Query 033703
Match_columns 113
No_of_seqs 132 out of 1065
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 05:19:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033703.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033703hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0417 Ubiquitin-protein liga 100.0 1.3E-41 2.8E-46 221.2 13.9 113 1-113 1-148 (148)
2 COG5078 Ubiquitin-protein liga 100.0 4.9E-39 1.1E-43 212.8 14.9 111 2-112 6-152 (153)
3 PLN00172 ubiquitin conjugating 100.0 6.2E-38 1.3E-42 207.9 14.5 112 1-112 1-147 (147)
4 PTZ00390 ubiquitin-conjugating 100.0 2.1E-37 4.5E-42 206.3 14.5 112 2-113 3-149 (152)
5 KOG0419 Ubiquitin-protein liga 100.0 2.1E-37 4.5E-42 197.2 12.7 108 2-109 5-147 (152)
6 KOG0426 Ubiquitin-protein liga 100.0 1.9E-33 4.2E-38 179.2 12.1 111 1-111 4-163 (165)
7 KOG0425 Ubiquitin-protein liga 100.0 6.3E-33 1.4E-37 181.2 13.2 109 2-110 6-163 (171)
8 KOG0424 Ubiquitin-protein liga 100.0 1.6E-31 3.5E-36 172.4 13.1 112 2-113 5-158 (158)
9 cd00195 UBCc Ubiquitin-conjuga 100.0 3.4E-31 7.4E-36 174.4 13.0 104 4-107 2-141 (141)
10 PF00179 UQ_con: Ubiquitin-con 100.0 3.5E-31 7.5E-36 174.2 12.0 103 5-107 1-140 (140)
11 KOG0418 Ubiquitin-protein liga 100.0 9.5E-31 2.1E-35 175.5 12.9 112 2-113 4-154 (200)
12 smart00212 UBCc Ubiquitin-conj 100.0 1.5E-30 3.2E-35 172.1 13.6 108 4-111 1-145 (145)
13 KOG0421 Ubiquitin-protein liga 100.0 1.4E-30 3E-35 168.3 12.4 106 3-109 31-171 (175)
14 KOG0422 Ubiquitin-protein liga 100.0 4.8E-28 1E-32 155.6 10.9 111 1-112 2-149 (153)
15 KOG0416 Ubiquitin-protein liga 99.9 5.2E-26 1.1E-30 150.6 12.4 109 2-113 4-149 (189)
16 KOG0420 Ubiquitin-protein liga 99.9 5.5E-25 1.2E-29 145.9 11.2 110 2-112 29-175 (184)
17 KOG0423 Ubiquitin-protein liga 99.9 4E-26 8.7E-31 151.7 5.8 111 3-113 12-157 (223)
18 KOG0894 Ubiquitin-protein liga 99.9 1.8E-22 4E-27 138.3 10.7 65 2-66 6-70 (244)
19 KOG0429 Ubiquitin-conjugating 99.8 9.5E-20 2.1E-24 125.4 11.5 105 4-109 22-167 (258)
20 KOG0427 Ubiquitin conjugating 99.8 7.4E-18 1.6E-22 107.8 8.6 64 2-66 16-79 (161)
21 KOG0428 Non-canonical ubiquiti 99.7 2.6E-17 5.6E-22 115.2 6.6 64 2-66 12-75 (314)
22 KOG0895 Ubiquitin-conjugating 99.1 1.9E-10 4.1E-15 93.8 5.0 63 4-66 854-916 (1101)
23 KOG0895 Ubiquitin-conjugating 99.0 1.5E-09 3.3E-14 88.6 7.4 64 3-66 284-347 (1101)
24 KOG0896 Ubiquitin-conjugating 98.8 5.8E-09 1.3E-13 67.2 4.9 65 4-68 8-76 (138)
25 PF05773 RWD: RWD domain; Int 95.8 0.036 7.8E-07 34.1 5.5 62 4-66 4-67 (113)
26 smart00591 RWD domain in RING 95.1 0.14 2.9E-06 31.3 6.2 35 32-67 24-60 (107)
27 PF08694 UFC1: Ubiquitin-fold 94.9 0.016 3.4E-07 38.2 1.7 59 3-66 26-93 (161)
28 PF05743 UEV: UEV domain; Int 92.3 0.22 4.8E-06 31.9 3.5 33 30-66 32-66 (121)
29 KOG3357 Uncharacterized conser 91.8 0.29 6.2E-06 31.9 3.5 59 3-67 29-97 (167)
30 PF14462 Prok-E2_E: Prokaryoti 91.5 0.72 1.6E-05 29.7 5.1 46 20-66 13-60 (122)
31 PF14461 Prok-E2_B: Prokaryoti 90.3 0.31 6.7E-06 31.6 2.7 21 46-66 34-54 (133)
32 KOG0897 Predicted ubiquitin-co 88.4 1.9 4.2E-05 27.4 5.1 17 50-66 13-29 (122)
33 KOG4018 Uncharacterized conser 84.1 3.2 6.9E-05 29.3 4.9 58 7-66 8-67 (215)
34 PF09765 WD-3: WD-repeat regio 83.6 4 8.6E-05 30.1 5.5 54 4-66 102-155 (291)
35 COG4847 Uncharacterized protei 73.8 18 0.0004 22.3 6.0 78 30-110 4-100 (103)
36 KOG0309 Conserved WD40 repeat- 71.3 20 0.00044 30.3 6.6 60 5-66 424-485 (1081)
37 KOG4274 Positive cofactor 2 (P 64.0 67 0.0015 26.4 8.0 51 6-66 624-677 (742)
38 smart00340 HALZ homeobox assoc 62.4 7 0.00015 20.4 1.7 15 3-17 21-35 (44)
39 PF11619 P53_C: Transcription 52.9 43 0.00093 19.2 7.8 34 29-76 3-38 (71)
40 PF12018 DUF3508: Domain of un 52.2 24 0.00052 25.8 3.7 28 84-111 239-266 (281)
41 PF09606 Med15: ARC105 or Med1 50.2 5.3 0.00011 33.5 0.0 21 46-66 712-732 (799)
42 KOG3285 Spindle assembly check 49.4 36 0.00077 23.6 3.9 38 2-39 120-157 (203)
43 KOG2391 Vacuolar sorting prote 47.2 85 0.0019 24.0 5.8 34 29-66 51-86 (365)
44 PF01175 Urocanase: Urocanase; 46.9 36 0.00078 27.3 4.0 27 85-111 271-297 (546)
45 TIGR01228 hutU urocanate hydra 45.0 38 0.00082 27.2 3.9 27 85-111 272-298 (545)
46 PRK05414 urocanate hydratase; 44.9 38 0.00082 27.3 3.9 27 85-111 281-307 (556)
47 PF03847 TFIID_20kDa: Transcri 44.2 61 0.0013 18.5 4.4 42 70-111 4-45 (68)
48 TIGR01633 phi3626_gp14_N putat 41.3 84 0.0018 19.3 6.0 57 3-60 64-122 (124)
49 PF09280 XPC-binding: XPC-bind 40.8 48 0.001 18.4 3.0 22 83-104 33-54 (59)
50 PF04552 Sigma54_DBD: Sigma-54 38.4 37 0.0008 22.8 2.6 62 46-110 78-146 (160)
51 PF09943 DUF2175: Uncharacteri 37.0 1.1E+02 0.0023 19.2 5.7 20 32-53 2-21 (101)
52 cd07981 TAF12 TATA Binding Pro 36.7 84 0.0018 17.9 4.5 42 70-111 6-47 (72)
53 PF11333 DUF3135: Protein of u 34.8 94 0.002 18.5 3.7 24 87-110 8-31 (83)
54 PF12065 DUF3545: Protein of u 32.6 34 0.00074 19.2 1.5 13 4-16 37-49 (59)
55 PF04314 DUF461: Protein of un 31.7 70 0.0015 19.7 3.0 26 33-58 78-103 (110)
56 KOG4445 Uncharacterized conser 31.2 1.1E+02 0.0024 23.0 4.3 19 48-66 45-63 (368)
57 PF04881 Adeno_GP19K: Adenovir 29.8 60 0.0013 21.2 2.4 39 28-66 45-94 (139)
58 smart00803 TAF TATA box bindin 29.1 1.1E+02 0.0025 17.1 3.5 29 83-111 19-47 (65)
59 PF12259 DUF3609: Protein of u 28.0 41 0.00088 25.7 1.7 54 2-57 33-86 (361)
60 COG4957 Predicted transcriptio 27.8 31 0.00068 22.7 0.9 18 49-66 103-120 (148)
61 cd03457 intradiol_dioxygenase_ 27.5 69 0.0015 22.1 2.6 20 47-66 86-105 (188)
62 cd00421 intradiol_dioxygenase 27.3 71 0.0015 20.8 2.6 20 47-66 65-85 (146)
63 KOG1047 Bifunctional leukotrie 27.0 2.3E+02 0.005 23.3 5.7 19 94-112 397-415 (613)
64 PF14135 DUF4302: Domain of un 26.9 2.2E+02 0.0048 20.0 5.2 47 2-60 10-57 (235)
65 COG2847 Copper(I)-binding prot 25.9 1.4E+02 0.0031 20.0 3.8 26 33-58 105-130 (151)
66 PF08872 KGK: KGK domain; Int 25.4 1.7E+02 0.0037 18.5 3.9 28 33-63 67-96 (114)
67 PF02970 TBCA: Tubulin binding 24.6 63 0.0014 19.4 1.8 14 2-15 8-21 (90)
68 PF09030 Creb_binding: Creb bi 22.7 1.3E+02 0.0029 18.8 3.0 47 64-112 52-99 (104)
69 PF02969 TAF: TATA box binding 22.1 1.7E+02 0.0036 16.6 3.5 30 82-111 19-48 (66)
70 PF05678 VQ: VQ motif; InterP 21.9 89 0.0019 15.0 1.7 18 93-110 9-26 (31)
71 cd03459 3,4-PCD Protocatechuat 21.6 1.1E+02 0.0023 20.5 2.6 19 48-66 73-96 (158)
72 PF15597 Imm36: Immunity prote 21.5 2.2E+02 0.0047 17.8 4.1 28 23-56 24-51 (101)
73 TIGR02422 protocat_beta protoc 21.1 98 0.0021 22.0 2.4 17 31-47 204-220 (220)
74 PF05709 Sipho_tail: Phage tai 20.7 2.9E+02 0.0062 18.9 5.3 56 4-61 55-113 (249)
75 COG2987 HutU Urocanate hydrata 20.7 1.7E+02 0.0037 23.5 3.8 26 86-111 282-307 (561)
76 PF12075 KN_motif: KN motif; 20.4 53 0.0012 16.8 0.7 12 42-56 5-16 (39)
77 PF12652 CotJB: CotJB protein; 20.1 2E+02 0.0044 16.9 3.8 30 81-110 24-53 (78)
No 1
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-41 Score=221.18 Aligned_cols=113 Identities=76% Similarity=1.413 Sum_probs=110.5
Q ss_pred ChHHHHHHHHHHhhcCCCCCeeeeecCCCceEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCcH--------------
Q 033703 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPK-------------- 66 (113)
Q Consensus 1 ~a~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~-------------- 66 (113)
+|.+||.+|++++++.+++|+++.++++|+++|+++|.||.+||||||+|++.|.||++||++||+
T Consensus 1 ~a~~RI~kE~~~l~~dp~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~~ 80 (148)
T KOG0417|consen 1 MASKRIIKELQDLLRDPPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNIDS 80 (148)
T ss_pred CcHHHHHHHHHHHhcCCCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcCc
Confidence 578999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ---------------------HHHHHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhhCC
Q 033703 67 ---------------------VLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAMG 113 (113)
Q Consensus 67 ---------------------il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~~~~~~~k~a~~ 113 (113)
||.+|++||.+||+++|+++++|.+|+.|+.+|+++||+|++|||++
T Consensus 81 ~G~IclDILk~~WsPAl~i~~VllsI~sLL~~PnpddPL~~~ia~~~k~d~~~~~~~ARewt~kyA~~ 148 (148)
T KOG0417|consen 81 NGRICLDILKDQWSPALTISKVLLSICSLLSDPNPDDPLVPDIAELYKTDRAKYERTAREWTRKYAMG 148 (148)
T ss_pred cccchHHhhhccCChhhHHHHHHHHHHHHhcCCCCCccccHHHHHHHHhhHHHHHHHHHHHHHHHhcC
Confidence 89999999999999999999999999999999999999999999986
No 2
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-39 Score=212.81 Aligned_cols=111 Identities=61% Similarity=1.143 Sum_probs=108.5
Q ss_pred hHHHHHHHHHHhhcCCCCCeeeeecCC-CceEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCcH--------------
Q 033703 2 ASKRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPK-------------- 66 (113)
Q Consensus 2 a~~Rl~~E~~~l~~~~~~~~~~~~~~~-~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~-------------- 66 (113)
|.+||++|++.+++.++.++++.+.++ |+++|+++|.||.+|+|+||.|++.|.||++||++||+
T Consensus 6 a~~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~HPNV~~ 85 (153)
T COG5078 6 ALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFHPNVDP 85 (153)
T ss_pred HHHHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcCCCcCC
Confidence 679999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred ---------------------HHHHHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhhC
Q 033703 67 ---------------------VLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAM 112 (113)
Q Consensus 67 ---------------------il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~~~~~~~k~a~ 112 (113)
||.+|++||.+||.++|+|.+||++|++|+++|.++||+++++||.
