcCCCHHHHHH-------hccCcCccccccc-cc
Confidence 68999999999999 678999999999999999999999999999999999999998 6777665442221 11
Q ss_pred CCCCCCcchhhhhhhhhhhcccccccccCCCCCC
Q 033702 80 GGAGAAPAAAEAKKEEKVEEKEESDDDMGFSLFD 113 (113)
Q Consensus 80 a~~~~a~a~~~~~~e~k~eeeeE~ddDmGfgLFd 113 (113)
+++ +++++ ++++++|+|++|||||||||||||
T Consensus 75 a~~-~~~a~-~~~~~~kee~~EEsddDmGfgLFd 106 (106)
T 3izc_t 75 VAG-GEAGE-AEAEKEEEEAKEESDDDMGFGLFD 106 (106)
T ss_dssp ----------------------------------
T ss_pred ccc-ccccc-chhhhhhcccccccccccccCcCC
Confidence 111 11112 334445567778899999999998
No 4
>3iz5_t 60S acidic ribosomal protein P11 - P1 (L12P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_t
Probab=100.00 E-value=4.7e-37 Score=214.23 Aligned_cols=102 Identities=39% Similarity=0.543 Sum_probs=50.9
Q ss_pred HHHHHHHHhcC-CCCCCHHHHHHHHHhcCCCcchHHHHHHHHhhcCCChHHHHHhhhhhhccCCCCCccccccCCC-CCC
Q 033702 4 VAAYLLAVLGG-NTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKLASVPSGGGVAVAAAPS-AGG 81 (113)
Q Consensus 4 ~aAYlll~l~g-~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L~gk~v~eLI~~G~~kl~~~~~gg~a~a~~aa~-~a~ 81 (113)
...|++|+|++ +.+||++||++||+++||+|+++|+.+|++.|+||||++||+ |+|+||+++++++++ +++
T Consensus 7 a~~YaaLiL~d~~~~itad~I~~ilkAaGveVe~~~~~lfakaL~gknI~eLI~-------sv~~gg~a~~a~a~~a~~~ 79 (110)
T 3iz5_t 7 ACTLAALILHDDGIPITSEKIATVVKAAGIKVEAYWPALFAKLLEKRSVDDLIL-------SVGSGGGGAPAAAAAAPAA 79 (110)
T ss_dssp HHHHHHHHHHHHTCCCSHHHHHHHHHHHTCCCCSHHHHHHHHHHTTCCHHHHHT-------CCC----------------
T ss_pred HHHHHHHHHcCCCCCcChHHHHHHHHHhCCcccHHHHHHHHHHcCCCCHHHHHh-------cCCCccccccccccccccc
Confidence 45677777776 678999999999999999999999999999999999999997 899887654322111 111
Q ss_pred CCCCcchhhhhhhhhhhcccccccccCCCCCC
Q 033702 82 AGAAPAAAEAKKEEKVEEKEESDDDMGFSLFD 113 (113)
Q Consensus 82 ~~~a~a~~~~~~e~k~eeeeE~ddDmGfgLFd 113 (113)
+++++++ ++++++|+|++|||||||||||||
T Consensus 80 ~~~~~a~-~~~~e~k~ee~EEsddDmGfgLFd 110 (110)
T 3iz5_t 80 GGAAAAE-EKKEEKKEEAKEESDDDMGFSLFD 110 (110)
T ss_dssp --------------------------------
T ss_pred ccccccc-chhhhhccccccccccccccccCC
Confidence 1111112 334455667788899999999998
No 5
>2lbf_B 60S acidic ribosomal protein P2; ribosome, stalk, P1/P2; NMR {Homo sapiens} PDB: 2w1o_A
Probab=99.96 E-value=3.3e-29 Score=162.31 Aligned_cols=69 Identities=61% Similarity=0.964 Sum_probs=67.5
Q ss_pred ChHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCcchHHHHHHHHhhcCCChHHHHHhhhhhhccCCCCC
Q 033702 1 MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKLASVPSGG 69 (113)
Q Consensus 1 m~y~aAYlll~l~g~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L~gk~v~eLI~~G~~kl~~~~~gg 69 (113)
|||+||||||+++|+.+||++||++||+++|++||++|+++|+++|+||||+|||.+|++||+++|+||
T Consensus 2 M~yvyA~Lll~~~g~~~~ta~~I~~il~aaGvevd~~~~~~~~~aL~gk~i~elIa~g~~kl~s~p~gg 70 (70)
T 2lbf_B 2 MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIGKLASVPAGG 70 (70)
T ss_dssp CCTHHHHHHHHHHTCSSCCHHHHHHHHHTTTCCCCTTHHHHHHHHHSSCCHHHHHTTCSSSCSSCCCCC
T ss_pred cHHHHHHHHHHhCCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCC
Confidence 999999999999999889999999999999999999999999999999999999999999999999875
No 6
>3a1y_A 50S ribosomal protein P1 (L12P); stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii}
Probab=99.86 E-value=1.3e-21 Score=122.39 Aligned_cols=56 Identities=29% Similarity=0.478 Sum_probs=54.1
Q ss_pred ChHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCcchHHHHHHHHhhcCCChHHHHHh
Q 033702 1 MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIAS 57 (113)
Q Consensus 1 m~y~aAYlll~l~g~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L~gk~v~eLI~~ 57 (113)
|+|++||+||+..|+ +||++||++||+++|++||++|+.+|+++|+||||+|||++
T Consensus 1 m~~~yAallL~~~g~-~~t~~~I~~il~aaGveve~~~~~~~~~~L~gk~i~elI~~ 56 (58)
T 3a1y_A 1 MEYVYAALLLHSVGK-EINEENLKAVLQAAGVEPEEARIKALVAALEGVNIDEVIEK 56 (58)
T ss_dssp CHHHHHHHHHHHTTC-CCCHHHHHHHHHHTTCCCCHHHHHHHHHHHSSCCHHHHHHH
T ss_pred CHHHHHHHHHHhCCC-CCCHHHHHHHHHHcCCCccHHHHHHHHHHHCCCCHHHHHHc
Confidence 999999999999986 79999999999999999999999999999999999999973
No 7
>2lbf_A 60S acidic ribosomal protein P1; ribosome, stalk, P1/P2; NMR {Homo sapiens}
Probab=99.79 E-value=8.6e-20 Score=117.66 Aligned_cols=61 Identities=20% Similarity=0.320 Sum_probs=54.2
Q ss_pred ChHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCcchHHHHHHHHhhcCCChHHHHHhhhhhhccCCCCC
Q 033702 1 MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKLASVPSGG 69 (113)
Q Consensus 1 m~y~aAYlll~l~g~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L~gk~v~eLI~~G~~kl~~~~~gg 69 (113)
|.|++|-+||+..| .+||++||++||+++|++||++|+.+|+++|+||||++||. ++++||
T Consensus 7 la~~YAAllL~~~g-~~~ta~~I~~il~AaGveve~~~~~lf~~aL~gk~I~elI~-------~~g~g~ 67 (69)
T 2lbf_A 7 LACIYSALILHDDE-VTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLIC-------NVGAGG 67 (69)
T ss_dssp HHHHHHHHHHHHHT-CCCCHHHHHHHHHHHTCCCCTHHHHHHHHHTTTSCGGGGGT-------TTTCCC
T ss_pred HHHHHHHHHHHcCC-CCCCHHHHHHHHHHcCCCccHHHHHHHHHHHCCCCHHHHHH-------hccCCC
Confidence 35788888888887 58999999999999999999999999999999999999997 676554
No 8
>3iz5_s 60S acidic ribosomal protein P0 (L10P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_s
Probab=98.99 E-value=1.1e-10 Score=93.31 Aligned_cols=22 Identities=59% Similarity=0.918 Sum_probs=0.0
Q ss_pred hhhhhhhcccccccccCCCCCC
Q 033702 92 KKEEKVEEKEESDDDMGFSLFD 113 (113)
Q Consensus 92 ~~e~k~eeeeE~ddDmGfgLFd 113 (113)
++++++|++|||||||||||||
T Consensus 298 ~~~~~~e~~ee~d~d~gf~lfd 319 (319)
T 3iz5_s 298 EEEKKEEPEEESDGDLGMSLFD 319 (319)
T ss_dssp ----------------------
T ss_pred cccccccccccccccCCCCCCC
Confidence 3445566778889999999998
No 9
>2zkr_g 60S acidic ribosomal protein P0; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=98.93 E-value=7.3e-12 Score=100.00 Aligned_cols=22 Identities=68% Similarity=0.987 Sum_probs=8.7
Q ss_pred hhhhhhhcccccccccCCCCCC
Q 033702 92 KKEEKVEEKEESDDDMGFSLFD 113 (113)
Q Consensus 92 ~~e~k~eeeeE~ddDmGfgLFd 113 (113)
++++++||+|||||||||||||
T Consensus 296 ~~~~~~ee~ee~d~d~gf~lfd 317 (317)
T 2zkr_g 296 AKVEAKEESEESDEDMGFGLFD 317 (317)
T ss_dssp HSTTHHHHTSSCC---------
T ss_pred ccccccCCccccccccCcCCCC
Confidence 3445556778899999999998
No 10
>3u5i_q A0, L10E, 60S acidic ribosomal protein P0; translation, ribosome, ribosomal R ribosomal protein, STM1; 3.00A {Saccharomyces cerevisiae} PDB: 4b6a_q 3izc_s 3izs_s 3j16_G* 3o5h_M 3jyw_8
Probab=98.80 E-value=5.3e-10 Score=89.08 Aligned_cols=22 Identities=68% Similarity=1.060 Sum_probs=0.0
Q ss_pred hhhhhhhcccccccccCCCCCC
Q 033702 92 KKEEKVEEKEESDDDMGFSLFD 113 (113)
Q Consensus 92 ~~e~k~eeeeE~ddDmGfgLFd 113 (113)
++++++|++|||||||||||||
T Consensus 291 ~~~~~~e~~ee~d~d~gf~lfd 312 (312)
T 3u5i_q 291 AEEAAAEEEEESDDDMGFGLFD 312 (312)
T ss_dssp ----------------------
T ss_pred cccccccccccccccCCCCCCC
Confidence 3345566778889999999998
No 11
>3iz5_t 60S acidic ribosomal protein P11 - P1 (L12P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_t
Probab=92.88 E-value=0.051 Score=37.16 Aligned_cols=28 Identities=14% Similarity=0.253 Sum_probs=20.9
Q ss_pred HHHHhcCCCcchHHHHHHHHhhcCCChHH
Q 033702 25 GILGSVGADCEDNRLELLLSEVKGKDITE 53 (113)
Q Consensus 25 kvl~aaGveve~~~~~~f~~~L~gk~v~e 53 (113)
-||.-.|++|....++.++++. |.+|+.
T Consensus 13 LiL~d~~~~itad~I~~ilkAa-GveVe~ 40 (110)
T 3iz5_t 13 LILHDDGIPITSEKIATVVKAA-GIKVEA 40 (110)
T ss_dssp HHHHHHTCCCSHHHHHHHHHHH-TCCCCS
T ss_pred HHHcCCCCCcChHHHHHHHHHh-CCcccH
Confidence 3677778888888888888864 666653
No 12
>3izc_t 60S acidic ribosomal protein RPP11 (P1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_t
Probab=89.23 E-value=0.33 Score=32.83 Aligned_cols=27 Identities=15% Similarity=0.137 Sum_probs=17.0
Q ss_pred HHHhcCCCcchHHHHHHHHhhcCCChHH
Q 033702 26 ILGSVGADCEDNRLELLLSEVKGKDITE 53 (113)
Q Consensus 26 vl~aaGveve~~~~~~f~~~L~gk~v~e 53 (113)
||.-.|++|....++.++++. |.+|+.
T Consensus 13 iL~d~~~~~tad~I~~ilkAa-GveVe~ 39 (106)
T 3izc_t 13 ILADSEIEISSEKLLTLTNAA-NVPDEN 39 (106)
T ss_dssp HHHHHTCCCSHHHHHHHHHHH-TCCCCH
T ss_pred HHcCCCCCCCHHHHHHHHHHc-CCcccH
Confidence 566666777777777766653 555553
No 13
>3iz5_v 60S acidic ribosomal protein P21 - P2 (L12P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_v
Probab=84.00 E-value=0.2 Score=34.29 Aligned_cols=20 Identities=20% Similarity=0.335 Sum_probs=12.6
Q ss_pred CCCCHHHHHHHHHhc-CCCcc
Q 033702 16 TSPSADDIKGILGSV-GADCE 35 (113)
Q Consensus 16 ~~~t~e~I~kvl~aa-Gveve 35 (113)
.++....+..++++. |.+|+
T Consensus 32 veVe~~~~~lf~~aL~gk~I~ 52 (113)
T 3iz5_v 32 CEIDNEKMELMLSQVKGKDIT 52 (113)
T ss_dssp CCCCHHHHHHHHHHHTTCCHH
T ss_pred CCcCHHHHHHHHHHhcCCCHH
Confidence 457777777777766 33443
No 14
>3u5i_q A0, L10E, 60S acidic ribosomal protein P0; translation, ribosome, ribosomal R ribosomal protein, STM1; 3.00A {Saccharomyces cerevisiae} PDB: 4b6a_q 3izc_s 3izs_s 3j16_G* 3o5h_M 3jyw_8
Probab=77.96 E-value=0.44 Score=37.55 Aligned_cols=14 Identities=29% Similarity=0.451 Sum_probs=0.0
Q ss_pred hhhhhhhhhccccc
Q 033702 90 EAKKEEKVEEKEES 103 (113)
Q Consensus 90 ~~~~e~k~eeeeE~ 103 (113)
++++++++||++++
T Consensus 292 ~~~~~e~~ee~d~d 305 (312)
T 3u5i_q 292 EEAAAEEEEESDDD 305 (312)
T ss_dssp --------------
T ss_pred cccccccccccccc
Confidence 34444444555544
No 15
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A
Probab=67.21 E-value=10 Score=22.41 Aligned_cols=52 Identities=19% Similarity=0.356 Sum_probs=38.2
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHhcCCCcchHHHHHHHHhhcC-----CChHHHHH
Q 033702 5 AAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKG-----KDITELIA 56 (113)
Q Consensus 5 aAYlll~l~g~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L~g-----k~v~eLI~ 56 (113)
.+|-++-..++-.||.+++..+|...|..+....+..+.+.+.. .++.+.+.
T Consensus 24 ~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~~~~D~~~dg~i~~~eF~~ 80 (90)
T 1avs_A 24 AAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLV 80 (90)
T ss_dssp HHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHHHCTTCCSSEEHHHHHH
T ss_pred HHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHH
Confidence 45555555666679999999999999999888888877777631 34556554
No 16
>3j21_k Acidic ribosomal protein P0 homolog; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=66.94 E-value=1.2 Score=35.42 Aligned_cols=12 Identities=8% Similarity=0.086 Sum_probs=0.0
Q ss_pred hhcCCChHHHHH
Q 033702 45 EVKGKDITELIA 56 (113)
Q Consensus 45 ~L~gk~v~eLI~ 56 (113)
.+...++.+-|.
T Consensus 282 ~~~~~~~~e~~~ 293 (339)
T 3j21_k 282 QLPEDVLDEKTK 293 (339)
T ss_dssp ------------
T ss_pred hhccccchhHHh
Confidence 334444444443
No 17
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=64.28 E-value=12 Score=22.08 Aligned_cols=31 Identities=10% Similarity=0.057 Sum_probs=25.1
Q ss_pred hcCCCCCCHHHHHHHHHhcCCCcchHHHHHH
Q 033702 12 LGGNTSPSADDIKGILGSVGADCEDNRLELL 42 (113)
Q Consensus 12 l~g~~~~t~e~I~kvl~aaGveve~~~~~~f 42 (113)
..|+..|+.+.+.+|.+..|++++...+.+.
T Consensus 46 e~g~~~~~~~~~~~ia~~l~v~~~~l~~~l~ 76 (80)
T 3kz3_A 46 FNGINALNAYNAALLAKILKVSVEEFSPSIA 76 (80)
T ss_dssp HTTSSCCCHHHHHHHHHHHTSCGGGTCHHHH
T ss_pred HcCCCCCCHHHHHHHHHHhCCCHHHHhHHHH
Confidence 4566778999999999999999887766543
No 18
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=63.83 E-value=13 Score=25.04 Aligned_cols=53 Identities=13% Similarity=0.219 Sum_probs=41.0
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHhcCCCcchHHHHHHHHhhc---C----CChHHHHH
Q 033702 4 VAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVK---G----KDITELIA 56 (113)
Q Consensus 4 ~aAYlll~l~g~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L~---g----k~v~eLI~ 56 (113)
.-|+-++-..|+-.||.++++.+|+..|..+.+.-+..+++.+. + .++++.+.
T Consensus 88 ~~aF~~fD~d~~G~I~~~el~~~l~~~g~~ls~~e~~~l~~~~D~~~d~dG~I~~~EF~~ 147 (159)
T 3i5g_C 88 MEAFKTFDREGQGLISSAEIRNVLKMLGERITEDQCNDIFTFCDIREDIDGNIKYEDLMK 147 (159)
T ss_dssp HHHHHHHCTTSSSEECHHHHHHHHHHSSSCCCHHHHHHHHHHTTCCCCSSCCEEHHHHHH
T ss_pred HHHHHHHhcCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCcCCCCCCeEeHHHHHH
Confidence 45666666667667999999999999999999888888887764 1 35667664
No 19
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=62.85 E-value=9.9 Score=24.00 Aligned_cols=42 Identities=19% Similarity=0.258 Sum_probs=33.4
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHhcCCCcchHHHHHHHHhh
Q 033702 5 AAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEV 46 (113)
Q Consensus 5 aAYlll~l~g~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L 46 (113)
-++-++-..++-.||.++++.+|+..|..+....+..+++.+
T Consensus 40 ~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~~~ 81 (100)
T 2lv7_A 40 EAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQRL 81 (100)
T ss_dssp HHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHHHH
T ss_pred HHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 345555566767799999999999999998887777777766
No 20
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max}
Probab=62.22 E-value=15 Score=21.66 Aligned_cols=53 Identities=17% Similarity=0.255 Sum_probs=39.3
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHhcCCCcchHHHHHHHHhhcC-----CChHHHHH
Q 033702 4 VAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKG-----KDITELIA 56 (113)
Q Consensus 4 ~aAYlll~l~g~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L~g-----k~v~eLI~ 56 (113)
..+|-++-..++-.|+.+++..+|...|..+....+..+.+.+.. .++.+.+.
T Consensus 12 ~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~~~~d~~~dg~i~~~eF~~ 69 (92)
T 2kn2_A 12 KEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQMIKEADLDGDGQVNYEEFVK 69 (92)
T ss_dssp HHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHHHCSSCCSSEEHHHHHH
T ss_pred HHHHHHHCCCCCCeEcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHH
Confidence 345555555666679999999999999998888888888777741 45667664
No 21
>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A
Probab=61.91 E-value=20 Score=20.81 Aligned_cols=42 Identities=7% Similarity=0.051 Sum_probs=31.7
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHhcCCCcchHH---HHHHHHhh
Q 033702 5 AAYLLAVLGGNTSPSADDIKGILGSVGADCEDNR---LELLLSEV 46 (113)
Q Consensus 5 aAYlll~l~g~~~~t~e~I~kvl~aaGveve~~~---~~~f~~~L 46 (113)
-+|-++-..++-.|+.+++..+|...|..+.... +..+.+.+
T Consensus 18 ~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~ 62 (86)
T 1j7q_A 18 KIFDIFDRNAENIAPVSDTMDMLTKLGQTYTKRETEAIMKEARGP 62 (86)
T ss_dssp HHHHHHSTTTTSCBCHHHHHHHHHHTSCCCSHHHHHHHHHHHHCS
T ss_pred HHHHHhCCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence 3455555566667999999999999999888777 66666555
No 22
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*
Probab=61.03 E-value=27 Score=21.70 Aligned_cols=51 Identities=18% Similarity=0.323 Sum_probs=37.3
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHhcCCCcchHHHHHHHHhh-------cCCChHHHHH
Q 033702 6 AYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEV-------KGKDITELIA 56 (113)
Q Consensus 6 AYlll~l~g~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L-------~gk~v~eLI~ 56 (113)
.|-.+-..++-.||.+++..+|...|..+....+..+.+.+ ...++.+.+.
T Consensus 13 ~F~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~l~~~~~~~d~~~g~i~~~eF~~ 70 (149)
T 2mys_C 13 AFLLFDRTGDAKITASQVGDIARALGQNPTNAEINKILGNPSKEEMNAAAITFEEFLP 70 (149)
T ss_pred HHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhhhccccCCcCcHHHHHH
Confidence 34445455566799999999999999988888887777666 3356677664
No 23
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Probab=61.00 E-value=22 Score=21.59 Aligned_cols=51 Identities=18% Similarity=0.343 Sum_probs=36.3
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHhcCCCcchHHHHHHHHhhcC-----CChHHHH
Q 033702 5 AAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKG-----KDITELI 55 (113)
Q Consensus 5 aAYlll~l~g~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L~g-----k~v~eLI 55 (113)
-+|-++-..++-.|+.+++..+|...|..+....+..+.+.+.. .++.+.+
T Consensus 33 ~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~e~~~l~~~~D~d~dG~I~~~EF~ 88 (94)
T 2kz2_A 33 EAFRVEDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFV 88 (94)
T ss_dssp HHHHHHCTTCCSCBCHHHHHHHHHHHTCCCCHHHHHHHHHHHCTTCSSSBCHHHHH
T ss_pred HHHHHHCCCCcCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHH
Confidence 34555555566679999999999999988888777777776631 3455554
No 24
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=59.58 E-value=17 Score=24.67 Aligned_cols=54 Identities=26% Similarity=0.395 Sum_probs=40.8
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCcchHHHHHHHHhhcC----CChHHHHH
Q 033702 3 VVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKG----KDITELIA 56 (113)
Q Consensus 3 y~aAYlll~l~g~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L~g----k~v~eLI~ 56 (113)
...|+-++-..|+-.||.++++.+|...|..+.+..+..+++.+.. .+++|.+.
