Query 033703
Match_columns 113
No_of_seqs 132 out of 1065
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 08:29:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033703.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033703hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gpr_A Ubiquitin-conjugating e 100.0 2.1E-39 7.1E-44 214.9 14.8 113 1-113 4-151 (151)
2 2c2v_B Ubiquitin-conjugating e 100.0 1E-38 3.6E-43 212.2 13.5 112 2-113 6-152 (154)
3 1fxt_A Ubiquitin-conjugating e 100.0 9.4E-39 3.2E-43 211.4 12.7 112 1-112 1-149 (149)
4 2r0j_A Ubiquitin carrier prote 100.0 2.1E-38 7.3E-43 209.7 13.8 112 2-113 2-148 (149)
5 1z2u_A Ubiquitin-conjugating e 100.0 2.7E-38 9.4E-43 209.4 14.3 112 1-112 4-150 (150)
6 2ayv_A Ubiquitin-conjugating e 100.0 4.7E-38 1.6E-42 211.2 15.2 111 1-111 21-166 (166)
7 2c4o_A Ubiquitin-conjugating e 100.0 4.9E-38 1.7E-42 211.0 14.7 111 2-112 20-165 (165)
8 1zdn_A Ubiquitin-conjugating e 100.0 4.2E-38 1.4E-42 210.0 14.2 110 2-111 14-158 (158)
9 1jat_A Ubiquitin-conjugating e 100.0 4.1E-38 1.4E-42 209.5 11.9 113 1-113 5-152 (155)
10 2bep_A Ubiquitin-conjugating e 100.0 1.6E-37 5.5E-42 207.4 14.7 112 2-113 9-159 (159)
11 2aak_A UBC1, ubiquitin conjuga 100.0 2.1E-37 7.1E-42 205.5 15.0 111 2-112 5-150 (152)
12 1ayz_A UBC2, ubiquitin-conjuga 100.0 1.7E-37 5.7E-42 209.1 14.7 111 2-112 5-150 (169)
13 3rcz_B SUMO-conjugating enzyme 100.0 1.6E-37 5.5E-42 208.1 14.3 111 2-112 11-163 (163)
14 1yh2_A HSPC150 protein similar 100.0 3.4E-37 1.2E-41 207.6 15.4 112 2-113 5-155 (169)
15 2pwq_A Ubiquitin conjugating e 100.0 3.3E-37 1.1E-41 214.4 15.3 112 2-113 24-171 (216)
16 2f4z_A Tgtwinscan_2721 - E2 do 100.0 3.3E-37 1.1E-41 211.3 14.7 113 1-113 32-193 (193)
17 2e2c_A Ubiquitin conjugating e 100.0 3.2E-37 1.1E-41 205.4 13.8 110 2-112 10-154 (156)
18 3h8k_A Ubiquitin-conjugating e 100.0 9.5E-37 3.2E-41 204.5 15.4 112 2-113 4-164 (164)
19 3k9o_A Ubiquitin-conjugating e 100.0 7.7E-37 2.6E-41 210.8 15.2 113 1-113 5-156 (201)
20 3bzh_A Ubiquitin-conjugating e 100.0 9.4E-37 3.2E-41 209.2 15.2 111 2-112 49-194 (194)
21 2gjd_A Ubiquitin-conjugating e 100.0 1.1E-36 3.7E-41 203.0 14.6 111 2-112 5-157 (157)
22 2grr_A Ubiquitin-conjugating e 100.0 1.1E-36 3.9E-41 203.7 13.8 112 2-113 8-161 (161)
23 1i7k_A Ubiquitin-conjugating e 100.0 2E-36 6.7E-41 205.4 13.1 111 2-113 31-176 (179)
24 2ucz_A UBC7, ubiquitin conjuga 100.0 4.5E-36 1.5E-40 201.4 14.3 111 2-112 5-164 (165)
25 1wzv_A Ubiquitin-conjugating e 100.0 3E-36 1E-40 200.5 13.2 111 1-112 4-151 (155)
26 3e46_A Ubiquitin-conjugating e 100.0 9.1E-36 3.1E-40 211.2 14.9 112 2-113 58-208 (253)
27 1tte_A Ubiquitin-conjugating e 100.0 4.7E-36 1.6E-40 208.5 10.0 113 1-113 2-151 (215)
28 2onu_A Ubiquitin-conjugating e 100.0 1E-35 3.5E-40 197.4 10.9 109 2-113 3-148 (152)
29 3fn1_B NEDD8-conjugating enzym 100.0 4.8E-35 1.6E-39 196.8 13.6 110 2-112 15-167 (167)
30 4ddg_A Ubiquitin-conjugating e 100.0 5.2E-35 1.8E-39 219.0 14.5 113 1-113 3-150 (399)
31 1yrv_A Ubiquitin-conjugating l 100.0 9.5E-35 3.3E-39 195.6 12.7 107 2-109 24-168 (169)
32 2z5d_A Ubiquitin-conjugating e 100.0 1.5E-34 5E-39 196.1 12.7 107 2-112 26-169 (179)
33 3rz3_A Ubiquitin-conjugating e 100.0 2.6E-34 8.8E-39 195.7 13.4 110 2-111 8-172 (183)
34 1c4z_D UBCH7, ubiquitin conjug 100.0 1.9E-35 6.6E-40 196.4 7.6 112 1-113 2-150 (154)
35 2y9m_A Ubiquitin-conjugating e 100.0 8E-34 2.7E-38 191.6 13.7 111 2-112 7-168 (172)
36 2awf_A Ubiquitin-conjugating e 100.0 4.1E-34 1.4E-38 193.0 10.6 106 1-106 17-172 (172)
37 1yf9_A Ubiquitin carrier prote 100.0 3E-33 1E-37 188.6 13.4 107 2-112 13-156 (171)
38 1y8x_A Ubiquitin-conjugating e 100.0 2.7E-33 9.2E-38 187.1 12.9 105 2-109 7-147 (160)
39 2nvu_C NEDD8-conjugating enzym 100.0 6.7E-33 2.3E-37 188.2 12.6 105 2-109 27-167 (180)
40 3o2u_A NEDD8-conjugating enzym 100.0 3.2E-32 1.1E-36 186.3 11.5 106 2-110 30-177 (190)
41 4ds2_A Ubiquitin-conjugating e 100.0 4.7E-31 1.6E-35 177.3 10.3 104 2-105 9-164 (167)
42 2q0v_A Ubiquitin-conjugating e 100.0 2E-29 7E-34 167.6 8.5 94 2-95 22-156 (156)
43 3ceg_A Baculoviral IAP repeat- 100.0 8.7E-29 3E-33 180.1 10.4 111 2-112 77-243 (323)
44 1jat_B Ubiquitin-conjugating e 99.9 1.7E-28 6E-33 160.3 5.2 91 2-92 7-138 (138)
45 2a4d_A Ubiquitin-conjugating e 99.9 3.9E-27 1.3E-31 157.1 9.7 88 2-89 26-156 (160)
46 2fo3_A Ubiquitin-conjugating e 99.9 1.5E-26 5.1E-31 148.8 9.3 80 2-81 7-122 (125)
47 2f4w_A Ubiquitin-conjugating e 99.9 6.3E-26 2.2E-30 154.7 12.7 82 1-82 14-131 (187)
48 2h2y_A Ubiquitin-conjugating e 99.9 7.5E-26 2.6E-30 147.4 10.6 65 2-66 21-85 (136)
49 2hlw_A Ubiquitin-conjugating e 99.9 1.2E-26 4.2E-31 156.1 5.9 88 2-89 36-166 (170)
50 2a7l_A Hypothetical ubiquitin- 99.9 3E-24 1E-28 139.8 8.7 65 3-67 24-90 (136)
51 1zuo_A Hypothetical protein LO 99.9 7.4E-25 2.5E-29 149.3 1.3 102 2-111 28-181 (186)
52 2z6o_A UFM1-conjugating enzyme 99.6 1.7E-16 5.8E-21 105.3 1.6 59 3-67 34-102 (172)
53 3kpa_A Probable ubiquitin fold 98.9 1.7E-10 5.9E-15 75.2 1.4 59 3-67 36-104 (168)
54 3r3q_A Suppressor protein STP2 98.8 2E-08 6.9E-13 66.6 6.8 63 4-66 31-99 (162)
55 3obq_A Tumor susceptibility ge 97.4 0.0002 6.8E-09 46.6 4.1 36 28-67 51-88 (146)
56 2day_A Ring finger protein 25; 95.7 0.11 3.7E-06 32.3 8.5 62 5-66 12-77 (128)
57 2ebm_A RWD domain-containing p 95.4 0.079 2.7E-06 32.9 6.8 61 4-66 13-73 (128)
58 2yz0_A Serine/threonine-protei 95.0 0.17 5.7E-06 31.8 7.6 61 5-66 14-80 (138)
59 2daw_A RWD domain containing p 93.9 0.4 1.4E-05 30.8 7.7 18 49-66 76-93 (154)
60 2ebk_A RWD domain-containing p 93.2 0.25 8.4E-06 30.6 5.6 60 6-66 12-74 (128)
61 1ukx_A GCN2, GCN2 EIF2alpha ki 89.3 0.21 7.2E-06 31.2 2.3 61 5-66 14-81 (137)
62 2dax_A Protein C21ORF6; RWD do 89.1 0.9 3.1E-05 28.9 5.3 19 48-66 73-91 (152)
63 3zqs_A E3 ubiquitin-protein li 86.4 2.8 9.7E-05 28.0 6.5 53 4-66 4-56 (186)
64 2cwb_A Chimera of immunoglobul 84.6 0.19 6.4E-06 30.9 0.0 34 79-112 22-55 (108)
65 3u3c_B Paxillin LD2 peptide; 4 79.3 1.6 5.5E-05 19.1 2.0 19 3-21 7-25 (26)
66 2rp4_A Transcription factor P5 66.5 15 0.00051 20.6 5.9 34 29-76 8-43 (76)
67 1zoq_C CREB-binding protein, i 53.3 10 0.00034 19.3 2.1 39 73-113 8-47 (47)
68 2fkn_A Urocanate hydratase; ro 42.9 29 0.001 26.8 4.1 27 85-111 277-303 (552)
69 1x87_A Urocanase protein; stru 42.5 30 0.001 26.7 4.1 27 85-111 276-302 (551)
70 1uwk_A Urocanate hydratase; hy 42.1 31 0.001 26.7 4.1 27 85-111 281-307 (557)
71 2f4m_B UV excision repair prot 40.1 31 0.0011 18.6 2.9 20 84-103 37-56 (61)
72 1pve_A HHR23B, UV excision rep 37.1 32 0.0011 19.2 2.8 22 83-104 38-59 (72)
73 1h3o_B Transcription initiatio 37.0 46 0.0016 18.7 3.4 42 70-111 10-51 (76)
74 3kxt_A Chromatin protein CREN7 33.7 30 0.001 18.3 2.1 14 47-62 43-56 (56)
75 2jrw_A Cyclic extended PEP.1; 33.1 14 0.00048 16.0 0.6 6 55-60 6-11 (26)
76 2k6w_A Putative uncharacterize 29.5 52 0.0018 20.0 3.0 26 33-58 82-107 (120)
77 1kbh_B CREB-binding protein, n 29.1 70 0.0024 17.0 5.4 46 67-113 9-54 (59)
78 1taf_B TFIID TBP associated fa 27.2 84 0.0029 17.3 3.8 30 82-111 22-51 (70)
79 3g9r_A Fusion complex of HIV-1 26.5 45 0.0016 16.3 1.9 12 3-14 30-41 (42)
80 4div_S ORF46; distal tail prot 26.2 1.4E+02 0.0049 20.0 5.2 55 4-60 89-146 (253)
81 2lw9_A Unconventionnal myosin- 24.9 44 0.0015 17.2 1.7 15 3-17 8-22 (51)
82 1x9l_A CUI-DR1885; copper bind 23.4 54 0.0018 20.8 2.4 26 33-58 107-132 (149)
83 4dac_A Computationally designe 20.5 70 0.0024 14.0 1.8 13 3-15 10-22 (28)
No 1
>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}
Probab=100.00 E-value=2.1e-39 Score=214.95 Aligned_cols=113 Identities=62% Similarity=1.190 Sum_probs=110.2
Q ss_pred ChHHHHHHHHHHhhcCCCCCeeeeecCCCceEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCcH--------------
Q 033703 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPK-------------- 66 (113)
Q Consensus 1 ~a~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~-------------- 66 (113)
+|.+||++|+++++++++.|+++.+.++|+++|+++|.||++|+|+||.|+++|.||++||++||+
T Consensus 4 ~a~~RL~kEl~~l~~~~~~~i~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~ 83 (151)
T 4gpr_A 4 MAMRRIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHPNINK 83 (151)
T ss_dssp HHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCSSSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCT
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEcCCCceEEEEEEeCCCCCCcCCCEEEEEEECCCCCCCCcceeEEecCcccceECC
Confidence 478999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ---------------------HHHHHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhhCC
Q 033703 67 ---------------------VLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAMG 113 (113)
Q Consensus 67 ---------------------il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~~~~~~~k~a~~ 113 (113)
||.+|++||.+||+++|+|.+||++|++|+++|.++||+|+++||++
T Consensus 84 ~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~ar~~~~~ya~p 151 (151)
T 4gpr_A 84 NGVICLDILKDQWSPALTLSRVLLSISSLLTDPNPSDPLDPEVANVLRANKKQFEDTAREWTRMYARP 151 (151)
T ss_dssp TCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHCCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCCC
T ss_pred CCEEEcccccCCCCCCCcHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Confidence 89999999999999999999999999999999999999999999985
No 2
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1e-38 Score=212.18 Aligned_cols=112 Identities=42% Similarity=0.781 Sum_probs=107.1
Q ss_pred hHHHHHHHHHHhhcCCCCCeeeeecCCCceEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCcH---------------
Q 033703 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPK--------------- 66 (113)
Q Consensus 2 a~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~--------------- 66 (113)
|.+||++|+++++++++.|+++.+.++|+++|+++|.||++|+|+||.|+++|.||++||++||+
T Consensus 6 ~~~RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~ 85 (154)
T 2c2v_B 6 LPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKL 85 (154)