T Consensus 86 ~G~vCLdIL~~~WsP~~~l~sILlsl~slL~~PN~~~Pln~daa~~~~~d~~~y~~~vr~~~~~~~~ 152 (153)
T COG5078 86 SGNVCLDILKDRWSPVYTLETILLSLQSLLLSPNPDSPLNTEAATLYREDKEEYEKKVREWVKKYAE 152 (153)
T ss_pred CCCChhHHHhCCCCccccHHHHHHHHHHHHcCCCCCCCCChHHHHHHHhCHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999985
No 3
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=6.2e-38 Score=207.94 Aligned_cols=112 Identities=72% Similarity=1.312 Sum_probs=109.4
Q ss_pred ChHHHHHHHHHHhhcCCCCCeeeeecCCCceEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCcH--------------
Q 033703 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPK-------------- 66 (113)
Q Consensus 1 ~a~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~-------------- 66 (113)
||.+||++|++++++++++|+++.++++|+++|+++|.||++|||+||.|+++|.||++||++||+
T Consensus 1 ma~~Rl~kE~~~l~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~ 80 (147)
T PLN00172 1 MATKRIQKEHKDLLKDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINS 80 (147)
T ss_pred ChHHHHHHHHHHHHhCCCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceECC
Confidence 789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ---------------------HHHHHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhhC
Q 033703 67 ---------------------VLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAM 112 (113)
Q Consensus 67 ---------------------il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~~~~~~~k~a~ 112 (113)
||.+|++||.+|++++|+|.+||++|.+|+++|.++|++|+++||.
T Consensus 81 ~G~iCl~il~~~W~p~~ti~~il~~i~~ll~~P~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~ 147 (147)
T PLN00172 81 NGSICLDILRDQWSPALTVSKVLLSISSLLTDPNPDDPLVPEIARVFKENRSRYEATAREWTQRYAT 147 (147)
T ss_pred CCEEEcccCcCCCCCcCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHhhC
Confidence 8999999999999999999999999999999999999999999983
No 4
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=2.1e-37 Score=206.32 Aligned_cols=112 Identities=44% Similarity=0.815 Sum_probs=109.0
Q ss_pred hHHHHHHHHHHhhcCCCCCeeeeecCCCceEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCcH---------------
Q 033703 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPK--------------- 66 (113)
Q Consensus 2 a~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~--------------- 66 (113)
+++||++|++++++++++|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+
T Consensus 3 ~~kRl~~E~~~l~~~~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV~~~ 82 (152)
T PTZ00390 3 ISKRIEKETQNLANDPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKL 82 (152)
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceECCC
Confidence 57999999999999999999999999999999999999999999999999999999999999998
Q ss_pred --------------------HHHHHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhhCC
Q 033703 67 --------------------VLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAMG 113 (113)
Q Consensus 67 --------------------il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~~~~~~~k~a~~ 113 (113)
||.+|++||.+|++++|+|.+||++|.+|++.|.++|++|+++||++
T Consensus 83 G~iCl~iL~~~W~p~~ti~~iL~~i~~ll~~P~~~~pln~~aa~~~~~d~~~f~~~a~~~~~~~a~~ 149 (152)
T PTZ00390 83 GRICLDILKDKWSPALQIRTVLLSIQALLSAPEPDDPLDTSVADHFKNNRADAEKVAREWNQKYAKH 149 (152)
T ss_pred CeEECccCcccCCCCCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHHhcc
Confidence 89999999999999999999999999999999999999999999964
No 5
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-37 Score=197.15 Aligned_cols=108 Identities=42% Similarity=0.875 Sum_probs=105.3
Q ss_pred hHHHHHHHHHHhhcCCCCCeeeeecCCCceEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCcH---------------
Q 033703 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPK--------------- 66 (113)
Q Consensus 2 a~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~--------------- 66 (113)
|-+||++|++.++++++.||+..|.++|++.|.++|+||.+|||+||+|++.|.|+++||.+||.
T Consensus 5 ArrrLmrDfkrlqedpp~gisa~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHPNvya~ 84 (152)
T KOG0419|consen 5 ARRRLMRDFKRLQEDPPAGISAAPVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHPNVYAD 84 (152)
T ss_pred HHHHHHHHHHHhhcCCCCCccCCCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccCCCcCCC
Confidence 67999999999999999999999999999999999999999999999999999999999999999
Q ss_pred --------------------HHHHHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHH
Q 033703 67 --------------------VLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQK 109 (113)
Q Consensus 67 --------------------il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~~~~~~~k 109 (113)
||.+||+||++||+++|+|.+||++|++|+++|.++|++.+.+
T Consensus 85 G~iClDiLqNrWsp~Ydva~ILtsiQslL~dPn~~sPaN~eAA~Lf~e~~rey~rrVk~~veq 147 (152)
T KOG0419|consen 85 GSICLDILQNRWSPTYDVASILTSIQSLLNDPNPNSPANSEAARLFSENKREYERRVKETVEQ 147 (152)
T ss_pred CcchHHHHhcCCCCchhHHHHHHHHHHHhcCCCCCCcccHHHHHHHhhChHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998765
No 6
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-33 Score=179.24 Aligned_cols=111 Identities=37% Similarity=0.785 Sum_probs=106.5
Q ss_pred ChHHHHHHHHHHhhcCCCCCeeeeecC-CCceEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCcH-------------
Q 033703 1 MASKRILKELKDLQKDPPTSCSAGPVA-EDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPK------------- 66 (113)
Q Consensus 1 ~a~~Rl~~E~~~l~~~~~~~~~~~~~~-~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~------------- 66 (113)
+|+|||++|+++|-.++++||.+.|.+ +|.++|.+.|.||++|+|+||.|..++.||.+||.+||+
T Consensus 4 ~AlkRLm~EykqLt~~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHPNiy 83 (165)
T KOG0426|consen 4 TALKRLMAEYKQLTLNPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHPNIY 83 (165)
T ss_pred hHHHHHHHHHHHHccCCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccccCccc
Confidence 489999999999999999999998876 789999999999999999999999999999999999999
Q ss_pred -----------------------------------HHHHHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhh
Q 033703 67 -----------------------------------VLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 111 (113)
Q Consensus 67 -----------------------------------il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~~~~~~~k~a 111 (113)
||.++.+||.+||.++.+|.+|+.+|++|+++|.+.|+..++|.-
T Consensus 84 ~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLSV~SMLaEPNdESgANvdA~~mWRe~R~ef~~i~~~lvrKtL 163 (165)
T KOG0426|consen 84 PDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDACKMWREDREEFEKIAKRLVRKTL 163 (165)
T ss_pred CCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHHHHHHHcCCCcccCcccHHHHHHHHhHHHHHHHHHHHHHHhh
Confidence 899999999999999999999999999999999999999999853
No 7
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.3e-33 Score=181.22 Aligned_cols=109 Identities=39% Similarity=0.787 Sum_probs=103.3
Q ss_pred hHHHHHHHHHHhhcCCCCCeeeeecCC-CceEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCcH--------------
Q 033703 2 ASKRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPK-------------- 66 (113)
Q Consensus 2 a~~Rl~~E~~~l~~~~~~~~~~~~~~~-~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~-------------- 66 (113)
|..-|.++|++|++.+..|+++...++ |+++|.|.|+||++|+|+||.|+..+.||.+||.+||+
T Consensus 6 a~~ll~~qlk~L~~~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPNvy~ 85 (171)
T KOG0425|consen 6 ASLLLLKQLKELQEEPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPNVYE 85 (171)
T ss_pred hHHHHHHHHHHHhcCCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCCcCC
Confidence 346789999999999999999987775 99999999999999999999999999999999999999
Q ss_pred ----------------------------------HHHHHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHh
Q 033703 67 ----------------------------------VLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKY 110 (113)
Q Consensus 67 ----------------------------------il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~~~~~~~k~ 110 (113)
|+++|.+||.+||.+||+|.|||+.|++|+++|.++|+++|++-
T Consensus 86 ~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIllSiIsmL~~PN~~SPANVDAa~~~Ren~~EykkkV~r~vr~s 163 (171)
T KOG0425|consen 86 DGDVCISILHPPGDDPSGYELPSERWLPVQTVETILLSIISMLNSPNDESPANVDAAKEWRENPEEYKKKVRRCVRRS 163 (171)
T ss_pred CCCEEEEeecCCCCCcccCCChhhccCCccchhHhHHHHHHHHcCCCCCCccchHHHHHHhhCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999864
No 8
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=1.6e-31 Score=172.39 Aligned_cols=112 Identities=38% Similarity=0.702 Sum_probs=107.3
Q ss_pred hHHHHHHHHHHhhcCCCCCeeeeecC-----CCceEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCcH----------
Q 033703 2 ASKRILKELKDLQKDPPTSCSAGPVA-----EDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPK---------- 66 (113)
Q Consensus 2 a~~Rl~~E~~~l~~~~~~~~~~~~~~-----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~---------- 66 (113)
|+.||+.|-+.+.++.+-|+.+.|.. .|+..|.|.|.|+++|+||||.|.+++.||++||++||+
T Consensus 5 ~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~pl~HP 84 (158)
T KOG0424|consen 5 ALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPPLFHP 84 (158)
T ss_pred HHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCCCcCC
Confidence 67899999999999999999998775 479999999999999999999999999999999999999
Q ss_pred ---------------------------HHHHHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhhCC
Q 033703 67 ---------------------------VLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAMG 113 (113)
Q Consensus 67 ---------------------------il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~~~~~~~k~a~~ 113 (113)
||.+||.||.+||..+|+|.+|...|.+|+..|+++||.++++||..
T Consensus 85 NVypsgtVcLsiL~e~~~W~paitikqiL~gIqdLL~~Pn~~~pAq~eA~~~~~~~r~eYekrvr~qak~~a~~ 158 (158)
T KOG0424|consen 85 NVYPSGTVCLSILNEEKDWRPAITIKQILLGIQDLLDTPNITSPAQTEAYTIYCQDRAEYEKRVRAQAKEYAKA 158 (158)
T ss_pred CcCCCCcEehhhhccccCCCchhhHHHHHHHHHHHhcCCCCCCchhhHHHHHHhhCHHHHHHHHHHHHHHhccC
Confidence 89999999999999999999999999999999999999999999863
No 9
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=99.97 E-value=3.4e-31 Score=174.42 Aligned_cols=104 Identities=58% Similarity=1.113 Sum_probs=101.3
Q ss_pred HHHHHHHHHhhcCCCCCeeeeecCCCceEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCcH-----------------
Q 033703 4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPK----------------- 66 (113)
Q Consensus 4 ~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~----------------- 66 (113)
+||++|++++++.++.|+++.++++|+++|+++|.||++|+|+||.|+++|.||++||++||+
T Consensus 2 ~Rl~~E~~~l~~~~~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~~~G~ 81 (141)
T cd00195 2 KRLQKELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVDENGK 81 (141)
T ss_pred chHHHHHHHHHhCCCCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCCCCCC
Confidence 799999999999999999999999999999999999999999999999999999999999999
Q ss_pred -------------------HHHHHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHH
Q 033703 67 -------------------VLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWT 107 (113)
Q Consensus 67 -------------------il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~~~~~~ 107 (113)
||.+|+++|.+|+.++|+|.+||.+|.+|+++|.++|++|+
T Consensus 82 icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~ 141 (141)
T cd00195 82 ICLSILKTHGWSPAYTLRTVLLSLQSLLNEPNPSDPLNAEAAKLYKENREEFKKKAREWT 141 (141)
T ss_pred CchhhcCCCCcCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHhC
Confidence 89999999999999999999999999999999999999874
No 10
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=99.97 E-value=3.5e-31 Score=174.16 Aligned_cols=103 Identities=54% Similarity=1.114 Sum_probs=97.8
Q ss_pred HHHHHHHHhhcCCCCCeeeeecCC-CceEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCcH-----------------
Q 033703 5 RILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPK----------------- 66 (113)
Q Consensus 5 Rl~~E~~~l~~~~~~~~~~~~~~~-~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~----------------- 66 (113)
||++|++++++.++.|+.+.+.++ |+.+|+++|.||++|+|+||.|+++|.||++||++||+
T Consensus 1 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~~~G~ 80 (140)
T PF00179_consen 1 RLQKELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNIDENGR 80 (140)
T ss_dssp HHHHHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB-TTSB
T ss_pred CHHHHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCccceeccccccccccccccccccccccccccccccccccccc
Confidence 899999999999999999998886 99999999999999999999999999999999999999
Q ss_pred -------------------HHHHHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHH
Q 033703 67 -------------------VLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWT 107 (113)
Q Consensus 67 -------------------il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~~~~~~ 107 (113)
||.+|++||.+|+.++|+|.+|+.+|.+|+++|.++||+|.