T Consensus 86 l~~aF~~fD~d~~G~I~~~el~~~l~~~g~~~~~~ei~~l~~~~dd~dG~I~~~EF~~ 143 (176)
T 2lhi_A 86 LLEAFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDDMLREVSDGSGEINIQQFAA 143 (176)
T ss_dssp HHHHHHHHCSSCSSSBCHHHHHHHHHTTTCCCCHHHHHHHHHHHHTTSSCBCTTHHHH
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHcCcccchHHHHHHHHhhcCCCCeEeHHHHHH
Confidence 3456666767777789999999999999999888888877776643 35566653
No 25
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: a.39.1.5
Probab=59.47 E-value=19 Score=19.50 Aligned_cols=42 Identities=7% Similarity=0.072 Sum_probs=32.3
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHhcCCCcchHHHHHHHHhh
Q 033702 5 AAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEV 46 (113)
Q Consensus 5 aAYlll~l~g~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L 46 (113)
.++-.+-..++-.||.+++..++...|..+....+..+.+.+
T Consensus 5 ~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 46 (67)
T 1tiz_A 5 RVFEKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKFFEEI 46 (67)
T ss_dssp HHHHHHCTTSSSCEEHHHHHHHHHHTCTTSCHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 344555555666799999999999999988888777777666
No 26
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially structured protein, CAM-like; NMR {Entamoeba histolytica} PDB: 2lc5_A
Probab=57.07 E-value=12 Score=21.69 Aligned_cols=52 Identities=12% Similarity=0.282 Sum_probs=37.3
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHhcCCCcchHHHHHHHHhhcC-----CChHHHHH
Q 033702 5 AAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKG-----KDITELIA 56 (113)
Q Consensus 5 aAYlll~l~g~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L~g-----k~v~eLI~ 56 (113)
.+|-++-..++-.|+.+++..+|...|..+....+..+.+.+.. .++.+.+.
T Consensus 18 ~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~ 74 (85)
T 2ktg_A 18 EAFQLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIVKDYDKDNSGKFDQETFLT 74 (85)
T ss_dssp HHHHHTCTTCCSEEEHHHHHHHHHTTSSCCCHHHHHHHHHHHSSSSCSEEEHHHHHH
T ss_pred HHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHH
Confidence 34555555555669999999999999998888888877777631 34556554
No 27
>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}
Probab=56.45 E-value=13 Score=21.00 Aligned_cols=43 Identities=19% Similarity=0.199 Sum_probs=32.5
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHhcCCCcchHHHHHHHHhhc
Q 033702 5 AAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVK 47 (113)
Q Consensus 5 aAYlll~l~g~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L~ 47 (113)
.+|-++-..++-.||.+++..+|...|..+....+..+.+.+.
T Consensus 11 ~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d 53 (77)
T 2joj_A 11 EAFDLFDTNKTGSIDYHELKVAMRALGFDVKKPEILELMNEYD 53 (77)
T ss_dssp HHHHHHCCSSSSEEEHHHHHHHHHHHTCCCHHHHHHHHHHHHC
T ss_pred HHHHHhCCCCCCCCcHHHHHHHHHHhCCCCCHHHHHHHHHHHC
Confidence 3455555555567999999999999999888877777777663
No 28
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 2lhh_A 1f54_A 1f55_A
Probab=56.37 E-value=24 Score=21.92 Aligned_cols=42 Identities=29% Similarity=0.413 Sum_probs=32.9
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHhcCCCcchHHHHHHHHhhc
Q 033702 6 AYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVK 47 (113)
Q Consensus 6 AYlll~l~g~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L~ 47 (113)
+|-.+-..++-.||.+++..++...|..+.+..+..+.+.+.
T Consensus 89 ~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 130 (147)
T 4ds7_A 89 AFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDEMLREVS 130 (147)
T ss_dssp HHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHHHS
T ss_pred HHHHhCCCCCCeECHHHHHHHHHHcCCCCCHHHHHHHHHHhc
Confidence 344444555667999999999999999998888888877774
No 29
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion, structural genomics, PSI, protein structur initiative, structural genomics of pathogenic protozoa CONS SGPP; 1.70A {Plasmodium falciparum} PDB: 2auc_A
Probab=53.60 E-value=38 Score=21.24 Aligned_cols=52 Identities=6% Similarity=-0.102 Sum_probs=37.6
Q ss_pred HHHHHHHhcC-CCCCCHHHHHHHHHhcCCCcchHHHHHHHHhhcC-CChHHHHH
Q 033702 5 AAYLLAVLGG-NTSPSADDIKGILGSVGADCEDNRLELLLSEVKG-KDITELIA 56 (113)
Q Consensus 5 aAYlll~l~g-~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L~g-k~v~eLI~ 56 (113)
..|-.+-..+ +-.||.+++..+|+..|..+....+..+.+.+.. .++.+.+.
T Consensus 18 ~~F~~~D~d~~~G~i~~~el~~~l~~~g~~~~~~~~~~l~~~~d~~i~~~eF~~ 71 (146)
T 2qac_A 18 DVRIYFNEKSSGGKISIDNASYNARKLGLAPSSIDEKKIKELYGDNLTYEQYLE 71 (146)
T ss_dssp HHHHHHHHHCBTTBEEHHHHHHHHHHTTCCCCHHHHHHHHHHHCSEECHHHHHH
T ss_pred HHHHHhCccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCHHHHHH
Confidence 4455566666 5678999999999999998887777777666544 55666654
No 30
>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A
Probab=53.16 E-value=29 Score=22.34 Aligned_cols=43 Identities=14% Similarity=0.275 Sum_probs=34.6
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHhcCCCcchHHHHHHHHhh
Q 033702 4 VAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEV 46 (113)
Q Consensus 4 ~aAYlll~l~g~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L 46 (113)
..+|-.+-..|+-.||.++++.+|...|..+....+..+++.+
T Consensus 86 ~~aF~~~D~d~~G~I~~~El~~~l~~~g~~~~~~e~~~l~~~~ 128 (148)
T 2lmt_A 86 REAFKIFDRDGDGFISPAELRFVMINLGEKVTDEEIDEMIREA 128 (148)
T ss_dssp HHHHHHHHSSCSSEECHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHCCCCcCcCcHHHHHHHHHHcCccccHHHHHHHHHHh
Confidence 3466677777777799999999999999988888777777665
No 31
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A; EF-hand like, unknown function; 1.60A {Homo sapiens} SCOP: a.39.1.7
Probab=52.26 E-value=36 Score=20.45 Aligned_cols=51 Identities=10% Similarity=0.100 Sum_probs=39.2
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHhcCCCcchHHHHHHHHhhc-----CCChHHHHH
Q 033702 6 AYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVK-----GKDITELIA 56 (113)
Q Consensus 6 AYlll~l~g~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L~-----gk~v~eLI~ 56 (113)
++-.+-..++-.|+.+++..+|...|..+....+..+.+.+. ..++.+++.
T Consensus 29 ~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~e~~~l~~~~d~~~~g~i~~~eF~~ 84 (105)
T 1wlz_A 29 EFENFDTMKTNTISREEFRAICNRRVQILTDEQFDRLWNEMPVNAKGRLKYPDFLS 84 (105)
T ss_dssp HHHHHCTTCSSCBCHHHHHHHHHHHTCCCCHHHHHHHHTTSCBCTTSCBCHHHHHH
T ss_pred HHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCCCCCCcHHHHHH
Confidence 444555556667999999999999999988888888887774 256778775
No 32
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Probab=50.91 E-value=41 Score=21.57 Aligned_cols=52 Identities=15% Similarity=0.390 Sum_probs=36.4
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHhcCC-CcchHHHHHHHHhhcC-CChHHHHH
Q 033702 5 AAYLLAVLGGNTSPSADDIKGILGSVGA-DCEDNRLELLLSEVKG-KDITELIA 56 (113)
Q Consensus 5 aAYlll~l~g~~~~t~e~I~kvl~aaGv-eve~~~~~~f~~~L~g-k~v~eLI~ 56 (113)
..|-.+-..++-.||.+++..+|...|. .+....+..+.+...| .++.+.+.
T Consensus 29 ~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~~dg~i~~~eF~~ 82 (166)
T 2mys_B 29 EAFTVIDQNADGIIDKDDLRETFAAMGRLNVKNEELDAMIKEASGPINFTVFLT 82 (166)
T ss_pred HHHHHHCCCCCCcCCHHHHHHHHHHhCCCCCCHHHHHHHHHHCCCCcCHHHHHH
Confidence 3455555566667999999999999998 8777776666655543 45566654
No 33
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A {Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A 1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D* 2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A 1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Probab=50.62 E-value=39 Score=21.37 Aligned_cols=42 Identities=19% Similarity=0.376 Sum_probs=32.2
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHhcCCCcchHHHHHHHHhhc
Q 033702 6 AYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVK 47 (113)
Q Consensus 6 AYlll~l~g~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L~ 47 (113)
++-.+-..++-.||.+++..++...|..+.+..+..+++.+.
T Consensus 88 ~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d 129 (148)
T 1exr_A 88 AFKVFDRDGNGLISAAELRHVMTNLGEKLTDDEVDEMIREAD 129 (148)
T ss_dssp HHHHHSTTCSSCBCHHHHHHHHHHTTCCCCHHHHHHHHHHHC
T ss_pred HHHHhCCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHhC
Confidence 444444556667999999999999998888877777777663
No 34
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand, helix-loop-helix, calcium-binding, calmodulin superfamily, transferase, plant protein; NMR {Glycine max} SCOP: a.39.1.5
Probab=50.39 E-value=22 Score=20.59 Aligned_cols=41 Identities=15% Similarity=0.257 Sum_probs=31.7
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHhcCCCcchHHHHHHHHhh
Q 033702 6 AYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEV 46 (113)
Q Consensus 6 AYlll~l~g~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L 46 (113)
+|-.+-..++-.|+.+++..+|...|..+....+..+.+.+
T Consensus 28 ~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~l~~~~ 68 (87)
T 1s6j_A 28 LFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAA 68 (87)
T ss_dssp HHHHHCTTCSSCEEHHHHHHHHHTTTSSCCHHHHHHHHHHH
T ss_pred HHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 34445555566799999999999999988887777777666
No 35
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB: 3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Probab=50.36 E-value=37 Score=21.52 Aligned_cols=42 Identities=19% Similarity=0.258 Sum_probs=32.0
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHhcCCCcchHHHHHHHHhh
Q 033702 5 AAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEV 46 (113)
Q Consensus 5 aAYlll~l~g~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L 46 (113)
.++-++-..++-.||.+++..++...|..+.+..+..+++.+
T Consensus 83 ~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~ 124 (143)
T 2obh_A 83 KAFKLFDDDETGKISFKNLKRVAKELGENLTDEELQEMIDEA 124 (143)
T ss_dssp HHHHHHCTTCSSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 345555556666799999999999999888777777776665
No 36
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Probab=49.64 E-value=30 Score=21.92 Aligned_cols=51 Identities=22% Similarity=0.371 Sum_probs=38.2
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHhcCCCcchHHHHHHHHhhcC-CChHHHHH
Q 033702 6 AYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKG-KDITELIA 56 (113)
Q Consensus 6 AYlll~l~g~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L~g-k~v~eLI~ 56 (113)
.+-.+-..++-.||.+++..+|...|..+....+..+.+.+.| .++.+.+.
T Consensus 21 ~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~g~i~~~eF~~ 72 (153)
T 2ovk_B 21 AFTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAMLKECPGQLNFTAFLT 72 (153)
T ss_dssp HHHHHCCSTTTCCCHHHHHHHTTTTTSCCCHHHHHHHHHHSSSCCCSHHHHH
T ss_pred HHHHhCCCCCCeECHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCCCHHHHHH
Confidence 3444445556679999999999999999888888877776643 46677765
No 37
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Probab=48.85 E-value=26 Score=22.23 Aligned_cols=51 Identities=12% Similarity=0.241 Sum_probs=36.7
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHhcCCCcchHHHHHHHHhhc----CCChHHHHH
Q 033702 6 AYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVK----GKDITELIA 56 (113)
Q Consensus 6 AYlll~l~g~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L~----gk~v~eLI~ 56 (113)
+|-.+-..++-.||.+++..+|...|..+.+..+..+++.+. ..++.+.+.
T Consensus 90 ~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~dg~I~~~eF~~ 144 (153)
T 2ovk_B 90 AFSMFDEDGQGFIPEDYLKDLLENMGDNFSKEEIKNVWKDAPLKNKQFNYNKMVD 144 (153)
T ss_dssp HHHTTCSSCSSCCCHHHHHHHHHHSSSCCCHHHHHHHHHHCCEETTEECHHHHHH
T ss_pred HHHHHCCCCCCeEcHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCCCEEeHHHHHH
Confidence 344444456667999999999999999888888887777764 234555553
No 38
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand, cross-reactivity; 1.75A {Phleum pratense} SCOP: a.39.1.10
Probab=48.49 E-value=24 Score=20.00 Aligned_cols=41 Identities=12% Similarity=0.286 Sum_probs=30.5
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHhcCCCcchHHHHHHHHhh
Q 033702 5 AAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEV 46 (113)
Q Consensus 5 aAYlll~l~g~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L 46 (113)
.++-.+-..++-.||.+++..+|...| .+.+..+..+.+.+
T Consensus 7 ~~F~~~D~~~~G~i~~~el~~~l~~~g-~~~~~~~~~~~~~~ 47 (78)
T 1k9u_A 7 RIFKRFDTNGDGKISLSELTDALRTLG-STSADEVQRMMAEI 47 (78)
T ss_dssp HHHHHHCTTCSSEECHHHHHHHHHHHH-TCCHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCcCcHHHHHHHHHHhC-CCCHHHHHHHHHHh
Confidence 344555555666799999999999999 77777777777666
No 39
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8 PDB: 1k95_A 1f4q_A 1f4o_A
Probab=48.15 E-value=47 Score=21.39 Aligned_cols=50 Identities=8% Similarity=0.212 Sum_probs=34.8
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHhcCCCcchHHHHHHHHhhcC---CChHHHH
Q 033702 6 AYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKG---KDITELI 55 (113)
Q Consensus 6 AYlll~l~g~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L~g---k~v~eLI 55 (113)
++-.+-..++-.||.+++..++...|..+.+..+..+.+.+.+ .+..+.+
T Consensus 75 ~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~dg~i~~~eF~ 127 (165)
T 1k94_A 75 NFMTVDQDGSGTVEHHELRQAIGLMGYRLSPQTLTTIVKRYSKNGRIFFDDYV 127 (165)
T ss_dssp HHHHHCTTCCSBCCHHHHHHHHHHTTCCCCHHHHHHHHHHHCBTTBCBHHHHH
T ss_pred HHHHhCCCCCceECHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCeEcHHHHH
Confidence 3444444556679999999999999988888777777766621 3445554
No 40
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion, structural genomics, PSI, protein structur initiative, structural genomics of pathogenic protozoa CONS SGPP; 1.70A {Plasmodium falciparum} PDB: 2auc_A
Probab=48.00 E-value=17 Score=22.99 Aligned_cols=35 Identities=17% Similarity=0.108 Sum_probs=26.9
Q ss_pred hcCCCCCCHHHHHHHHHhcCCCcchHHHHHHHHhh
Q 033702 12 LGGNTSPSADDIKGILGSVGADCEDNRLELLLSEV 46 (113)
Q Consensus 12 l~g~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L 46 (113)
..++-.||.+++..++...|..+.+..+..+++.+
T Consensus 95 ~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~ 129 (146)
T 2qac_A 95 NNCTGYLTKSQMKNILTTWGDALTDQEAIDALNAF 129 (146)
T ss_dssp TTCSSEEEHHHHHHHHHHSSSCCCHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHc
Confidence 34455689999999999999888877777766665
No 41
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A
Probab=47.89 E-value=24 Score=20.39 Aligned_cols=51 Identities=12% Similarity=0.250 Sum_probs=35.5
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHhcCCCcchHHHHHHHHhhcC-----CChHHHHH
Q 033702 5 AAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKG-----KDITELIA 56 (113)
Q Consensus 5 aAYlll~l~g~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L~g-----k~v~eLI~ 56 (113)
.+|-++-..++-.||.+++..+|...| .+....+..+.+.+.. .+..+.+.
T Consensus 15 ~~F~~~D~d~~G~i~~~el~~~l~~~g-~~~~~~~~~~~~~~D~~~dg~i~~~eF~~ 70 (86)
T 2opo_A 15 RIFKRFDTNGDGKISSSELGDALKTLG-SVTPDEVRRMMAEIDTDGDGFISFDEFTD 70 (86)
T ss_dssp HHHHHHCTTCSSEEEHHHHHHHHHTTT-TCCHHHHHHHHHHHCTTCSSEECHHHHHH
T ss_pred HHHHHHCCCCCCCcCHHHHHHHHHHcC-CCCHHHHHHHHHHhCCCCCCcCcHHHHHH
Confidence 345555555666789999999999999 8777777777776631 35566553
No 42
>1qx2_A Vitamin D-dependent calcium-binding protein, INTE; EF-hand (helix-loop-helix) calcium binding protein, four-HEL domain, protein engineering; HET: FME; 1.44A {Bos taurus} SCOP: a.39.1.1 PDB: 1kcy_A 1kqv_A 1ksm_A 1n65_A 1ht9_A 4icb_A 1cdn_A 1clb_A 2bca_A 1ig5_A 1igv_A 3icb_A 1d1o_A 1b1g_A 2bcb_A 1boc_A 1bod_A
Probab=47.39 E-value=17 Score=20.36 Aligned_cols=42 Identities=19% Similarity=0.361 Sum_probs=29.7
Q ss_pred HHHHHH-HhcCC-CCCCHHHHHHHHHhcCCCc--chHHHHHHHHhh
Q 033702 5 AAYLLA-VLGGN-TSPSADDIKGILGSVGADC--EDNRLELLLSEV 46 (113)
Q Consensus 5 aAYlll-~l~g~-~~~t~e~I~kvl~aaGvev--e~~~~~~f~~~L 46 (113)
.+|-++ -..++ -.|+.+++..+|+..|..+ ....+..+.+.+
T Consensus 9 ~~F~~~~D~d~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~l~~~~ 54 (76)
T 1qx2_A 9 GAFEVFAAKEGDPNQISKEELKLVMQTLGPSLLKGMSTLDEMIEEV 54 (76)
T ss_dssp HHHHHHHTSSSCTTSEEHHHHHHHHHHHGGGSCTTSCSHHHHHHHH
T ss_pred HHHHHHcccCCCcCeECHHHHHHHHHHhCCCcCCCHHHHHHHHHHh
Confidence 345555 44555 5699999999999999877 665566555555
No 43
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=46.29 E-value=22 Score=23.66 Aligned_cols=43 Identities=14% Similarity=0.248 Sum_probs=32.9
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHhcCCCcchHHHHHHHHhhc
Q 033702 5 AAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVK 47 (113)
Q Consensus 5 aAYlll~l~g~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L~ 47 (113)
.|+-++-..|+-.||.++++.+|...|..+.+.-+..+++.+.
T Consensus 89 ~aF~~fD~d~~G~I~~~el~~~l~~~g~~ls~~ei~~~~~~~D 131 (153)
T 3i5g_B 89 NAFSMFDEDGQGFIPEDYLKDLLENMGDNFSKEEIKNVWKDAP 131 (153)
T ss_dssp HHHHTTCSSCSSCCCHHHHHHHHHSSSSCCCHHHHHHHHTTCC
T ss_pred HHHhccccCCCCeEeHHHHHHHHHHcCCcCCHHHHHHHHHHhC
Confidence 4555555566667999999999999999888877777776553
No 44
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*
Probab=46.25 E-value=40 Score=20.84 Aligned_cols=40 Identities=15% Similarity=0.304 Sum_probs=29.1
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHhcCCCcchHHHHHHHHh
Q 033702 6 AYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSE 45 (113)
Q Consensus 6 AYlll~l~g~~~~t~e~I~kvl~aaGveve~~~~~~f~~~ 45 (113)
+|-++-..++-.||.+++..++...|..+....+..+++.
T Consensus 90 ~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~ 129 (149)
T 2mys_C 90 GLRVFDKEGNGTVMGAELRHVLATLGEKMTEEEVEELMKG 129 (149)
T ss_pred HHHHhCCCCCceEcHHHHHHHHHHhCCCCCHHHHHHHHhh
Confidence 3444444555669999999999999988777777666654
No 45
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=45.56 E-value=32 Score=19.22 Aligned_cols=25 Identities=8% Similarity=0.217 Sum_probs=18.2
Q ss_pred hcCCCCCCHHHHHHHHHhcCCCcch
Q 033702 12 LGGNTSPSADDIKGILGSVGADCED 36 (113)
Q Consensus 12 l~g~~~~t~e~I~kvl~aaGveve~ 36 (113)
..|+..|+.+.+.+|.+..|++++.