T ss_dssp CCHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBCTT
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEECCCchheEEEEEECCCCCCcCCCeEEEEEEcCCCCCCCCCEEEeecCcccCcCccC
Confidence 67999999999999999999999999999999999999999999999999999999999999999
Q ss_pred --------------------HHHHHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhhCC
Q 033703 67 --------------------VLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAMG 113 (113)
Q Consensus 67 --------------------il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~~~~~~~k~a~~ 113 (113)
||.+|++||.+||+++|+|.+||++|++|+++|.++||+|+++||++
T Consensus 86 G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~pn~~~p~n~~aa~~~~~d~~~f~~~ar~~~~~~a~~ 152 (154)
T 2c2v_B 86 GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAMN 152 (154)
T ss_dssp CBBCCHHHHTSCCTTCCHHHHHHHHHHHTTSCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred CeEEchhccCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Confidence 88999999999999999999999999999999999999999999974
No 3
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Probab=100.00 E-value=9.4e-39 Score=211.38 Aligned_cols=112 Identities=42% Similarity=0.825 Sum_probs=109.0
Q ss_pred ChHHHHHHHHHHhhcCCCCCeeeeecCC-CceEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCcH-------------
Q 033703 1 MASKRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPK------------- 66 (113)
Q Consensus 1 ~a~~Rl~~E~~~l~~~~~~~~~~~~~~~-~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~------------- 66 (113)
||.+||++|+++++++++.|+++.+.++ |+++|+++|.||++|||+||.|+++|.||++||++||+
T Consensus 1 ~~~~RL~~El~~l~~~~~~~i~~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPni~ 80 (149)
T 1fxt_A 1 SRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNIS 80 (149)
T ss_dssp CCHHHHHHHHHHHHHCGGGCCEEEESSSSCSSEEEEEEECCSSSTTCSSEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred ChHHHHHHHHHHHHhCCCCCEEEEECCCCCceEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCCccCCCc
Confidence 6889999999999999999999999887 99999999999999999999999999999999999999
Q ss_pred -----------------------HHHHHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhhC
Q 033703 67 -----------------------VLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAM 112 (113)
Q Consensus 67 -----------------------il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~~~~~~~k~a~ 112 (113)
||.+|++||.+|++++|+|.+||++|++|+++|.++||+|+++||+
T Consensus 81 ~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~a~~~~~~~a~ 149 (149)
T 1fxt_A 81 SVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYAS 149 (149)
T ss_dssp SSSCCBCCHHHHTSCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHHHHCSSHHHHHHHHHHHHHCC
T ss_pred CCCCeEeCCcCCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence 8999999999999999999999999999999999999999999996
No 4
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A
Probab=100.00 E-value=2.1e-38 Score=209.68 Aligned_cols=112 Identities=43% Similarity=0.819 Sum_probs=109.0
Q ss_pred hHHHHHHHHHHhhcCCCCCeeeeecCCCceEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCcH---------------
Q 033703 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPK--------------- 66 (113)
Q Consensus 2 a~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~--------------- 66 (113)
+.+||++|+++++++++.|+++.++++|+++|+++|.||++|+|+||.|+++|.||++||++||+
T Consensus 2 ~~~RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~ 81 (149)
T 2r0j_A 2 IPRRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKL 81 (149)
T ss_dssp CCHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCCBTTBCTT
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEeCCcccCCCCCeeEeccCCccCCCCCC
Confidence 57999999999999999999999999999999999999999999999999999999999999999
Q ss_pred --------------------HHHHHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhhCC
Q 033703 67 --------------------VLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAMG 113 (113)
Q Consensus 67 --------------------il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~~~~~~~k~a~~ 113 (113)
||.+|++||.+|++++|+|.+||++|.+|+++|.++||+|+++||++
T Consensus 82 G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a~~ 148 (149)
T 2r0j_A 82 GRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLDSKVAEHFKQDKNDAEHVARQWNKIYANN 148 (149)
T ss_dssp CBBCCGGGTTTCCTTSCHHHHHHHHHHHHHSCCTTSCSSCHHHHHHHHCHHHHHHHHHHHHHHHSCC
T ss_pred CEEechhcCCCCCCCCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHccC
Confidence 89999999999999999999999999999999999999999999974
No 5
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Probab=100.00 E-value=2.7e-38 Score=209.35 Aligned_cols=112 Identities=76% Similarity=1.385 Sum_probs=109.0
Q ss_pred ChHHHHHHHHHHhhcCCCCCeeeeecCCCceEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCcH--------------
Q 033703 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPK-------------- 66 (113)
Q Consensus 1 ~a~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~-------------- 66 (113)
+|.+||++|+++++++++.|+++.+.++|+++|+++|.||++|+|+||.|+++|.||++||++||+
T Consensus 4 ~~~~RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~ 83 (150)
T 1z2u_A 4 MALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS 83 (150)
T ss_dssp HHHHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCT
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEECCCcceEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCcEEEEecCcccCcCCC
Confidence 478999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ---------------------HHHHHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhhC
Q 033703 67 ---------------------VLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAM 112 (113)
Q Consensus 67 ---------------------il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~~~~~~~k~a~ 112 (113)
||.+|++||.+||+++|+|.+||++|.+|+++|.++||+|+++||+
T Consensus 84 ~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~pn~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a~ 150 (150)
T 1z2u_A 84 NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQKYAM 150 (150)
T ss_dssp TCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred CCeEeeccccCCCCCCCCHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 8999999999999999999999999999999999999999999996
No 6
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=4.7e-38 Score=211.24 Aligned_cols=111 Identities=79% Similarity=1.382 Sum_probs=108.3
Q ss_pred ChHHHHHHHHHHhhcCCCCCeeeeecCCCceEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCcH--------------
Q 033703 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPK-------------- 66 (113)
Q Consensus 1 ~a~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~-------------- 66 (113)
++.+||++|+++++++++.|+++.++++|+++|+++|.||++|||+||.|+++|.||++||++||+
T Consensus 21 ~~~~RL~kEl~~l~~~~~~gi~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNI~~ 100 (166)
T 2ayv_A 21 GALKRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYHPNINS 100 (166)
T ss_dssp THHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTTBCT
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEcCCCcceeeEEEECCCCCCcCCCEEEEEEeCCCcCCCCCceeeeccCCcCCcCCC
Confidence 478999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ---------------------HHHHHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhh
Q 033703 67 ---------------------VLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 111 (113)
Q Consensus 67 ---------------------il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~~~~~~~k~a 111 (113)
||.+|++||.+||+++|+|.+||++|.+|+++|.++||+|+++||
T Consensus 101 ~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~pn~~~Pln~~aa~l~~~d~~~f~~~ar~~~~~~A 166 (166)
T 2ayv_A 101 QGAICLDILKDQWSPALTISKVLLSISSLLTDPNPDDPLVPEIAHLYKSDRMRYDQTAREWSQKYA 166 (166)
T ss_dssp TCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred CCeEEcccccccCCCCCcHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 899999999999999999999999999999999999999999997
No 7
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Probab=100.00 E-value=4.9e-38 Score=211.01 Aligned_cols=111 Identities=78% Similarity=1.398 Sum_probs=108.6
Q ss_pred hHHHHHHHHHHhhcCCCCCeeeeecCCCceEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCcH---------------
Q 033703 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPK--------------- 66 (113)
Q Consensus 2 a~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~--------------- 66 (113)
|.+||++|+++++++++.||++.+.++|+++|+++|.||++|+|+||.|+++|.||++||++||+
T Consensus 20 ~~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegg~f~l~i~fp~~YP~~PP~v~F~T~i~HPnV~~~ 99 (165)
T 2c4o_A 20 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSN 99 (165)
T ss_dssp HHHHHHHHHHHHHSSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTTBCTT
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEcCCCcceeEEEEECCCCCCccCceEEEEEECCCcCCCCCCEEEEecCCcCCcCCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999
Q ss_pred --------------------HHHHHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhhC
Q 033703 67 --------------------VLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAM 112 (113)
Q Consensus 67 --------------------il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~~~~~~~k~a~ 112 (113)
||.+|++||.+||+++|+|.+||++|.+|+++|.++||+|+++||+
T Consensus 100 G~ICl~iL~~~W~P~~ti~~vL~si~~ll~~pn~~~P~n~~aa~~~~~d~~~y~~~ar~~~~~~a~ 165 (165)
T 2c4o_A 100 GSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM 165 (165)
T ss_dssp CBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHTTC
T ss_pred CeEeehhhcCCCCCcCcHHHHHHHHHHHHhCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 8999999999999999999999999999999999999999999996
No 8
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=4.2e-38 Score=210.04 Aligned_cols=110 Identities=36% Similarity=0.618 Sum_probs=107.6