T Consensus 81 icl~~l~~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~ 140 (140)
T PF00179_consen 81 ICLDILNPESWSPSYTIESILLSIQSLLSEPNPEDPLNEEAAELYKNDREEFEKKAREWA 140 (140)
T ss_dssp BGHGGGTTTTC-TTSHHHHHHHHHHHHHHSTCTTSTSSHHHHHHHHHCHHHHHHHHHHH-
T ss_pred chhhhhhcccCCcccccccHHHHHHHHHhCCCCCCcchHHHHHHHHHCHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999984
No 11
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=9.5e-31 Score=175.51 Aligned_cols=112 Identities=42% Similarity=0.742 Sum_probs=108.1
Q ss_pred hHHHHHHHHHHhhcCC---CCCeeeeecCCCceEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCcH------------
Q 033703 2 ASKRILKELKDLQKDP---PTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPK------------ 66 (113)
Q Consensus 2 a~~Rl~~E~~~l~~~~---~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~------------ 66 (113)
+.+||++|++++.+++ -.||.+....+|+.+..+.|.||++||||||+|.++|++|++|||+||+
T Consensus 4 ~~~ri~~e~k~v~~~~eisq~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIwHPnV 83 (200)
T KOG0418|consen 4 AFKRINREQKEVLDDPEISQAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIWHPNV 83 (200)
T ss_pred HHHHHHHHHHHhccChhhhhcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeeecCCC
Confidence 5799999999999987 6899999999999999999999999999999999999999999999999
Q ss_pred ------------------------HHHHHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhhCC
Q 033703 67 ------------------------VLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAMG 113 (113)
Q Consensus 67 ------------------------il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~~~~~~~k~a~~ 113 (113)
+|++||+||+.|++.+|.+...|++|.+|++.|.+.||.|+..||+|
T Consensus 84 Ss~tGaICLDilkd~Wa~slTlrtvLislQalL~~pEp~dPqDavva~qy~~n~~~F~~TAr~WT~~fA~~ 154 (200)
T KOG0418|consen 84 SSQTGAICLDILKDQWAASLTLRTVLISLQALLCAPEPKDPQDAVVAEQYVDNYEMFYKTARYWTTEFAGG 154 (200)
T ss_pred CcccccchhhhhhcccchhhhHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhhHHHHHHHHHHHHHHHhCC
Confidence 89999999999999999999999999999999999999999999986
No 12
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=99.97 E-value=1.5e-30 Score=172.11 Aligned_cols=108 Identities=59% Similarity=1.130 Sum_probs=104.0
Q ss_pred HHHHHHHHHhhcCCCCCeeeeecCC-CceEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCcH----------------
Q 033703 4 KRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPK---------------- 66 (113)
Q Consensus 4 ~Rl~~E~~~l~~~~~~~~~~~~~~~-~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~---------------- 66 (113)
+||++|++++++.++.|+.+.+.++ |+++|+++|.||++|+|+||.|++.|.||++||++||+
T Consensus 1 ~Rl~~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~~G 80 (145)
T smart00212 1 KRLLKELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDSSG 80 (145)
T ss_pred ChHHHHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECCCC
Confidence 5999999999999999999888775 99999999999999999999999999999999999999
Q ss_pred --------------------HHHHHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhh
Q 033703 67 --------------------VLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 111 (113)
Q Consensus 67 --------------------il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~~~~~~~k~a 111 (113)
||.+|+++|.+|+.++|+|.+|+++|.+|++.|.++|+++++|++
T Consensus 81 ~icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~eaa~~~~~~~~~f~~~~~~~~~k~~ 145 (145)
T smart00212 81 EICLDILKQEKWSPATTLETVLLSIQSLLSEPNPDSPLNADAATLYKKNREEFKKKAREWTKKYA 145 (145)
T ss_pred CEehhhcCCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 889999999999999999999999999999999999999999985
No 13
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.4e-30 Score=168.26 Aligned_cols=106 Identities=36% Similarity=0.700 Sum_probs=101.9
Q ss_pred HHHHHHHHHHhhcCCCCCeeeeecCCCceEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCcH----------------
Q 033703 3 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPK---------------- 66 (113)
Q Consensus 3 ~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~---------------- 66 (113)
.|||++|+..|+....+||++.|+++|++.|.++|.||.+|+|+|-.|++.+.||.+||+.||+
T Consensus 31 ~KRLq~ELm~Lmms~~~gISAFP~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HPNVD~~G 110 (175)
T KOG0421|consen 31 TKRLQSELMGLMMSNTPGISAFPESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPNVDLSG 110 (175)
T ss_pred HHHHHHHHHHHHhcCCCCcccCcCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCCCccccc
Confidence 5999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -------------------HHHHHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHH
Q 033703 67 -------------------VLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQK 109 (113)
Q Consensus 67 -------------------il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~~~~~~~k 109 (113)
||.+||+||-+||.++|+|..||.+|. |.++|++.+.+.-++
T Consensus 111 nIcLDILkdKWSa~YdVrTILLSiQSLLGEPNn~SPLNaqAAelW~-d~~eykk~l~~~Y~~ 171 (175)
T KOG0421|consen 111 NICLDILKDKWSAVYDVRTILLSIQSLLGEPNNSSPLNAQAAELWS-DQEEYKKYLEALYKE 171 (175)
T ss_pred cchHHHHHHHHHHHHhHHHHHHHHHHHhCCCCCCCcchhHHHHHhc-CHHHHHHHHHHHhhc
Confidence 899999999999999999999999998 999999999876554
No 14
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=4.8e-28 Score=155.62 Aligned_cols=111 Identities=37% Similarity=0.727 Sum_probs=103.3
Q ss_pred ChHHHHHHHHHHhhcCCCCCee-eeecCCCceEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCcH-------------
Q 033703 1 MASKRILKELKDLQKDPPTSCS-AGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPK------------- 66 (113)
Q Consensus 1 ~a~~Rl~~E~~~l~~~~~~~~~-~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~------------- 66 (113)
+|.+||.+||.+|++++...+. +..+++|++.|++.|. |++.||..|.|+++|.||.+|||+||+
T Consensus 2 ~a~~Rl~kEL~dl~~~~~~~~rn~~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVD 80 (153)
T KOG0422|consen 2 AAPRRLRKELADLQKNKMKFFRNIEVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVD 80 (153)
T ss_pred chhHHHHHHHHHHHhccHHHHhhhhcccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCC
Confidence 4789999999999999877655 3445679999999998 999999999999999999999999999
Q ss_pred -----------------------HHHHHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhhC
Q 033703 67 -----------------------VLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAM 112 (113)
Q Consensus 67 -----------------------il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~~~~~~~k~a~ 112 (113)
||.++..|+.+|+++.|++.|+|..|.+|+..|.++|.++++||+.
T Consensus 81 e~gqvClPiis~EnWkP~T~teqVlqaLi~liN~P~pe~plr~dlA~ey~~d~~kF~K~Aee~tkK~~e 149 (153)
T KOG0422|consen 81 EKGQVCLPIISAENWKPATRTEQVLQALIALINDPEPEHPLRIDLAEEYIKDPKKFVKNAEEFTKKYSE 149 (153)
T ss_pred CCCceeeeeeecccccCcccHHHHHHHHHHHhcCCCccccchhhHHHHHHHCHHHHHHhHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999984
No 15
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=5.2e-26 Score=150.60 Aligned_cols=109 Identities=34% Similarity=0.641 Sum_probs=97.4
Q ss_pred hHHHHHHHHHHhhcCCCCCeeeeecCCCceEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCcH---------------
Q 033703 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPK--------------- 66 (113)
Q Consensus 2 a~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~--------------- 66 (113)
+-||+..|+..|..+. ..+....+++.+++|.+.||.+|||+||+|+++|.+|++||++.|+
T Consensus 4 ~~rRid~Dv~KL~~s~---yeV~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNIDe~ 80 (189)
T KOG0416|consen 4 GKRRIDTDVMKLLMSD---YEVTIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNIDEA 80 (189)
T ss_pred cccchhhHHHHHHhcC---CeEEEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCchhc
Confidence 4589999999998764 4566677889999999999999999999999999999999999999
Q ss_pred ---------------------HHH-HHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhhCC
Q 033703 67 ---------------------VLL-SICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAMG 113 (113)
Q Consensus 67 ---------------------il~-~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~~~~~~~k~a~~ 113 (113)
|+. -|-.||..||+.+|+|.+||.++.++++.|+++|++|++|||+.
T Consensus 81 SGsVCLDViNQtWSp~yDL~NIfetfLPQLL~YPNp~DPLN~eAAal~l~~~~~Y~~~v~eY~~kYA~~ 149 (189)
T KOG0416|consen 81 SGSVCLDVINQTWSPLYDLVNIFETFLPQLLRYPNPSDPLNGEAAALYLRDPEEYEEKVKEYIKKYATP 149 (189)
T ss_pred cCccHHHHHhhhhhHHHHHHHHHHHHhHHHhcCCCCCCCcccHHHHHHhcCHHHHHHHHHHHHHHhcCh
Confidence 333 24578999999999999999999999999999999999999963
No 16
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=5.5e-25 Score=145.94 Aligned_cols=110 Identities=31% Similarity=0.551 Sum_probs=93.0
Q ss_pred hHHHHHHHHHHhhcCCCCCeeeeecCCCce--EEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCcH-------------
Q 033703 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMF--HWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPK------------- 66 (113)
Q Consensus 2 a~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~--~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~------------- 66 (113)
|+.||++|+.++.--+...+++....++.+ +++++|. |++|.|+||.|+|++.+|+.||+.||+
T Consensus 29 a~lrl~~di~elnLp~t~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~HPNId 107 (184)
T KOG0420|consen 29 ALLRLKKDILELNLPPTCSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVYHPNID 107 (184)
T ss_pred HHHHHHhhhhhccCCCccccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeeccccCCcC
Confidence 678888888887543332222322234444 5999998 999999999999999999999999999
Q ss_pred ----------------------HHHHHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhhC
Q 033703 67 ----------------------VLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAM 112 (113)
Q Consensus 67 ----------------------il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~~~~~~~k~a~ 112 (113)
|+.++++||.+|++++|+|.+||.++.+|++.|...||...+.++-
T Consensus 108 ~~GnVCLnILRedW~P~lnL~sIi~GL~~LF~epn~eDpLN~eAA~~l~~n~e~F~~~Vr~~m~gg~v 175 (184)
T KOG0420|consen 108 LDGNVCLNILREDWRPVLNLNSIIYGLQFLFLEPNPEDPLNKEAAAVLKSNREGFENNVRRAMSGGCV 175 (184)
T ss_pred CcchHHHHHHHhcCccccchHHHHHHHHHHhccCCCcccccHHHHHHHHhCHHHHHHHHHHHHhcCcc
Confidence 8999999999999999999999999999999999999999988764
No 17
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=4e-26 Score=151.69 Aligned_cols=111 Identities=38% Similarity=0.616 Sum_probs=107.2
Q ss_pred HHHHHHHHHHhhcCCCCCeeeeecCCCceEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCcH----------------
Q 033703 3 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPK---------------- 66 (113)
Q Consensus 3 ~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~---------------- 66 (113)
.+.|.+|++++...+++||.+.+.++|.....+.|.||.+|||++|.|++++.+..+||.+||+
T Consensus 12 ik~~~kEl~~l~~~PPdGIKV~~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPNVaaNG 91 (223)
T KOG0423|consen 12 IKQLAKELKSLDESPPDGIKVVVNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPNVAANG 91 (223)
T ss_pred HHHHHHHHHhcccCCCCceEEecChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCCcccCc
Confidence 5789999999999999999999999999999999999999999999999999999999999999
Q ss_pred -------------------HHHHHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhhCC
Q 033703 67 -------------------VLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAMG 113 (113)
Q Consensus 67 -------------------il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~~~~~~~k~a~~ 113 (113)
||..|.+||.+||++|.+|.+|++++.++.+.|.++||.++.-||++
T Consensus 92 EICVNtLKkDW~p~LGirHvLltikCLLI~PnPESALNEeAGkmLLEnYdeYa~rARl~TeIHa~p 157 (223)
T KOG0423|consen 92 EICVNTLKKDWNPSLGIRHVLLTIKCLLIEPNPESALNEEAGKMLLENYDEYARRARLYTEIHAKP 157 (223)
T ss_pred eehhhhhhcccCcccchhhHhhhhheeeecCChHHHHhHHHHHHHHHhHHHHHHHHHHHHHhhcCC
Confidence 89999999999999999999999999999999999999999999863
No 18
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.8e-22 Score=138.27 Aligned_cols=65 Identities=43% Similarity=0.883 Sum_probs=64.0
Q ss_pred hHHHHHHHHHHhhcCCCCCeeeeecCCCceEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCcH
Q 033703 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPK 66 (113)
Q Consensus 2 a~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~ 66 (113)
|.+||++|++.|.++++++|.+.|..+|+++||.+|.||++|||+||.|+.+|.||.+||++||.