T Consensus 44 e~g~~~~~~~~l~~la~~l~v~~~~ 68 (71)
T 2ewt_A 44 ERGDRAVTVQRLAELADFYGVPVQE 68 (71)
T ss_dssp HHTCSCCCHHHHHHHHHHHTSCGGG
T ss_pred HCCCCCCCHHHHHHHHHHHCcCHHH
Confidence 3455668888888888888877654
No 46
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=45.48 E-value=29 Score=19.48 Aligned_cols=25 Identities=12% Similarity=0.121 Sum_probs=18.1
Q ss_pred hcCCCCCCHHHHHHHHHhcCCCcch
Q 033702 12 LGGNTSPSADDIKGILGSVGADCED 36 (113)
Q Consensus 12 l~g~~~~t~e~I~kvl~aaGveve~ 36 (113)
..|+..|+.+.+.+|.+..|++++.
T Consensus 47 e~g~~~~~~~~l~~l~~~l~~~~~~ 71 (74)
T 1y7y_A 47 ERGQRNVSLVNILKLATALDIEPRE 71 (74)
T ss_dssp HTTCSCCBHHHHHHHHHHTTSCGGG
T ss_pred HCCCCCCCHHHHHHHHHHhCcCHHH
Confidence 4555667888888888888776654
No 47
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=45.31 E-value=34 Score=21.57 Aligned_cols=42 Identities=17% Similarity=0.255 Sum_probs=32.0
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHhcCCCcchHHHHHHHHhhc
Q 033702 6 AYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVK 47 (113)
Q Consensus 6 AYlll~l~g~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L~ 47 (113)
+|-.+-..++-.||.+++..+|...|..+.+..+..+++.+.
T Consensus 101 ~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d 142 (161)
T 3fwb_A 101 AFQLFDDDHTGKISIKNLRRVAKELGETLTDEELRAMIEEFD 142 (161)
T ss_dssp HHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHTTC
T ss_pred HHHHHcCCCCCeEeHHHHHHHHHHhCCCCCHHHHHHHHHHhC
Confidence 344444455556999999999999999988888887777663
No 48
>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR {Schizosaccharomyces pombe} SCOP: a.39.1.5
Probab=44.81 E-value=26 Score=21.84 Aligned_cols=39 Identities=15% Similarity=0.236 Sum_probs=29.1
Q ss_pred HHHhcCCCCCCHHHHHHHHHhcCCCcchHHHHHHHHhhc
Q 033702 9 LAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVK 47 (113)
Q Consensus 9 ll~l~g~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L~ 47 (113)
.+-..++-.||.+++..+++..|..+....+..+++.+.
T Consensus 84 ~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d 122 (140)
T 1ggw_A 84 VFDKDATGMIGVGELRYVLTSLGEKLSNEEMDELLKGVP 122 (140)
T ss_dssp TTCSSCSSCCCHHHHHHHHHHHHSCSCHHHHHHHHHHTT
T ss_pred HhCCCCCCcEeHHHHHHHHHHcCCCCCHHHHHHHHHhcc
Confidence 333345556999999999999998888777777776654
No 49
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Probab=44.39 E-value=51 Score=20.38 Aligned_cols=41 Identities=15% Similarity=0.308 Sum_probs=31.6
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHh-cCCCcchHHHHHHHHhh
Q 033702 6 AYLLAVLGGNTSPSADDIKGILGS-VGADCEDNRLELLLSEV 46 (113)
Q Consensus 6 AYlll~l~g~~~~t~e~I~kvl~a-aGveve~~~~~~f~~~L 46 (113)
+|-.+-..++-.||.+++..++.. .|..+....+..+.+.+
T Consensus 93 ~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~ 134 (153)
T 3ox6_A 93 AFREFDTNGDGEISTSELREAMRALLGHQVGHRDIEEIIRDV 134 (153)
T ss_dssp HHHHHCTTCSSSBCHHHHHHHHHHHHSSCCCHHHHHHHHHHH
T ss_pred HHHHhCCCCCCcCcHHHHHHHHHHHhcCCCCHHHHHHHHHHh
Confidence 444444455567999999999999 89888888888777766
No 50
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Probab=43.45 E-value=54 Score=20.91 Aligned_cols=51 Identities=18% Similarity=0.300 Sum_probs=37.4
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHhcCCCcchHHHHHHHHhhc-----CCChHHHHH
Q 033702 6 AYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVK-----GKDITELIA 56 (113)
Q Consensus 6 AYlll~l~g~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L~-----gk~v~eLI~ 56 (113)
+|-.+-..++-.||.+++..++...|..+.+..+..+.+.+. ..+++|.+.
T Consensus 106 ~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~ 161 (169)
T 3qrx_A 106 AFRLFDDDNSGTITIKDLRRVAKELGENLTEEELQEMIAEADRNDDNEIDEDEFIR 161 (169)
T ss_dssp HHHHHCTTCSSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHCCSSSSCBCHHHHHH
T ss_pred HHHHhCCCCCCcCCHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCCEeHHHHHH
Confidence 344444456667999999999999999988888887777763 235666654
No 51
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=43.35 E-value=34 Score=19.47 Aligned_cols=25 Identities=16% Similarity=0.325 Sum_probs=17.7
Q ss_pred hcCCCCCCHHHHHHHHHhcCCCcch
Q 033702 12 LGGNTSPSADDIKGILGSVGADCED 36 (113)
Q Consensus 12 l~g~~~~t~e~I~kvl~aaGveve~ 36 (113)
..|+..|+.+.+.+|.+..|++++.
T Consensus 42 e~g~~~~~~~~l~~ia~~l~v~~~~ 66 (73)
T 3omt_A 42 CTNDVQPSLETLFDIAEALNVDVRE 66 (73)
T ss_dssp HTTSSCCCHHHHHHHHHHHTSCGGG
T ss_pred HcCCCCCCHHHHHHHHHHHCcCHHH
Confidence 3455567888888888887776654
No 52
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=43.03 E-value=36 Score=22.72 Aligned_cols=48 Identities=27% Similarity=0.380 Sum_probs=33.3
Q ss_pred HHHhcCCCCCCHHHHHHHHHhcCCCcchHHHHHHHHhhc--CCChHHHHH
Q 033702 9 LAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVK--GKDITELIA 56 (113)
Q Consensus 9 ll~l~g~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L~--gk~v~eLI~ 56 (113)
|+.--|...+|.++|+.-+.-.|+++++..++..+.... +.|-.++..
T Consensus 17 ~~~~~~~~~Vsae~L~eEfdefGi~~~d~VldKc~ELC~~y~lda~e~Ve 66 (101)
T 2keb_A 17 LFQGPGSMSASAQQLAEELQIFGLDCEEALIEKLVELCVQYGQNEEGMVG 66 (101)
T ss_dssp -------CCCCHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred eeeCCchhhccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCHHHHHH
Confidence 334446778999999999999999999999988887553 445455554
No 53
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=42.83 E-value=57 Score=20.50 Aligned_cols=37 Identities=19% Similarity=0.126 Sum_probs=27.3
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHhcCCCcchHHHHHH
Q 033702 6 AYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELL 42 (113)
Q Consensus 6 AYlll~l~g~~~~t~e~I~kvl~aaGveve~~~~~~f 42 (113)
||..+...+...|+.+||...++..|..-.-.-++.+
T Consensus 51 A~~~a~~~kRkTI~~~Dv~~Al~~l~F~~~i~~~~~~ 87 (93)
T 1n1j_A 51 ASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLY 87 (93)
T ss_dssp HHHHHHHTTCSSBCHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHcCCCccCHHHHHHHHHHcCcHhhHHHHHHH
Confidence 5777888898899999999999977765333333333
No 54
>1k2h_A S100A1, S-100 protein, alpha chain; non-covalent homodimer, X-type four-helix bundle, metal binding protein; NMR {Rattus norvegicus} SCOP: a.39.1.2 PDB: 1zfs_A 2k2f_A 2kbm_A 2l0p_A 2jpt_A
Probab=42.66 E-value=49 Score=19.25 Aligned_cols=53 Identities=13% Similarity=0.350 Sum_probs=38.4
Q ss_pred HHHHHHHH-hcCCC-CCCHHHHHHHHHh-----cCCCcchHHHHHHHHhhc-----CCChHHHHH
Q 033702 4 VAAYLLAV-LGGNT-SPSADDIKGILGS-----VGADCEDNRLELLLSEVK-----GKDITELIA 56 (113)
Q Consensus 4 ~aAYlll~-l~g~~-~~t~e~I~kvl~a-----aGveve~~~~~~f~~~L~-----gk~v~eLI~ 56 (113)
..+|-++- ..++- .|+.+++..++.. .|..+....+..+.+.+. ..++.+.+.
T Consensus 12 ~~~F~~~D~~d~~G~~I~~~el~~~l~~~~~~~~g~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~ 76 (93)
T 1k2h_A 12 INVFHAHSGKEGDKYKLSKKELKDLLQTELSSFLDVQKDADAVDKIMKELDENGDGEVDFQEFVV 76 (93)
T ss_dssp HHHHHHHHTTSSCCSSCCHHHHHHHHHHHTHHHHHCCCCHHHHHHHHHHHHHCTTSCCCHHHHHH
T ss_pred HHHHHHHcccCCCcCccCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHH
Confidence 34566666 46655 7999999999998 898888887777776663 146666653
No 55
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=42.57 E-value=34 Score=19.38 Aligned_cols=25 Identities=16% Similarity=0.151 Sum_probs=15.0
Q ss_pred hcCCCCCCHHHHHHHHHhcCCCcch
Q 033702 12 LGGNTSPSADDIKGILGSVGADCED 36 (113)
Q Consensus 12 l~g~~~~t~e~I~kvl~aaGveve~ 36 (113)
..|+..|+.+.+.+|.+..|++++.
T Consensus 44 e~g~~~~~~~~l~~la~~l~~~~~~ 68 (77)
T 2b5a_A 44 ERGDRNISLINIHKICAALDIPAST 68 (77)
T ss_dssp HTTCSCCBHHHHHHHHHHTTCCHHH
T ss_pred HCCCCCCCHHHHHHHHHHhCcCHHH
Confidence 3444456677777776666665443
No 56
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=42.46 E-value=30 Score=18.88 Aligned_cols=24 Identities=17% Similarity=-0.013 Sum_probs=14.8
Q ss_pred hcCCCCCCHHHHHHHHHhcCCCcc
Q 033702 12 LGGNTSPSADDIKGILGSVGADCE 35 (113)
Q Consensus 12 l~g~~~~t~e~I~kvl~aaGveve 35 (113)
..|+..|+.+.+.+|.+..|++++
T Consensus 35 e~g~~~~~~~~l~~i~~~l~~~~~ 58 (66)
T 2xi8_A 35 EKNKYNPSLQLALKIAYYLNTPLE 58 (66)
T ss_dssp HTTSCCCCHHHHHHHHHHTTSCHH
T ss_pred HcCCCCCCHHHHHHHHHHHCcCHH
Confidence 345455677777777776665543
No 57
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein, regulation, complex, calcium, EF- hand, calmodulin, ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis thaliana}
Probab=42.43 E-value=43 Score=21.42 Aligned_cols=52 Identities=13% Similarity=0.141 Sum_probs=38.6
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHhcCC-CcchHHHHHHHHhhc-----CCChHHHHH
Q 033702 5 AAYLLAVLGGNTSPSADDIKGILGSVGA-DCEDNRLELLLSEVK-----GKDITELIA 56 (113)
Q Consensus 5 aAYlll~l~g~~~~t~e~I~kvl~aaGv-eve~~~~~~f~~~L~-----gk~v~eLI~ 56 (113)
.+|-++-..++-.||.+++..++...|. .+....+..+++.+. ..++.+.+.
T Consensus 44 ~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~e~~~~~~~~D~d~dG~I~~~EF~~ 101 (135)
T 3h4s_E 44 KGFSLLADPERHLITAESLRRNSGILGIEGMSKEDAQGMVREGDLDGDGALNQTEFCV 101 (135)
T ss_dssp HHHHHHSBTTTTBBCHHHHHHHGGGGTCCCCCHHHHHHHHHHHCSSCSSSBCHHHHHH
T ss_pred HHHHHHCCCCCCcCCHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCCCCcHHHHHH
Confidence 4555565566667999999999999996 888877887777664 246677664
No 58
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=42.22 E-value=35 Score=18.72 Aligned_cols=23 Identities=9% Similarity=0.294 Sum_probs=12.9
Q ss_pred cCCCCCCHHHHHHHHHhcCCCcc
Q 033702 13 GGNTSPSADDIKGILGSVGADCE 35 (113)
Q Consensus 13 ~g~~~~t~e~I~kvl~aaGveve 35 (113)
.|+..|+.+.+.+|.+..|++++
T Consensus 40 ~g~~~~~~~~l~~i~~~l~~~~~ 62 (68)
T 2r1j_L 40 RSETEPNGENLLALSKALQCSPD 62 (68)
T ss_dssp TTSSCCBHHHHHHHHHHTTSCHH
T ss_pred cCCCCCCHHHHHHHHHHhCCCHH
Confidence 34445566666666666655443
No 59
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=42.04 E-value=33 Score=19.51 Aligned_cols=25 Identities=24% Similarity=0.616 Sum_probs=15.5
Q ss_pred hcCCC-CCCHHHHHHHHHhcCCCcch
Q 033702 12 LGGNT-SPSADDIKGILGSVGADCED 36 (113)
Q Consensus 12 l~g~~-~~t~e~I~kvl~aaGveve~ 36 (113)
..|+. .|+.+.+.+|.+..|++++.
T Consensus 41 e~g~~~~~~~~~l~~ia~~l~~~~~~ 66 (78)
T 3b7h_A 41 FEGRSKRPTITTIRKVCGTLGISVHD 66 (78)
T ss_dssp HCTTCCCCCHHHHHHHHHHHTCCHHH
T ss_pred HcCCCCCCCHHHHHHHHHHcCCCHHH
Confidence 34544 57777777777776665443
No 60
>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A
Probab=41.91 E-value=16 Score=20.95 Aligned_cols=42 Identities=24% Similarity=0.294 Sum_probs=31.4
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHhcC-CCcchHHHHHHHHhhc
Q 033702 6 AYLLAVLGGNTSPSADDIKGILGSVG-ADCEDNRLELLLSEVK 47 (113)
Q Consensus 6 AYlll~l~g~~~~t~e~I~kvl~aaG-veve~~~~~~f~~~L~ 47 (113)
+|-++-..++-.|+.+++..+|...| ..+....+..+.+.+.
T Consensus 13 ~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~D 55 (81)
T 1c7v_A 13 AFKVFDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKEAD 55 (81)
T ss_dssp HHHHHSCSGGGEECHHHHHHHSSTTTTCCCCHHHHHHHHHHHC
T ss_pred HHHHHCCCCCCcCCHHHHHHHHHHhCCCCCCHHHHHHHHHHhC
Confidence 44555555555689999999999999 8888877777777663
No 61
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=41.89 E-value=37 Score=19.16 Aligned_cols=26 Identities=15% Similarity=0.172 Sum_probs=18.3
Q ss_pred hcCCCCCCHHHHHHHHHhcCCCcchH
Q 033702 12 LGGNTSPSADDIKGILGSVGADCEDN 37 (113)
Q Consensus 12 l~g~~~~t~e~I~kvl~aaGveve~~ 37 (113)
..|+..|+.+.+.+|.+..|++++..
T Consensus 44 e~g~~~~~~~~l~~ia~~l~~~~~~l 69 (76)
T 3bs3_A 44 CSNKSQPSLDMLVKVAELLNVDPRQL 69 (76)
T ss_dssp HTTSSCCCHHHHHHHHHHHTSCGGGG
T ss_pred HcCCCCCCHHHHHHHHHHHCcCHHHH
Confidence 45555678888888888887776653
No 62
>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein, solution structure, backbone dynamic, structural genomics; NMR {Homo sapiens}
Probab=41.78 E-value=12 Score=20.72 Aligned_cols=35 Identities=14% Similarity=0.422 Sum_probs=27.1
Q ss_pred cCCCCCCHHHHHHHHHhcCCCcchHHHHHHHHhhc
Q 033702 13 GGNTSPSADDIKGILGSVGADCEDNRLELLLSEVK 47 (113)
Q Consensus 13 ~g~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L~ 47 (113)
.++-.||.+++..++...|..+....+..+.+.+.
T Consensus 18 d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d 52 (71)
T 2b1u_A 18 DGDGHITVDELRRAMAGLGQPLPQEELDAMIREAD 52 (71)
T ss_dssp SSSSEEEHHHHHHHGGGTTCSSCHHHHHHHHHHCC
T ss_pred CCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhC
Confidence 34456899999999999998888877776666653
No 63
>1k8u_A S100A6, calcyclin, CACY; calcium regulatory protein, calcium free, signaling protein; HET: MSE; 1.15A {Homo sapiens} SCOP: a.39.1.2 PDB: 1k96_A 1k9k_A 1k9p_A 1a03_A 1cnp_A 1jwd_A 2cnp_A 2jtt_A
Probab=41.49 E-value=38 Score=19.53 Aligned_cols=44 Identities=18% Similarity=0.387 Sum_probs=33.1
Q ss_pred HHHHHHHHHh-cCCC-CCCHHHHHHHHHh---cCCCcchHHHHHHHHhh
Q 033702 3 VVAAYLLAVL-GGNT-SPSADDIKGILGS---VGADCEDNRLELLLSEV 46 (113)
Q Consensus 3 y~aAYlll~l-~g~~-~~t~e~I~kvl~a---aGveve~~~~~~f~~~L 46 (113)
+..+|-.+-. .++- .|+.+++..+++. .|..+....+..+.+.+
T Consensus 12 l~~~F~~~D~~d~~G~~i~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~ 60 (90)
T 1k8u_A 12 LVAIFHKYSGREGDKHTLSKKELKELIQKELTIGSKLQDAEIARLMEDL 60 (90)
T ss_dssp HHHHHHHHHTSSSCTTEEEHHHHHHHHHHHSCCGGGTTSHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCCcCCHHHHHHHHHHhcccCCCCCHHHHHHHHHHh
Confidence 3445666663 6665 7999999999998 88887777777777666
No 64
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=41.36 E-value=40 Score=18.96 Aligned_cols=20 Identities=15% Similarity=0.051 Sum_probs=9.3
Q ss_pred hHHHHHHHHhhcCCChHHHHH
Q 033702 36 DNRLELLLSEVKGKDITELIA 56 (113)
Q Consensus 36 ~~~~~~f~~~L~gk~v~eLI~ 56 (113)
...+..+++.| |.+++.|+.
T Consensus 47 ~~~l~~ia~~l-~~~~~~l~~ 66 (76)
T 1adr_A 47 GENLLALSKAL-QCSPDYLLK 66 (76)
T ss_dssp HHHHHHHHHHT-TSCHHHHHH
T ss_pred HHHHHHHHHHH-CcCHHHHhc
Confidence 33344444433 455555553
No 65
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=41.34 E-value=51 Score=19.07 Aligned_cols=28 Identities=4% Similarity=-0.072 Sum_probs=20.5
Q ss_pred HhcCCCCCCHHHHHHHHHhcCCCcchHH
Q 033702 11 VLGGNTSPSADDIKGILGSVGADCEDNR 38 (113)
Q Consensus 11 ~l~g~~~~t~e~I~kvl~aaGveve~~~ 38 (113)
+..|+..|+.+.+.+|.+..|++++...
T Consensus 44 ~e~g~~~~~~~~l~~ia~~l~v~~~~l~ 71 (82)
T 3s8q_A 44 IERNSRNLTIKSLELIMKGLEVSDVVFF 71 (82)
T ss_dssp HHTTCCCCBHHHHHHHHHHTTCCHHHHH
T ss_pred HHCCCCCCCHHHHHHHHHHHCcCHHHHh
Confidence 3456667888888888888888776543
No 66
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle, myosin subfragment 2, heavy meromyosin, essential light chain; 20.00A {Avicularia avicularia}
Probab=41.04 E-value=48 Score=22.36 Aligned_cols=52 Identities=23% Similarity=0.417 Sum_probs=38.0
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHhcCCCcchHHHHHHHHhhcC-CChHHHHH
Q 033702 5 AAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKG-KDITELIA 56 (113)
Q Consensus 5 aAYlll~l~g~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L~g-k~v~eLI~ 56 (113)
..|-.+-..++-.||.+++..+|...|..+....+..+...+.| .++.+.+.
T Consensus 61 ~~F~~~D~d~~G~i~~~el~~~l~~lg~~~~~~~~~~l~~~~~g~i~~~eF~~ 113 (196)
T 3dtp_E 61 EAFQLIDQDKDGFISKNDIRATFDSLGRLCTEQELDSMVAEAPGPINFTMFLT 113 (196)
T ss_dssp HHHHHHCCSCSSBCCHHHHHHHHHTTSCCCCHHHHHHHHTTSSSCCBHHHHHH
T ss_pred HHHHHHCCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHccCCCcHHHHHH
Confidence 34555555556679999999999999998888887777766644 45666664
No 67
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y 1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y 3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y 2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Probab=40.65 E-value=64 Score=20.35 Aligned_cols=52 Identities=25% Similarity=0.385 Sum_probs=35.3
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHhcCCCcchHHHHHHHHhhcC-CChHHHHH
Q 033702 5 AAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKG-KDITELIA 56 (113)
Q Consensus 5 aAYlll~l~g~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L~g-k~v~eLI~ 56 (113)
..|-.+-..++-.||.+++..+|...|..+....+..+.+.-.| .++.+.+.