Q ss_pred hHHHHHHHHHHhhcCCCCCeeeeecCCCceEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCcH---------------
Q 033703 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPK--------------- 66 (113)
Q Consensus 2 a~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~--------------- 66 (113)
+.+||++|++++++++++|+++.++++|+++|+++|.||++|+|+||.|+++|.||++||++||+
T Consensus 14 ~~~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~ 93 (158)
T 1zdn_A 14 IIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGAN 93 (158)
T ss_dssp HHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTT
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEECCCChhheeEEEECCCCCCccCcEEEEEEEcCCCCCCCCCEEEeccCcccCCCCCC
Confidence 57999999999999999999999999999999999999999999999999999999999999999
Q ss_pred --------------------HHHHHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhh
Q 033703 67 --------------------VLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 111 (113)
Q Consensus 67 --------------------il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~~~~~~~k~a 111 (113)
||.+|++||.+||+++|+|.+||++|++|+++|.++||+|+++||
T Consensus 94 G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~pn~~~p~n~~aa~~~~~d~~~f~~~a~~~t~~~A 158 (158)
T 1zdn_A 94 GEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTEIHG 158 (158)
T ss_dssp SBBCHHHHTTTCCTTCCHHHHHHHHHHHHHSCCGGGCSSHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred CEEehhhcCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 899999999999999999999999999999999999999999998
No 9
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Probab=100.00 E-value=4.1e-38 Score=209.51 Aligned_cols=113 Identities=41% Similarity=0.735 Sum_probs=109.2
Q ss_pred ChHHHHHHHHHHhhcCCCCCeeeeecCCCceEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCcH--------------
Q 033703 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPK-------------- 66 (113)
Q Consensus 1 ~a~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~-------------- 66 (113)
+|.+||++|+++|+++++.||++.++++|+++|+++|.||++|+|+||.|+++|.||++||++||+
T Consensus 5 ~~~~RL~kE~~~l~~~~~~~i~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~ 84 (155)
T 1jat_A 5 SLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDR 84 (155)
T ss_dssp SCCHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCCCBTTBCT
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEECCCchhEEEEEEECCCCCCccCcEEEEEEEcCCCCCCCCCcceeecccccCCCCC
Confidence 367999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ---------------------HHHHHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhhCC
Q 033703 67 ---------------------VLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAMG 113 (113)
Q Consensus 67 ---------------------il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~~~~~~~k~a~~ 113 (113)
||.+|++||.+||+++|+|.+||++|++|+++|.++||+|+++||++
T Consensus 85 ~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~r~~~~~~a~~ 152 (155)
T 1jat_A 85 LGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYAKK 152 (155)
T ss_dssp TCCBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSTTCCTTHHHHHHCHHHHHHHHHHHHHHHSEE
T ss_pred CCEEEchhhccCCCCCCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhccc
Confidence 89999999999999999999999999999999999999999999963
No 10
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A
Probab=100.00 E-value=1.6e-37 Score=207.42 Aligned_cols=112 Identities=38% Similarity=0.717 Sum_probs=108.1
Q ss_pred hHHHHHHHHHHhhcC---CCCCeeeeecCCCceEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCcH------------
Q 033703 2 ASKRILKELKDLQKD---PPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPK------------ 66 (113)
Q Consensus 2 a~~Rl~~E~~~l~~~---~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~------------ 66 (113)
|.+||++|+++|++. ++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+
T Consensus 9 a~~RL~kEl~~l~~~~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPni 88 (159)
T 2bep_A 9 AVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNI 88 (159)
T ss_dssp HHHHHHHHHHHHHHCHHHHTTSEEEEECSSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred HHHHHHHHHHHHHhcCCCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEeCCCcCCCCCCEEEeeCCCCccCC
Confidence 679999999999985 57899999999999999999999999999999999999999999999999
Q ss_pred ------------------------HHHHHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhhCC
Q 033703 67 ------------------------VLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAMG 113 (113)
Q Consensus 67 ------------------------il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~~~~~~~k~a~~ 113 (113)
||.+|++||.+|++++|+|.+||++|++|+++|.++||+|+++||+|
T Consensus 89 ~~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~~ 159 (159)
T 2bep_A 89 SSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGA 159 (159)
T ss_dssp CTTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCEEeChhhhccCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhhcC
Confidence 89999999999999999999999999999999999999999999986
No 11
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Probab=100.00 E-value=2.1e-37 Score=205.51 Aligned_cols=111 Identities=41% Similarity=0.817 Sum_probs=108.4
Q ss_pred hHHHHHHHHHHhhcCCCCCeeeeecCCCceEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCcH---------------
Q 033703 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPK--------------- 66 (113)
Q Consensus 2 a~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~--------------- 66 (113)
|.+||++|+++++++++.|+++.+.++|+++|+++|.||++|+|+||.|+++|.||++||++||+
T Consensus 5 a~~RL~~E~~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~ 84 (152)
T 2aak_A 5 ARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYAD 84 (152)
T ss_dssp HHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTT
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEeCCCCccEEEEEEeCCCCCCccCCEEEEEEECCCCCCCCCCEEEEecCcccCCCCCC
Confidence 67999999999999999999999999999999999999999999999999999999999999999
Q ss_pred --------------------HHHHHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhhC
Q 033703 67 --------------------VLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAM 112 (113)
Q Consensus 67 --------------------il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~~~~~~~k~a~ 112 (113)
||.+|++||.+|++++|+|.+||++|.+|+++|.++||+|+++||+
T Consensus 85 G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a~ 150 (152)
T 2aak_A 85 GSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSESKREYNRRVRDVVEQSWT 150 (152)
T ss_dssp SBBCCGGGTTSCCTTCCHHHHHHHHHHHHTSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred CEEechhhcCCCCCCCcHHHHHHHHHHHHhCCCCCccccHHHHHHHHHCHHHHHHHHHHHHHHHcc
Confidence 8999999999999999999999999999999999999999999996
No 12
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=1.7e-37 Score=209.08 Aligned_cols=111 Identities=36% Similarity=0.751 Sum_probs=108.3
Q ss_pred hHHHHHHHHHHhhcCCCCCeeeeecCCCceEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCcH---------------
Q 033703 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPK--------------- 66 (113)
Q Consensus 2 a~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~--------------- 66 (113)
|.+||++|+++|++.++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+
T Consensus 5 a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~HPNI~~~ 84 (169)
T 1ayz_A 5 ARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYAN 84 (169)
T ss_dssp HHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTT
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEecCCccccceEEEECCCCCCcCCCEEEEEEECcccCCCCCCccccccCCccCCCCCC
Confidence 67999999999999999999999999999999999999999999999999999999999999999
Q ss_pred --------------------HHHHHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhhC
Q 033703 67 --------------------VLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAM 112 (113)
Q Consensus 67 --------------------il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~~~~~~~k~a~ 112 (113)
||.+|++||.+||+++|+|.+||++|++|+++|.++||+|+++||+
T Consensus 85 G~ICl~iL~~~WsP~~~i~~vL~si~~ll~~Pn~~~P~n~~aa~~~~~d~~~y~~~~r~~~~~~a~ 150 (169)
T 1ayz_A 85 GEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKSWE 150 (169)
T ss_dssp SBBCCGGGTTTCCTTCCHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred CeEeehhhccCCCCcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCHHHHHHHHHHHHHHHcC
Confidence 8999999999999999999999999999999999999999999985
No 13
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1
Probab=100.00 E-value=1.6e-37 Score=208.10 Aligned_cols=111 Identities=35% Similarity=0.678 Sum_probs=107.6
Q ss_pred hHHHHHHHHHHhhcCCCCCeeeeecCC-----CceEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCcH----------
Q 033703 2 ASKRILKELKDLQKDPPTSCSAGPVAE-----DMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPK---------- 66 (113)
Q Consensus 2 a~~Rl~~E~~~l~~~~~~~~~~~~~~~-----~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~---------- 66 (113)
|.+||++|++++++++++|+++.+.++ |+++|+++|.||++|||+||.|+++|.||++||++||+
T Consensus 11 ~~~RL~kEl~~l~~~~p~gi~~~p~~~~d~~~nl~~W~~~I~Gp~~Tpyegg~f~l~i~fp~~YP~~pP~v~F~t~i~HP 90 (163)
T 3rcz_B 11 CKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHP 90 (163)
T ss_dssp HHHHHHHHHHHHHHSCCTTCEEEEEECTTSSEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCST
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEccCcCCCCCccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCEEEEeCCCccC
Confidence 789999999999999999999998876 89999999999999999999999999999999999999
Q ss_pred ---------------------------HHHHHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhhC
Q 033703 67 ---------------------------VLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAM 112 (113)
Q Consensus 67 ---------------------------il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~~~~~~~k~a~ 112 (113)
||.+|++||.+|++++|+|.+||++|.+|+++|.++||+|+++||.