T Consensus 6 a~kRl~keY~~l~k~Pv~~i~A~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPa 70 (244)
T KOG0894|consen 6 AVKRLQKEYRALCKDPVPYIVARPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPA 70 (244)
T ss_pred HHHHHHHHHHHHHhCCchhhccCCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCe
Confidence 67999999999999999999999999999999999999999999999999999999999999999
No 19
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=9.5e-20 Score=125.40 Aligned_cols=105 Identities=25% Similarity=0.439 Sum_probs=96.1
Q ss_pred HHHHHHHHHhhcCCCCCeeeeecCCCceEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCC--CCcH---------------
Q 033703 4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPF--KPPK--------------- 66 (113)
Q Consensus 4 ~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~--~pP~--------------- 66 (113)
..|..|+..+.+.+.+||++.|+..|-+.|.++|+ -..|+|.||.|+|+|.+|++||. .-|+
T Consensus 22 y~llAEf~lV~~ekL~gIyviPSyan~l~WFGViF-vr~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~icp~ 100 (258)
T KOG0429|consen 22 YALLAEFVLVCREKLDGIYVIPSYANKLLWFGVIF-VRKGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLICPK 100 (258)
T ss_pred HHHHHHHHHHHhccCCceEEcccccccceEEEEEE-EecccccCceEEEEEEcCccCCCcCCCCeEEeeccccccccCCC
Confidence 35778999999999999999999999999999999 67889999999999999999994 5555
Q ss_pred ----------------------HHHHHHHhhcCCCCCCC-c-cHHHHHHHHHCHHHHHHHHHHHHHH
Q 033703 67 ----------------------VLLSICSLLTDPNPDDP-L-VPEIAHMYKSDKAKYESTARSWTQK 109 (113)
Q Consensus 67 ----------------------il~~i~~ll~~p~~~~p-~-n~~a~~~~~~d~~~f~~~~~~~~~k 109 (113)
||+.+|..|.+|+.+.+ + |++|+.+|.+++++|.++|+++++.
T Consensus 101 skeLdl~raf~eWRk~ehhiwqvL~ylqriF~dpd~si~kl~N~eAa~l~~k~r~ef~~rvqe~vk~ 167 (258)
T KOG0429|consen 101 SKELDLNRAFPEWRKEEHHIWQVLVYLQRIFYDPDVSIDKLINPEAAVLYKKHRDEFRERVQECVKA 167 (258)
T ss_pred ccceeHhhhhhhhhccccHHHHHHHHHHHHhcCcccchhhhcChHHHHHHHHhHHHHHHHHHHHHHH
Confidence 99999999999998887 5 9999999999999999999999874
No 20
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=7.4e-18 Score=107.77 Aligned_cols=64 Identities=30% Similarity=0.711 Sum_probs=61.7
Q ss_pred hHHHHHHHHHHhhcCCCCCeeeeecCCCceEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCcH
Q 033703 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPK 66 (113)
Q Consensus 2 a~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~ 66 (113)
|.+||++|+.+++.+++.|+... ..+|+..|.+.+.|.+||.|+|.+|.+.++||+.||++.|.
T Consensus 16 at~RLqKEl~e~q~~pP~G~~~~-v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPq 79 (161)
T KOG0427|consen 16 ATNRLQKELSEWQNNPPTGFKHR-VTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQ 79 (161)
T ss_pred HHHHHHHHHHHHhcCCCCcceee-cccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCe
Confidence 78999999999999999999887 77999999999999999999999999999999999999998
No 21
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=2.6e-17 Score=115.16 Aligned_cols=64 Identities=42% Similarity=0.921 Sum_probs=61.5
Q ss_pred hHHHHHHHHHHhhcCCCCCeeeeecCCCceEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCcH
Q 033703 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPK 66 (113)
Q Consensus 2 a~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~ 66 (113)
|.|||++|.++++ ++.+.+.+.+-++|+++|+++|.||.+|-|+||+|+.+|.||.+||++||.
T Consensus 12 aVkRlmkEa~El~-~Ptd~yha~plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs 75 (314)
T KOG0428|consen 12 AVKRLMKEAAELK-DPTDHYHAQPLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPS 75 (314)
T ss_pred HHHHHHHHHHHhc-CchhhhhhccchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCe
Confidence 6799999999998 888888899999999999999999999999999999999999999999999
No 22
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=1.9e-10 Score=93.82 Aligned_cols=63 Identities=32% Similarity=0.594 Sum_probs=56.7
Q ss_pred HHHHHHHHHhhcCCCCCeeeeecCCCceEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCcH
Q 033703 4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPK 66 (113)
Q Consensus 4 ~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~ 66 (113)
+..+.|.+-+..+.+.||+++..++-+....++|.|+.+|||.+|.|.|.+.||.+||..||.
T Consensus 854 ~~~~~~~~~~~~~~~~~~~vr~~e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~ 916 (1101)
T KOG0895|consen 854 KKVQTEWKILPLSLPSGIFVRAYEDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPL 916 (1101)
T ss_pred HHHHHHHHhhhccCCCceEEEechHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCc
Confidence 445667777788889999999998887778899999999999999999999999999999999
No 23
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=1.5e-09 Score=88.62 Aligned_cols=64 Identities=45% Similarity=0.738 Sum_probs=62.3
Q ss_pred HHHHHHHHHHhhcCCCCCeeeeecCCCceEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCcH
Q 033703 3 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPK 66 (113)
Q Consensus 3 ~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~ 66 (113)
.+|+++|++.+.++.+.|+.+.+.+..+....+.|.||.+|||++|.|.|.|.||..||..||.
T Consensus 284 skrv~ke~~llskdlpEgifvrp~e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~ 347 (1101)
T KOG0895|consen 284 SKKVAKELKLLSKDLPEGIFVRPDEGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPH 347 (1101)
T ss_pred HHHHHHHhhhhcccCCCCccccccccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCce
Confidence 5899999999999999999999999999999999999999999999999999999999999999
No 24
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=5.8e-09 Score=67.25 Aligned_cols=65 Identities=32% Similarity=0.592 Sum_probs=52.2
Q ss_pred HHHHHHHHHhhcCCCCC-eeeeecC-CC--ceEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCcHHH
Q 033703 4 KRILKELKDLQKDPPTS-CSAGPVA-ED--MFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVL 68 (113)
Q Consensus 4 ~Rl~~E~~~l~~~~~~~-~~~~~~~-~~--~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~il 68 (113)
.||.+|+..-++...++ ++....+ +| +..|...|.||+.|+||+.+|.++|.+.++||..||.+-
T Consensus 8 frlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vr 76 (138)
T KOG0896|consen 8 FRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVR 76 (138)
T ss_pred hhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeE
Confidence 47888888877755444 3443333 34 568999999999999999999999999999999999943
No 25
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=95.84 E-value=0.036 Score=34.15 Aligned_cols=62 Identities=19% Similarity=0.231 Sum_probs=36.4
Q ss_pred HHHHHHHHHhhcCCCCCeeeeecCCCceEEEEEEeC--CCCCCCCCcEEEEEEEcCCCCCCCCcH
Q 033703 4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMG--PSDSPYAGGVFLVTIHFPPDYPFKPPK 66 (113)
Q Consensus 4 ~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~g--p~~t~y~gg~f~~~i~~p~~YP~~pP~ 66 (113)
.+...|+..|+..=+..+ ......+...+.+.+.+ ...+.-....+.+.+.||++||..+|.
T Consensus 4 e~~~~EieaL~sIy~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~ 67 (113)
T PF05773_consen 4 EQQEEEIEALQSIYPDDF-IEIESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPK 67 (113)
T ss_dssp HHHHHHHHHHHHHSSSSE-SSSTSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--E
T ss_pred HHHHHHHHHHHHHcCCCc-cccccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCE
Confidence 456778888765322222 22233445556666621 234444567999999999999999999
No 26
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=95.07 E-value=0.14 Score=31.27 Aligned_cols=35 Identities=17% Similarity=0.366 Sum_probs=23.8
Q ss_pred EEEEEEeCCCCC--CCCCcEEEEEEEcCCCCCCCCcHH
Q 033703 32 HWQATIMGPSDS--PYAGGVFLVTIHFPPDYPFKPPKV 67 (113)
Q Consensus 32 ~w~~~i~gp~~t--~y~gg~f~~~i~~p~~YP~~pP~i 67 (113)
.+.+.+. +.+. .-..-.+.+.+.+|.+||..+|.|
T Consensus 24 ~~~i~l~-~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i 60 (107)
T smart00591 24 EITIKLS-PSSDEGEDQYVSLTLQVKLPENYPDEAPPI 60 (107)
T ss_pred EEEEEEe-cCCCCCCccceEEEEEEECCCCCCCCCCCe
Confidence 4555554 2221 223456899999999999999983
No 27
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=94.93 E-value=0.016 Score=38.20 Aligned_cols=59 Identities=17% Similarity=0.170 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhhcC------C-CCCeeeeecCCCceEEEEEEeCCCCCCCCC--cEEEEEEEcCCCCCCCCcH
Q 033703 3 SKRILKELKDLQKD------P-PTSCSAGPVAEDMFHWQATIMGPSDSPYAG--GVFLVTIHFPPDYPFKPPK 66 (113)
Q Consensus 3 ~~Rl~~E~~~l~~~------~-~~~~~~~~~~~~~~~w~~~i~gp~~t~y~g--g~f~~~i~~p~~YP~~pP~ 66 (113)
..||..|+..|-+. . .+=+.+. +..+-..|.+...- .|+- -.|.+++.+|..||..||.
T Consensus 26 ~~RLKEEy~aLI~Yv~~nK~~DndWF~le-sn~~GT~W~GkCW~----~h~l~kYEF~~eFdIP~tYP~t~pE 93 (161)
T PF08694_consen 26 VQRLKEEYQALIKYVENNKENDNDWFRLE-SNKEGTRWFGKCWY----IHNLLKYEFDLEFDIPVTYPTTAPE 93 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT---EEEE-E-TTSSEEEEEEEE----EETTEEEEEEEEEE--TTTTTS---
T ss_pred HHHHHHHHHHHHHHHHhcccccCCeEEec-cCCCCCccccEEEE----EeeeeeEEEeeecCCCccCCCCCcc
Confidence 47999999987431 1 1222222 33444555555431 1222 3466677789999999999
No 28
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=92.33 E-value=0.22 Score=31.91 Aligned_cols=33 Identities=30% Similarity=0.727 Sum_probs=23.3
Q ss_pred ceEEEEEEeCCCCCCCCCcEE--EEEEEcCCCCCCCCcH
Q 033703 30 MFHWQATIMGPSDSPYAGGVF--LVTIHFPPDYPFKPPK 66 (113)
Q Consensus 30 ~~~w~~~i~gp~~t~y~gg~f--~~~i~~p~~YP~~pP~ 66 (113)
+....++|. -.|+|.+| -+.|.+|.+||..||.
T Consensus 32 LL~L~Gtip----i~y~g~~y~iPi~Iwlp~~yP~~pP~ 66 (121)
T PF05743_consen 32 LLCLYGTIP----ITYKGSTYNIPICIWLPENYPYSPPI 66 (121)
T ss_dssp EEEEEEEEE----ECCTTCCEEEEEEEEE-TTTTTSSSE
T ss_pred EEEEecCcc----cccCCcccceeEEEEEcccCCCCCCE
Confidence 444555553 24888777 5677899999999999
No 29
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.81 E-value=0.29 Score=31.90 Aligned_cols=59 Identities=19% Similarity=0.311 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhhcCCCCCeeeeecCCCceEEEEEEeCCCCCCCCCc----------EEEEEEEcCCCCCCCCcHH
Q 033703 3 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGG----------VFLVTIHFPPDYPFKPPKV 67 (113)
Q Consensus 3 ~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg----------~f~~~i~~p~~YP~~pP~i 67 (113)
.+||..|++.|-.. +....++-..|.-.=.-+.+|-|-|. .|.+++.+|-.||...|.|
T Consensus 29 vqrlkeey~sli~y------vqnnk~~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapei 97 (167)
T KOG3357|consen 29 VQRLKEEYQSLIAY------VQNNKSNDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEI 97 (167)
T ss_pred HHHHHHHHHHHHHH------HHhCcccCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCccc
Confidence 47999999987432 11112222233322234667777663 4667778899999999983
No 30
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=91.47 E-value=0.72 Score=29.72 Aligned_cols=46 Identities=26% Similarity=0.398 Sum_probs=35.9
Q ss_pred CeeeeecCCCceEEEEEEeC--CCCCCCCCcEEEEEEEcCCCCCCCCcH
Q 033703 20 SCSAGPVAEDMFHWQATIMG--PSDSPYAGGVFLVTIHFPPDYPFKPPK 66 (113)
Q Consensus 20 ~~~~~~~~~~~~~w~~~i~g--p~~t~y~gg~f~~~i~~p~~YP~~pP~ 66 (113)
|+..+...+.-..|.+ |.| .+.+.|.+..-.+-|.+|..||..+|-
T Consensus 13 g~~~E~v~eg~~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~D 60 (122)
T PF14462_consen 13 GLRWETVTEGGRRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLD 60 (122)
T ss_pred CceEEEEEeCCccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCC
Confidence 5556655565566665 555 577889999999999999999998886
No 31
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=90.26 E-value=0.31 Score=31.58 Aligned_cols=21 Identities=43% Similarity=1.129 Sum_probs=20.3
Q ss_pred CCcEEEEEEEcCCCCCCCCcH
Q 033703 46 AGGVFLVTIHFPPDYPFKPPK 66 (113)
Q Consensus 46 ~gg~f~~~i~~p~~YP~~pP~ 66 (113)
.|+.+.+.|.+|++||..||.