T Consensus 22 ~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~g~i~~~eF~~ 74 (156)
T 1wdc_B 22 EAFSMIDVDRDGFVSKEDIKAISEQLGRAPDDKELTAMLKEAPGPLNFTMFLS 74 (156)
T ss_dssp HHHHHHCTTCSSSCCHHHHHHHHHHHSSCCCHHHHHHHHTTSSSCCCHHHHHH
T ss_pred HHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHhCCCcCcHHHHHH
Confidence 34455555566679999999999999988877766665554332 45666654
No 68
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=40.56 E-value=47 Score=19.90 Aligned_cols=29 Identities=14% Similarity=0.190 Sum_probs=22.1
Q ss_pred HhcCCCCCCHHHHHHHHHhcCCCcchHHHH
Q 033702 11 VLGGNTSPSADDIKGILGSVGADCEDNRLE 40 (113)
Q Consensus 11 ~l~g~~~~t~e~I~kvl~aaGveve~~~~~ 40 (113)
+..|+..|+.+.+.+|.+..|++++ +|+.
T Consensus 41 ~e~g~~~~~~~~~~~i~~~l~v~~~-~~l~ 69 (94)
T 2ict_A 41 LLTGKAALTPEMAIKLSVVIGSSPQ-MWLN 69 (94)
T ss_dssp HHHTSSCCCHHHHHHHHHHTCSCHH-HHHH
T ss_pred HHcCCCCCCHHHHHHHHHHHCcCHH-HHHH
Confidence 3456667999999999999998774 4654
No 69
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=40.50 E-value=51 Score=20.26 Aligned_cols=48 Identities=21% Similarity=0.299 Sum_probs=36.5
Q ss_pred CCCCHHHHHHHHHhcCC-CcchHHHHHHHHhhcCCChHHHHHhhhhhhcc
Q 033702 16 TSPSADDIKGILGSVGA-DCEDNRLELLLSEVKGKDITELIASGREKLAS 64 (113)
Q Consensus 16 ~~~t~e~I~kvl~aaGv-eve~~~~~~f~~~L~gk~v~eLI~~G~~kl~~ 64 (113)
..++.+.|+.|.+++|+ .+.+.....++..++- -+.+++.+..+.|.+
T Consensus 5 s~lp~~~v~~iaes~Gi~~lsddaa~~LA~dvEy-r~~eI~qeA~kfmrH 53 (70)
T 1taf_B 5 SSISAESMKVIAESIGVGSLSDDAAKELAEDVSI-KLKRIVQDAAKFMNH 53 (70)
T ss_dssp CCCCHHHHHHHHHHTTCCCBCHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 45789999999999999 7999999999887643 355666665554443
No 70
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=40.21 E-value=62 Score=20.10 Aligned_cols=28 Identities=4% Similarity=-0.072 Sum_probs=19.3
Q ss_pred HhcCCCCCCHHHHHHHHHhcCCCcchHH
Q 033702 11 VLGGNTSPSADDIKGILGSVGADCEDNR 38 (113)
Q Consensus 11 ~l~g~~~~t~e~I~kvl~aaGveve~~~ 38 (113)
+..|+..|+.+.|.+|.+..|++++...
T Consensus 61 iE~G~~~ps~~~l~~ia~~l~v~~~~l~ 88 (99)
T 3g5g_A 61 IERNSRNLTIKSLELIMKGLEVSDVVFF 88 (99)
T ss_dssp HHTTCSCCBHHHHHHHHHHTTCCHHHHH
T ss_pred HHCCCCCCCHHHHHHHHHHHCcCHHHHh
Confidence 3455566788888888888877765543
No 71
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=40.16 E-value=51 Score=20.95 Aligned_cols=32 Identities=28% Similarity=0.278 Sum_probs=24.2
Q ss_pred HHHHhcCCCCCCHHHHHHHHHhcCCCcchHHHH
Q 033702 8 LLAVLGGNTSPSADDIKGILGSVGADCEDNRLE 40 (113)
Q Consensus 8 lll~l~g~~~~t~e~I~kvl~aaGveve~~~~~ 40 (113)
+--+..|+..||.+.+.+|.+..|+.++ +|+.
T Consensus 44 is~ie~G~~~~s~~~~~kla~~lgvs~~-~ll~ 75 (104)
T 3trb_A 44 VTAILNGARSITADTALRLAKFFGTTPE-FWLN 75 (104)
T ss_dssp HHHHHTTSSCCCHHHHHHHHHHHTCCHH-HHHH
T ss_pred HHHHHcCCCCCCHHHHHHHHHHHCcCHH-HHhC
Confidence 3344577778999999999999999864 4543
No 72
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Probab=40.11 E-value=33 Score=21.89 Aligned_cols=51 Identities=16% Similarity=0.337 Sum_probs=36.0
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHhcCCCcchHHHHHHHH--hhc----C-CChHHHHH
Q 033702 6 AYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLS--EVK----G-KDITELIA 56 (113)
Q Consensus 6 AYlll~l~g~~~~t~e~I~kvl~aaGveve~~~~~~f~~--~L~----g-k~v~eLI~ 56 (113)
++-.+-..++-.||.+++..+|...|..+....+..+++ .+. | .++.+.+.
T Consensus 90 ~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~ 147 (159)
T 2ovk_C 90 AFKTFDREGQGLISSAEIRNVLKMLGERITEDQCNDIFTFCDIREDIDGNIKYEDLMK 147 (159)
T ss_dssp HHHHTCTTSSSEECHHHHHHHHHHSSSCCCHHHHHHHHHHTTCCCCTTCCEEHHHHHH
T ss_pred HHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCCCCCCcEeHHHHHH
Confidence 344444455567999999999999999888888887777 432 1 35666654
No 73
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=39.56 E-value=37 Score=21.04 Aligned_cols=38 Identities=11% Similarity=0.083 Sum_probs=28.7
Q ss_pred HHhcCCCCCCHHHHHHHHHhcCCCcchHHHHHHHHhhc
Q 033702 10 AVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVK 47 (113)
Q Consensus 10 l~l~g~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L~ 47 (113)
+-..++-.||.+++..++...|..+....+..+.+.+.
T Consensus 88 ~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d 125 (142)
T 2bl0_C 88 FDPEGTGYIPKAALQDALLNLGDRLKPHEFAEFLGITE 125 (142)
T ss_dssp TCCSSCSCEEHHHHHHHHHHSSSCCCHHHHHHHHHHHC
T ss_pred HCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHhC
Confidence 33345556899999999999998888877777776664
No 74
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=39.46 E-value=54 Score=18.96 Aligned_cols=25 Identities=8% Similarity=0.046 Sum_probs=16.3
Q ss_pred hcCCCCCCHHHHHHHHHhcCCCcch
Q 033702 12 LGGNTSPSADDIKGILGSVGADCED 36 (113)
Q Consensus 12 l~g~~~~t~e~I~kvl~aaGveve~ 36 (113)
..|+..|+.+.+.+|.+..|++++.
T Consensus 48 e~g~~~~~~~~l~~l~~~l~~~~~~ 72 (83)
T 3f6w_A 48 ENAERRLDVIEFMDFCRGIGTDPYA 72 (83)
T ss_dssp HTTSSCCCHHHHHHHHHHHTCCHHH
T ss_pred HCCCCCCCHHHHHHHHHHcCCCHHH
Confidence 3455567777777777777766544
No 75
>3iz5_s 60S acidic ribosomal protein P0 (L10P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_s
Probab=39.38 E-value=6.3 Score=31.01 Aligned_cols=14 Identities=50% Similarity=0.582 Sum_probs=0.0
Q ss_pred hhhhhhhhhccccc
Q 033702 90 EAKKEEKVEEKEES 103 (113)
Q Consensus 90 ~~~~e~k~eeeeE~ 103 (113)
++++++++||++++
T Consensus 299 ~~~~~e~~ee~d~d 312 (319)
T 3iz5_s 299 EEKKEEPEEESDGD 312 (319)
T ss_dssp --------------
T ss_pred cccccccccccccc
Confidence 44444444555544
No 76
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding, phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8
Probab=39.14 E-value=51 Score=21.29 Aligned_cols=40 Identities=5% Similarity=0.125 Sum_probs=30.7
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHhcCCCcchHHHHHHHHhh
Q 033702 7 YLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEV 46 (113)
Q Consensus 7 Ylll~l~g~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L 46 (113)
+-.+-..++-.||.+++..++...|..+.+..+..+.+.+
T Consensus 78 F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~ 117 (167)
T 1gjy_A 78 FISFDSDRSGTVDPQELQKALTTMGFRLNPQTVNSIAKRY 117 (167)
T ss_dssp HHHHCTTCCSEECHHHHHHHHHTTTCCCCHHHHHHHHHHT
T ss_pred HHHhCCCCCCcCCHHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 4444445556799999999999999888887777777766
No 77
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free energy, dynamic behaviour, cytoskeleton, metal binding; 2.50A {Entamoeba histolytica}
Probab=38.83 E-value=23 Score=19.20 Aligned_cols=40 Identities=15% Similarity=0.287 Sum_probs=29.0
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHhcCCCcchHHHHHHHHhh
Q 033702 7 YLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEV 46 (113)
Q Consensus 7 Ylll~l~g~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L 46 (113)
+-.+-..++-.||.+++..+++..|..+....+..+.+.+
T Consensus 6 F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 45 (66)
T 3li6_A 6 FKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSI 45 (66)
T ss_dssp HHHHCTTCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCCcccHHHHHHHHHHccCCCcHHHHHHHHHHH
Confidence 3444445566799999999999998777666666666655
No 78
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=38.51 E-value=34 Score=19.75 Aligned_cols=37 Identities=19% Similarity=0.116 Sum_probs=17.9
Q ss_pred CCHHHHHHHHHhcCCCcchHHHHHHHHhhcCCChHHHHH
Q 033702 18 PSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIA 56 (113)
Q Consensus 18 ~t~e~I~kvl~aaGveve~~~~~~f~~~L~gk~v~eLI~ 56 (113)
+|..-|.++.+-- ..+....+..+++.| |.++.+|+.
T Consensus 27 is~~~i~~~e~g~-~~p~~~~l~~ia~~l-~v~~~~l~~ 63 (77)
T 2k9q_A 27 ISRQQLCNIEQSE-TAPVVVKYIAFLRSK-GVDLNALFD 63 (77)
T ss_dssp SCHHHHHHHHTCC-SCCHHHHHHHHHHHT-TCCHHHHHH
T ss_pred CCHHHHHHHHcCC-CCCCHHHHHHHHHHh-CcCHHHHhC
Confidence 4444455544321 223334444555544 566667765
No 79
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=38.50 E-value=49 Score=20.56 Aligned_cols=25 Identities=4% Similarity=0.089 Sum_probs=20.5
Q ss_pred HhcCCCCCCHHHHHHHHHhcCCCcc
Q 033702 11 VLGGNTSPSADDIKGILGSVGADCE 35 (113)
Q Consensus 11 ~l~g~~~~t~e~I~kvl~aaGveve 35 (113)
+..|+..|+.+.+.+|.+..|++++
T Consensus 44 ~e~g~~~~~~~~l~~la~~l~~~~~ 68 (113)
T 2eby_A 44 LINNNRKLTTEMAFRLAKVFDTTVD 68 (113)
T ss_dssp HHTTSSCCCHHHHHHHHHHHTCCHH
T ss_pred HHcCCCCCCHHHHHHHHHHHCcCHH
Confidence 3556667899999999999998877
No 80
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding, phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8
Probab=38.30 E-value=63 Score=20.84 Aligned_cols=53 Identities=19% Similarity=0.276 Sum_probs=35.4
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHhcCC-----CcchHHHHHHHHhhc-----CCChHHHH
Q 033702 3 VVAAYLLAVLGGNTSPSADDIKGILGSVGA-----DCEDNRLELLLSEVK-----GKDITELI 55 (113)
Q Consensus 3 y~aAYlll~l~g~~~~t~e~I~kvl~aaGv-----eve~~~~~~f~~~L~-----gk~v~eLI 55 (113)
-+-++..+-..++-.||.+++..++...|. .+....+..+.+.+. ..+..+.+
T Consensus 3 ~~~~F~~~D~d~~G~i~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~~~~g~i~~~eF~ 65 (167)
T 1gjy_A 3 PLYGYFASVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFK 65 (167)
T ss_dssp TTHHHHHHHCCTTSCBCHHHHHHHHHHHTCSTTSCCCCHHHHHHHHHHHCTTCCSCBCHHHHH
T ss_pred HHHHHHHHHcCCCCcCCHHHHHHHHHhhcccCCCCCcCHHHHHHHHHHHCCCCCCcCCHHHHH
Confidence 344566677677677999999999999887 455555666555552 14555554
No 81
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=38.16 E-value=77 Score=20.81 Aligned_cols=52 Identities=21% Similarity=0.364 Sum_probs=36.2
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHhcCCCcchHHHHHHHHhhcC-CChHHHHH
Q 033702 5 AAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKG-KDITELIA 56 (113)
Q Consensus 5 aAYlll~l~g~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L~g-k~v~eLI~ 56 (113)
-++-++-..|+-.||.+++..+|++.|..+.......+.....+ .+..+.+.
T Consensus 20 ~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~~~~~~~~~~~~~~~i~f~ef~~ 72 (153)
T 3i5g_B 20 EAFTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAMLKECPGQLNFTAFLT 72 (153)
T ss_dssp HHHHHHCCSTTSCCCHHHHHHHHHHTTSCCCHHHHHHHHHTSSSCCCSHHHHH
T ss_pred HHHHHHCCCCCCeEcHHHHHHHHHHcCCCccHHHHHHHHHhccCCccHHHHHH
Confidence 35556655666679999999999999998887777766654433 34455553
No 82
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP; 2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A 2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A* 1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A* 3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Probab=37.85 E-value=66 Score=20.22 Aligned_cols=51 Identities=24% Similarity=0.426 Sum_probs=36.2
Q ss_pred HHHHHHhcC-CCCCCHHHHHHHHHhcCCCcchHHHHHHHHhhc-----CCChHHHHH
Q 033702 6 AYLLAVLGG-NTSPSADDIKGILGSVGADCEDNRLELLLSEVK-----GKDITELIA 56 (113)
Q Consensus 6 AYlll~l~g-~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L~-----gk~v~eLI~ 56 (113)
.|-.+-..+ +-.||.+++..+|...|..+....+..+.+.+. ..+..+.+.
T Consensus 23 ~F~~~D~~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~eF~~ 79 (161)
T 1dtl_A 23 AFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLV 79 (161)
T ss_dssp HHHHHTTTCGGGSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHCTTSSSSBCHHHHHH
T ss_pred HHHHHcCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHH
Confidence 344444445 556899999999999998888877777777663 246666664
No 83
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP: a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A 1rk9_A 1g33_A
Probab=37.45 E-value=47 Score=19.85 Aligned_cols=41 Identities=12% Similarity=0.147 Sum_probs=29.3
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHhc---CCCcchHHHHHHHHhh
Q 033702 6 AYLLAVLGGNTSPSADDIKGILGSV---GADCEDNRLELLLSEV 46 (113)
Q Consensus 6 AYlll~l~g~~~~t~e~I~kvl~aa---Gveve~~~~~~f~~~L 46 (113)
+|-++-..++-.||.+++..++... |..+....+..+.+.+
T Consensus 46 ~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~ 89 (109)
T 1rwy_A 46 VFHILDKDKSGFIEEDELGSILKGFSSDARDLSAKETKTLMAAG 89 (109)
T ss_dssp HHHHHSTTCSSEECHHHHHTHHHHHCTTCCCCCHHHHHHHHHHH
T ss_pred HHHHHCCCCCCeEcHHHHHHHHHHHhccCCCCCHHHHHHHHHHH
Confidence 4445555555568999999999988 6777777776666655
No 84
>3r1f_A ESX-1 secretion-associated regulator ESPR; helix-turn-helix, transcription factor, helix-turn-helix transcription factor; 2.50A {Mycobacterium tuberculosis}
Probab=37.27 E-value=38 Score=22.72 Aligned_cols=34 Identities=18% Similarity=0.217 Sum_probs=26.4
Q ss_pred HHHHHHhcCCC-CCCHHHHHHHHHhcCCCcchHHH
Q 033702 6 AYLLAVLGGNT-SPSADDIKGILGSVGADCEDNRL 39 (113)
Q Consensus 6 AYlll~l~g~~-~~t~e~I~kvl~aaGveve~~~~ 39 (113)
.|+--+-.|+. .||.+.|.+|.+..||.++-++-
T Consensus 46 s~is~~E~G~r~~Ps~~~l~~iA~~f~V~~~yl~~ 80 (135)
T 3r1f_A 46 PYLSQLRSGNRTNPSGATMAALANFFRIKAAYFTD 80 (135)
T ss_dssp HHHHHHHHTSSCCCCHHHHHHHHHHHTSCTHHHHC
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHhCCCHHHHcC
Confidence 45555566754 79999999999999999876553
No 85
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Probab=37.22 E-value=65 Score=20.56 Aligned_cols=41 Identities=12% Similarity=0.168 Sum_probs=30.6
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHhcCCCcchHHHHHHHHhh
Q 033702 6 AYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEV 46 (113)
Q Consensus 6 AYlll~l~g~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L 46 (113)
+|-.+-..++-.||.+++..+|...|..+.+..+..+++.+
T Consensus 100 ~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~ 140 (166)
T 2mys_B 100 AFKVLDPDGKGSIKKSFLEELLTTGGGRFTPEEIKNMWAAF 140 (166)
T ss_pred HHHHhCCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhc
Confidence 34444455656799999999999999888777777776665
No 86
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A 2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A 1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Probab=37.22 E-value=44 Score=20.00 Aligned_cols=42 Identities=14% Similarity=0.154 Sum_probs=29.8
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHhc---CCCcchHHHHHHHHhh
Q 033702 5 AAYLLAVLGGNTSPSADDIKGILGSV---GADCEDNRLELLLSEV 46 (113)
Q Consensus 5 aAYlll~l~g~~~~t~e~I~kvl~aa---Gveve~~~~~~f~~~L 46 (113)
.+|-++-..++-.||.+++..++... |..+....+..+.+.+
T Consensus 45 ~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~ 89 (108)
T 2pvb_A 45 KAFYVIDQDKSGFIEEDELKLFLQNFSPSARALTDAETKAFLADG 89 (108)
T ss_dssp HHHHHHCTTCSSSBCHHHHHTGGGGTCTTSCCCCHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCcCCHHHHHHHHHHHhccCCCCCHHHHHHHHHHh
Confidence 34455555555678999999999988 7777777776666655
No 87
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP: a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A 1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A 2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Probab=36.97 E-value=76 Score=19.85 Aligned_cols=41 Identities=12% Similarity=0.252 Sum_probs=31.1
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHhcCCCcchHHHHHHHHhh
Q 033702 6 AYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEV 46 (113)
Q Consensus 6 AYlll~l~g~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L 46 (113)
+|-.+-..++-.||.+++..++...|..+....+..+.+.+
T Consensus 101 ~F~~~D~d~~G~I~~~e~~~~l~~~g~~~~~~~~~~~~~~~ 141 (162)
T 1top_A 101 CFRIFDKNADGFIDIEELGEILRATGEHVTEEDIEDLMKDS 141 (162)
T ss_dssp HHHHHCTTCSSCBCHHHHHHHHHTTTCCCCHHHHHHHHHHH
T ss_pred HHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 34444445566799999999999999888877777777766
No 88
>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand, helix-loop- helix, nervous system, metal binding protein; NMR {Haemopis marmorata} PDB: 1yx8_A
Probab=36.84 E-value=58 Score=18.39 Aligned_cols=43 Identities=12% Similarity=0.166 Sum_probs=30.8
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHhcC--CCcchHHHHH----HHHhh
Q 033702 4 VAAYLLAVLGGNTSPSADDIKGILGSVG--ADCEDNRLEL----LLSEV 46 (113)
Q Consensus 4 ~aAYlll~l~g~~~~t~e~I~kvl~aaG--veve~~~~~~----f~~~L 46 (113)
-.+|-++-..++-.||.+++..++...| ..+.+..+.. +.+.+
T Consensus 10 ~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (83)
T 1yx7_A 10 EAAFKKLDANGDGYVTALELQTFMVTLDAYKALSKDKVKEASAKLIKMA 58 (83)
T ss_dssp HHHHHHHSSSCSSSCSHHHHHHHHHHHTTCTTTTTTTTHHHHHHHHTTT
T ss_pred HHHHHHHCCCCCCcCcHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHh
Confidence 3455666666666799999999999999 6666665555 55544
No 89
>2lnk_A Protein S100-A4; EF-hand, calcium binding, all alpha, metal binding protein, binding protein; NMR {Homo sapiens} PDB: 3c1v_A
Probab=36.78 E-value=66 Score=20.83 Aligned_cols=54 Identities=17% Similarity=0.335 Sum_probs=36.7
Q ss_pred HHHHHHHHH-hcCCC-CCCHHHHHHHHHh-----cCCCcchHHHHHHHHhhc-----CCChHHHHH
Q 033702 3 VVAAYLLAV-LGGNT-SPSADDIKGILGS-----VGADCEDNRLELLLSEVK-----GKDITELIA 56 (113)
Q Consensus 3 y~aAYlll~-l~g~~-~~t~e~I~kvl~a-----aGveve~~~~~~f~~~L~-----gk~v~eLI~ 56 (113)
+.-+|-++- ..|+- .||.++|+.+|.. .|..+....+..+++.+. ..++.|.+.