T Consensus 91 nV~~~G~iCl~iL~~~~~W~p~~ti~~vL~~i~~ll~~P~~~~p~n~~aa~~~~~d~~~y~~~~r~~~~~ya~ 163 (163)
T 3rcz_B 91 NVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFKKDKVEYEKRVRAQARENAP 163 (163)
T ss_dssp TBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCcEeccccCCCCCcCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhCc
Confidence 8999999999999999999999999999999999999999999983
No 14
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=3.4e-37 Score=207.64 Aligned_cols=112 Identities=38% Similarity=0.716 Sum_probs=108.9
Q ss_pred hHHHHHHHHHHhhcCCCCCeeeeecCCCceEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCcH---------------
Q 033703 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPK--------------- 66 (113)
Q Consensus 2 a~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~--------------- 66 (113)
+.+||++|+++++++++.|+++.+.++|+++|+++|.||++|+|+||.|+++|.||++||++||+
T Consensus 5 ~~~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNv~~~ 84 (169)
T 1yh2_A 5 RASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSA 84 (169)
T ss_dssp HHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTT
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEEeCCCCCCCCcEEEeecCCccccCCcC
Confidence 57999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ------------------------HHHHHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhhCC
Q 033703 67 ------------------------VLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAMG 113 (113)
Q Consensus 67 ------------------------il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~~~~~~~k~a~~ 113 (113)
||.+|++||.+|++++|+|.+||++|.+|+++|.++||+|+++||++
T Consensus 85 G~iCl~iL~~~~~~~W~p~~~i~~vL~si~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~r~~~~~~a~~ 155 (169)
T 1yh2_A 85 GRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWTEKHARQ 155 (169)
T ss_dssp CBBCCGGGSCTTTSCCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSCC
T ss_pred CeEecccccCCcccCCCCCCcHHHHHHHHHHHHhCCCCcchHhHHHHHHHHhhHHHHHHHHHHHHHHHccc
Confidence 89999999999999999999999999999999999999999999963
No 15
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=100.00 E-value=3.3e-37 Score=214.41 Aligned_cols=112 Identities=44% Similarity=0.822 Sum_probs=109.2
Q ss_pred hHHHHHHHHHHhhcCCCCCeeeeecCCCceEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCcH---------------
Q 033703 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPK--------------- 66 (113)
Q Consensus 2 a~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~--------------- 66 (113)
|.+||++|+++|++++++||++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+
T Consensus 24 a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI~~~ 103 (216)
T 2pwq_A 24 ELLRLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNISSQ 103 (216)
T ss_dssp HHHHHHHHHHHHHHSCTTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTT
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCccceEEEEEEECCCcCCCCCCcccccCCCcCCCCcCC
Confidence 67999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ---------------------HHHHHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhhCC
Q 033703 67 ---------------------VLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAMG 113 (113)
Q Consensus 67 ---------------------il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~~~~~~~k~a~~ 113 (113)
||.+|++||.+||+++|+|.+||++|++|++.|.++||+|+++||++
T Consensus 104 ~G~ICL~iL~~~WsP~~ti~~VL~sI~sLL~~Pnp~dPln~eaa~~~~~d~~~f~~~ar~~t~~ya~~ 171 (216)
T 2pwq_A 104 TGAICLDVLKNEWSPALTIRTALLSIQALLSDPQPDDPQDAEVAKMYKENHALFVKTASVWTKTFATG 171 (216)
T ss_dssp TCBBCCHHHHHHCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSCC
T ss_pred CCEEEchhhcccCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Confidence 89999999999999999999999999999999999999999999974
No 16
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=3.3e-37 Score=211.31 Aligned_cols=113 Identities=42% Similarity=0.761 Sum_probs=105.9
Q ss_pred ChHHHHHHHHHHhhcCCC-------------CCeeeeecCCCceEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCcH-
Q 033703 1 MASKRILKELKDLQKDPP-------------TSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPK- 66 (113)
Q Consensus 1 ~a~~Rl~~E~~~l~~~~~-------------~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~- 66 (113)
+|.+||++|+++|+++++ .||++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+
T Consensus 32 ~a~~RL~kEl~~l~k~~~~~~~~p~~~~~~~~gi~v~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V 111 (193)
T 2f4z_A 32 REQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKM 111 (193)
T ss_dssp CHHHHHHHHHHHHHHC----------------CEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEE
T ss_pred HHHHHHHHHHHHHHhCCCccccccccccCCCCcEEEEEcCCCcceEEEEEeCCCCCCcCCCEEEEEEECCCcCCCCCCeE
Confidence 367999999999999876 799999999999999999999999999999999999999999999999
Q ss_pred -----------------------------------HHHHHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhh
Q 033703 67 -----------------------------------VLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 111 (113)
Q Consensus 67 -----------------------------------il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~~~~~~~k~a 111 (113)
||.+|++||.+|++++|+|.+||++|.+|+++|.++||+|+++||
T Consensus 112 ~F~T~i~HPNI~~~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~pnp~~P~n~~aa~l~~~d~~~f~~~ar~~t~~ya 191 (193)
T 2f4z_A 112 KFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQAMLADPVPTDPQDAEVAKMMIENHPLFVQTAKLWTETFA 191 (193)
T ss_dssp EESSCCCBTTBCTTTCBBCCGGGTTTCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred EEecCCccCCCcCCCCEEECccccccCCCCCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHc
Confidence 899999999999999999999999999999999999999999999
Q ss_pred CC
Q 033703 112 MG 113 (113)
Q Consensus 112 ~~ 113 (113)
+.
T Consensus 192 ~~ 193 (193)
T 2f4z_A 192 KE 193 (193)
T ss_dssp C-
T ss_pred cC
Confidence 73
No 17
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1
Probab=100.00 E-value=3.2e-37 Score=205.40 Aligned_cols=110 Identities=35% Similarity=0.647 Sum_probs=107.1
Q ss_pred hHHHHHHHHHHhhcCCCCCeeeeecCCCceEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCcH---------------
Q 033703 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPK--------------- 66 (113)
Q Consensus 2 a~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~--------------- 66 (113)
+.+||++|+++++++++.|+++.++++|+++|+++|.||++|+|+||.|+++|.||++||++||+
T Consensus 10 ~~~RL~kEl~~l~~~~~~~i~~~p~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~ 89 (156)
T 2e2c_A 10 VSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQS 89 (156)
T ss_dssp HHHHHHHHHHHHHHHCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTT
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEECCCCccEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCcccCCCccC
Confidence 67999999999999999999999999999999999999999999999999999999999999999
Q ss_pred --------------------HHHHHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhhC
Q 033703 67 --------------------VLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAM 112 (113)
Q Consensus 67 --------------------il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~~~~~~~k~a~ 112 (113)
||.+|++||.+||+++|+|.+||++| +|+++|.++||+|+++||.