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~ 54 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPR 54 (133)
T ss_pred CCeEEEEEEEECCcccCcCCE
Confidence 789999999999999999999
No 32
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=88.43 E-value=1.9 Score=27.44 Aligned_cols=17 Identities=35% Similarity=0.735 Sum_probs=14.6
Q ss_pred EEEEEEcCCCCCCCCcH
Q 033703 50 FLVTIHFPPDYPFKPPK 66 (113)
Q Consensus 50 f~~~i~~p~~YP~~pP~ 66 (113)
..+.+.|+++||+.||.
T Consensus 13 ill~~~f~~~fp~~ppf 29 (122)
T KOG0897|consen 13 ILLLDIFDDNFPFMPPF 29 (122)
T ss_pred eEeeeecccCCCCCCCc
Confidence 45677899999999998
No 33
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=84.08 E-value=3.2 Score=29.26 Aligned_cols=58 Identities=22% Similarity=0.313 Sum_probs=33.2
Q ss_pred HHHHHHhhcCCCCCeeeeecCCCceEEEEEEeCCCCCCCCC--cEEEEEEEcCCCCCCCCcH
Q 033703 7 LKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAG--GVFLVTIHFPPDYPFKPPK 66 (113)
Q Consensus 7 ~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~g--g~f~~~i~~p~~YP~~pP~ 66 (113)
..|+..|...-+.-+... .+.+...+.+.|. ...+-++. +.+.+.++++++||..+|.
T Consensus 8 e~E~EaLeSIY~de~~~i-~~~~~~~f~v~iq-~e~~e~d~~~~~~~l~~s~tEnYPDe~Pl 67 (215)
T KOG4018|consen 8 EEELEALESIYPDEFKHI-NSEDPPIFEVTIQ-YEEGENDEPKGSFILVFSLTENYPDEAPL 67 (215)
T ss_pred HHHHHHHHHhccchhhhh-hccCCccceeeee-cccccCCCccccEEEEEEccCCCCCCCcc
Confidence 345555554433333111 1223333666665 33332222 2799999999999999998
No 34
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=83.61 E-value=4 Score=30.12 Aligned_cols=54 Identities=26% Similarity=0.545 Sum_probs=38.6
Q ss_pred HHHHHHHHHhhcCCCCCeeeeecCCCceEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCcH
Q 033703 4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPK 66 (113)
Q Consensus 4 ~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~ 66 (113)
.+|.+|+.++..+... .+. .++++....+.+. ++ .....++|.+|.+||.++|.
T Consensus 102 s~ll~EIe~IGW~kl~--~i~-~d~~ls~i~l~~~---D~---~R~H~l~l~l~~~yp~~~p~ 155 (291)
T PF09765_consen 102 SNLLKEIEAIGWDKLV--QIQ-FDDDLSTIKLKIF---DS---SRQHYLELKLPSNYPFEPPS 155 (291)
T ss_dssp -CHHHHHHHHHCGCCE--EEE-E-CCCSEEEEEEE---TT---CEEEEEEEETTTTTTTSEEE
T ss_pred HHHHHHHHHhccccce--EEe-cCCCccEEEEEEE---cC---CceEEEEEEECCCCCCCCce
Confidence 5678888888665432 221 3577888888887 22 26778899999999999998
No 35
>COG4847 Uncharacterized protein conserved in archaea [Function unknown]
Probab=73.76 E-value=18 Score=22.30 Aligned_cols=78 Identities=22% Similarity=0.262 Sum_probs=46.6
Q ss_pred ceEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCC-------CCcH------------HHHHHHHhhcCCCCCCCccHHHHH
Q 033703 30 MFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPF-------KPPK------------VLLSICSLLTDPNPDDPLVPEIAH 90 (113)
Q Consensus 30 ~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~-------~pP~------------il~~i~~ll~~p~~~~p~n~~a~~ 90 (113)
+-+|.|.+-| +++-+|..|+|.=.=|.+|-. +|-. ++.+++.++.+-.. -.-.++|+.
T Consensus 4 lkewkC~VCg--~~iieGqkFTF~~kGsVH~eCl~~s~~~k~~~dk~~~all~a~~ll~~~ivllkel~~-~Aeseeake 80 (103)
T COG4847 4 LKEWKCYVCG--GTIIEGQKFTFTKKGSVHYECLAESKRKKPGGDKDEVALLLANLLLLYLIVLLKELAV-IAESEEAKE 80 (103)
T ss_pred cceeeEeeeC--CEeeeccEEEEeeCCcchHHHHHHHHhcCcCccHHHHHHHHHHHHHHHHHHHHHHHhh-hcccHHHHH
Confidence 4689998875 778899999984333332211 0000 44455555544210 012356777
Q ss_pred HHHHCHHHHHHHHHHHHHHh
Q 033703 91 MYKSDKAKYESTARSWTQKY 110 (113)
Q Consensus 91 ~~~~d~~~f~~~~~~~~~k~ 110 (113)
..++.++++++.|-.-++|-
T Consensus 81 ~irq~rq~~EklAg~lTkki 100 (103)
T COG4847 81 SIRQVRQEVEKLAGDLTKKI 100 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77778888888888777663
No 36
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=71.31 E-value=20 Score=30.26 Aligned_cols=60 Identities=12% Similarity=0.191 Sum_probs=31.8
Q ss_pred HHHHHHHHhhcCCCCCeeeeecCCCceEEEEEEeCCCCCCCCC-cEEEEEEEcCCCCCC-CCcH
Q 033703 5 RILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAG-GVFLVTIHFPPDYPF-KPPK 66 (113)
Q Consensus 5 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~g-g~f~~~i~~p~~YP~-~pP~ 66 (113)
-|.+|+..|-.. -.++..+..+-.-....+.+-||-.-- .| -..++.|.||.+||. .+|+
T Consensus 424 nLgeE~S~Ig~k-~~nV~fEkidva~Rsctvsln~p~~~~-d~y~flrm~V~FP~nYPn~a~P~ 485 (1081)
T KOG0309|consen 424 NLGEEFSLIGVK-IRNVNFEKIDVADRSCTVSLNCPNHRV-DDYIFLRMLVKFPANYPNNAAPS 485 (1081)
T ss_pred hHHhHHhHhhcc-ccccceEeeccccceEEEEecCCCCcc-ccceeEEEEEeccccCCCCCCCc
Confidence 455666655332 223333322222344556666543222 22 345888999999998 4555
No 37
>KOG4274 consensus Positive cofactor 2 (PC2), subunit of a multiprotein coactivator of RNA polymerase II [Transcription]
Probab=63.99 E-value=67 Score=26.35 Aligned_cols=51 Identities=16% Similarity=0.203 Sum_probs=29.0
Q ss_pred HHHHHHHhhcCCCCCeeeeecC---CCceEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCcH
Q 033703 6 ILKELKDLQKDPPTSCSAGPVA---EDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPK 66 (113)
Q Consensus 6 l~~E~~~l~~~~~~~~~~~~~~---~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~ 66 (113)
|++|+..|.. .|.+.++. +|. +++++.. -++--+- -+++.+|++||...=.
T Consensus 624 lqgElarLD~----kF~v~ld~~~~~nN-~I~liCk-lddk~lP----Pl~lsVP~~YPaq~~~ 677 (742)
T KOG4274|consen 624 LQGELARLDA----KFEVDLDHQRHDNN-HIILICK-LDDKQLP----PLRLSVPTTYPAQNVT 677 (742)
T ss_pred HHHHHHhhcc----ceeecCCcccccCC-eeEEEEE-ecCCCCC----Ceeeeccccccccchh
Confidence 5667777643 35555443 222 4443333 3333222 4899999999997733
No 38
>smart00340 HALZ homeobox associated leucin zipper.
Probab=62.44 E-value=7 Score=20.40 Aligned_cols=15 Identities=27% Similarity=0.507 Sum_probs=11.9
Q ss_pred HHHHHHHHHHhhcCC
Q 033703 3 SKRILKELKDLQKDP 17 (113)
Q Consensus 3 ~~Rl~~E~~~l~~~~ 17 (113)
-+||++|+++|...+
T Consensus 21 NrRL~ke~~eLralk 35 (44)
T smart00340 21 NRRLQKEVQELRALK 35 (44)
T ss_pred HHHHHHHHHHHHhcc
Confidence 389999999997643
No 39
>PF11619 P53_C: Transcription factor P53 - C terminal domain; InterPro: IPR024631 The p53 tumour suppressor [, , , , ] is a protein found in increased amounts in a wide variety of transformed cells. It is also detectable in many proliferating non-transformed cells, but it is undetectable or present at low levels in resting cells. It is frequently mutated or inactivated in many types of cancer. p53 seems to act as a tumour suppressor in some, but probably not all, tumour types. p53 has been implicated in cell cycle regulation, particularly in the monitoring of genomic DNA integrity prior to replication; for this reason it has been dubbed `guardian of the genome'. p53 is a sequence-specific DNA-binding protein and transcription factor. The structure of p53 comprises 4 domains: an N-terminal transactivation domain; a central DNA-binding domain; an oligomerisation domain; and a C-terminal, basic, regulatory domain [, ]. The structure of the oligomerisation domain consists of a dimer of dimers, each dimer consisting of 2 anti-parallel alpha-helices and an anti-parallel beta-sheet. The sheets lie on opposite sides of the tetramer and the helices form an unusual 4-helix bundle [, ]. While the majority of p53 mutations found in human cancers are located in the DNA-binding domain, some are also found in the oligomerisation domain. This entry represents the C-terminal domain of Drosophila transcription factor p53. While the rest of the protein is quite conserved between the different transcription factors such as p53 and p73, the C-terminal domain is highly divergent. The Drosophila p53 structure is characterised by an additional N-terminal beta-strand and a C-terminal helix [].; PDB: 2RP4_B.
Probab=52.88 E-value=43 Score=19.22 Aligned_cols=34 Identities=24% Similarity=0.455 Sum_probs=23.8
Q ss_pred CceEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCcH--HHHHHHHhhc
Q 033703 29 DMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPK--VLLSICSLLT 76 (113)
Q Consensus 29 ~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~--il~~i~~ll~ 76 (113)
+-..|.|.=. .+|.|++.|++|. + +|.+|..|+.
T Consensus 3 ~~~dW~Vsrt-------~dGdYrL~itcp~-------Ke~LlqSIEgmi~ 38 (71)
T PF11619_consen 3 SAADWEVSRT-------LDGDYRLVITCPK-------KEWLLQSIEGMIK 38 (71)
T ss_dssp TT-S-EEEEE-------TTTCEEEEEEESS-------HHHHHHHHHHHHH
T ss_pred ccccceeeec-------cCCceEEEEecCc-------HHHHHHHHHHHHH
Confidence 3456888776 2578999999976 4 6778877765
No 40
>PF12018 DUF3508: Domain of unknown function (DUF3508); InterPro: IPR021897 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 280 amino acids in length. This domain has two conserved sequence motifs: GFC and GLL. This family is also known as UPF0704.
Probab=52.18 E-value=24 Score=25.78 Aligned_cols=28 Identities=18% Similarity=0.165 Sum_probs=25.4
Q ss_pred ccHHHHHHHHHCHHHHHHHHHHHHHHhh
Q 033703 84 LVPEIAHMYKSDKAKYESTARSWTQKYA 111 (113)
Q Consensus 84 ~n~~a~~~~~~d~~~f~~~~~~~~~k~a 111 (113)
.+.+|+.-|..|++.|...+.+.+++.+
T Consensus 239 ~s~~aa~~F~~~P~~yi~~v~~~ar~~p 266 (281)
T PF12018_consen 239 SSREAAYRFAEDPERYIQAVLEKARKNP 266 (281)
T ss_pred CCHHHHHHHHHCHHHHHHHHHHHHhhCH
Confidence 4789999999999999999999998764
No 41
>PF09606 Med15: ARC105 or Med15 subunit of Mediator complex non-fungal; InterPro: IPR019087 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. The proteins in this entry represent subunit Med15 of the Mediator complex. They contain a single copy of the approximately 70 residue ARC105 domain. The ARC105 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, ARC105 is a critical transducer of gene activation signals that control early metazoan development []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 2GUT_A.