T Consensus 24 l~~aF~~fD~~dgdGG~Is~~EL~~~l~~~l~~~lg~~~t~~ev~~li~~~D~dgdG~Idf~EF~~ 89 (113)
T 2lnk_A 24 MVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCV 89 (113)
T ss_dssp HHHHHHHTTTTTSCTTCBCHHHHHHHHHHHCGGGGTTCCCTTHHHHHHHHHCSSSSSCBCHHHHHH
T ss_pred HHHHHHHHcccCCCCCEECHHHHHHHHHHHcchhcCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHH
Confidence 345566665 34443 6999999999987 666666677777777663 156777664
No 90
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=36.20 E-value=58 Score=19.23 Aligned_cols=41 Identities=2% Similarity=0.100 Sum_probs=28.3
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHhcCCCcchHHHHHHHHhh
Q 033702 4 VAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEV 46 (113)
Q Consensus 4 ~aAYlll~l~g~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L 46 (113)
..+|-++-..++-.|+.+++..+|...|+ ....+..+.+.+
T Consensus 30 ~~~F~~~D~d~~G~I~~~El~~~l~~~g~--~~~~~~~~~~~~ 70 (91)
T 2pmy_A 30 RSVFAACDANRSGRLEREEFRALCTELRV--RPADAEAVFQRL 70 (91)
T ss_dssp HHHHHHHCTTCSSSEEHHHHHHHHHHTTC--CHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCCcHHHHHHHHHHcCc--CHHHHHHHHHHh
Confidence 34555666666667999999999999983 444555555555
No 91
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15, EPS15; EH domain, EF-hand, solution structure, S100 protein; NMR {Mus musculus} SCOP: a.39.1.6
Probab=36.18 E-value=56 Score=20.23 Aligned_cols=53 Identities=19% Similarity=0.106 Sum_probs=36.7
Q ss_pred hHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCcchHHHHHHHHhhc--C---CChHHHHH
Q 033702 2 KVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVK--G---KDITELIA 56 (113)
Q Consensus 2 ~y~aAYlll~l~g~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L~--g---k~v~eLI~ 56 (113)
+|..+|-++-..|+-.||.+++..+++..|+. ...+..+.+.+. + .+.+|.+.
T Consensus 12 ~~~~~F~~~D~d~dG~Is~~el~~~l~~~~l~--~~~l~~i~~~~D~d~dG~i~~~EF~~ 69 (99)
T 1qjt_A 12 VYEKYYRQVEAGNTGRVLALDAAAFLKKSGLP--DLILGKIWDLADTDGKGVLSKQEFFV 69 (99)
T ss_dssp HHHHHHHHHCCTTSSCCCSHHHHHHHHTSSSC--HHHHHHHHHHHCCSSSSSCCSHHHHH
T ss_pred HHHHHHHHHCCCCCCcCCHHHHHHHHHHcCCC--HHHHHHHHHHHCCCCCCcCCHHHHHH
Confidence 46677777777776679999999999999864 444555555443 1 46677664
No 92
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=36.11 E-value=58 Score=19.22 Aligned_cols=29 Identities=10% Similarity=0.061 Sum_probs=21.4
Q ss_pred HhcCCCCCCHHHHHHHHHhcCCCcchHHH
Q 033702 11 VLGGNTSPSADDIKGILGSVGADCEDNRL 39 (113)
Q Consensus 11 ~l~g~~~~t~e~I~kvl~aaGveve~~~~ 39 (113)
...|+..|+.+.+.+|.+..|++++..+.
T Consensus 50 ~e~g~~~~~~~~l~~ia~~l~v~~~~l~~ 78 (92)
T 1lmb_3 50 LFNGINALNAYNAALLAKILKVSVEEFSP 78 (92)
T ss_dssp HHTTSSCCCHHHHHHHHHHHTSCGGGTCH
T ss_pred HHcCCCCCCHHHHHHHHHHHCCCHHHHhh
Confidence 34566678888888888888887766543
No 93
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A {Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A 1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D* 2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A 1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Probab=35.96 E-value=58 Score=20.47 Aligned_cols=41 Identities=20% Similarity=0.391 Sum_probs=28.1
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHhcCCCcchHHHHHHHHhh
Q 033702 6 AYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEV 46 (113)
Q Consensus 6 AYlll~l~g~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L 46 (113)
++.++-..++-.||.+++..+|+..|..+....+..+.+.+
T Consensus 15 ~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~~~~ 55 (148)
T 1exr_A 15 AFALFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEV 55 (148)
T ss_dssp HHHHHCTTCSSEECHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 44444445555688888888888888877766666555554
No 94
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=35.94 E-value=54 Score=19.87 Aligned_cols=43 Identities=16% Similarity=0.074 Sum_probs=30.1
Q ss_pred hHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCcchHHHHHHHHhh
Q 033702 2 KVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEV 46 (113)
Q Consensus 2 ~y~aAYlll~l~g~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L 46 (113)
+|..+|-++-..++-.||.+++..++...|+. ...+..+.+.+
T Consensus 11 ~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~--~~~~~~i~~~~ 53 (95)
T 1c07_A 11 KYDEIFLKTDKDMDGFVSGLEVREIFLKTGLP--STLLAHIWSLC 53 (95)
T ss_dssp HHHHHHHHHCTTCSSEECHHHHHHHHHTTTCC--HHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCcEeHHHHHHHHHHcCCC--HHHHHHHHHHH
Confidence 35667777776776679999999999998854 33444444444
No 95
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4 PDB: 2pas_A 3pat_A
Probab=35.80 E-value=48 Score=19.86 Aligned_cols=41 Identities=17% Similarity=0.209 Sum_probs=29.4
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHhc---CCCcchHHHHHHHHhh
Q 033702 6 AYLLAVLGGNTSPSADDIKGILGSV---GADCEDNRLELLLSEV 46 (113)
Q Consensus 6 AYlll~l~g~~~~t~e~I~kvl~aa---Gveve~~~~~~f~~~L 46 (113)
++-++-..++-.||.+++.++|... |..+....+..+.+.+
T Consensus 47 ~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~ 90 (110)
T 1pva_A 47 VFKAIDADASGFIEEEELKFVLKSFAADGRDLTDAETKAFLKAA 90 (110)
T ss_dssp HHHHHCTTCSSSBCHHHHHTGGGGTCTTCCCCCHHHHHHHHHHH
T ss_pred HHHHhCCCCCCcCcHHHHHHHHHHHhhcCCCCCHHHHHHHHHHh
Confidence 4445555555678999999999988 6777777777666665
No 96
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=35.72 E-value=61 Score=20.32 Aligned_cols=51 Identities=12% Similarity=0.173 Sum_probs=34.8
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHhcCCCcchHHHHHHHHhhcC-----CChHHHHH
Q 033702 6 AYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKG-----KDITELIA 56 (113)
Q Consensus 6 AYlll~l~g~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L~g-----k~v~eLI~ 56 (113)
.|-.+-..++-.||.+++..+|...|..+....+..+.+.+.. .++.+.+.
T Consensus 28 ~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~ 83 (161)
T 3fwb_A 28 AFSLFDMNNDGFLDYHELKVAMKALGFELPKREILDLIDEYDSEGRHLMKYDDFYI 83 (161)
T ss_dssp HHHHHCTTSSSEECHHHHHHHHHHTTCCCCHHHHHHHHHHHCTTSSSCEEHHHHHH
T ss_pred HHHHHCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHhCcCCCCeEeHHHHHH
Confidence 3444444555568999999999999888887777777766622 44566554
No 97
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=35.68 E-value=48 Score=20.47 Aligned_cols=51 Identities=14% Similarity=0.232 Sum_probs=33.9
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHhcCCCcchHHHHHHHHhhcC-----CChHHHHH
Q 033702 6 AYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKG-----KDITELIA 56 (113)
Q Consensus 6 AYlll~l~g~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L~g-----k~v~eLI~ 56 (113)
.|-.+-..++-.||.+++..+|...|..+....+..+.+.+.. .++.+.+.
T Consensus 11 ~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~ 66 (142)
T 2bl0_C 11 AFELFDSERTGFITKEGLQTVLKQFGVRVEPAAFNEMFNEADATGNGKIQFPEFLS 66 (142)
T ss_dssp HHHHHCTTCSSEEEHHHHHHHHHHHTCCCCHHHHHHHHHHHCTTCSSEEEHHHHHH
T ss_pred HHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCcCCCCeeeHHHHHH
Confidence 4444444555568888888888888888877777766666531 35556554
No 98
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Probab=35.28 E-value=54 Score=20.66 Aligned_cols=42 Identities=24% Similarity=0.349 Sum_probs=31.6
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHhcCCCcchHHHHHHHHhh
Q 033702 5 AAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEV 46 (113)
Q Consensus 5 aAYlll~l~g~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L 46 (113)
.+|-.+-..++-.||.+++..++...|..+....+..+++.+
T Consensus 95 ~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~ 136 (158)
T 2jnf_A 95 EAFRLYDKEGNGYISTDVMREILAELDETLSSEDLDAMIDEI 136 (158)
T ss_dssp HHHHHHCSSSSSSEEHHHHHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCeEcHHHHHHHHHHhCCcCCHHHHHHHHHHh
Confidence 344444445555799999999999999888877777777766
No 99
>3qwg_A ESX-1 secretion-associated regulator ESPR; N-terminal helix-turn-helix motif, transcription factor, transcription; 1.99A {Mycobacterium tuberculosis} PDB: 3qf3_A 3qyx_A
Probab=35.14 E-value=46 Score=22.01 Aligned_cols=35 Identities=17% Similarity=0.236 Sum_probs=26.5
Q ss_pred HHHHHHhcCCC-CCCHHHHHHHHHhcCCCcchHHHH
Q 033702 6 AYLLAVLGGNT-SPSADDIKGILGSVGADCEDNRLE 40 (113)
Q Consensus 6 AYlll~l~g~~-~~t~e~I~kvl~aaGveve~~~~~ 40 (113)
.|+--+-.|+. .||.+.|++|.+..||.++-+...
T Consensus 44 s~is~iE~G~r~~Ps~~~l~~iA~~f~V~~~yl~~~ 79 (123)
T 3qwg_A 44 PYLSQLRSGNRTNPSGATMAALANFFRIKAAYFTDD 79 (123)
T ss_dssp HHHHHHHHTSSCCCCHHHHHHHHHHTTSCTHHHHCH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHhCCCHHHHcCC
Confidence 45555566664 799999999999999998765543
No 100
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP: a.39.1.4
Probab=35.05 E-value=51 Score=19.75 Aligned_cols=42 Identities=14% Similarity=0.126 Sum_probs=29.6
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHhc---CCCcchHHHHHHHHhh
Q 033702 5 AAYLLAVLGGNTSPSADDIKGILGSV---GADCEDNRLELLLSEV 46 (113)
Q Consensus 5 aAYlll~l~g~~~~t~e~I~kvl~aa---Gveve~~~~~~f~~~L 46 (113)
.+|-++-..++-.||.+++..++... |..+....+..+.+.+
T Consensus 46 ~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~ 90 (109)
T 1bu3_A 46 KAFFVIDQDKSGFIEEDELKLFLQVFSAGARALTDAETKAFLKAG 90 (109)
T ss_dssp HHHHHHCTTCSSSEEHHHHHTHHHHHSTTCCCCCHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCcCcHHHHHHHHHHHcccCCCCCHHHHHHHHHHh
Confidence 34455555555668999999999988 6777777776666655
No 101
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=34.91 E-value=40 Score=20.82 Aligned_cols=42 Identities=21% Similarity=0.321 Sum_probs=31.6
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHhcCCCcchHHHHHHHHhhc
Q 033702 6 AYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVK 47 (113)
Q Consensus 6 AYlll~l~g~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L~ 47 (113)
+|-.+-..++-.||.+++..+|...|..+....+..+.+.+.
T Consensus 81 ~F~~~D~d~~G~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~d 122 (145)
T 2bl0_B 81 AFRALDKEGNGTIQEAELRQLLLNLGDALTSSEVEELMKEVS 122 (145)
T ss_dssp HHHHHCSSSSSEEEHHHHHHHHHHSSSCCCHHHHHHHHTTCC
T ss_pred HHHHhCCCCCCeEcHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 344444455556999999999999998888888887777664
No 102
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB: 2jc2_A
Probab=34.52 E-value=45 Score=22.39 Aligned_cols=35 Identities=6% Similarity=0.134 Sum_probs=28.3
Q ss_pred hcCCCCCCHHHHHHHHHhcCCCcchHHHHHHHHhh
Q 033702 12 LGGNTSPSADDIKGILGSVGADCEDNRLELLLSEV 46 (113)
Q Consensus 12 l~g~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L 46 (113)
..++-.||.+++..+|+..|..+....+..+++.+
T Consensus 114 ~d~~G~I~~~el~~~l~~~g~~~~~~~~~~l~~~~ 148 (198)
T 1juo_A 114 TDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRY 148 (198)
T ss_dssp TTCCSEECHHHHHHHHHHTTCCCCHHHHHHHHHHT
T ss_pred CCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 34555699999999999999888888887777766
No 103
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation, calcium, metal binding protein; 1.95A {Gallus gallus} SCOP: a.39.1.4 PDB: 2kqy_A
Probab=34.36 E-value=52 Score=19.72 Aligned_cols=41 Identities=5% Similarity=0.004 Sum_probs=29.2
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHhc---CCCcchHHHHHHHHhh
Q 033702 6 AYLLAVLGGNTSPSADDIKGILGSV---GADCEDNRLELLLSEV 46 (113)
Q Consensus 6 AYlll~l~g~~~~t~e~I~kvl~aa---Gveve~~~~~~f~~~L 46 (113)
+|-++-..++-.||.+++..++... |..+....+..+.+.+
T Consensus 47 ~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~ 90 (109)
T 3fs7_A 47 VFGILDQDKSGFIEEEELQLFLKNFSSSARVLTSAETKAFLAAG 90 (109)
T ss_dssp HHHHHSTTCSSSBCHHHHHTTGGGTCTTSCCCCHHHHHHHHHHH
T ss_pred HHHHHCCCCCCeEeHHHHHHHHHHHhcccccCCHHHHHHHHHHh
Confidence 4445555566678999999999888 7777777776666655
No 104
>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens} SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B* 1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C
Probab=34.07 E-value=23 Score=22.30 Aligned_cols=39 Identities=15% Similarity=0.307 Sum_probs=29.4
Q ss_pred HHHhcCCCCCCHHHHHHHHHhcCCCcchHHHHHHHHhhc
Q 033702 9 LAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVK 47 (113)
Q Consensus 9 ll~l~g~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L~ 47 (113)
.+-..++-.||.+++..++...|..+.+..+..+++.+.
T Consensus 95 ~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d 133 (151)
T 1w7j_B 95 VFDKEGNGKVMGAELRHVLTTLGEKMTEEEVETVLAGHE 133 (151)
T ss_dssp TTCTTSSSEEEHHHHHHHHHHSSSCCCHHHHHHHHTTCC
T ss_pred HhCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHhcc
Confidence 333344556899999999999998888887777777664
No 105
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=33.47 E-value=46 Score=22.47 Aligned_cols=41 Identities=22% Similarity=0.338 Sum_probs=31.3
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHhcCCCcchHHHHHHHHhh
Q 033702 6 AYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEV 46 (113)
Q Consensus 6 AYlll~l~g~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L 46 (113)
+|-++-..++-.||.+++..+|...|..+....+..+.+.+
T Consensus 16 ~F~~~D~d~dG~I~~~El~~~l~~lg~~~~~~~~~~~~~~~ 56 (176)
T 2lhi_A 16 AFALFDKDNNGSISSSELATVMRSLGLSPSEAEVNDLMNEI 56 (176)
T ss_dssp HHHTTCSSCSSCBCHHHHHHHHHHHTCCCCHHHHHHHHTTT
T ss_pred HHHHHCCCCCCCCCHHHHHHHHHHcCCChhHHHHHHHHHHh
Confidence 45555555666789999999999999988888877776655
No 106
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=33.41 E-value=63 Score=20.16 Aligned_cols=25 Identities=20% Similarity=0.318 Sum_probs=15.6
Q ss_pred hcCCCCCCHHHHHHHHHhcCCCcch
Q 033702 12 LGGNTSPSADDIKGILGSVGADCED 36 (113)
Q Consensus 12 l~g~~~~t~e~I~kvl~aaGveve~ 36 (113)
..|+..|+.+.|.+|.+..|++++.
T Consensus 62 E~g~~~~~~~~l~~la~~l~v~~~~ 86 (117)
T 3f52_A 62 ERGRKEVSSELLASVCHALGASVAD 86 (117)
T ss_dssp HTTSSCCCHHHHHHHHHHHTCCHHH
T ss_pred HCCCCCCCHHHHHHHHHHhCCCHHH
Confidence 3455556777777777766666544
No 107
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=33.34 E-value=34 Score=20.30 Aligned_cols=29 Identities=17% Similarity=0.315 Sum_probs=13.5
Q ss_pred CCCCHHHHHHHHHhcCCCcchHHHHHHHHh
Q 033702 16 TSPSADDIKGILGSVGADCEDNRLELLLSE 45 (113)
Q Consensus 16 ~~~t~e~I~kvl~aaGveve~~~~~~f~~~ 45 (113)
..+++++|..+..-. -.++.+.++.+..+
T Consensus 6 ~~~~ee~l~~L~emF-P~ld~~~I~~vL~a 34 (59)
T 1wgl_A 6 SGCSEEDLKAIQDMF-PNMDQEVIRSVLEA 34 (59)
T ss_dssp SSSCHHHHHHHHHHC-SSSCHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHC-CCCCHHHHHHHHHH
Confidence 344555555544443 34444555444443
No 108
>2d58_A Allograft inflammatory factor 1; EF-hand, metal binding protein; 1.90A {Homo sapiens}
Probab=33.22 E-value=32 Score=21.03 Aligned_cols=45 Identities=22% Similarity=0.324 Sum_probs=33.0
Q ss_pred hcCCCCCCHHHHHHHHHhcCCCcchHHHHHHHHhhcC-----CChHHHHH
Q 033702 12 LGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKG-----KDITELIA 56 (113)
Q Consensus 12 l~g~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L~g-----k~v~eLI~ 56 (113)
..++-.||.+++..+|...|..+....+..+.+.+.. .++.+.+.
T Consensus 43 ~d~~G~I~~~el~~~l~~~g~~~~~~~~~~l~~~~D~d~dg~i~~~eF~~ 92 (107)
T 2d58_A 43 LNGNGDIDIMSLKRMLEKLGVPKTHLELKKLIGEVSSGSGETFSYPDFLR 92 (107)
T ss_dssp CCTTSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHCSSSSSEECHHHHHH
T ss_pred CCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHH
Confidence 3445568999999999999998888777777776631 35666654
No 109
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=33.19 E-value=56 Score=19.14 Aligned_cols=21 Identities=14% Similarity=0.253 Sum_probs=12.9
Q ss_pred CCCCCHHHHHHHHHhcCCCcc
Q 033702 15 NTSPSADDIKGILGSVGADCE 35 (113)
Q Consensus 15 ~~~~t~e~I~kvl~aaGveve 35 (113)
...|+.+.|.+|.+..|++++
T Consensus 48 ~~~p~~~~l~~ia~~l~v~~~ 68 (78)
T 3qq6_A 48 QTNPSIQFLEKVSAVLDVSVH 68 (78)
T ss_dssp CCCCBHHHHHHHHHHHTCCHH
T ss_pred CCCCCHHHHHHHHHHHCcCHH
Confidence 455666666666666665543
No 110
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 2lhh_A 1f54_A 1f55_A
Probab=33.14 E-value=59 Score=19.97 Aligned_cols=41 Identities=22% Similarity=0.318 Sum_probs=29.3
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHhcCCCcchHHHHHHHHhh
Q 033702 6 AYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEV 46 (113)
Q Consensus 6 AYlll~l~g~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L 46 (113)
.|-.+-..++-.||.+++..++...|..+....+..+.+.+
T Consensus 16 ~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~ 56 (147)
T 4ds7_A 16 AFALFDKDNSGSISASELATVMRSLGLSPSEAEVADLMNEI 56 (147)
T ss_dssp HHHHHCTTCSSEEEHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHCCCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 34444444555688899999999888888777777666665
No 111
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata} SCOP: a.39.1.4
Probab=33.06 E-value=59 Score=19.45 Aligned_cols=41 Identities=20% Similarity=0.306 Sum_probs=28.4
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHhc---CCCcchHHHHHHHHhh
Q 033702 6 AYLLAVLGGNTSPSADDIKGILGSV---GADCEDNRLELLLSEV 46 (113)
Q Consensus 6 AYlll~l~g~~~~t~e~I~kvl~aa---Gveve~~~~~~f~~~L 46 (113)
++-++-..++-.|+.+++..+|... |..+....+..+.+.+
T Consensus 46 ~F~~~D~d~~G~i~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~ 89 (109)
T 5pal_A 46 VFEILDKDQSGFIEEEELKGVLKGFSAHGRDLNDTETKALLAAG 89 (109)
T ss_dssp HHHHHCTTCSSEECHHHHHTHHHHHCTTCCCCCHHHHHHHHHHH
T ss_pred HHHHHCCCCCCcCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 3444444555568888898888888 7777777766666655
No 112
>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases, like, EF-hand, structural genomics, structural genomics CON SGC, hydrolase; 1.80A {Homo sapiens}
Probab=32.99 E-value=34 Score=23.33 Aligned_cols=42 Identities=10% Similarity=0.025 Sum_probs=31.4
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHhc----CCCcchHHHHHHHHhhc
Q 033702 5 AAYLLAVLGGNTSPSADDIKGILGSV----GADCEDNRLELLLSEVK 47 (113)
Q Consensus 5 aAYlll~l~g~~~~t~e~I~kvl~aa----Gveve~~~~~~f~~~L~ 47 (113)
.++-++- .++-.||.++++.+|+.. |..+.+..+..+++.+.