T Consensus 90 G~iCl~iL~~~W~p~~~i~~vL~si~~ll~~pn~~~p~n~~aa~~~-~d~~~y~~~~~~~~~~~~~ 154 (156)
T 2e2c_A 90 GNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMW-SNQTEYKKVLHEKYKTAQS 154 (156)
T ss_dssp CBBCCGGGTTTCCTTCCHHHHHHHHHHHTTSCCCSSCSCHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred ceEECccccccCCCCCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHh-cCHHHHHHHHHHHHHHhcc
Confidence 89999999999999999999999999 8999999999999999985
No 18
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A
Probab=100.00 E-value=9.5e-37 Score=204.53 Aligned_cols=112 Identities=38% Similarity=0.726 Sum_probs=107.7
Q ss_pred hHHHHHHHHHHhhcCCCCCeeeeecCC-CceEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCcH--------------
Q 033703 2 ASKRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPK-------------- 66 (113)
Q Consensus 2 a~~Rl~~E~~~l~~~~~~~~~~~~~~~-~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~-------------- 66 (113)
|++||++|+++++++++.||++.+.++ |+++|+++|.||++|||+||.|+++|.||++||++||+
T Consensus 4 a~~RL~kEl~~l~~~~~~gi~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNV~~ 83 (164)
T 3h8k_A 4 ALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYP 83 (164)
T ss_dssp HHHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBCT
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEcCCCccCCCCC
Confidence 789999999999999999999998876 99999999999999999999999999999999999999
Q ss_pred ----------------------------------HHHHHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhhC
Q 033703 67 ----------------------------------VLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAM 112 (113)
Q Consensus 67 ----------------------------------il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~~~~~~~k~a~ 112 (113)
||.+|++||.+||+++|+|.+||++|++|+++|.++||+|++++++
T Consensus 84 ~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~ti~~vL~~i~~ll~~pn~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~s~~ 163 (164)
T 3h8k_A 84 DGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQKSLG 163 (164)
T ss_dssp TSBBCCGGGSCSCSCCCSCCTTCCCCCTTCCHHHHHHHHHHHHHSCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHHT
T ss_pred CCcEeeecccCcccccccccccccCCCCCCcHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhhc
Confidence 6789999999999999999999999999999999999999999986
Q ss_pred C
Q 033703 113 G 113 (113)
Q Consensus 113 ~ 113 (113)
+
T Consensus 164 ~ 164 (164)
T 3h8k_A 164 L 164 (164)
T ss_dssp C
T ss_pred C
Confidence 4
No 19
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=100.00 E-value=7.7e-37 Score=210.84 Aligned_cols=113 Identities=38% Similarity=0.718 Sum_probs=108.4
Q ss_pred ChHHHHHHHHHHhhcC---CCCCeeeeecCCCceEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCcH-----------
Q 033703 1 MASKRILKELKDLQKD---PPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPK----------- 66 (113)
Q Consensus 1 ~a~~Rl~~E~~~l~~~---~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~----------- 66 (113)
+|.+||++|+++|+++ ++.||++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+
T Consensus 5 ~a~~Rl~kEl~~l~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 84 (201)
T 3k9o_A 5 IAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPN 84 (201)
T ss_dssp TTHHHHHHHHHHHHTCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTT
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCEEEEECCCCccEEEEEEECCCCCCCCCCEEEEEEECCCcCCCCCCccccccCcccCC
Confidence 4789999999999987 36899999999999999999999999999999999999999999999999
Q ss_pred -------------------------HHHHHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhhCC
Q 033703 67 -------------------------VLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAMG 113 (113)
Q Consensus 67 -------------------------il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~~~~~~~k~a~~ 113 (113)
||.+|++||.+||+++|+|.+||++|++|++.|.++||+|+++||++
T Consensus 85 v~~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~p~p~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~~ 156 (201)
T 3k9o_A 85 ISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGA 156 (201)
T ss_dssp BCTTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHHCC
T ss_pred CcCCCCeeeCcccccCCCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhccc
Confidence 89999999999999999999999999999999999999999999974
No 20
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Probab=100.00 E-value=9.4e-37 Score=209.24 Aligned_cols=111 Identities=57% Similarity=1.093 Sum_probs=108.4
Q ss_pred hHHHHHHHHHHhhcCCCCCeeeeecCCCceEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCcH---------------
Q 033703 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPK--------------- 66 (113)
Q Consensus 2 a~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~--------------- 66 (113)
+.+||++|+++|+++++.||++.+.++|+++|+++|.||++|+|+||.|+|+|.||++||++||+
T Consensus 49 a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV~~~ 128 (194)
T 3bzh_A 49 SAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQ 128 (194)
T ss_dssp HHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTT
T ss_pred HHHHHHHHHHHHHhCCCCCceeecccCccccceEEEeCCCCCCccCCEEEEEEECCCcCCCCCccccccCCCccceECCC
Confidence 67999999999999999999999999999999999999999999999999999999999999999
Q ss_pred --------------------HHHHHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhhC
Q 033703 67 --------------------VLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAM 112 (113)
Q Consensus 67 --------------------il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~~~~~~~k~a~ 112 (113)
||.+|++||.+||+++|+|.+||++|.+|+++|.++|++|+++||+
T Consensus 129 G~ICL~iL~~~WsP~~ti~~vL~sI~~ll~~pnp~~Pln~~aa~l~~~d~~~f~~~ar~~t~~ya~ 194 (194)
T 3bzh_A 129 GVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYAT 194 (194)
T ss_dssp CBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred CceechhhhccCCCcCcHHHHHHHHHHHHhCCCCccchhHHHHHHHHHCHHHHHHHHHHHHHHhhC
Confidence 8999999999999999999999999999999999999999999996
No 21
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B
Probab=100.00 E-value=1.1e-36 Score=203.01 Aligned_cols=111 Identities=33% Similarity=0.649 Sum_probs=106.9
Q ss_pred hHHHHHHHHHHhhcCCCCCeeeeecC-----CCceEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCcH----------
Q 033703 2 ASKRILKELKDLQKDPPTSCSAGPVA-----EDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPK---------- 66 (113)
Q Consensus 2 a~~Rl~~E~~~l~~~~~~~~~~~~~~-----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~---------- 66 (113)
|.+||++|+++++++++.|+++.+.+ +|+++|+++|.||++|+|+||.|+++|.||++||++||+
T Consensus 5 a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HP 84 (157)
T 2gjd_A 5 CLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHP 84 (157)
T ss_dssp HHHHHHHHHHHHHHCCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTBEEEEEEECCTTTTTSCCEEECCTTCCCT
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEeccccCCCCcccEEEEEEECCCCCCcCCeEEEEEEEcCCCCCCCCCeeeccCCCccC
Confidence 67999999999999999999998875 489999999999999999999999999999999999999
Q ss_pred ---------------------------HHHHHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhhC
Q 033703 67 ---------------------------VLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAM 112 (113)
Q Consensus 67 ---------------------------il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~~~~~~~k~a~ 112 (113)
||.+|++||.+|++++|+|.+||++|++|+++|.++||+|+++||+
T Consensus 85 nv~~~G~iCl~iL~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a~ 157 (157)
T 2gjd_A 85 NVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKKVLLQAKQYSK 157 (157)
T ss_dssp TBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHTSCCTTCCCCHHHHHHHHHCHHHHHHHHHHHHHHTBC
T ss_pred CCCCCCcEeeecccCCCCCCCCCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence 8999999999999999999999999999999999999999999996
No 22
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Probab=100.00 E-value=1.1e-36 Score=203.68 Aligned_cols=112 Identities=34% Similarity=0.647 Sum_probs=106.8
Q ss_pred hHHHHHHHHHHhhcCCCCCeeeeecC-----CCceEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCcH----------
Q 033703 2 ASKRILKELKDLQKDPPTSCSAGPVA-----EDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPK---------- 66 (113)
Q Consensus 2 a~~Rl~~E~~~l~~~~~~~~~~~~~~-----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~---------- 66 (113)
|.+||++|+++|+++++.|+.+.+.. +|+++|+++|.||++|+|+||.|+++|.||++||++||+
T Consensus 8 a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HP 87 (161)
T 2grr_A 8 ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHP 87 (161)
T ss_dssp HHHHHHHHHHHHHHSCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCST
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCccEEEEEEECCCCCCccCCEEEEEEEcCcccCCCCCEEEEecCcccC
Confidence 57999999999999999999998763 589999999999999999999999999999999999999
Q ss_pred ---------------------------HHHHHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhhCC
Q 033703 67 ---------------------------VLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAMG 113 (113)
Q Consensus 67 ---------------------------il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~~~~~~~k~a~~ 113 (113)
||.+|++||.+|+.++|+|.+||++|.+|+++|.++||+|+++||++
T Consensus 88 nv~~~G~iCl~iL~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a~~ 161 (161)
T 2grr_A 88 NVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQSPAQAEAYTIYCQNRVEYEKRVRAQAKKFAPS 161 (161)
T ss_dssp TBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHTCC-
T ss_pred CCCCCCeEeehhcCCCCCcCCCCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHhcC
Confidence 89999999999999999999999999999999999999999999975
No 23
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=2e-36 Score=205.38 Aligned_cols=111 Identities=30% Similarity=0.548 Sum_probs=107.3
Q ss_pred hHHHHHHHHHHhhcCCCCCeeeeecCCCceEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCcH---------------
Q 033703 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPK--------------- 66 (113)
Q Consensus 2 a~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~--------------- 66 (113)
+.+||++|+++|+++++.||++.++++|+++|+++|.||++|+|+||.|+++|.||++||++||+
T Consensus 31 ~~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV~~~ 110 (179)
T 1i7k_A 31 VGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQ 110 (179)
T ss_dssp HHHHHHHHHHHHHHHCCTTEEEEEETTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCCCSTTBCTT
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEcCCcccccEEEEECCCCCCcCCCEEEEEEECCCcCCCCCceEEEecCCccCccccC
Confidence 67999999999999999999999999999999999999999999999999999999999999999
Q ss_pred --------------------HHHHHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhhCC
Q 033703 67 --------------------VLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAMG 113 (113)
Q Consensus 67 --------------------il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~~~~~~~k~a~~ 113 (113)
||.+|++||.+|++++|+|.+||++| +|+++|.++|++++++++++
T Consensus 111 G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~Pn~~~Pln~~aa~l~-~d~~~f~~~v~~~v~~~~~~ 176 (179)
T 1i7k_A 111 GNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELW-KNPTAFKKYLQETYSKQVTS 176 (179)
T ss_dssp CBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHT-TSHHHHHHHHHHHHHTTCC-
T ss_pred CeEEcccCcCcCCCCCCHHHHHHHHHHHHhCCCCcchhhHHHHHHh-hCHHHHHHHHHHHHHHHhcc
Confidence 89999999999999999999999999 99999999999999999864
No 24
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=4.5e-36 Score=201.44 Aligned_cols=111 Identities=39% Similarity=0.755 Sum_probs=106.6
Q ss_pred hHHHHHHHHHHhhcCCCCCeeeeecC-CCceEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCcH--------------
Q 033703 2 ASKRILKELKDLQKDPPTSCSAGPVA-EDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPK-------------- 66 (113)
Q Consensus 2 a~~Rl~~E~~~l~~~~~~~~~~~~~~-~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~-------------- 66 (113)
|.+||++|+++|+++++.||++.+.+ +|+++|+++|.||++|+|+||.|+++|.||++||++||+
T Consensus 5 a~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNv~~ 84 (165)
T 2ucz_A 5 AQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIYP 84 (165)
T ss_dssp HHHHHHHHHHHHHHSCCTTEEEEESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCSCTTBCT
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEECCCCCCccCcEEEEEEECCccCCCCCCEEEEeCCCccCCCCC
Confidence 68999999999999999999999876 699999999999999999999999999999999999999
Q ss_pred ----------------------------------HHHHHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhhC
Q 033703 67 ----------------------------------VLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAM 112 (113)
Q Consensus 67 ----------------------------------il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~~~~~~~k~a~ 112 (113)
||.+|++||.+||+++|+|.+||++|++|+++|.++||+|+++++.