Probab=50.25 E-value=5.3 Score=33.53 Aligned_cols=21 Identities=29% Similarity=0.554 Sum_probs=0.0
Q ss_pred CCcEEEEEEEcCCCCCCCCcH
Q 033703 46 AGGVFLVTIHFPPDYPFKPPK 66 (113)
Q Consensus 46 ~gg~f~~~i~~p~~YP~~pP~ 66 (113)
--.+=-+.|++|.+||..+|.
T Consensus 712 LP~VPPl~l~vP~~YP~~sp~ 732 (799)
T PF09606_consen 712 LPSVPPLRLTVPADYPRQSPQ 732 (799)
T ss_dssp ---------------------
T ss_pred CCCCCCeeEeCCCCCCccCCc
Confidence 335566789999999999998
No 42
>KOG3285 consensus Spindle assembly checkpoint protein [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=49.43 E-value=36 Score=23.59 Aligned_cols=38 Identities=21% Similarity=0.335 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHhhcCCCCCeeeeecCCCceEEEEEEeC
Q 033703 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMG 39 (113)
Q Consensus 2 a~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~g 39 (113)
.++|+++|++.+.+.-...++..|.=+..-.+.+.+.-
T Consensus 120 ~~~~iq~EIraviRQItasVtfLP~Le~~ctFdvLiyT 157 (203)
T KOG3285|consen 120 DLKRIQNEIRAVIRQITASVTFLPLLEEICTFDVLIYT 157 (203)
T ss_pred HHHHHHHHHHHHHHHHhhheeecccccceeEEEEEEEe
Confidence 36899999999998877777777776777777777753
No 43
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=47.16 E-value=85 Score=23.95 Aligned_cols=34 Identities=32% Similarity=0.634 Sum_probs=24.1
Q ss_pred CceEEEEEEeCCCCCCCCCcEEE--EEEEcCCCCCCCCcH
Q 033703 29 DMFHWQATIMGPSDSPYAGGVFL--VTIHFPPDYPFKPPK 66 (113)
Q Consensus 29 ~~~~w~~~i~gp~~t~y~gg~f~--~~i~~p~~YP~~pP~ 66 (113)
+++...++| -++|.|.+|. +.|.+.+.||..||.
T Consensus 51 ~ll~~~GTI----p~~~~G~tYnIPV~iWlldtyP~~pP~ 86 (365)
T KOG2391|consen 51 LLLQLDGTI----PVPYQGVTYNIPVIIWLLDTYPYYPPI 86 (365)
T ss_pred chhhccCcc----cccccCCcccceEEEEecccCCCCCCe
Confidence 344444444 3467787775 567799999999998
No 44
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=46.89 E-value=36 Score=27.35 Aligned_cols=27 Identities=7% Similarity=0.156 Sum_probs=23.0
Q ss_pred cHHHHHHHHHCHHHHHHHHHHHHHHhh
Q 033703 85 VPEIAHMYKSDKAKYESTARSWTQKYA 111 (113)
Q Consensus 85 n~~a~~~~~~d~~~f~~~~~~~~~k~a 111 (113)
=.++.++..+|++.|.+.|++..++|.
T Consensus 271 ~eea~~l~~~dp~~~~~~v~~Sl~rhv 297 (546)
T PF01175_consen 271 FEEANELRAEDPEEFKERVQESLARHV 297 (546)
T ss_dssp HHHHHHHHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 367778888899999999999988874
No 45
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=45.01 E-value=38 Score=27.17 Aligned_cols=27 Identities=15% Similarity=0.229 Sum_probs=23.2
Q ss_pred cHHHHHHHHHCHHHHHHHHHHHHHHhh
Q 033703 85 VPEIAHMYKSDKAKYESTARSWTQKYA 111 (113)
Q Consensus 85 n~~a~~~~~~d~~~f~~~~~~~~~k~a 111 (113)
-.++..+..+|++.|.+.|+++.++|.
T Consensus 272 ~ee~~~lr~~dp~~~~~~~~~Sm~rhv 298 (545)
T TIGR01228 272 VEDADKLRQEEPEAYVKAAKQSMAKHV 298 (545)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 367788888899999999999988874
No 46
>PRK05414 urocanate hydratase; Provisional
Probab=44.87 E-value=38 Score=27.26 Aligned_cols=27 Identities=15% Similarity=0.244 Sum_probs=23.4
Q ss_pred cHHHHHHHHHCHHHHHHHHHHHHHHhh
Q 033703 85 VPEIAHMYKSDKAKYESTARSWTQKYA 111 (113)
Q Consensus 85 n~~a~~~~~~d~~~f~~~~~~~~~k~a 111 (113)
-.++..+..+|++.|.+.|+++.++|.
T Consensus 281 ~ee~~~lr~~dp~~~~~~~~~Sm~rhv 307 (556)
T PRK05414 281 LEEAAELRAEDPEEFVKAAKASMARHV 307 (556)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 367888888999999999999988874
No 47
>PF03847 TFIID_20kDa: Transcription initiation factor TFIID subunit A; InterPro: IPR003228 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription [].; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_B.
Probab=44.16 E-value=61 Score=18.50 Aligned_cols=42 Identities=14% Similarity=0.331 Sum_probs=30.9
Q ss_pred HHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhh
Q 033703 70 SICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 111 (113)
Q Consensus 70 ~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~~~~~~~k~a 111 (113)
.|+.|+..-++...+.+++..++.+=-+.|...+-..+.+.|
T Consensus 4 ~l~~Lv~~iDp~~~ld~~vee~Ll~laddFv~~v~~~ac~lA 45 (68)
T PF03847_consen 4 KLQELVKQIDPNEKLDPDVEELLLELADDFVDDVVSFACRLA 45 (68)
T ss_dssp HHHHHHHCC-SS----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888998999999999999999888888888877666655
No 48
>TIGR01633 phi3626_gp14_N putative phage tail component, N-terminal domain. This model represents the best-conserved region of about 125 amino acids, toward the N-terminus, of a family of proteins from temperate phage of a number of Gram-positive bacteria. These phage proteins range in length from 230 to 525 amino acids.
Probab=41.28 E-value=84 Score=19.27 Aligned_cols=57 Identities=14% Similarity=0.075 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhhcCCCCCeeeeecCCCceEEEEEEeCCC--CCCCCCcEEEEEEEcCCCC
Q 033703 3 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPS--DSPYAGGVFLVTIHFPPDY 60 (113)
Q Consensus 3 ~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~--~t~y~gg~f~~~i~~p~~Y 60 (113)
.+.+.++++.+..... ...+..+++--..|.+.+.|.. +....-|.+.+.+.+|+-|
T Consensus 64 ~~~~~~~l~~~L~~~~-~~~L~f~dePd~yy~a~~~~~~~~~~~~~~~~~titF~c~dP~ 122 (124)
T TIGR01633 64 LRELFRELAGWLNSQE-PVPLIFSDEPDKTYYARVDEEIDLDEDTTFGKGTLNFICPDPY 122 (124)
T ss_pred HHHHHHHHHHHhCCCC-CcceEeccCCCcEEEEEEcCccCHHHhhcccEEEEEEEecCCc
Confidence 4566777877765432 2334334443457788777622 1123458899999998733
No 49
>PF09280 XPC-binding: XPC-binding domain; InterPro: IPR015360 Members of this entry adopt a structure consisting of four alpha helices, arranged in an array. They bind specifically and directly to the xeroderma pigmentosum group C protein (XPC) to initiate nucleotide excision repair []. ; GO: 0003684 damaged DNA binding, 0006289 nucleotide-excision repair, 0043161 proteasomal ubiquitin-dependent protein catabolic process; PDB: 1PVE_A 1QZE_A 1OQY_A 1TP4_A 1X3W_B 3ESW_B 2QSG_X 2QSF_X 1X3Z_B 2QSH_X ....
Probab=40.78 E-value=48 Score=18.40 Aligned_cols=22 Identities=5% Similarity=0.215 Sum_probs=18.9
Q ss_pred CccHHHHHHHHHCHHHHHHHHH
Q 033703 83 PLVPEIAHMYKSDKAKYESTAR 104 (113)
Q Consensus 83 p~n~~a~~~~~~d~~~f~~~~~ 104 (113)
.-|++.+.+..+|++.|.....
T Consensus 33 ~~nP~l~q~I~~n~e~Fl~ll~ 54 (59)
T PF09280_consen 33 QSNPQLLQLIQQNPEEFLRLLN 54 (59)
T ss_dssp CCSHHHHHHHHHTHHHHHHHHH
T ss_pred ccCHHHHHHHHHCHHHHHHHHc
Confidence 3589999999999999998764
No 50
>PF04552 Sigma54_DBD: Sigma-54, DNA binding domain; InterPro: IPR007634 This DNA-binding domain is based on peptide fragmentation data. This domain is proximal to DNA in the promoter/holoenzyme complex. Furthermore, this region contains a putative helix-turn-helix motif. At the C terminus, there is a highly conserved region known as the RpoN box and is the signature of the sigma-54 proteins [].; PDB: 2AHQ_A 2O9L_A 2O8K_A.
Probab=38.39 E-value=37 Score=22.81 Aligned_cols=62 Identities=23% Similarity=0.307 Sum_probs=28.1
Q ss_pred CCcEEEEEEEcCCCCCCCCc------HHHHHHHHhhcCCCCCCCc-cHHHHHHHHHCHHHHHHHHHHHHHHh
Q 033703 46 AGGVFLVTIHFPPDYPFKPP------KVLLSICSLLTDPNPDDPL-VPEIAHMYKSDKAKYESTARSWTQKY 110 (113)
Q Consensus 46 ~gg~f~~~i~~p~~YP~~pP------~il~~i~~ll~~p~~~~p~-n~~a~~~~~~d~~~f~~~~~~~~~k~ 110 (113)
.+|+|.++-.|+........ .|...|..++.+=+...|+ +.+.+.++. +.....+|.-|.||
T Consensus 78 ~~Gi~plk~fF~~~~~~~~~~~~S~~~ik~~i~~lI~~Ed~~~PlSD~~i~~~L~---~~gi~isRRTVaKY 146 (160)
T PF04552_consen 78 PRGIFPLKDFFSRSVSSGSGEEFSSEAIKARIKELIEEEDKKKPLSDQEIAELLK---EEGIKISRRTVAKY 146 (160)
T ss_dssp -------S-----SS--SS-SS---TTH-HHHHHHHTTS-TTS---HHHHHHHHT---TTTS---HHHHHHH
T ss_pred CCeeeeHHHhccccccCCCCcccHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHH---HcCCCccHHHHHHH
Confidence 45899999999988775543 3777889999887787786 455666665 33377788888777
No 51
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=36.96 E-value=1.1e+02 Score=19.15 Aligned_cols=20 Identities=35% Similarity=0.773 Sum_probs=16.9
Q ss_pred EEEEEEeCCCCCCCCCcEEEEE
Q 033703 32 HWQATIMGPSDSPYAGGVFLVT 53 (113)
Q Consensus 32 ~w~~~i~gp~~t~y~gg~f~~~ 53 (113)
+|.|.|=| +.+|+|..|+|.
T Consensus 2 kWkC~iCg--~~I~~gqlFTF~ 21 (101)
T PF09943_consen 2 KWKCYICG--KPIYEGQLFTFT 21 (101)
T ss_pred ceEEEecC--CeeeecceEEEe
Confidence 69999976 679999999974
No 52
>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind
Probab=36.70 E-value=84 Score=17.93 Aligned_cols=42 Identities=14% Similarity=0.262 Sum_probs=32.9
Q ss_pred HHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhh
Q 033703 70 SICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 111 (113)
Q Consensus 70 ~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~~~~~~~k~a 111 (113)
.|+.|+..-++...+..+|...+.+=-+.|...+-+-+.++|
T Consensus 6 ~l~~lv~~id~~~~~~~da~~~l~~~~e~fv~~v~~~a~~lA 47 (72)
T cd07981 6 KLQELLKEIDPREQLDPDVEELLLEIADDFVDDVVEDACRLA 47 (72)
T ss_pred HHHHHHHhhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777889999999999888888888776665554
No 53
>PF11333 DUF3135: Protein of unknown function (DUF3135); InterPro: IPR021482 This family of proteins with unkown function appears to be restricted to Proteobacteria.
Probab=34.77 E-value=94 Score=18.52 Aligned_cols=24 Identities=13% Similarity=0.324 Sum_probs=19.6
Q ss_pred HHHHHHHHCHHHHHHHHHHHHHHh
Q 033703 87 EIAHMYKSDKAKYESTARSWTQKY 110 (113)
Q Consensus 87 ~a~~~~~~d~~~f~~~~~~~~~k~ 110 (113)
+...++.+||++|+..-++.++..
T Consensus 8 ~L~~LA~~dPe~fe~lr~~~~ee~ 31 (83)
T PF11333_consen 8 ELKELAQNDPEAFEQLRQELIEEM 31 (83)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHH
Confidence 567788999999999988877654
No 54
>PF12065 DUF3545: Protein of unknown function (DUF3545); InterPro: IPR021932 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 60 to 77 amino acids in length. This protein has two completely conserved residues (R and L) that may be functionally important.