T Consensus 80 ~aF~~fD-d~~G~I~~~El~~~l~~l~~~~G~~~~~~~~~~l~~~~d 125 (174)
T 2i7a_A 80 HVFQKVQ-TSPGVLLSSDLWKAIENTDFLRGIFISRELLHLVTLRYS 125 (174)
T ss_dssp HHHHHHC-SBTTBEEGGGHHHHHHTCGGGTTCCCCHHHHHHHHHHHS
T ss_pred HHHHHhc-CCCCcCCHHHHHHHHHHhHhccCCCCCHHHHHHHHHHHc
Confidence 4555666 666678999999999988 88887777777666654
No 113
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein; HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB: 1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Probab=32.83 E-value=50 Score=21.51 Aligned_cols=52 Identities=15% Similarity=0.091 Sum_probs=39.1
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHhcCCCcchHHHHHHHHhhcC-----CChHHHHH
Q 033702 5 AAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKG-----KDITELIA 56 (113)
Q Consensus 5 aAYlll~l~g~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L~g-----k~v~eLI~ 56 (113)
.+|-.+-..++-.||.+++..++...|..+....+..+.+.+.. .++.+.+.
T Consensus 113 ~~F~~~D~d~~G~Is~~El~~~l~~~g~~~~~~~~~~~~~~~D~d~dG~i~~~eF~~ 169 (191)
T 1uhk_A 113 ALFDIVDKDQNGAITLDEWKAYTKAAGIIQSSEDCEETFRVCDIDESGQLDVDEMTR 169 (191)
T ss_dssp HHHHHHCTTCSSEECHHHHHHHHHHHTSCCSHHHHHHHHHHSCCCTTSCEEHHHHHH
T ss_pred HHHHHhcCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHH
Confidence 45555555566679999999999999998888888888877742 35667665
No 114
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural genomics, seattle S genomics center for infectious disease, ssgcid; 1.90A {Entamoeba histolytica} PDB: 3sia_A 3sib_A
Probab=32.28 E-value=64 Score=22.45 Aligned_cols=42 Identities=12% Similarity=0.105 Sum_probs=32.8
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHhcCCCcchHHHHHHHHhhc
Q 033702 6 AYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVK 47 (113)
Q Consensus 6 AYlll~l~g~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L~ 47 (113)
++-.+-..++-.||.+++..+++..|..+.+.....+.+.+.
T Consensus 122 ~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~l~~~~d 163 (220)
T 3sjs_A 122 LFVMNARARSGTLEPHEILPALQQLGFYINQRTSLLLHRLFA 163 (220)
T ss_dssp HHHHHCCSSTTEECHHHHHHHHHHHTCCCCHHHHHHHHHHHC
T ss_pred HHHHHCCCCCCCCcHHHHHHHHHHhCCCCCHHHHHHHHHHhc
Confidence 344444456667999999999999999998888888877775
No 115
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus}
Probab=31.85 E-value=25 Score=21.91 Aligned_cols=34 Identities=15% Similarity=0.311 Sum_probs=27.2
Q ss_pred cCCCCCCHHHHHHHHHhcCCCcchHHHHHHHHhh
Q 033702 13 GGNTSPSADDIKGILGSVGADCEDNRLELLLSEV 46 (113)
Q Consensus 13 ~g~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L 46 (113)
.++-.||.+++..+|...|..+....+..+++.+
T Consensus 88 d~~G~I~~~El~~~l~~~g~~~~~~~~~~~~~~~ 121 (143)
T 3j04_B 88 EASGFIHEDHLRELLTTMGDRFTDEEVDEMYREA 121 (143)
T ss_dssp SSCCCCCTTTHHHHHHTSSSCCCHHHHHHHHHHT
T ss_pred CCCCeEcHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 4455689999999999999888887777777766
No 116
>2y5i_A S100Z, S100 calcium binding protein Z; metal-binding protein, EF-hand, calcium regulation, oligomer neuronal development, spine2; 2.03A {Danio rerio}
Probab=31.61 E-value=92 Score=19.16 Aligned_cols=54 Identities=13% Similarity=0.298 Sum_probs=36.5
Q ss_pred HHHHHHHHH-hcCCC-CCCHHHHHHHHHh-----cCCCcchHHHHHHHHhhcC-----CChHHHHH
Q 033702 3 VVAAYLLAV-LGGNT-SPSADDIKGILGS-----VGADCEDNRLELLLSEVKG-----KDITELIA 56 (113)
Q Consensus 3 y~aAYlll~-l~g~~-~~t~e~I~kvl~a-----aGveve~~~~~~f~~~L~g-----k~v~eLI~ 56 (113)
+.-+|-++- ..|+- .||.++++.+|.. .|..+.+..+..+++.+.. .++.|.+.
T Consensus 12 l~~~F~~fDd~dg~gG~I~~~El~~~l~~~~~~~lg~~~~~~~v~~l~~~~D~d~dG~I~f~EF~~ 77 (99)
T 2y5i_A 12 LITVFHNYSGSEGDKYKLSKGELKELLNAELTDFLMSQKDPMLVEKIMNDLDSNKDNEVDFNEFVV 77 (99)
T ss_dssp HHHHHHHHHTSSSSTTEECHHHHHHHHHHHSGGGGTTSCCHHHHHHHHHHHCTTCSSSEEHHHHHH
T ss_pred HHHHHHHHhccCCCcCcCCHHHHHHHHHHHhhhhccccccHHHHHHHHHHHCCCCCCcCcHHHHHH
Confidence 445666665 44433 6999999999987 5666777777777776631 45666654
No 117
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8 PDB: 1k95_A 1f4q_A 1f4o_A
Probab=31.51 E-value=1e+02 Score=19.68 Aligned_cols=41 Identities=17% Similarity=0.327 Sum_probs=28.0
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHhcCC-----CcchHHHHHHHHhh
Q 033702 6 AYLLAVLGGNTSPSADDIKGILGSVGA-----DCEDNRLELLLSEV 46 (113)
Q Consensus 6 AYlll~l~g~~~~t~e~I~kvl~aaGv-----eve~~~~~~f~~~L 46 (113)
++-.+-..++-.||.+++..++...|. .+....+..+.+.+
T Consensus 4 ~F~~~D~d~~G~i~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~ 49 (165)
T 1k94_A 4 TYFSAVAGQDGEVDAEELQRCLTQSGINGTYSPFSLETCRIMIAML 49 (165)
T ss_dssp HHHHHHHGGGTSBCHHHHHHHHHHHTTTTTSCCCCHHHHHHHHHHH
T ss_pred HHHHHhCCCCCcCCHHHHHHHHHHhccccCCCCCCHHHHHHHHHHh
Confidence 455566666566888888888888887 45555556555555
No 118
>2jjz_A Ionized calcium-binding adapter molecule 2; EF-hand, actin crosslinking, ionized calciu binding adapter molecule 2, metal-binding protein; 2.15A {Homo sapiens} PDB: 2jjz_B 2vtg_A
Probab=31.49 E-value=44 Score=21.87 Aligned_cols=45 Identities=13% Similarity=0.239 Sum_probs=33.1
Q ss_pred hcCCCCCCHHHHHHHHHhcCCCcchHHHHHHHHhhc-----CCChHHHHH
Q 033702 12 LGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVK-----GKDITELIA 56 (113)
Q Consensus 12 l~g~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L~-----gk~v~eLI~ 56 (113)
..++-.||.+++..+|...|..+....+..+.+.+. ..++.+.+.
T Consensus 61 ~d~~G~I~~~el~~~l~~~g~~~~~~e~~~l~~~~D~d~dg~I~~~eF~~ 110 (150)
T 2jjz_A 61 LNNEGEIDLMSLKRMMEKLGVPKTHLEMKKMISEVTGGVSDTISYRDFVN 110 (150)
T ss_dssp CCTTSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTSCSSBCHHHHHH
T ss_pred CCCcCcCCHHHHHHHHHHcCCCCCHHHHHHHHHHHCCCCCCcEeHHHHHH
Confidence 344556899999999999998888777777776663 246677664
No 119
>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB: 1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S 3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A
Probab=31.41 E-value=60 Score=21.08 Aligned_cols=50 Identities=10% Similarity=0.253 Sum_probs=34.5
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHhcCCCcchHHHHHHHHhhcC----CChHHHH
Q 033702 6 AYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKG----KDITELI 55 (113)
Q Consensus 6 AYlll~l~g~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L~g----k~v~eLI 55 (113)
++-.+-..++-.||.+++..++...|..+.+..+..+.+.+.+ .+..+.+
T Consensus 82 ~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~dd~dg~i~~~eF~ 135 (173)
T 1alv_A 82 IYKQFDVDRSGTIGSSELPGAFEAAGFHLNEHLYSMIIRRYSDEGGNMDFDNFI 135 (173)
T ss_dssp HHHHHCTTCCSSBCTTTHHHHHHHHTCCCCHHHHHHHHHHHTCSSSCBCHHHHH
T ss_pred HHHHHCCCCCCCCCHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCcCcHHHHH
Confidence 3444444555678999999999999988888777777766542 3445554
No 120
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y 1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y 3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y 2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Probab=31.28 E-value=48 Score=20.96 Aligned_cols=45 Identities=18% Similarity=0.324 Sum_probs=31.7
Q ss_pred hcCCCCCCHHHHHHHHHhcCCCcchHHHHHHHHhhc---C-CChHHHHH
Q 033702 12 LGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVK---G-KDITELIA 56 (113)
Q Consensus 12 l~g~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L~---g-k~v~eLI~ 56 (113)
..++-.||.+++..+|...|..+.+..+..+++.+. | .++.+.+.
T Consensus 98 ~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~dg~i~~~eF~~ 146 (156)
T 1wdc_B 98 EQETKKLNIEYIKDLLENMGDNFNKDEMRMTFKEAPVEGGKFDYVKFTA 146 (156)
T ss_dssp TTCCSCEEHHHHHHHHHHSSSCCCHHHHHHHHHHCCEETTEECHHHHHH
T ss_pred cCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCEEeHHHHHH
Confidence 345556899999999999988887777777776663 2 35555553
No 121
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Probab=31.28 E-value=82 Score=19.98 Aligned_cols=51 Identities=20% Similarity=0.356 Sum_probs=35.0
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHhcCCCcchHHHHHHHHhhcC-----CChHHHHH
Q 033702 6 AYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKG-----KDITELIA 56 (113)
Q Consensus 6 AYlll~l~g~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L~g-----k~v~eLI~ 56 (113)
.|-.+-..++-.||.+++..+|...|..+....+..+.+.+.. .++.+.+.
T Consensus 33 ~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~ 88 (169)
T 3qrx_A 33 AFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMISEIDKDGSGTIDFEEFLT 88 (169)
T ss_dssp HHHHHCTTCCSEECHHHHHHHHHHTSCCCCHHHHHHHHHHHCSSSSSSEEHHHHHH
T ss_pred HHHHhCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCcCCHHHHHH
Confidence 3444444555568999999999999988887777777766621 34556553
No 122
>1b4a_A Arginine repressor; helix turn helix; 2.50A {Geobacillus stearothermophilus} SCOP: a.4.5.3 d.74.2.1 PDB: 1f9n_A
Probab=31.26 E-value=82 Score=21.77 Aligned_cols=34 Identities=15% Similarity=0.197 Sum_probs=30.2
Q ss_pred cCCCCCCHHHHHHHHHhcCCCcchHHHHHHHHhh
Q 033702 13 GGNTSPSADDIKGILGSVGADCEDNRLELLLSEV 46 (113)
Q Consensus 13 ~g~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L 46 (113)
..+...|.++|...|+..|+.|....+...++.|
T Consensus 15 ~~~~~~tq~eL~~~L~~~G~~VtqaTisRDL~eL 48 (149)
T 1b4a_A 15 MSNDIETQDELVDRLREAGFNVTQATVSRDIKEM 48 (149)
T ss_dssp HHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHHHT
T ss_pred HHCCCccHHHHHHHHHHcCCCcCHHHHHHHHHHc
Confidence 3455679999999999999999999999999977
No 123
>3rm1_A Protein S100-B; alpha-helical, EF hand, metal binding protein-protein bindin; 1.24A {Bos taurus} PDB: 3rlz_A 1cfp_A 3cr2_A 3cr4_X* 3cr5_X* 3gk1_A* 3gk2_A* 3gk4_X* 3iqo_A 3iqq_A 3lle_A* 1psb_A 3czt_X 2h61_A 3d0y_A* 3d10_A* 3hcm_A* 3lk1_A* 3lk0_A* 1b4c_A ...
Probab=31.14 E-value=87 Score=18.71 Aligned_cols=39 Identities=10% Similarity=0.260 Sum_probs=30.6
Q ss_pred CCCHHHHHHHHHh-----cCCCcchHHHHHHHHhhc-----CCChHHHH
Q 033702 17 SPSADDIKGILGS-----VGADCEDNRLELLLSEVK-----GKDITELI 55 (113)
Q Consensus 17 ~~t~e~I~kvl~a-----aGveve~~~~~~f~~~L~-----gk~v~eLI 55 (113)
.||.++++.+++. .|....+..+..+++.+. ..++.|.+
T Consensus 27 ~Is~~EL~~~l~~~~~~~lg~~~~~~~v~~~~~~~D~d~dG~I~f~EF~ 75 (92)
T 3rm1_A 27 KLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSNGDGECDFQEFM 75 (92)
T ss_dssp SBCHHHHHHHHHHHCTTTSCCCCSHHHHHHHHHHHCTTSSSSBCHHHHH
T ss_pred eECHHHHHHHHHHHhhhhccCcccHHHHHHHHHHHcCCCCCCCcHHHHH
Confidence 7999999999999 888888888887777763 23566655
No 124
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP, structural genomics, PSI; 1.95A {Leishmania major} SCOP: a.39.1.8
Probab=31.11 E-value=97 Score=20.62 Aligned_cols=51 Identities=10% Similarity=0.247 Sum_probs=37.1
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHhcCCCcchHHHHHHHHhhcC-----CChHHHHH
Q 033702 6 AYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKG-----KDITELIA 56 (113)
Q Consensus 6 AYlll~l~g~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L~g-----k~v~eLI~ 56 (113)
+|-.+-..++-.||.+++..++...|..+.......+.+.+.. .++.+.+.
T Consensus 98 ~F~~~D~d~~G~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~ 153 (191)
T 1y1x_A 98 GFRKRDSSGDGRLDSNEVRAALLSSGYQVSEQTFQALMRKFDRQRRGSLGFDDYVE 153 (191)
T ss_dssp HHHHHCTTSSSCBCHHHHHHHHHTTSCCCCHHHHHHHHHHHCTTCSSSBCHHHHHH
T ss_pred HHHHhCCCCCCeEcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHH
Confidence 4444445566679999999999999998888888877777642 45666653
No 125
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin; EF-hands, calcium, metal binding protein; 2.17A {Bos taurus} PDB: 2f2p_A
Probab=30.88 E-value=1.1e+02 Score=19.68 Aligned_cols=51 Identities=20% Similarity=0.388 Sum_probs=35.7
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHhcCCCcchHHHHHHHHhhc-----CCChHHHHH
Q 033702 6 AYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVK-----GKDITELIA 56 (113)
Q Consensus 6 AYlll~l~g~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L~-----gk~v~eLI~ 56 (113)
.|-.+-..++-.||.+++..+|...|..+....+..+.+.+. ..++.+.+.
T Consensus 16 ~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~D~~~~g~i~~~EF~~ 71 (179)
T 2f2o_A 16 AFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 71 (179)
T ss_dssp HHHHHCTTCSSCBCHHHHHHHHHHTTCCCCHHHHHHHHHHHCTTCSSSBCHHHHHH
T ss_pred HHHHHCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCCCCCcHHHHHH
Confidence 344444455557899999999999998888777777766663 245666653
No 126
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=30.66 E-value=78 Score=18.95 Aligned_cols=21 Identities=14% Similarity=0.226 Sum_probs=11.1
Q ss_pred chHHHHHHHHhhcCCChHHHHH
Q 033702 35 EDNRLELLLSEVKGKDITELIA 56 (113)
Q Consensus 35 e~~~~~~f~~~L~gk~v~eLI~ 56 (113)
....+..+++.| |.++.+|+.
T Consensus 50 ~~~~l~~ia~~l-~v~~~~l~~ 70 (94)
T 2kpj_A 50 RMGKVQALADYF-NINKSDLIE 70 (94)
T ss_dssp CHHHHHHHHHHH-TCCTHHHHS
T ss_pred CHHHHHHHHHHH-CcCHHHHhc
Confidence 344444555444 566666664
No 127
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=30.22 E-value=65 Score=20.43 Aligned_cols=26 Identities=8% Similarity=0.157 Sum_probs=19.8
Q ss_pred hcCCCCCCHHHHHHHHHhcCCCcchH
Q 033702 12 LGGNTSPSADDIKGILGSVGADCEDN 37 (113)
Q Consensus 12 l~g~~~~t~e~I~kvl~aaGveve~~ 37 (113)
..|+..|+.+.+.+|.+..|+.++..
T Consensus 46 E~g~~~p~~~~l~~ia~~l~v~~~~l 71 (126)
T 3ivp_A 46 ENKGQHPSLQVLYDLVSLLNVSVDEF 71 (126)
T ss_dssp HHSCCCCCHHHHHHHHHHHTCCSHHH
T ss_pred HCCCCCCCHHHHHHHHHHHCcCHHHH
Confidence 45556689999999998888877653
No 128
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=30.03 E-value=95 Score=18.89 Aligned_cols=25 Identities=20% Similarity=0.213 Sum_probs=19.9
Q ss_pred HhcCCCCCCHHHHHHHHHhcCCCcc
Q 033702 11 VLGGNTSPSADDIKGILGSVGADCE 35 (113)
Q Consensus 11 ~l~g~~~~t~e~I~kvl~aaGveve 35 (113)
+..|+..|+.+.+.+|.+..|++++
T Consensus 51 ~e~g~~~~~~~~l~~l~~~l~v~~~ 75 (104)
T 3cec_A 51 VINGQRSITVDIAIRLGKALGNGPR 75 (104)
T ss_dssp HHTTSSCCCHHHHHHHHHHHTSCHH
T ss_pred HHcCCcCCCHHHHHHHHHHHCcCHH
Confidence 4566667899999999999988774
No 129
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Probab=29.99 E-value=59 Score=20.45 Aligned_cols=45 Identities=22% Similarity=0.280 Sum_probs=34.2
Q ss_pred hcCCCCCCHHHHHHHHHhcCCCcchHHHHHHHHhhc-----CCChHHHHH
Q 033702 12 LGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVK-----GKDITELIA 56 (113)
Q Consensus 12 l~g~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L~-----gk~v~eLI~ 56 (113)
..++-.||.+++..+|...|..+....+..+.+.+. ..++.+.+.
T Consensus 25 ~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~D~~~~g~i~~~eF~~ 74 (158)
T 2jnf_A 25 PEGSGRVSTDQIGIILEVLGIQQTKSTIRQLIDEFDPFGNGDIDFDSFKI 74 (158)
T ss_dssp SSSCSSEEHHHHHHHHHHTTCSCSHHHHHHHHHHHCTTCCSEECHHHHHH
T ss_pred CCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHH
Confidence 345567999999999999999888877777777663 246777765
No 130
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=29.97 E-value=62 Score=19.22 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=12.9
Q ss_pred CCCCCCHHHHHHHHHhcCCCcch
Q 033702 14 GNTSPSADDIKGILGSVGADCED 36 (113)
Q Consensus 14 g~~~~t~e~I~kvl~aaGveve~ 36 (113)
|+..|+.+.|.+|.+..|++++.
T Consensus 49 g~~~p~~~~l~~la~~l~v~~~~ 71 (91)
T 1x57_A 49 GRAIPNNQVLGKIERAIGLKLRG 71 (91)
T ss_dssp TCSCCCHHHHHHHHHHHTBCCSS
T ss_pred CCCCCCHHHHHHHHHHHCcCHHH
Confidence 33446666666666666555543
No 131
>1wy9_A Allograft inflammatory factor 1; EF-hand, calucium binding, metal binding protein; 2.10A {Mus musculus} PDB: 2g2b_A
Probab=29.23 E-value=37 Score=22.22 Aligned_cols=45 Identities=22% Similarity=0.330 Sum_probs=32.2
Q ss_pred hcCCCCCCHHHHHHHHHhcCCCcchHHHHHHHHhhcC-----CChHHHHH
Q 033702 12 LGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKG-----KDITELIA 56 (113)
Q Consensus 12 l~g~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L~g-----k~v~eLI~ 56 (113)
..++-.||.+++..+|...|..+....+..+++.+.. .++.+.+.
T Consensus 59 ~d~dG~I~~~El~~~l~~~g~~~~~~~~~~l~~~~D~d~dg~I~~~eF~~ 108 (147)
T 1wy9_A 59 LNGNGDIDIMSLKRMLEKLGVPKTHLELKRLIREVSSGSEETFSYSDFLR 108 (147)
T ss_dssp CCTTSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHCSSCTTEECHHHHHH
T ss_pred CCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHH
Confidence 3445568999999999999888887777777776631 35666654
No 132
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1; calmodulin-like domain, EF calcium binding protein, transferase; 2.00A {Arabidopsis thaliana}
Probab=29.16 E-value=1.1e+02 Score=19.32 Aligned_cols=50 Identities=20% Similarity=0.272 Sum_probs=35.5
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHhcCCCcchHHHHHHHHhhc-----CCChHHHHH
Q 033702 7 YLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVK-----GKDITELIA 56 (113)
Q Consensus 7 Ylll~l~g~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L~-----gk~v~eLI~ 56 (113)
|-.+-..++-.||.+++..++...|..+....+..+.+.+. ..+..+.+.