T Consensus 85 ~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~~~~~y~~~v~~~~~~~~~ 164 (165)
T 2ucz_A 85 NGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILWRDNRPEFERQVKLSILKSLG 164 (165)
T ss_dssp TSBBCCGGGSCCCSCTTSTTTTTTSCCTTCCHHHHHHHHHHHHHSCCGGGCCCHHHHHHHHTTHHHHHHHHHHHHHHHTT
T ss_pred CCcEeehhhCCccccccccCCCCCCCCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHhh
Confidence 6789999999999999999999999999999999999999999875
No 25
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Probab=100.00 E-value=3e-36 Score=200.53 Aligned_cols=111 Identities=35% Similarity=0.708 Sum_probs=106.9
Q ss_pred ChHHHHHHHHHHhhcCCCCCeee-eecCCCceEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCcH-------------
Q 033703 1 MASKRILKELKDLQKDPPTSCSA-GPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPK------------- 66 (113)
Q Consensus 1 ~a~~Rl~~E~~~l~~~~~~~~~~-~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~------------- 66 (113)
+|.+||++|+++++++++.|+.+ .++++|+++|+++|. |++|+|+||.|+++|.||++||++||+
T Consensus 4 ~~~~RL~kEl~~l~~~~~~~i~~~~~~~~~l~~w~~~I~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV~ 82 (155)
T 1wzv_A 4 MASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVD 82 (155)
T ss_dssp -CHHHHHHHHHHHHHSCCTTEEEEEECSSCTTEEEEEEC-CCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred hHHHHHHHHHHHHHhCCCCCEEEEecCCCchheEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCCcceeeCCCccCcCC
Confidence 37899999999999999999999 788899999999999 999999999999999999999999999
Q ss_pred -----------------------HHHHHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhhC
Q 033703 67 -----------------------VLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAM 112 (113)
Q Consensus 67 -----------------------il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~~~~~~~k~a~ 112 (113)
||.+|++||.+|++++|+|.+||++|++|+++|.++||+|+++||+
T Consensus 83 ~~G~iCl~iL~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~r~~~~~~a~ 151 (155)
T 1wzv_A 83 ENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFTLRFGV 151 (155)
T ss_dssp TTCBCCCGGGCTTTCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCE
T ss_pred CCCeEeecCCCccCCCCCCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 7899999999999999999999999999999999999999999996
No 26
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=100.00 E-value=9.1e-36 Score=211.21 Aligned_cols=112 Identities=38% Similarity=0.717 Sum_probs=108.0
Q ss_pred hHHHHHHHHHHhhcC---CCCCeeeeecCCCceEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCcH------------
Q 033703 2 ASKRILKELKDLQKD---PPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPK------------ 66 (113)
Q Consensus 2 a~~Rl~~E~~~l~~~---~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~------------ 66 (113)
|.+||++|+++|+++ ++.||++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+
T Consensus 58 a~~RL~kEl~~l~~~~~~~~~gi~v~p~~dnl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV 137 (253)
T 3e46_A 58 AVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNI 137 (253)
T ss_dssp HHHHHHHHHHHHHHCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred HHHHHHHHHHHHHhCCCCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeecCCCccCCc
Confidence 679999999999987 47899999999999999999999999999999999999999999999999
Q ss_pred ------------------------HHHHHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhhCC
Q 033703 67 ------------------------VLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAMG 113 (113)
Q Consensus 67 ------------------------il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~~~~~~~k~a~~ 113 (113)
||.+|++||.+||+++|+|.+||++|.+|++.|.++|++|+++||++
T Consensus 138 ~~~~G~ICL~iL~~~WsP~~ti~~vL~sI~~ll~~pnp~~Pln~eaa~l~~~d~~~f~~~ar~~t~~yA~~ 208 (253)
T 3e46_A 138 SSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGA 208 (253)
T ss_dssp CTTTCBBCCGGGTTCCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHHCC
T ss_pred cCCCCeeecccccCCCCCCCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHCHHHHHHHHHHHHHHhccc
Confidence 89999999999999999999999999999999999999999999974
No 27
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=100.00 E-value=4.7e-36 Score=208.45 Aligned_cols=113 Identities=42% Similarity=0.815 Sum_probs=107.8
Q ss_pred ChHHHHHHHHHHhhcCCCCCeeeeecCC-CceEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCcH-------------
Q 033703 1 MASKRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPK------------- 66 (113)
Q Consensus 1 ~a~~Rl~~E~~~l~~~~~~~~~~~~~~~-~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~------------- 66 (113)
+|.+||++|++++++++++||++.+.++ ++++|+++|.||++|||+||.|+++|.||++||++||+
T Consensus 2 ~a~~RL~kEl~~l~~~~~~gi~~~p~~~~~l~~w~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI~ 81 (215)
T 1tte_A 2 SRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNIS 81 (215)
T ss_dssp TTHHHHHHHHHHHHTTTCTTCEECCCSSSSCCEEEEECCEEEEETTEEECCEEEEECCSCSSSCCCEEEETTTCCCSSSC
T ss_pred hHHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCCEEEEEEeCCccCCCCCCcccccCCCccCcCc
Confidence 4789999999999999999999998876 46699999999999999999999999999999999999
Q ss_pred -----------------------HHHHHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhhCC
Q 033703 67 -----------------------VLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAMG 113 (113)
Q Consensus 67 -----------------------il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~~~~~~~k~a~~ 113 (113)
||.+|++||.+||+++|+|.+||++|.+|++.|.++||+|+++||++
T Consensus 82 ~~~G~ICL~iL~~~WsP~~ti~~VL~sI~sLL~~Pnp~~Pln~eaa~~~~~d~~~f~~~ar~~t~~yA~~ 151 (215)
T 1tte_A 82 SVTGAICLDILRNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYASE 151 (215)
T ss_dssp SSSSCCCSSTTTCCSCTTCCHHHHHHHHHHHHTSCCCSSCSCHHHHHHHHHCHHHHHHHHHHHHHHSSCC
T ss_pred CCCCEEECccCCCCCCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhccC
Confidence 89999999999999999999999999999999999999999999964
No 28
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}
Probab=100.00 E-value=1e-35 Score=197.35 Aligned_cols=109 Identities=28% Similarity=0.519 Sum_probs=102.9
Q ss_pred hHHHHHHHHHHhhcCCCCCeeeeecCCCceEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCcH---------------
Q 033703 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPK--------------- 66 (113)
Q Consensus 2 a~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~--------------- 66 (113)
|.+||++|++++++. |+++.+.++|+++|+++|.||++|+|+||.|+++|.||++||++||+
T Consensus 3 a~~Rl~kEl~~l~~~---~~~v~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~~ 79 (152)
T 2onu_A 3 SLTRKQCDFTKLIMA---GYDLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEA 79 (152)
T ss_dssp CCCHHHHTHHHHHHH---TCCEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTT
T ss_pred HHHHHHHHHHhcCcC---CCEEEEccCccceEEEEEECCCCCcccceEEEEEEcCcccCCCCCCeEEEecCCccCcCcCc
Confidence 678999999999874 78888889999999999999999999999999999999999999999
Q ss_pred ---------------------HHHH-HHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhhCC
Q 033703 67 ---------------------VLLS-ICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAMG 113 (113)
Q Consensus 67 ---------------------il~~-i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~~~~~~~k~a~~ 113 (113)
||.+ |++||.+||+++|+|.+||++|.+|+++|.++||+|+++||++
T Consensus 80 ~G~iCl~il~~~W~p~~~i~~vl~~ii~~Ll~~Pn~~~P~n~~aa~~~~~d~~~y~~~v~~~~~~~a~~ 148 (152)
T 2onu_A 80 SGSVCLDVINQTWTPLYSLVNVFEVFLPQLLTYPNPSDPLNSDAASLLMKDKNIYEEKVKEYVKLYASK 148 (152)
T ss_dssp TCBBCHHHHHHHCCTTCCHHHHHHTHHHHHHHSCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHSCG
T ss_pred CCeEecccccccCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhccC
Confidence 6777 6899999999999999999999999999999999999999963
No 29
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A
Probab=100.00 E-value=4.8e-35 Score=196.78 Aligned_cols=110 Identities=31% Similarity=0.541 Sum_probs=104.5
Q ss_pred hHHHHHHHHHHhhcCCCCCeeeeec-CCCceEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCcH--------------
Q 033703 2 ASKRILKELKDLQKDPPTSCSAGPV-AEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPK-------------- 66 (113)
Q Consensus 2 a~~Rl~~E~~~l~~~~~~~~~~~~~-~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~-------------- 66 (113)
+.+||++|+++|+++++.|+++.+. ++|++.|.++| ||++|||+||.|+++|.||++||++||+
T Consensus 15 ~~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~ 93 (167)
T 3fn1_B 15 RDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTV-TPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITE 93 (167)
T ss_dssp HHHHHHHHHHHHGGGSCTTEEEECSSSSCTTEEEEEE-CCSSSTTTTCCEEEEEECCTTBTTBCCEEEECSCCCCSSBCT
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEeCCCCcceeEEEEE-CCCCCccCCCEEEEEEECCCCCCCCCCeeEecCCcccCCCCC
Confidence 5799999999999999999999854 57899999999 8999999999999999999999999999
Q ss_pred ---------------------------HHHHHHHhhcC-CCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhhC
Q 033703 67 ---------------------------VLLSICSLLTD-PNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAM 112 (113)
Q Consensus 67 ---------------------------il~~i~~ll~~-p~~~~p~n~~a~~~~~~d~~~f~~~~~~~~~k~a~ 112 (113)
||.+|++||.+ ||+++|+|.+||++|++|+++|.++||+|+++||+
T Consensus 94 ~G~iCl~iL~~~~~~~~~W~p~~~i~~vl~~i~~ll~~~pn~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~A~ 167 (167)
T 3fn1_B 94 TGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYIKRYAR 167 (167)
T ss_dssp TCCBCCGGGSBCSSSTTSBCTTCCHHHHHHHHHHTTTTTCCSSSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred CCEEechhhccCCCCCCCCCCcCcHHHHHHHHHHHHcCCCCCCcchhHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence 78899999999 79999999999999999999999999999999996
No 30
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=100.00 E-value=5.2e-35 Score=218.96 Aligned_cols=113 Identities=79% Similarity=1.405 Sum_probs=110.0
Q ss_pred ChHHHHHHHHHHhhcCCCCCeeeeecCCCceEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCcH--------------
Q 033703 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPK-------------- 66 (113)
Q Consensus 1 ~a~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~-------------- 66 (113)
+|.+||++|++++++++++|+++.|.++|+++|+++|.||++|||+||.|+++|.||++||++||+
T Consensus 3 ~a~~RL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~ 82 (399)
T 4ddg_A 3 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS 82 (399)
T ss_dssp HHHHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSSSTTCEEEEEEECCSSTTTSCCEEEESSCCCCTTBCT