Probab=32.62 E-value=34 Score=19.18 Aligned_cols=13 Identities=38% Similarity=0.588 Sum_probs=10.3
Q ss_pred HHHHHHHHHhhcC
Q 033703 4 KRILKELKDLQKD 16 (113)
Q Consensus 4 ~Rl~~E~~~l~~~ 16 (113)
+||.+||+++.-.
T Consensus 37 ~rL~kEL~d~D~~ 49 (59)
T PF12065_consen 37 QRLRKELQDMDMC 49 (59)
T ss_pred HHHHHHHHHcccc
Confidence 7899999988643
No 55
>PF04314 DUF461: Protein of unknown function (DUF461); InterPro: IPR007410 This entry represents a domain found in of proteins of unknown function, including DR1885 from Deinococcus radiodurans and CC3502 from Caulobacter crescentus (Caulobacter vibrioides), which share a potential metal binding motif H(M)X10MX21HXM. DR1885 was found to bind copper(I) through a histidine and three Mets in a cupredoxin-like fold []. The surface location of the copper-binding site as well as the type of coordination are well poised for metal transfer chemistry, suggesting that DR1885 might transfer copper, taking the role of Cox17 in bacteria (Cox17 being an accessory protein required for correct assembly of eukaryotic cyochrome c oxidase). ; PDB: 2K6W_A 2K6Z_A 2K6Y_A 2K70_A 1X9L_A 2JQA_A.
Probab=31.68 E-value=70 Score=19.73 Aligned_cols=26 Identities=19% Similarity=0.362 Sum_probs=21.4
Q ss_pred EEEEEeCCCCCCCCCcEEEEEEEcCC
Q 033703 33 WQATIMGPSDSPYAGGVFLVTIHFPP 58 (113)
Q Consensus 33 w~~~i~gp~~t~y~gg~f~~~i~~p~ 58 (113)
.++.+.|+...+=.|..+.+.+.|-+
T Consensus 78 ~HlmL~g~~~~l~~G~~v~ltL~f~~ 103 (110)
T PF04314_consen 78 YHLMLMGLKRPLKPGDTVPLTLTFED 103 (110)
T ss_dssp CEEEEECESS-B-TTEEEEEEEEETT
T ss_pred EEEEEeCCcccCCCCCEEEEEEEECC
Confidence 67899999999999999999999865
No 56
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=31.17 E-value=1.1e+02 Score=23.05 Aligned_cols=19 Identities=16% Similarity=0.385 Sum_probs=17.8
Q ss_pred cEEEEEEEcCCCCCCCCcH
Q 033703 48 GVFLVTIHFPPDYPFKPPK 66 (113)
Q Consensus 48 g~f~~~i~~p~~YP~~pP~ 66 (113)
-.+.+.+..++.||...|+
T Consensus 45 vcvtl~m~vs~gYP~esPt 63 (368)
T KOG4445|consen 45 VCVTLEMTVSEGYPAESPT 63 (368)
T ss_pred EEEEEEEecCCCCCCcCCc
Confidence 6789999999999999999
No 57
>PF04881 Adeno_GP19K: Adenovirus GP19K; InterPro: IPR006965 This 19 kDa glycoprotein binds the major histocompatibility (MHC) class I antigens in the endoplasmic reticulum (ER). The ER retention signal at the C terminus of Gp19K causes retention of the complex in the ER, preventing lysis of the cell by cytotoxic T-lymphocytes [].; GO: 0005537 mannose binding, 0050690 regulation of defense response to virus by virus
Probab=29.78 E-value=60 Score=21.22 Aligned_cols=39 Identities=26% Similarity=0.432 Sum_probs=26.7
Q ss_pred CCceEEEEEEeCCCCCCCC-CcEEEEEEEcC----------CCCCCCCcH
Q 033703 28 EDMFHWQATIMGPSDSPYA-GGVFLVTIHFP----------PDYPFKPPK 66 (113)
Q Consensus 28 ~~~~~w~~~i~gp~~t~y~-gg~f~~~i~~p----------~~YP~~pP~ 66 (113)
.|...|.|++.|++|++.. ..+|-+.+-|. ..|-.=||+
T Consensus 45 Gd~~~ytVtV~G~dGs~~~~n~tf~~~FiF~~mCDitm~mskqy~LWPPt 94 (139)
T PF04881_consen 45 GDPEWYTVTVQGPDGSIRKSNNTFMYKFIFYEMCDITMFMSKQYGLWPPT 94 (139)
T ss_pred CCCcceEEEEECCCCcceeccccchheeeHHHHHHHHHHHHHHhCcCCCc
Confidence 5677788999999998874 45555544443 456666775
No 58
>smart00803 TAF TATA box binding protein associated factor. TAFs (TATA box binding protein associated factors) are part of the transcription initiation factor TFIID multimeric protein complex. TFIID is composed of the TATA box binding protein (TBP) and a number of TAFs. The TAFs provide binding sites for many different transcriptional activators and co-activators that modulate transcription initiation by Pol II. TAF proteins adopt a histone-like fold.
Probab=29.14 E-value=1.1e+02 Score=17.13 Aligned_cols=29 Identities=17% Similarity=0.070 Sum_probs=23.9
Q ss_pred CccHHHHHHHHHCHHHHHHHHHHHHHHhh
Q 033703 83 PLVPEIAHMYKSDKAKYESTARSWTQKYA 111 (113)
Q Consensus 83 p~n~~a~~~~~~d~~~f~~~~~~~~~k~a 111 (113)
.++.+++..+..+-+.|.+.+-+-+.+|+
T Consensus 19 ris~~a~~~l~~~~e~rl~~i~~~A~k~~ 47 (65)
T smart00803 19 NLSDEAAKLLAEDVEYRIKEIVQEALKFM 47 (65)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68889999999998888888877666654
No 59
>PF12259 DUF3609: Protein of unknown function (DUF3609); InterPro: IPR022048 This domain family is found in eukaryotes and viruses, and is typically between 348 and 360 amino acids in length.
Probab=28.00 E-value=41 Score=25.68 Aligned_cols=54 Identities=19% Similarity=0.239 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHhhcCCCCCeeeeecCCCceEEEEEEeCCCCCCCCCcEEEEEEEcC
Q 033703 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFP 57 (113)
Q Consensus 2 a~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p 57 (113)
.-++|+.|++.+....+.+..+.+...++....-++.. .....+...-|.|++|
T Consensus 33 sP~~L~~em~~V~~~L~~~~~lp~~~~~m~~ly~l~~v--~~~~~~~~liF~i~VP 86 (361)
T PF12259_consen 33 SPKQLLDEMKNVSSHLPRDWSLPLEKSNMHDLYRLIKV--HFITPDNKLIFVIEVP 86 (361)
T ss_pred CHHHHHHHHHHHHhcCCcccccCccccHHHHHhhhEEE--EEEeeCCEEEEEEEec
Confidence 45899999999977766665543333332222111110 0223355666666665
No 60
>COG4957 Predicted transcriptional regulator [Transcription]
Probab=27.76 E-value=31 Score=22.74 Aligned_cols=18 Identities=33% Similarity=0.813 Sum_probs=14.7
Q ss_pred EEEEEEEcCCCCCCCCcH
Q 033703 49 VFLVTIHFPPDYPFKPPK 66 (113)
Q Consensus 49 ~f~~~i~~p~~YP~~pP~ 66 (113)
.|+-+-.+|.+||+..|.
T Consensus 103 ~YR~KW~LP~dYPMvAPn 120 (148)
T COG4957 103 EYRAKWGLPPDYPMVAPN 120 (148)
T ss_pred HHHHhcCCCCCCCccchH
Confidence 355666799999999997
No 61
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=27.52 E-value=69 Score=22.05 Aligned_cols=20 Identities=35% Similarity=0.508 Sum_probs=18.5
Q ss_pred CcEEEEEEEcCCCCCCCCcH
Q 033703 47 GGVFLVTIHFPPDYPFKPPK 66 (113)
Q Consensus 47 gg~f~~~i~~p~~YP~~pP~ 66 (113)
.|.|+|+-.+|--||..+|.
T Consensus 86 ~G~~~F~TI~PG~Y~gR~~H 105 (188)
T cd03457 86 DGVVTFTTIFPGWYPGRATH 105 (188)
T ss_pred CccEEEEEECCCCCCCCCce
Confidence 49999999999999999988
No 62
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=27.33 E-value=71 Score=20.84 Aligned_cols=20 Identities=30% Similarity=0.590 Sum_probs=18.1
Q ss_pred CcEEEEEEEcCCCCC-CCCcH
Q 033703 47 GGVFLVTIHFPPDYP-FKPPK 66 (113)
Q Consensus 47 gg~f~~~i~~p~~YP-~~pP~ 66 (113)
.|.|.|.-.+|..|| ..||.
T Consensus 65 ~G~y~f~ti~Pg~Y~~~R~~H 85 (146)
T cd00421 65 DGRYRFRTIKPGPYPIGRPPH 85 (146)
T ss_pred CcCEEEEEEcCCCCCCCCCCE
Confidence 399999999999999 88887
No 63
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=27.01 E-value=2.3e+02 Score=23.28 Aligned_cols=19 Identities=21% Similarity=0.632 Sum_probs=16.4
Q ss_pred HCHHHHHHHHHHHHHHhhC
Q 033703 94 SDKAKYESTARSWTQKYAM 112 (113)
Q Consensus 94 ~d~~~f~~~~~~~~~k~a~ 112 (113)
.|+..|....|.+++|||.
T Consensus 397 G~~~~Fd~FLr~Yv~kfa~ 415 (613)
T KOG1047|consen 397 GDPTRFDPFLRAYVHKFAF 415 (613)
T ss_pred CChhhHHHHHHHHHHHhcc
Confidence 3789999999999999974
No 64
>PF14135 DUF4302: Domain of unknown function (DUF4302)
Probab=26.90 E-value=2.2e+02 Score=20.03 Aligned_cols=47 Identities=23% Similarity=0.449 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHhhcCCCCCeeeeecCCCceEEEEEEeCCCCC-CCCCcEEEEEEEcCCCC
Q 033703 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDS-PYAGGVFLVTIHFPPDY 60 (113)
Q Consensus 2 a~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t-~y~gg~f~~~i~~p~~Y 60 (113)
+..||...++++++.. .+...-|.+.+. |... .| || |.+-+.|.++=
T Consensus 10 ~~eR~~e~~~~~k~~L---------~~a~~GW~~~yy-p~~~~~~-GG-y~f~~kF~~~~ 57 (235)
T PF14135_consen 10 PAERINEALAEYKKIL---------TSAPNGWKLEYY-PKTDQSY-GG-YTFLMKFDDDG 57 (235)
T ss_pred HHHHHHHHHHHHHHHH---------hcCCCceEEEEE-CCCCccC-Cc-EEEEEEECCCC
Confidence 5678988888877532 223344888887 5444 35 44 88878877654
No 65
>COG2847 Copper(I)-binding protein [Inorganic ion transport and metabolism]
Probab=25.92 E-value=1.4e+02 Score=19.96 Aligned_cols=26 Identities=23% Similarity=0.396 Sum_probs=23.2
Q ss_pred EEEEEeCCCCCCCCCcEEEEEEEcCC
Q 033703 33 WQATIMGPSDSPYAGGVFLVTIHFPP 58 (113)
Q Consensus 33 w~~~i~gp~~t~y~gg~f~~~i~~p~ 58 (113)
.++.+.|++..+=+|..|.+++.|-+
T Consensus 105 yHvMlm~lK~pl~eGd~v~vtL~f~~ 130 (151)
T COG2847 105 YHVMLMGLKKPLKEGDKVPVTLKFEK 130 (151)
T ss_pred EEEEEeccCCCccCCCEEEEEEEEec
Confidence 57889999999999999999999865
No 66
>PF08872 KGK: KGK domain; InterPro: IPR014971 This protein is found in one or two copies in cyanobacterial proteins. It is named after a short sequence motif.
Probab=25.37 E-value=1.7e+02 Score=18.53 Aligned_cols=28 Identities=14% Similarity=0.307 Sum_probs=21.4
Q ss_pred EEEEEeCCCCCCCCCcEEEE--EEEcCCCCCCC
Q 033703 33 WQATIMGPSDSPYAGGVFLV--TIHFPPDYPFK 63 (113)
Q Consensus 33 w~~~i~gp~~t~y~gg~f~~--~i~~p~~YP~~ 63 (113)
..|-|..+...-|.-|.+++ .|.| +|.+
T Consensus 67 i~CeiL~~g~~~W~kGK~ri~~~leF---~pde 96 (114)
T PF08872_consen 67 IECEILRFGSKGWQKGKVRIKVSLEF---IPDE 96 (114)
T ss_pred eeEEEeccCCCCCccceEEEEEEEEE---ecCC
Confidence 45777767777899999999 7777 5554
No 67
>PF02970 TBCA: Tubulin binding cofactor A; InterPro: IPR004226 The folding pathway of tubulins includes highly specific interactions with a series of cofactors (A, B, C, D and E) after they are released from the eukaryotic chaperonin CCT. Cofactors A and D capture and stabilise tubulin in a quasi-native conformation. Cofactor E binds to the cofactor D-tubulin complex, and interaction with cofactor C then causes the release of tubulin poypeptides in the native state. This family is the tubulin-specific chaperone A.; GO: 0051082 unfolded protein binding, 0007021 tubulin complex assembly, 0005874 microtubule; PDB: 3MXZ_A 1QSD_A 1H7C_A.