T Consensus 33 F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~ 87 (166)
T 2aao_A 33 FNMIDADKSGQITFEELKAGLKRVGANLKESEILDLMQAADVDNSGTIDYKEFIA 87 (166)
T ss_dssp HHHHCTTCCSSBCHHHHHHHGGGGTCCCCHHHHHHHHHHHCTTCCSSBCHHHHHH
T ss_pred HHHhCCCCCCeEeHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHH
Confidence 44444455667999999999999999888777777766662 245667664
No 133
>2jd3_A STBB protein; plasmid segregation, actin-like filaments, RHH2, PARM, plasmid, DNA binding, DNA binding protein; 2.8A {Escherichia coli}
Probab=28.25 E-value=64 Score=22.37 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=18.5
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHhc
Q 033702 6 AYLLAVLGGNTSPSADDIKGILGSV 30 (113)
Q Consensus 6 AYlll~l~g~~~~t~e~I~kvl~aa 30 (113)
.|+|+.+-. .++|.++|.+|+.+.
T Consensus 58 P~LLA~~~~-~~~t~~~l~~li~s~ 81 (130)
T 2jd3_A 58 PVLLTAILS-EEFSADQVVTLLSQT 81 (130)
T ss_dssp HHHHHHHCS-TTCCHHHHHHHHHHH
T ss_pred HHHHHHHhc-CCCCHHHHHHHHHHH
Confidence 477777664 358999999999865
No 134
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein, calcium-binding protein, NHE1 regulating protein; 2.70A {Homo sapiens}
Probab=28.11 E-value=88 Score=20.82 Aligned_cols=52 Identities=19% Similarity=0.292 Sum_probs=38.3
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHhc-CCCcchHHHHHHHHh----hc----C-CChHHHHH
Q 033702 5 AAYLLAVLGGNTSPSADDIKGILGSV-GADCEDNRLELLLSE----VK----G-KDITELIA 56 (113)
Q Consensus 5 aAYlll~l~g~~~~t~e~I~kvl~aa-Gveve~~~~~~f~~~----L~----g-k~v~eLI~ 56 (113)
.+|-.+-..++-.||.+++..++... |..+.+..+..+++. +. | .++++.+.
T Consensus 118 ~~F~~~D~d~dG~Is~~El~~~l~~~~g~~~~~~~~~~~~~~~~~~~D~d~dG~Is~~EF~~ 179 (202)
T 2bec_A 118 YAFQLYDLDRDGKISRHEMLQVLRLMVGVQVTEEQLENIADRTVQEADEDGDGAVSFVEFTK 179 (202)
T ss_dssp HHHHHHCTTCSSEECHHHHHHHHHHSCCSCCCHHHHHHHHHHHHHHHCSSCSSSEEHHHHHH
T ss_pred HHHHHhCCCCCCeEcHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCCCCcCcHHHHHH
Confidence 34555555666679999999999999 988888888777776 53 1 46677775
No 135
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium binding protein, apoptosis, calcium, endoplasmic reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB: 2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Probab=28.09 E-value=95 Score=19.97 Aligned_cols=42 Identities=12% Similarity=0.175 Sum_probs=31.2
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHhcCCCcchHHHHHHHHhhc
Q 033702 6 AYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVK 47 (113)
Q Consensus 6 AYlll~l~g~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L~ 47 (113)
+|-.+-..++-.||.+++..++...|..+....+..+.+.+.
T Consensus 79 ~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d 120 (172)
T 2znd_A 79 VFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFD 120 (172)
T ss_dssp HHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHHHC
T ss_pred HHHHHCCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHhC
Confidence 344444455567999999999999998888877777777663
No 136
>3kfu_G Glutamyl-tRNA(Gln) amidotransferase subunit C; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Probab=28.07 E-value=1.2e+02 Score=19.17 Aligned_cols=51 Identities=18% Similarity=0.228 Sum_probs=39.8
Q ss_pred CCCCHHHHHHHHHhcCCCcchHHHHHHHHhhcCCChHHHHHhhhhhhccCCCCCccc
Q 033702 16 TSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKLASVPSGGGVA 72 (113)
Q Consensus 16 ~~~t~e~I~kvl~aaGveve~~~~~~f~~~L~gk~v~eLI~~G~~kl~~~~~gg~a~ 72 (113)
.+||.++|++|-+=+-+++.+.-...|...|+ ++| .=-++|..+..-|..|
T Consensus 4 M~i~~e~V~~iA~LArL~l~eeE~~~~~~~l~-----~Il-~~ve~L~evDt~~VeP 54 (92)
T 3kfu_G 4 MELSPELLRKLETLAKIRLSPEEEALLLQDLK-----RIL-DFVDALPRVEEGGAEE 54 (92)
T ss_dssp -CCCHHHHHHHHHHTTCCCCHHHHHHHHHHHH-----HHH-HHHHTCCCCCCCCCCC
T ss_pred CccCHHHHHHHHHHhCCCCCHHHHHHHHHHHH-----HHH-HHHHHHHhcCCCCCCC
Confidence 46999999999999999999999999998773 333 3456788887766543
No 137
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=27.99 E-value=80 Score=19.07 Aligned_cols=27 Identities=7% Similarity=0.012 Sum_probs=21.9
Q ss_pred HhcCCCCCCHHHHHHHHHhcCCCcchH
Q 033702 11 VLGGNTSPSADDIKGILGSVGADCEDN 37 (113)
Q Consensus 11 ~l~g~~~~t~e~I~kvl~aaGveve~~ 37 (113)
...|...|+.+.+.+|.+..|++++..
T Consensus 38 ~E~g~~~p~~~~l~~la~~l~v~~~~l 64 (98)
T 3lfp_A 38 YEKGKHAPDFEMANRLAKVLKIPVSYL 64 (98)
T ss_dssp HHHTSSCCCHHHHHHHHHHHTSCGGGG
T ss_pred HHCCCCCCCHHHHHHHHHHHCcCHHHH
Confidence 345666799999999999999988754
No 138
>1xk4_A Calgranulin A; S100 family, heterotetramer, metal binding protein; HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2 PDB: 1mr8_A
Probab=27.62 E-value=68 Score=18.98 Aligned_cols=44 Identities=20% Similarity=0.296 Sum_probs=28.6
Q ss_pred HHHHHHHHHh-cCCC-CCCHHHHHHHH-HhcCCCcchHHHHHHHHhh
Q 033702 3 VVAAYLLAVL-GGNT-SPSADDIKGIL-GSVGADCEDNRLELLLSEV 46 (113)
Q Consensus 3 y~aAYlll~l-~g~~-~~t~e~I~kvl-~aaGveve~~~~~~f~~~L 46 (113)
+..+|-.+-. .|+- .||.+++..+| +..|..+....+..+++.+
T Consensus 12 l~~~F~~~D~~d~dG~~I~~~El~~~l~~~~g~~~~~~~~~~l~~~~ 58 (93)
T 1xk4_A 12 IIDVYHKYSLIKGNFHAVYRDDLKKLLETESPQYIRKKGADVWFKEL 58 (93)
T ss_dssp HHHHHHHHHTSSSCTTCBCHHHHHHHHHHHSCHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhhcCCCcCeECHHHHHHHHHHHCcccCCHHHHHHHHHHh
Confidence 3455666666 6666 79999999999 7777544333344444444
No 139
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=27.13 E-value=83 Score=18.27 Aligned_cols=17 Identities=12% Similarity=0.171 Sum_probs=8.9
Q ss_pred CCCHHHHHHHHHhcCCC
Q 033702 17 SPSADDIKGILGSVGAD 33 (113)
Q Consensus 17 ~~t~e~I~kvl~aaGve 33 (113)
.|+.+.+.+|.+..|++
T Consensus 54 ~p~~~~l~~ia~~l~v~ 70 (86)
T 2ofy_A 54 TPAFFTIAAVARVLDLS 70 (86)
T ss_dssp SCBHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHhCCC
Confidence 45555555555555444
No 140
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca binding, EF-hand, luminescent protein; HET: CZH; 1.10A {Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A* 1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Probab=26.95 E-value=50 Score=21.64 Aligned_cols=52 Identities=15% Similarity=0.123 Sum_probs=36.0
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHhcCCCcchHHHHHHHHhhcC-----CChHHHHH
Q 033702 5 AAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKG-----KDITELIA 56 (113)
Q Consensus 5 aAYlll~l~g~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L~g-----k~v~eLI~ 56 (113)
.+|-.+-..++-.||.+++..++...|..+....+..+.+.+.. .++.+.+.
T Consensus 117 ~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~ 173 (195)
T 1qv0_A 117 AVFDIFDKDGSGTITLDEWKAYGKISGISPSQEDCEATFRHCDLDNAGDLDVDEMTR 173 (195)
T ss_dssp HHHHHTC----CEECHHHHHHHHHHHSSCCCHHHHHHHHHHSCCCTTSCEEHHHHHH
T ss_pred HHHHHhcCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCCHHHHHH
Confidence 34444445556679999999999999998888888888777731 35667665
No 141
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=26.85 E-value=69 Score=20.07 Aligned_cols=26 Identities=12% Similarity=0.132 Sum_probs=18.0
Q ss_pred HhcCCCCCCHHHHHHHHHhcCCCcch
Q 033702 11 VLGGNTSPSADDIKGILGSVGADCED 36 (113)
Q Consensus 11 ~l~g~~~~t~e~I~kvl~aaGveve~ 36 (113)
+..|+..|+.+.|.+|.+..|+.++.
T Consensus 54 ~E~G~~~p~~~~l~~ia~~l~v~~~~ 79 (114)
T 3vk0_A 54 VERKRWNIALSNIEKMAAALGVAAYQ 79 (114)
T ss_dssp HTTTCCCCCHHHHHHHHHHHTSCHHH
T ss_pred HHcCCCCCCHHHHHHHHHHhCCCHHH
Confidence 34555567888888888877776653
No 142
>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light chain, cell cycle protein; 1.65A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A 2fce_A
Probab=26.66 E-value=41 Score=20.98 Aligned_cols=34 Identities=24% Similarity=0.356 Sum_probs=25.8
Q ss_pred cCCCCCCHHHHHHHHHhcCCCcchHHHHHHHHhh
Q 033702 13 GGNTSPSADDIKGILGSVGADCEDNRLELLLSEV 46 (113)
Q Consensus 13 ~g~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L 46 (113)
.++-.||.+++..++...|..+....+..+++.+
T Consensus 95 d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~ 128 (148)
T 1m45_A 95 ESTGKVSVGDLRYMLTGLGEKLTDAEVDELLKGV 128 (148)
T ss_dssp SSSSEEEHHHHHHHHHHSTTCCCHHHHHHHHTTC
T ss_pred CCCCcCCHHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 3445689999999999988887777777666655
No 143
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Probab=26.62 E-value=1.1e+02 Score=18.63 Aligned_cols=51 Identities=12% Similarity=0.121 Sum_probs=36.7
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHhcCCCcchHHHHHHHHhhc-----CCChHHHHH
Q 033702 6 AYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVK-----GKDITELIA 56 (113)
Q Consensus 6 AYlll~l~g~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L~-----gk~v~eLI~ 56 (113)
.|-.+-..++-.||.+++..+|...|..+....+..+.+.+. ..++.+.+.
T Consensus 16 ~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~ 71 (153)
T 3ox6_A 16 AFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNLGGHVDFDDFVE 71 (153)
T ss_dssp HHHHHHHHCSSSCCHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTSTTCCCHHHHHH
T ss_pred HHHHhCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCccCcHHHHHH
Confidence 445555556667999999999999999888777776666552 245667664
No 144
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=26.10 E-value=47 Score=22.66 Aligned_cols=41 Identities=15% Similarity=0.118 Sum_probs=32.2
Q ss_pred CCCCHHHHHHHHHhcCC-C---cchHHHHHHHHhhcCCChHHHHH
Q 033702 16 TSPSADDIKGILGSVGA-D---CEDNRLELLLSEVKGKDITELIA 56 (113)
Q Consensus 16 ~~~t~e~I~kvl~aaGv-e---ve~~~~~~f~~~L~gk~v~eLI~ 56 (113)
..++.+++-.||.+++- + +-......+++.++||+.+++-.
T Consensus 92 ~~id~~~l~eLl~AAnyL~I~~Lld~~c~~va~~i~gkt~eeir~ 136 (159)
T 2ast_A 92 LKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRK 136 (159)
T ss_dssp TCSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 35789999999999983 3 44455667888999999998765
No 145
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=26.00 E-value=41 Score=19.65 Aligned_cols=17 Identities=18% Similarity=0.147 Sum_probs=7.3
Q ss_pred CCCHHHHHHHHHhcCCC
Q 033702 17 SPSADDIKGILGSVGAD 33 (113)
Q Consensus 17 ~~t~e~I~kvl~aaGve 33 (113)
.|+.+.+.+|.+..|++
T Consensus 51 ~~~~~~l~~i~~~l~~~ 67 (88)
T 2wiu_B 51 NTTLTTFFKILQSLELS 67 (88)
T ss_dssp GCBHHHHHHHHHHTTCE
T ss_pred CCCHHHHHHHHHHhCCC
Confidence 34444444444444433
No 146
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=25.25 E-value=83 Score=17.97 Aligned_cols=27 Identities=19% Similarity=-0.013 Sum_probs=21.8
Q ss_pred CCCCHHHHHHHHHhcCCCcchHHHHHH
Q 033702 16 TSPSADDIKGILGSVGADCEDNRLELL 42 (113)
Q Consensus 16 ~~~t~e~I~kvl~aaGveve~~~~~~f 42 (113)
.+++...|+.+|+.++.+++...-.++
T Consensus 16 P~~~~~~ik~~L~~~~Gd~d~Ai~~LL 42 (49)
T 1otr_A 16 PAISKSKLQVHLLENNNDLDLTIGLLL 42 (49)
T ss_dssp SSSCHHHHHHHHHHTTTCSHHHHHHHH
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 357899999999999999998654443
No 147
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=24.88 E-value=53 Score=19.71 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=12.7
Q ss_pred cCCCCCCHHHHHHHHHhcCCCcc
Q 033702 13 GGNTSPSADDIKGILGSVGADCE 35 (113)
Q Consensus 13 ~g~~~~t~e~I~kvl~aaGveve 35 (113)
.|+..|+.+.+.+|.+..|..|.
T Consensus 39 ~g~~~p~~~~l~~ia~~l~~~v~ 61 (99)
T 2l49_A 39 SGRSTPPTDVMMNILQTPQFTKY 61 (99)
T ss_dssp TTSSCCCHHHHHHHHSSSSSSSS
T ss_pred cCCCCCCHHHHHHHHHHhCCCCC
Confidence 34445666666666666333333
No 148
>3ip4_C Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} SCOP: a.137.12.1 PDB: 2df4_C 2dqn_C* 2g5h_C 2g5i_C* 2f2a_C
Probab=24.57 E-value=1.4e+02 Score=19.00 Aligned_cols=50 Identities=8% Similarity=0.108 Sum_probs=39.7
Q ss_pred CCCHHHHHHHHHhcCCCcchHHHHHHHHhhcCCChHHHHHhhhhhhccCCCCCccc
Q 033702 17 SPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKLASVPSGGGVA 72 (113)
Q Consensus 17 ~~t~e~I~kvl~aaGveve~~~~~~f~~~L~gk~v~eLI~~G~~kl~~~~~gg~a~ 72 (113)
+||.++|++|-+=+-+++.+.-...|...|+ ++| .=-++|..+..-|..|
T Consensus 3 ~i~~e~v~~iA~LArL~l~eeE~~~~~~~l~-----~Il-~~ve~L~evDt~~VeP 52 (100)
T 3ip4_C 3 KVTREEVEHIANLARLQISPEETEEMANTLE-----SIL-DFAKQNDSADTEGVEP 52 (100)
T ss_dssp CCCHHHHHHHHHHTTCCCCHHHHHHHHHHHH-----HHH-HHHGGGGGSCCTTCCC
T ss_pred CCCHHHHHHHHHHcCCCCCHHHHHHHHHHHH-----HHH-HHHHHHhhcCCCCCCc
Confidence 5899999999999999999999999998773 333 3456788887766543
No 149
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle, myosin subfragment 2, heavy meromyosin, essential light chain; 20.00A {Avicularia avicularia}
Probab=24.46 E-value=57 Score=21.97 Aligned_cols=50 Identities=20% Similarity=0.277 Sum_probs=34.9
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHhcCCCcchHHHHHHHHhhc----C-CChHHHHH
Q 033702 6 AYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVK----G-KDITELIA 56 (113)
Q Consensus 6 AYlll~l~g~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L~----g-k~v~eLI~ 56 (113)
+|-++-..++-.||.+++..+| ..|..+....+..+++.+. | .++.+++.
T Consensus 131 ~F~~~D~d~~G~Is~~El~~~l-~~g~~~~~~~~~~l~~~~D~d~dG~I~~~EF~~ 185 (196)
T 3dtp_E 131 AFNLFDEGDGKCKEETLKRSLT-TWGEKFSQDEVDQALSEAPIDGNGLIDIKKFAQ 185 (196)
T ss_dssp HHHTTCSSSSCCBHHHHHHHHH-HSSSCCCHHHHHHHHHSSCEETTEECHHHHHHH
T ss_pred HHHHHCCCCCCcCcHHHHHHHH-HcCCCCCHHHHHHHHHHcCCCCCCEEeHHHHHH
Confidence 3334444555679999999999 9998888888887777663 1 34566654
No 150
>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein targeting, AKA beta-augmentation, calmodulin-binding, membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B* 2p6b_B 1aui_B 1m63_B* 1tco_B*
Probab=24.37 E-value=1.3e+02 Score=18.52 Aligned_cols=40 Identities=18% Similarity=0.317 Sum_probs=30.0
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHh-cCCCcchHHHHHHHHh
Q 033702 6 AYLLAVLGGNTSPSADDIKGILGS-VGADCEDNRLELLLSE 45 (113)
Q Consensus 6 AYlll~l~g~~~~t~e~I~kvl~a-aGveve~~~~~~f~~~ 45 (113)
+|-.+-..++-.||.+++..++.. .|..+....+..+++.
T Consensus 80 ~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 120 (155)
T 3ll8_B 80 AFRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVDK 120 (155)
T ss_dssp HHHHHCTTCSSCBCHHHHHHHHHHHHGGGSCHHHHHHHHHH
T ss_pred HHHHhCCCCCCcCcHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 444454556667999999999999 6888888777776665
No 151
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z 1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z 3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z 2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...
Probab=23.88 E-value=57 Score=20.54 Aligned_cols=33 Identities=15% Similarity=0.335 Sum_probs=26.3
Q ss_pred cCCCCCCHHHHHHHHHhcCCCcchHHHHHHHHh
Q 033702 13 GGNTSPSADDIKGILGSVGADCEDNRLELLLSE 45 (113)
Q Consensus 13 ~g~~~~t~e~I~kvl~aaGveve~~~~~~f~~~ 45 (113)
.++-.||.+++..+|...|..+....+..+++.
T Consensus 96 d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~ 128 (156)
T 1wdc_C 96 EGQGFISGAELRHVLTALGERLSDEDVDEIIKL 128 (156)
T ss_dssp SSSSEEEHHHHHHHHHHSSSCCCHHHHHHHHHH
T ss_pred CCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 444568999999999999988887777777776
No 152
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand, phosphoprotein, calcium binding; 2.65A {Homo sapiens}
Probab=23.82 E-value=1.3e+02 Score=19.80 Aligned_cols=50 Identities=18% Similarity=0.209 Sum_probs=36.3
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHhcCCCcchHHHHHHHHhhc-----CCChHHHHH
Q 033702 7 YLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVK-----GKDITELIA 56 (113)
Q Consensus 7 Ylll~l~g~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L~-----gk~v~eLI~ 56 (113)
|-.+-..++-.||.+++..+|...|..+....+..+.+.+. ..++.+++.