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEcCCcceEEEEEEECCCCCCCCCCEEEEEEECCcccCCCCcEEEeeccccccccCC
Confidence 478999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ---------------------HHHHHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhhCC
Q 033703 67 ---------------------VLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAMG 113 (113)
Q Consensus 67 ---------------------il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~~~~~~~k~a~~ 113 (113)
||.+|++||.+||+++|+|.+||++|++|++.|.++||+|+++||++
T Consensus 83 ~G~iCl~il~~~W~p~~~i~~vL~~i~~ll~~pnp~~p~n~~aa~~~~~d~~~y~~~~~~~~~~~a~~ 150 (399)
T 4ddg_A 83 NGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAMG 150 (399)
T ss_dssp TCBBCCGGGTTSCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHTSC
T ss_pred CCeEeCcccccCCCccccHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHCHHHHHHHHHHHHHHhhcc
Confidence 89999999999999999999999999999999999999999999974
No 31
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=9.5e-35 Score=195.59 Aligned_cols=107 Identities=30% Similarity=0.572 Sum_probs=102.5
Q ss_pred hHHHHHHHHHHhhcCCCCCeeeeecCCCceEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCcH---------------
Q 033703 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPK--------------- 66 (113)
Q Consensus 2 a~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~--------------- 66 (113)
|.+||++|+++|+++++.|+++.+.++|+++|+++|.||++|+|+||.|+++|.||++||++||+
T Consensus 24 a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNI~~~ 103 (169)
T 1yrv_A 24 AYLLLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDPH 103 (169)
T ss_dssp HHHHHHHHHHHHHHHCCTTEEEEECSTTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSCCCCTTBCTT
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEcCCccccceeEEECCCCCCccceEEEEEEECCccCCCCCCcceecCCCccCcccCC
Confidence 67999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -----------------------HHHHHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHH
Q 033703 67 -----------------------VLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQK 109 (113)
Q Consensus 67 -----------------------il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~~~~~~~k 109 (113)
||.+|++||.+||+++|+|.+||++|++|+++|.++ ++++++
T Consensus 104 ~G~ICL~iL~~~~~WsP~~ti~~vL~sI~sll~~Pn~~~Pln~eaa~l~~~d~~~y~~~-~~~v~~ 168 (169)
T 1yrv_A 104 TGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDESLYRTI-LRLFNR 168 (169)
T ss_dssp TCCBCCHHHHCGGGCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHHHHHSCHHHHHHH-HHHHC-
T ss_pred CCeEeehhhcCCcCCCCcCCHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHH-HHHhhC
Confidence 788999999999999999999999999999999999 888764
No 32
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.5e-34 Score=196.07 Aligned_cols=107 Identities=31% Similarity=0.609 Sum_probs=101.3
Q ss_pred hHHHHHHHHHHhhcCCCCCeeeeecCCCceEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCcH---------------
Q 033703 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPK--------------- 66 (113)
Q Consensus 2 a~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~--------------- 66 (113)
|.+||++|++++++ .|+++.+. +|+++|+++|.||++|||+||.|+++|.||++||++||+
T Consensus 26 a~~RL~kEl~~l~~---~g~~v~~~-ddl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~V~F~t~i~HPNV~~~ 101 (179)
T 2z5d_A 26 GKRRMDTDVIKLIE---SKHEVTIL-GGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEA 101 (179)
T ss_dssp HHHHHHHHHHHHHH---SSSCEEEE-EETTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTT
T ss_pred HHHHHHHHHHhcCc---CCCEEEEC-CCCceeEEEEECCCCCCccCCEEEEEeeCCCCCCCCCceEEEecCCccCcCCCC
Confidence 57999999999985 47888877 678999999999999999999999999999999999999
Q ss_pred ---------------------HHHH-HHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhhC
Q 033703 67 ---------------------VLLS-ICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAM 112 (113)
Q Consensus 67 ---------------------il~~-i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~~~~~~~k~a~ 112 (113)
||.+ |++||.+||+++|+|.+||++|++|+++|.++||+|+++||+
T Consensus 102 ~G~ICL~iL~~~WsP~~ti~~iL~s~I~~Ll~~Pn~~~p~n~eaa~~~~~d~~~y~~~vr~~~~~~a~ 169 (179)
T 2z5d_A 102 SGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYAT 169 (179)
T ss_dssp TCBBCHHHHHHHCCTTCCTTHHHHTHHHHHHHSCCCSSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSS
T ss_pred CCeEeccccccCCCCCCCHHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHcc
Confidence 8888 999999999999999999999999999999999999999996
No 33
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Probab=100.00 E-value=2.6e-34 Score=195.70 Aligned_cols=110 Identities=34% Similarity=0.667 Sum_probs=105.1
Q ss_pred hHHHHHHHHHHhhcCCCCCeeee-ecCCCceEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCcH--------------
Q 033703 2 ASKRILKELKDLQKDPPTSCSAG-PVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPK-------------- 66 (113)
Q Consensus 2 a~~Rl~~E~~~l~~~~~~~~~~~-~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~-------------- 66 (113)
|.+||++|+++|+++++.||++. ++++|+++|+++|.||++|+|+||.|+++|.||++||++||+
T Consensus 8 a~kRL~kEl~~l~~~~~~gi~~~~~~~~nl~~W~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV~~ 87 (183)
T 3rz3_A 8 SQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYE 87 (183)
T ss_dssp HHHHHHHHHHHHHHSCCTTEEEEECTTCCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCCTTBCT
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEecCccchhheeeeeeCCCCCCCCCCeEEEEEECCCCCCCCCCeeEecCCCccCCCCC
Confidence 67999999999999999999998 667899999999999999999999999999999999999999
Q ss_pred ----------------------------------HHHHHHHhhcCCCCCCCccHHHHHHHHH------CHHHHHHHHHHH
Q 033703 67 ----------------------------------VLLSICSLLTDPNPDDPLVPEIAHMYKS------DKAKYESTARSW 106 (113)
Q Consensus 67 ----------------------------------il~~i~~ll~~p~~~~p~n~~a~~~~~~------d~~~f~~~~~~~ 106 (113)
||.+|++||.+||+++|+|.+||++|++ |+++|.++|+++
T Consensus 88 ~G~iClsiL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~~~~~~~~~~~y~~~v~~~ 167 (183)
T 3rz3_A 88 TGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWKESKGKDREYTDIIRKQ 167 (183)
T ss_dssp TSBBCCTTC--------------CCCCTTCCHHHHHHHHHHHHHSCCCSSCSSHHHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred CCcEehhhcCcccccccccccccCCCCCcCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcccccccHHHHHHHHHHH
Confidence 6889999999999999999999999999 789999999999
Q ss_pred HHHhh
Q 033703 107 TQKYA 111 (113)
Q Consensus 107 ~~k~a 111 (113)
++++.
T Consensus 168 v~~s~ 172 (183)
T 3rz3_A 168 VLGTK 172 (183)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99885
No 34
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C
Probab=100.00 E-value=1.9e-35 Score=196.41 Aligned_cols=112 Identities=37% Similarity=0.756 Sum_probs=102.5
Q ss_pred ChHHHHHHHHHHhhcCCCCCeeeee-cCCCceEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCcH-------------
Q 033703 1 MASKRILKELKDLQKDPPTSCSAGP-VAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPK------------- 66 (113)
Q Consensus 1 ~a~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~------------- 66 (113)
+|.+||++|+++++++++.|+.+.+ +++|+++|+++|. |++|+|+||.|+++|.||++||++||+
T Consensus 2 ~a~~RL~kEl~~l~~~~~~~~~~~~~~~~~l~~w~~~i~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~ 80 (154)
T 1c4z_D 2 AASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNID 80 (154)
T ss_dssp --CTTHHHHHTTCSSSCCSSCEEECSSCSSSSEEEEEEC-CCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCCCCTTBC
T ss_pred cHHHHHHHHHHHHHhCCCCCEEEeeCCCCchheEEEEEe-CCCCCccCCeEEEEEEeCCCCCCCCCEEEEeCCCccccCC
Confidence 3679999999999999999998544 5689999999998 999999999999999999999999999
Q ss_pred -----------------------HHHHHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhhCC
Q 033703 67 -----------------------VLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAMG 113 (113)
Q Consensus 67 -----------------------il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~~~~~~~k~a~~ 113 (113)
||.+|++||.+|++++|+|.+||++|++|+++|.++||+|+++||++
T Consensus 81 ~~G~iCl~iL~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a~~ 150 (154)
T 1c4z_D 81 EKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYGEK 150 (154)
T ss_dssp TTCBBCCTTTSSSSCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHTCSSTTHHHHHHHHTTC---
T ss_pred CCCEEECCCCCCCCCCCCCcHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHhHHHHHHHHHHHHHHhccc
Confidence 89999999999999999999999999999999999999999999963
No 35
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A
Probab=100.00 E-value=8e-34 Score=191.63 Aligned_cols=111 Identities=32% Similarity=0.590 Sum_probs=102.5
Q ss_pred hHHHHHHHHHHhhc-C-C------CC---Ceeeee-cCCCceEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCcH---
Q 033703 2 ASKRILKELKDLQK-D-P------PT---SCSAGP-VAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPK--- 66 (113)
Q Consensus 2 a~~Rl~~E~~~l~~-~-~------~~---~~~~~~-~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~--- 66 (113)
|.+||++|+++|++ . + +. ++.+.+ +++|+++|+++|.||++|||+||.|+++|.||++||++||+
T Consensus 7 ~~~RL~kEl~~l~~~~~~~~~~~~p~~g~~~~~~p~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f 86 (172)
T 2y9m_A 7 CMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISF 86 (172)
T ss_dssp HHHHHHHHHHHHHHHHTCCCTTTCTTTTTEEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEE
T ss_pred HHHHHHHHHHHHHhccCCcccccCCCCcceEEEecCCCCchhEEEEEEECCCCCcccCCEEEEEEECCCcCCCCCCEEEE
Confidence 57999999999998 4 3 33 466777 77899999999999999999999999999999999999998
Q ss_pred -----------------------------------HHHHHHHhhcCCCCCCCccHHHHHHHHH-CHHHHHHHHHHHHHHh
Q 033703 67 -----------------------------------VLLSICSLLTDPNPDDPLVPEIAHMYKS-DKAKYESTARSWTQKY 110 (113)
Q Consensus 67 -----------------------------------il~~i~~ll~~p~~~~p~n~~a~~~~~~-d~~~f~~~~~~~~~k~ 110 (113)
||.+|++||.+|++++|+|.+||++|++ |+++|.++||+|++++
T Consensus 87 ~t~~i~HPni~~~~G~iCl~iL~~~~W~p~~~i~~vL~si~~ll~~p~~~~p~n~~aa~~~~~~d~~~f~~~~~~~~~~~ 166 (172)
T 2y9m_A 87 MQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGNIIRCGDMSAYQGIVKYFLAER 166 (172)
T ss_dssp CTTSCCCTTEETTTTEECCGGGSTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred eeCCeecCCCcCCCCEEeccccCCCCCCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999 9999999999999998
Q ss_pred hC
Q 033703 111 AM 112 (113)
Q Consensus 111 a~ 112 (113)
+.