Probab=24.57 E-value=63 Score=19.44 Aligned_cols=14 Identities=43% Similarity=0.544 Sum_probs=9.5
Q ss_pred hHHHHHHHHHHhhc
Q 033703 2 ASKRILKELKDLQK 15 (113)
Q Consensus 2 a~~Rl~~E~~~l~~ 15 (113)
+.+||.+|.....+
T Consensus 8 ~vkRL~KE~~~Y~k 21 (90)
T PF02970_consen 8 VVKRLLKEEASYEK 21 (90)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 46788887776544
No 68
>PF09030 Creb_binding: Creb binding; InterPro: IPR014744 This entry represents the interlocking domain of the eukaryotic nuclear receptor coactivators CREBP and p300. The interlocking domain forms a 3-helical non-globular array that forms interlocked heterodimers with its target. Nuclear receptors are ligand-activated transcription factors involved in the regulation of many processes, including development, reproduction and homeostasis. Nuclear receptor coactivators act to modulate the function of nuclear receptors. Coactivators associate with promoters and enhancers primarily through protein-protein contacts to facilitate the interaction between DNA-bound transcription factors and the transcription machinery. Many of these coactivators are structurally related, including CBP (CREB-binding protein) and p300 []. CBP and p300 both have histone acetyltransferase activity (2.3.1.48 from EC). CBP/p300 proteins function synergistically to activate transcription, acting to remodel chromatin and to recruit RNA polymerase II and the basal transcription machinery. CBP is required for proper cell cycle control, differentiation and apoptosis. The interaction of CBP/p300 with transcription factors involves several small domains. The IBiD domain in the C-terminal of CBP is responsible for CBP interaction with IRF-3, as well as with the adenoviral oncoprotein E1A, TIF-2 coactivator, and the IRF homologue KSHV IRF-1 []. ; GO: 0003713 transcription coactivator activity, 0004402 histone acetyltransferase activity, 0006355 regulation of transcription, DNA-dependent, 0016573 histone acetylation, 0000123 histone acetyltransferase complex, 0005634 nucleus; PDB: 2KKJ_A 2C52_A 1JJS_A 2L14_A 1KBH_B 1ZOQ_C.
Probab=22.68 E-value=1.3e+02 Score=18.80 Aligned_cols=47 Identities=19% Similarity=0.362 Sum_probs=35.1
Q ss_pred CcHHHHHHHHhhcCCCCCCC-ccHHHHHHHHHCHHHHHHHHHHHHHHhhC
Q 033703 64 PPKVLLSICSLLTDPNPDDP-LVPEIAHMYKSDKAKYESTARSWTQKYAM 112 (113)
Q Consensus 64 pP~il~~i~~ll~~p~~~~p-~n~~a~~~~~~d~~~f~~~~~~~~~k~a~ 112 (113)
++..|..|..-|.+|+. | -.-.+.++++.|+......+|.-+.||.+
T Consensus 52 ~q~ALQ~LLrTLkSPsS--P~QQQQVLnILkSNPqLMAAFIKQR~aky~~ 99 (104)
T PF09030_consen 52 PQQALQQLLRTLKSPSS--PQQQQQVLNILKSNPQLMAAFIKQRAAKYQA 99 (104)
T ss_dssp STCHHHHHHHCHCSSSS--CHHHHHHHHHHHTSHHHHHHHHHHCCTTCCT
T ss_pred CHHHHHHHHHHhcCCCC--HHHHHHHHHHHhhCHHHHHHHHHHHHHHhhh
Confidence 34466666666666643 5 46788899999999999999888878764
No 69
>PF02969 TAF: TATA box binding protein associated factor (TAF); InterPro: IPR004823 The TATA box binding protein associated factor (TAF) is part of the transcription initiation factor TFIID multimeric protein complex. TFIID plays a central role in mediating promoter responses to various activators and repressors. It binds tightly to TAFII-250 and directly interacts with TAFII-40. TFIID is composed of TATA binding protein (TBP)and a number of TBP-associated factors (TAFS). TAF proteins adopt a histone-like fold.; GO: 0006352 transcription initiation, DNA-dependent, 0005634 nucleus; PDB: 1TAF_B.
Probab=22.11 E-value=1.7e+02 Score=16.65 Aligned_cols=30 Identities=17% Similarity=0.026 Sum_probs=20.2
Q ss_pred CCccHHHHHHHHHCHHHHHHHHHHHHHHhh
Q 033703 82 DPLVPEIAHMYKSDKAKYESTARSWTQKYA 111 (113)
Q Consensus 82 ~p~n~~a~~~~~~d~~~f~~~~~~~~~k~a 111 (113)
+.++.+++..+.+|-+.-.+.+=+-+.|++
T Consensus 19 ~~l~de~a~~La~dveyrlreiiq~a~kfm 48 (66)
T PF02969_consen 19 SNLSDEAAKALAEDVEYRLREIIQEALKFM 48 (66)
T ss_dssp --B-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458899999999987777776665555553
No 70
>PF05678 VQ: VQ motif; InterPro: IPR008889 This short motif is found in a variety of plant proteins. These proteins vary greatly in length and are mostly composed of low complexity regions. They all conserve a short motif FXhVQChTG, where X is any amino acid and h is a hydrophobic amino acid. The function of this motif is uncertain, however one protein in this family has been found to bind the SigA sigma factor Q9LDH1 from SWISSPROT. It would seem plausible that this motif is needed for this activity and that this whole family might be involved in modulating plastid sigma factors.
Probab=21.89 E-value=89 Score=15.03 Aligned_cols=18 Identities=11% Similarity=0.226 Sum_probs=13.5
Q ss_pred HHCHHHHHHHHHHHHHHh
Q 033703 93 KSDKAKYESTARSWTQKY 110 (113)
Q Consensus 93 ~~d~~~f~~~~~~~~~k~ 110 (113)
.-|+..|...|++.+-+.
T Consensus 9 ~~d~~~Fr~lVQ~LTG~~ 26 (31)
T PF05678_consen 9 HTDPSNFRALVQRLTGAP 26 (31)
T ss_pred EeCHHHHHHHHHHhHCcC
Confidence 447888999999876544
No 71
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=21.61 E-value=1.1e+02 Score=20.50 Aligned_cols=19 Identities=26% Similarity=0.653 Sum_probs=17.5
Q ss_pred cEEEEEEEcCCCCC-----CCCcH
Q 033703 48 GVFLVTIHFPPDYP-----FKPPK 66 (113)
Q Consensus 48 g~f~~~i~~p~~YP-----~~pP~ 66 (113)
|.|.|+-.+|.-|| ..||.
T Consensus 73 G~~~f~Ti~Pg~Y~~p~~~~R~~H 96 (158)
T cd03459 73 GRYRFRTIKPGAYPWRNGAWRAPH 96 (158)
T ss_pred CcEEEEEECCCCcCCCCCCCcCCE
Confidence 89999999999999 78887
No 72
>PF15597 Imm36: Immunity protein 36
Probab=21.53 E-value=2.2e+02 Score=17.76 Aligned_cols=28 Identities=21% Similarity=0.233 Sum_probs=19.3
Q ss_pred eeecCCCceEEEEEEeCCCCCCCCCcEEEEEEEc
Q 033703 23 AGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHF 56 (113)
Q Consensus 23 ~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~ 56 (113)
+..++.+...|.+.|. |..+.|.+..+-
T Consensus 24 ~lF~E~~~~ew~v~i~------y~~~kf~Vy~td 51 (101)
T PF15597_consen 24 VLFDEHNNLEWAVHIE------YKNGKFEVYSTD 51 (101)
T ss_pred eeecCCCCCcceEEEE------EeCCEEEEEeec
Confidence 3445678889999998 666777665443
No 73
>TIGR02422 protocat_beta protocatechuate 3,4-dioxygenase, beta subunit. This model represents the beta chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the alpha chain (TIGR02423), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=21.09 E-value=98 Score=21.96 Aligned_cols=17 Identities=12% Similarity=0.595 Sum_probs=15.4
Q ss_pred eEEEEEEeCCCCCCCCC
Q 033703 31 FHWQATIMGPSDSPYAG 47 (113)
Q Consensus 31 ~~w~~~i~gp~~t~y~g 47 (113)
+.|.++|.|..+|+||+
T Consensus 204 y~FDI~Lqg~~etvf~~ 220 (220)
T TIGR02422 204 YRFDIVLRGRRATPFEN 220 (220)
T ss_pred EEEEEEEcCCCcCcCCC
Confidence 78999999999999974
No 74
>PF05709 Sipho_tail: Phage tail protein; InterPro: IPR008841 This family consists of several Siphovirus and other phage tail component proteins as well as some bacterial proteins of unknown function. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; PDB: 4DIV_X 2X8K_C.
Probab=20.70 E-value=2.9e+02 Score=18.85 Aligned_cols=56 Identities=16% Similarity=0.209 Sum_probs=33.6
Q ss_pred HHHHHHHHHhhcCCCCCeeeeecCCCceEEEEEEeCC---CCCCCCCcEEEEEEEcCCCCC
Q 033703 4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGP---SDSPYAGGVFLVTIHFPPDYP 61 (113)
Q Consensus 4 ~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp---~~t~y~gg~f~~~i~~p~~YP 61 (113)
.++.+++..+..... ...+..+++.-..|.+.+.+. +.. -..+.|.+.+.+|+=|-
T Consensus 55 ~~~~~~l~~~l~~~~-~~~l~f~d~p~~~y~~~~~~~~~~~~~-~~~~~~ti~f~c~dPy~ 113 (249)
T PF05709_consen 55 EQKRRELASWLNPKE-PVKLIFDDDPDKYYYAKVSGSPDPDEG-NNSGTFTITFTCPDPYA 113 (249)
T ss_dssp HHHHHHHHHHH--SS--EEEEETTSTT-EEEEEEEEEEE--SS-SSCEEEEEEEEEEEEEE
T ss_pred HHHHHHHHHhhCcCC-CEEEEEECCCCEEEEEEECCccccccc-ceeEEEEEEEEECCcee
Confidence 466778888774433 366666666667888887663 333 44468888888865443
No 75
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=20.68 E-value=1.7e+02 Score=23.49 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=23.0
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHHhh
Q 033703 86 PEIAHMYKSDKAKYESTARSWTQKYA 111 (113)
Q Consensus 86 ~~a~~~~~~d~~~f~~~~~~~~~k~a 111 (113)
.++..+..+|++.|.+.|++..++|.
T Consensus 282 ee~~~lr~~d~~~~~~~a~~sm~~hv 307 (561)
T COG2987 282 EEADELREEDPDKYRKLARASMARHV 307 (561)
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 78888888899999999999888874
No 76
>PF12075 KN_motif: KN motif; InterPro: IPR021939 This small motif is found at the N terminus of Kank proteins and has been called the KN (for Kank N-terminal) motif. This protein is found in eukaryotes. Proteins in this family are typically between 413 to 1202 amino acids in length. This protein is found associated with PF00023 from PFAM. This protein has two conserved sequence motifs: TPYG and LDLDF. Kank1 was obtained by positional cloning of a tumor suppressor gene in renal cell carcinoma, while the other members were found by homology search. The family is involved in the regulation of actin polymerisation and cell motility through signaling pathways containing PI3K/Akt and/or unidentified modulators/effectors [].
Probab=20.36 E-value=53 Score=16.79 Aligned_cols=12 Identities=33% Similarity=1.184 Sum_probs=6.8
Q ss_pred CCCCCCcEEEEEEEc
Q 033703 42 DSPYAGGVFLVTIHF 56 (113)
Q Consensus 42 ~t~y~gg~f~~~i~~ 56 (113)
+||| | |++++.|
T Consensus 5 ~tPY-G--yhiDLDF 16 (39)
T PF12075_consen 5 ETPY-G--YHIDLDF 16 (39)
T ss_pred cCCc-c--eeecchH
Confidence 5666 2 5666554
No 77
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=20.12 E-value=2e+02 Score=16.87 Aligned_cols=30 Identities=13% Similarity=0.298 Sum_probs=23.1
Q ss_pred CCCccHHHHHHHHHCHHHHHHHHHHHHHHh
Q 033703 81 DDPLVPEIAHMYKSDKAKYESTARSWTQKY 110 (113)
Q Consensus 81 ~~p~n~~a~~~~~~d~~~f~~~~~~~~~k~ 110 (113)
..|-+.+|...|..-.....+..+++.++|
T Consensus 24 THP~d~~Al~~y~~~~~~~~~l~~~Ye~~y 53 (78)
T PF12652_consen 24 THPDDQEALEYYNEYSKQRKQLKKEYEKRY 53 (78)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 357788999999777777777777777776
Done!