T Consensus 43 F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~D~d~dg~i~~~ef~~ 97 (204)
T 3e3r_A 43 FRQLDRDGSRSLDADEFRQGLAKLGLVLDQAEAEGVCRKWDRNGSGTLDLEEFLR 97 (204)
T ss_dssp HHHHCTTCCSSBCHHHHHHHHHTTTCCCCHHHHHHHHHHHCTTCSSSBCHHHHHH
T ss_pred HHHHccCCCCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCCCcCcHHHHHH
Confidence 34444455667999999999999999888888777777663 245667664
No 153
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=23.81 E-value=87 Score=19.36 Aligned_cols=23 Identities=13% Similarity=0.276 Sum_probs=13.6
Q ss_pred cCCCCCCHHHHHHHHHhcCCCcc
Q 033702 13 GGNTSPSADDIKGILGSVGADCE 35 (113)
Q Consensus 13 ~g~~~~t~e~I~kvl~aaGveve 35 (113)
.|+..|+.+.+.+|.+..|+.++
T Consensus 44 ~g~~~p~~~~l~~la~~l~v~~~ 66 (114)
T 3op9_A 44 SGETKPDIEKLIRLATYFHLSID 66 (114)
T ss_dssp HTSSCCCHHHHHHHHHHHTCCHH
T ss_pred cCCCCCCHHHHHHHHHHhCCCHH
Confidence 34445666666666666665543
No 154
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=23.12 E-value=1e+02 Score=18.03 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=17.1
Q ss_pred hcCCC-CCCHHHHHHHHHhcCCCcc
Q 033702 12 LGGNT-SPSADDIKGILGSVGADCE 35 (113)
Q Consensus 12 l~g~~-~~t~e~I~kvl~aaGveve 35 (113)
..|+. .|+.+.+.+|++..|++++
T Consensus 52 e~g~~~~~~~~~l~~la~~l~~~~~ 76 (83)
T 2a6c_A 52 MRGKIDLFSLESLIDMITSIGLKVE 76 (83)
T ss_dssp HTTCGGGCCHHHHHHHHHHTTCCCC
T ss_pred HcCCCCCCCHHHHHHHHHHcCCCeE
Confidence 44554 4788888888888887765
No 155
>1cb1_A Calbindin D9K; calcium-binding protein; NMR {Sus scrofa} SCOP: a.39.1.1
Probab=23.02 E-value=70 Score=17.65 Aligned_cols=43 Identities=14% Similarity=0.206 Sum_probs=27.1
Q ss_pred HHHHHHHHh-cCCC-CCCHHHHHHHHHh-cCCCc-chHHHHHHHHhh
Q 033702 4 VAAYLLAVL-GGNT-SPSADDIKGILGS-VGADC-EDNRLELLLSEV 46 (113)
Q Consensus 4 ~aAYlll~l-~g~~-~~t~e~I~kvl~a-aGvev-e~~~~~~f~~~L 46 (113)
..+|-++-. .++- .|+.+++..++.. .|... ....+..+.+.+
T Consensus 10 ~~~F~~~D~~d~~G~~i~~~el~~~l~~~~g~~~~~~~~~~~~~~~~ 56 (78)
T 1cb1_A 10 KSIFEKYAAKEGDPNQLSKEELKQLIQAEFPSLLKGPRTLDDLFQEL 56 (78)
T ss_dssp HHHHHHHHTTSSSTTEECHHHHHHHHHHHCSSCCSSCCCSSHHHHHT
T ss_pred HHHHHHHhccCCCcCEeCHHHHHHHHHHHhhhhcccHHHHHHHHHHh
Confidence 445666665 5655 6999999999986 77554 333333334333
No 156
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=22.96 E-value=1.1e+02 Score=20.32 Aligned_cols=24 Identities=8% Similarity=0.124 Sum_probs=15.2
Q ss_pred hcCCCCCCHHHHHHHHHhcCCCcc
Q 033702 12 LGGNTSPSADDIKGILGSVGADCE 35 (113)
Q Consensus 12 l~g~~~~t~e~I~kvl~aaGveve 35 (113)
..|+..|+.+.|.+|.+..|++++
T Consensus 102 E~G~~~ps~~~l~~la~~lgv~~~ 125 (141)
T 3kxa_A 102 ENSKQSLQDKTVQKLANALGVSPL 125 (141)
T ss_dssp HHTCSCCCHHHHHHHHHHHTCCHH
T ss_pred HcCCCCCCHHHHHHHHHHHCCCHH
Confidence 344455677777777777766654
No 157
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=22.90 E-value=1.3e+02 Score=18.09 Aligned_cols=40 Identities=15% Similarity=0.185 Sum_probs=28.5
Q ss_pred cCCCCCCHHHHHHHHHhcCCCcchHHHHHHHHhhcCCChHHHH
Q 033702 13 GGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELI 55 (113)
Q Consensus 13 ~g~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L~gk~v~eLI 55 (113)
.|+..||.++|+.|-+..|+.+..-.-.+.. .+-||.+-|
T Consensus 3 ~~~~~it~~~Vk~LRe~TGag~~dcKkAL~e---~~GDi~~Ai 42 (64)
T 2cp9_A 3 SGSSGSSKELLMKLRRKTGYSFVNCKKALET---CGGDLKQAE 42 (64)
T ss_dssp CSSSCCCCHHHHHHHHHHCCCHHHHHHHHHH---HTSCHHHHH
T ss_pred CCcccCCHHHHHHHHHHhCCCHHHHHHHHHH---cCCCHHHHH
Confidence 4678899999999999999987665433332 355666544
No 158
>3pm6_A Putative fructose-bisphosphate aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.20A {Coccidioides immitis}
Probab=22.86 E-value=56 Score=25.56 Aligned_cols=53 Identities=13% Similarity=0.107 Sum_probs=38.1
Q ss_pred HHhcCCCCCCHHHHHHHHHhcC---CCcchHHHHHHHHhh----cCCChHHHHHhhhhhhc
Q 033702 10 AVLGGNTSPSADDIKGILGSVG---ADCEDNRLELLLSEV----KGKDITELIASGREKLA 63 (113)
Q Consensus 10 l~l~g~~~~t~e~I~kvl~aaG---veve~~~~~~f~~~L----~gk~v~eLI~~G~~kl~ 63 (113)
|+|+|...++.++|++.++ .| ++|+..+...|.+.+ ...+...++..+.+.++
T Consensus 224 LVlHGgSG~p~e~i~~ai~-~GV~KiNi~Tdl~~a~~~~~r~~~~~~~~~~~~~~~~~a~~ 283 (306)
T 3pm6_A 224 LVLHGADPFTKEIFEKCIE-RGVAKVNVNRAVNNEYVKVMREKAGSLPITRLHEEVTNAMQ 283 (306)
T ss_dssp EEECSCTTCCHHHHHHHHH-TTEEEEEESHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred EEeeCCCCCCHHHHHHHHH-cCCeEEEeChHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 5677767789999999995 46 478888888777765 34566777776654443
No 159
>2lpy_A Matrix protein P10; GAG, myristoylated, myristate, viral protein; HET: MYR; NMR {Mason-pfizer monkey virus}
Probab=22.76 E-value=65 Score=22.09 Aligned_cols=27 Identities=22% Similarity=0.267 Sum_probs=23.0
Q ss_pred HHHHHHHHhcCCCcchHHHHHHHHhhc
Q 033702 21 DDIKGILGSVGADCEDNRLELLLSEVK 47 (113)
Q Consensus 21 e~I~kvl~aaGveve~~~~~~f~~~L~ 47 (113)
.-|+.+|+.-||.|....+..|.+.+.
T Consensus 12 ~~Lk~~LK~rGvkV~~k~L~~Ff~~i~ 38 (124)
T 2lpy_A 12 EQLKQALKTRGVKVKYADLLKFFDFVK 38 (124)
T ss_dssp HHHHHHHHTTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCeeecHHHHHHHHHHHH
Confidence 357889999999999999999988764
No 160
>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A {Rattus norvegicus} PDB: 2e30_A
Probab=22.55 E-value=1.2e+02 Score=20.34 Aligned_cols=51 Identities=24% Similarity=0.376 Sum_probs=35.1
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHhc-CCCcchHHHHHH----HHhhcC-----CChHHHHH
Q 033702 6 AYLLAVLGGNTSPSADDIKGILGSV-GADCEDNRLELL----LSEVKG-----KDITELIA 56 (113)
Q Consensus 6 AYlll~l~g~~~~t~e~I~kvl~aa-Gveve~~~~~~f----~~~L~g-----k~v~eLI~ 56 (113)
+|-.+-..++-.||.+++..+|... |..+.+..+..+ ++.+.. .++.|.+.
T Consensus 118 ~F~~~D~d~dG~Is~~El~~~l~~~~g~~~s~~~~~~l~~~~~~~~D~d~dG~Is~~EF~~ 178 (208)
T 2ct9_A 118 AFRLYDLDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVK 178 (208)
T ss_dssp HHHHHCTTCSSEECHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHCSSSSSSEEHHHHHH
T ss_pred HHHHHCCCCCCEEcHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCCcCcHHHHHH
Confidence 4455555566679999999999986 988888777665 444421 35666664
No 161
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=22.52 E-value=49 Score=19.67 Aligned_cols=23 Identities=26% Similarity=0.255 Sum_probs=18.0
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHH
Q 033702 6 AYLLAVLGGNTSPSADDIKGILG 28 (113)
Q Consensus 6 AYlll~l~g~~~~t~e~I~kvl~ 28 (113)
|...+.++|...|+.+||.-.++
T Consensus 47 A~~~a~hakRkTI~~~DV~lA~~ 69 (70)
T 1ku5_A 47 AVEFARHAGRKTVKVEDIKLAIK 69 (70)
T ss_dssp HHHHHHTTTCSEECHHHHHHHHT
T ss_pred HHHHHHHcCCCcCCHHHHHHHHH
Confidence 45567788888899999987664
No 162
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=22.52 E-value=50 Score=19.39 Aligned_cols=24 Identities=29% Similarity=0.191 Sum_probs=19.8
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHh
Q 033702 6 AYLLAVLGGNTSPSADDIKGILGS 29 (113)
Q Consensus 6 AYlll~l~g~~~~t~e~I~kvl~a 29 (113)
|+..+...+...|+.+||...++.
T Consensus 43 A~~~a~~~kRkTI~~~Di~~A~~~ 66 (68)
T 1b67_A 43 AVKLAKHAGRKTIKAEDIELARKM 66 (68)
T ss_dssp HHHHHHHTTCSEECHHHHHHHGGG
T ss_pred HHHHHHHcCCCccCHHHHHHHHHh
Confidence 577788899889999999887653
No 163
>2wcb_A Protein S100-A12; calcium signalling, HOST-parasite response, metal binding PR; 1.73A {Homo sapiens} PDB: 1odb_A* 2wc8_A 2wcf_A 2wce_A 1e8a_A 1gqm_A
Probab=22.52 E-value=71 Score=19.42 Aligned_cols=44 Identities=11% Similarity=0.194 Sum_probs=29.9
Q ss_pred HHHHHHHHH-hcCCC-CCCHHHHHHHHHh-----cCCCcchHHHHHHHHhh
Q 033702 3 VVAAYLLAV-LGGNT-SPSADDIKGILGS-----VGADCEDNRLELLLSEV 46 (113)
Q Consensus 3 y~aAYlll~-l~g~~-~~t~e~I~kvl~a-----aGveve~~~~~~f~~~L 46 (113)
+.-+|-++- ..|+- .||.++++.+|.. .|..+....+..+++.+
T Consensus 14 l~~~F~~fD~~dg~gg~I~~~El~~~l~~~~~~~lg~~~~~~~v~~~~~~~ 64 (95)
T 2wcb_A 14 IVNIFHQYSVRKGHFDTLSKGELKQLLTKELANTIKNIKDKAVIDEIFQGL 64 (95)
T ss_dssp HHHHHHHHHTSSSSTTEEEHHHHHHHHHHHTHHHHHHCCCHHHHHHHHTTS
T ss_pred HHHHHHHHhccCCCCCccCHHHHHHHHHHHhhhhccccccHHHHHHHHHHH
Confidence 455666776 44443 6999999999987 45555666666666655
No 164
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=22.26 E-value=60 Score=19.55 Aligned_cols=22 Identities=32% Similarity=0.564 Sum_probs=17.8
Q ss_pred CCCCCHHHHHHHHHhcCCCcch
Q 033702 15 NTSPSADDIKGILGSVGADCED 36 (113)
Q Consensus 15 ~~~~t~e~I~kvl~aaGveve~ 36 (113)
-.++|+++|..+++..|.+|..
T Consensus 10 p~~~te~~l~~~F~~~G~~v~~ 31 (91)
T 2lxi_A 10 PQAATEDDIRGQLQSHGVQARE 31 (91)
T ss_dssp CSSCCHHHHHHHHHHHTCCCSB
T ss_pred CCCCCHHHHHHHHHHhCCEeEE
Confidence 3468999999999999966554
No 165
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=22.05 E-value=98 Score=18.79 Aligned_cols=23 Identities=13% Similarity=0.053 Sum_probs=17.7
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHh
Q 033702 7 YLLAVLGGNTSPSADDIKGILGS 29 (113)
Q Consensus 7 Ylll~l~g~~~~t~e~I~kvl~a 29 (113)
-.+..+.|+..|+.+||+--+++
T Consensus 43 ~~~a~HAgrktv~~eDVkLAi~~ 65 (68)
T 1taf_A 43 KVYANHARKKTIDLDDVRLATEV 65 (68)
T ss_dssp HHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCHHHHHHHHHh
Confidence 34567788889999999876654
No 166
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus} SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A
Probab=21.92 E-value=66 Score=19.16 Aligned_cols=41 Identities=10% Similarity=0.139 Sum_probs=24.8
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHhc---CCCcchHHHHHHHHhh
Q 033702 6 AYLLAVLGGNTSPSADDIKGILGSV---GADCEDNRLELLLSEV 46 (113)
Q Consensus 6 AYlll~l~g~~~~t~e~I~kvl~aa---Gveve~~~~~~f~~~L 46 (113)
++-++-..++-.||.+++..++... |..+....+..+.+.+
T Consensus 46 ~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~ 89 (108)
T 1rro_A 46 IFRFIDNDQSGYLDGDELKYFLQKFQSDARELTESETKSLMDAA 89 (108)
T ss_dssp HHHHHCTTCSSEECTHHHHTGGGGTCTTSCCCCHHHHHHHHHHH
T ss_pred HHHHhCCCCCCcCCHHHHHHHHHHHhhccCCCCHHHHHHHHHHh
Confidence 3444444444457788888888777 5566665555555544
No 167
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=21.78 E-value=1.2e+02 Score=18.26 Aligned_cols=20 Identities=15% Similarity=0.258 Sum_probs=11.4
Q ss_pred CCCCCHHHHHHHHHhcCCCc
Q 033702 15 NTSPSADDIKGILGSVGADC 34 (113)
Q Consensus 15 ~~~~t~e~I~kvl~aaGvev 34 (113)
...|+.+.+.+|.+..|+++
T Consensus 39 ~~~p~~~~l~~ia~~l~v~~ 58 (111)
T 1b0n_A 39 QTNPSIQFLEKVSAVLDVSV 58 (111)
T ss_dssp CSCCCHHHHHHHHHHHTCCH
T ss_pred CCCCCHHHHHHHHHHHCcCH
Confidence 44566666666666555543
No 168
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=21.67 E-value=52 Score=19.80 Aligned_cols=51 Identities=10% Similarity=-0.052 Sum_probs=30.8
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCcchHHHHHHHHhhc--C---CChHHHH
Q 033702 3 VVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVK--G---KDITELI 55 (113)
Q Consensus 3 y~aAYlll~l~g~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L~--g---k~v~eLI 55 (113)
|..+|-++-..++-.||.+++..++...|.. ...+..+.+.+. + .+.+|.+
T Consensus 11 ~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~--~~~~~~i~~~~D~d~dG~i~~~EF~ 66 (92)
T 1fi6_A 11 YVNQFKTIQPDLNGFIPGSAAKEFFTKSKLP--ILELSHIWELSDFDKDGALTLDEFC 66 (92)
T ss_dssp HHHHHTTTCCSTTCEEEHHHHHHHHHHHSSC--HHHHHHHHHHHCTTCSSEEEHHHHH
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHHHcCCC--HHHHHHHHHHHCCCCCCCCCHHHHH
Confidence 4445555555555568999999999998854 333444444442 1 3456655
No 169
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=21.46 E-value=1.3e+02 Score=20.30 Aligned_cols=29 Identities=17% Similarity=0.195 Sum_probs=22.5
Q ss_pred HHhcCCCCCCHHHHHHHHHhcCCCcchHH
Q 033702 10 AVLGGNTSPSADDIKGILGSVGADCEDNR 38 (113)
Q Consensus 10 l~l~g~~~~t~e~I~kvl~aaGveve~~~ 38 (113)
-+..|+..||.+.|.+|.+..|++++...
T Consensus 43 ~~e~g~~~p~~~~l~~ia~~l~v~~~~l~ 71 (192)
T 1y9q_A 43 QIERGESSPTIATLWKIASGLEASFSAFF 71 (192)
T ss_dssp HHHTTCSCCCHHHHHHHHHHHTCCSGGGG
T ss_pred HHHcCCCCCCHHHHHHHHHHHCcCHHHHc
Confidence 34566667899999999999998877643
No 170
>1lng_A SRP19, signal recognition particle 19 kDa protein; protein-RNA complex, signaling protein/RNA complex; 2.30A {Methanocaldococcus jannaschii} SCOP: d.201.1.1 PDB: 2v3c_A 3ndb_A 1l9a_A*
Probab=21.10 E-value=70 Score=20.35 Aligned_cols=20 Identities=30% Similarity=0.469 Sum_probs=17.4
Q ss_pred CCCCHHHHHHHHHhcCCCcc
Q 033702 16 TSPSADDIKGILGSVGADCE 35 (113)
Q Consensus 16 ~~~t~e~I~kvl~aaGveve 35 (113)
.+||.++|..+++..|+++.
T Consensus 27 ~~P~~~EI~~a~~~lgl~~~ 46 (87)
T 1lng_A 27 EKPSLKDIEKALKKLGLEPK 46 (87)
T ss_dssp SSCCHHHHHHHHHHTTCCCE
T ss_pred cCCCHHHHHHHHHHcCCCeE
Confidence 46999999999999998753
No 171
>3h0l_C Glutamyl-tRNA(Gln) amidotransferase subunit C; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_C 3h0r_C*
Probab=21.04 E-value=1.6e+02 Score=18.43 Aligned_cols=49 Identities=6% Similarity=0.126 Sum_probs=39.0
Q ss_pred CCHHHHHHHHHhcCCCcchHHHHHHHHhhcCCChHHHHHhhhhhhccCCCCCccc
Q 033702 18 PSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKLASVPSGGGVA 72 (113)
Q Consensus 18 ~t~e~I~kvl~aaGveve~~~~~~f~~~L~gk~v~eLI~~G~~kl~~~~~gg~a~ 72 (113)
||.++|++|-+=+-+++.+.-...|...|+ ++| .=-++|..+..-|..|
T Consensus 2 i~~e~v~~iA~LArL~l~eee~~~~~~~l~-----~Il-~~ve~L~evDt~~VeP 50 (94)
T 3h0l_C 2 VDREWVLKIAKLARLELKEEEIEVFQKQLS-----DIL-DFIDQLKELDTENVEP 50 (94)
T ss_dssp CCHHHHHHHHHHTTCCCCHHHHHHHHHHHH-----HHH-HHTTTGGGSCCTTCCC
T ss_pred CCHHHHHHHHHHcCCCCCHHHHHHHHHHHH-----HHH-HHHHHHhccCCCCcCc
Confidence 799999999999999999999999998773 333 3556777887766543
No 172
>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB: 1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S 3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A
Probab=21.03 E-value=1.6e+02 Score=18.85 Aligned_cols=41 Identities=15% Similarity=0.202 Sum_probs=27.2
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHhc-C-------CCcchHHHHHHHHhh
Q 033702 5 AAYLLAVLGGNTSPSADDIKGILGSV-G-------ADCEDNRLELLLSEV 46 (113)
Q Consensus 5 aAYlll~l~g~~~~t~e~I~kvl~aa-G-------veve~~~~~~f~~~L 46 (113)
-.|-.+- .++-.||.+++..+|... | ..+....+..+.+.+
T Consensus 8 ~~F~~~D-d~~G~i~~~el~~~l~~~~g~~~~~~~~~~~~~~~~~l~~~~ 56 (173)
T 1alv_A 8 RLFAQLA-GDDMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVM 56 (173)
T ss_dssp HHHHHHH-GGGTSBCHHHHHHHHHHHHHTCSTTCCSCCCHHHHHHHHHHH
T ss_pred HHHHHHh-CCCCCcCHHHHHHHHHHhhhcccccccCCCCHHHHHHHHHHH
Confidence 3455555 555568888888888887 6 555566666555555
No 173
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.92 E-value=59 Score=20.25 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=19.9
Q ss_pred CCCCCHHHHHHHHHhcCCC--cchHH
Q 033702 15 NTSPSADDIKGILGSVGAD--CEDNR 38 (113)
Q Consensus 15 ~~~~t~e~I~kvl~aaGve--ve~~~ 38 (113)
|..||.++|.+|-..+|.+ |-..|
T Consensus 27 n~~Ps~eei~~LA~~lgL~~~VVrVW 52 (71)
T 2da7_A 27 NMEPNSDELLKISIAVGLPQEFVKEW 52 (71)
T ss_dssp CSSCCHHHHHHHHHHHTCCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCCHHHHHHH
Confidence 6789999999999999985 44555
No 174
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=20.88 E-value=1.3e+02 Score=18.79 Aligned_cols=22 Identities=9% Similarity=0.255 Sum_probs=11.6
Q ss_pred CCCCCCHHHHHHHHHhcCCCcc
Q 033702 14 GNTSPSADDIKGILGSVGADCE 35 (113)
Q Consensus 14 g~~~~t~e~I~kvl~aaGveve 35 (113)
|+..|+.+.+.+|.+..|+.++
T Consensus 72 G~~~p~~~~l~~ia~~l~v~~~ 93 (107)
T 2jvl_A 72 GTATPDQNILSKMERVLNVKLR 93 (107)
T ss_dssp TCSCCCHHHHHHHHHTTTCBSS
T ss_pred CCCCCCHHHHHHHHHHHCcCHh
Confidence 3334555555555555555544
No 175
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=20.09 E-value=1.6e+02 Score=18.05 Aligned_cols=19 Identities=21% Similarity=0.139 Sum_probs=13.7
Q ss_pred CCHHHHHHHHHhcCCCcch
Q 033702 18 PSADDIKGILGSVGADCED 36 (113)
Q Consensus 18 ~t~e~I~kvl~aaGveve~ 36 (113)
|+.+.|.+|.+..|++++.
T Consensus 63 ~s~~~l~kIa~~L~v~~~~ 81 (88)
T 3t76_A 63 VSLTVLLAICEYLNCDFGD 81 (88)
T ss_dssp CCHHHHHHHHHHHTCCGGG
T ss_pred cCHHHHHHHHHHHCcCHHH
Confidence 6777777777777776654
Done!