T Consensus 167 ~~ 168 (172)
T 2y9m_A 167 ER 168 (172)
T ss_dssp HC
T ss_pred Hh
Confidence 63
No 36
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A
Probab=100.00 E-value=4.1e-34 Score=193.04 Aligned_cols=106 Identities=35% Similarity=0.770 Sum_probs=73.8
Q ss_pred ChHHHHHHHHHHhhcCCCCCeeeeecC-CCceEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCcH-------------
Q 033703 1 MASKRILKELKDLQKDPPTSCSAGPVA-EDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPK------------- 66 (113)
Q Consensus 1 ~a~~Rl~~E~~~l~~~~~~~~~~~~~~-~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~------------- 66 (113)
.|.+||++|+++|+++++.||++.+.+ +|+++|+++|.||++|+|+||.|+++|.||++||++||+
T Consensus 17 ~~~~rL~kEl~~l~~~~~~gi~~~p~~~~nl~~W~~~I~GP~~TpYegG~f~~~i~fp~~YP~~PP~v~F~T~i~HPNV~ 96 (172)
T 2awf_A 17 RGSLLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVD 96 (172)
T ss_dssp TTHHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBC
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCcEEEEEEECCcccCCCCCcccccCCCccCCCC
Confidence 368999999999999999999999876 799999999999999999999999999999999999999
Q ss_pred -----------------------------------HHHHHHHhhcCCCCCCCccHHHHHHHHHCHH-HHHHHHHHH
Q 033703 67 -----------------------------------VLLSICSLLTDPNPDDPLVPEIAHMYKSDKA-KYESTARSW 106 (113)
Q Consensus 67 -----------------------------------il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~-~f~~~~~~~ 106 (113)
||.+|++||.+||+++|+|.+||++|++|++ +|.++||+|
T Consensus 97 ~~G~IClsiL~~~~~d~~~~~~~~~~WsP~~ti~~vL~sI~sll~~Pn~~~p~n~~aa~~~~~d~~~~f~~~vr~~ 172 (172)
T 2awf_A 97 KNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRNGEFKRKVARC 172 (172)
T ss_dssp TTCBBCCGGGSCC---------CTTSCCTTCCHHHHHHHHHHHHSCC-----------------------------
T ss_pred CCCcEehhhcCCcccccccccccCCCCCCcCcHHHHHHHHHHHHHCcCCCCccCHHHHHHHHHCcHHHHHHHHHhC
Confidence 5778999999999999999999999999999 999999975
No 37
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Probab=100.00 E-value=3e-33 Score=188.57 Aligned_cols=107 Identities=25% Similarity=0.528 Sum_probs=99.7
Q ss_pred hHHHHHHHHHHhhcCCCCCeeeeecCCCceEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCcH---------------
Q 033703 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPK--------------- 66 (113)
Q Consensus 2 a~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~--------------- 66 (113)
+.+||++|++++++++. ++ +.++|+++|+++|.||++|+|+||.|+++|.||++||++||+
T Consensus 13 ~~~RL~~El~~l~~~~~-~v---~~~~~l~~w~~~I~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPNi~~~ 88 (171)
T 1yf9_A 13 SNRRREMDYMRLCNSTR-KV---YPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDER 88 (171)
T ss_dssp CCHHHHHHHHHHHSSSS-CE---EECSSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTT
T ss_pred HHHHHHHHHHHHHhCCC-CC---CCCCCceEEEEEEECCCCCCccCceEEEEEEcCCCCCCCCCeEEeecCcccccCccc
Confidence 46999999999999874 43 357899999999999999999999999999999999999999
Q ss_pred ---------------------HHHHH-HHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhhC
Q 033703 67 ---------------------VLLSI-CSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAM 112 (113)
Q Consensus 67 ---------------------il~~i-~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~~~~~~~k~a~ 112 (113)
||.+| ++||.+|+.++|+|.+||.+|.+|++.|.++||+|+++||+
T Consensus 89 ~G~iCl~iL~~~W~p~~~i~~vL~sil~~ll~~Pn~~~p~n~~aa~~~~~d~~~y~~~vr~~~~~~a~ 156 (171)
T 1yf9_A 89 SGSVCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLLHADRVGFDALLREHVSTHAT 156 (171)
T ss_dssp TCBBCHHHHHHHCCTTCCTHHHHHTHHHHHHHSCCSSCCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred CCeEeccccccCCCCCCcHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHcC
Confidence 78886 79999999999999999999999999999999999999986
No 38
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=2.7e-33 Score=187.12 Aligned_cols=105 Identities=27% Similarity=0.612 Sum_probs=99.8
Q ss_pred hHHHHHHHHHHhhcCCCCCeeee-ecCCCceEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCcH--------------
Q 033703 2 ASKRILKELKDLQKDPPTSCSAG-PVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPK-------------- 66 (113)
Q Consensus 2 a~~Rl~~E~~~l~~~~~~~~~~~-~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~-------------- 66 (113)
|.+||++|++++ ++++|+++. ++++|+++|+++| ||++|+|+||.|+++|.||++||++||+
T Consensus 7 ~~~RL~kEl~~l--~~~~~~~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~ 83 (160)
T 1y8x_A 7 AQLRIQKDINEL--NLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDL 83 (160)
T ss_dssp HHHHHHHHHHTC--CCCTTEEEECSSTTCTTEEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCCCBTTBCT
T ss_pred HHHHHHHHHHhc--CCCCCeEEEeccCCccceEEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCEEEEecCCccCcCCC
Confidence 679999999999 467899987 7889999999998 9999999999999999999999999999
Q ss_pred ---------------------HHHHHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHH
Q 033703 67 ---------------------VLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQK 109 (113)
Q Consensus 67 ---------------------il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~~~~~~~k 109 (113)
||.+|++||.+|++++|+|.+||.+|++|+++|.++|++|++.
T Consensus 84 ~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~Pn~~~p~n~~aa~~~~~~~~~f~~~v~~~v~~ 147 (160)
T 1y8x_A 84 EGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRG 147 (160)
T ss_dssp TCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHSCHHHHHHHHHHHHHS
T ss_pred CCeEEcccchhhccCCCCHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHhh
Confidence 8999999999999999999999999999999999999999874
No 39
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=6.7e-33 Score=188.22 Aligned_cols=105 Identities=27% Similarity=0.612 Sum_probs=100.0
Q ss_pred hHHHHHHHHHHhhcCCCCCeeee-ecCCCceEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCcH--------------
Q 033703 2 ASKRILKELKDLQKDPPTSCSAG-PVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPK-------------- 66 (113)
Q Consensus 2 a~~Rl~~E~~~l~~~~~~~~~~~-~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~-------------- 66 (113)
+.+||++|++++ ++++|+++. ++++|+++|+++| ||++|||+||.|+++|.||++||++||+
T Consensus 27 ~~~RL~kEl~~l--~~~~~i~~~~p~~~nl~~W~~~i-gP~~tpYegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPNV~~ 103 (180)
T 2nvu_C 27 AQLRIQKDINEL--NLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDL 103 (180)
T ss_dssp HHHHHHHHHHTC--CCCTTEEEECSSTTCTTEEEEEE-CCCSGGGTTBCEEEEEECCTTTTTSCCEEEECSCCCBTTBCT
T ss_pred HHHHHHHHHHhc--CCCCCeEEEecccccccceEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCcCceeccCccCCCCC
Confidence 679999999999 567899987 7889999999998 9999999999999999999999999999
Q ss_pred ---------------------HHHHHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHH
Q 033703 67 ---------------------VLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQK 109 (113)
Q Consensus 67 ---------------------il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~~~~~~~k 109 (113)
||.+|++||.+||+++|+|.+||.+|.+|+++|.++|++|++.
T Consensus 104 ~G~iCl~iL~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~d~~~f~~~v~~~v~~ 167 (180)
T 2nvu_C 104 EGNVALNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRG 167 (180)
T ss_dssp TSBBCCGGGTTSCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHS
T ss_pred CCcEEcccccccCCCCCCHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHhh
Confidence 8999999999999999999999999999999999999999885
No 40
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C
Probab=99.98 E-value=3.2e-32 Score=186.29 Aligned_cols=106 Identities=24% Similarity=0.463 Sum_probs=100.4
Q ss_pred hHHHHHHHHHHhhcCCCCCeeee----ecCCCce---EEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCcH--------
Q 033703 2 ASKRILKELKDLQKDPPTSCSAG----PVAEDMF---HWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPK-------- 66 (113)
Q Consensus 2 a~~Rl~~E~~~l~~~~~~~~~~~----~~~~~~~---~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~-------- 66 (113)
|.+||++|+++++ +++|+++. ++++|++ +|+++|. |++|||+||.|+++|.||++||++||+
T Consensus 30 a~~RL~kEl~~l~--~~~~i~~~~~~~p~~~nl~~~~~w~~~I~-p~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~ 106 (190)
T 3o2u_A 30 ARIRLKRDLDSLD--LPPTVTLNVITSPDSADRSQSPKLEVIVR-PDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKIF 106 (190)
T ss_dssp HHHHHHHHHHTCC--CCTTEEEEEEECTTCCCTTSCCEEEEEEC-CSSSTTTTCCEEEEEECCTTTTTSCCEEEECSCCC
T ss_pred HHHHHHHHHHhcc--CCCCEEEEecCCCCCccCCcCCeEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCceeEEecCcc
Confidence 6799999999998 67899987 7889999 9999997 888999999999999999999999999
Q ss_pred ---------------------------HHHHHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHh
Q 033703 67 ---------------------------VLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKY 110 (113)
Q Consensus 67 ---------------------------il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~~~~~~~k~ 110 (113)
||.+|++||.+||+++|+|.+||++|.+|+++|.++||+|++.+
T Consensus 107 HPnV~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~pn~~~pln~~aa~~~~~d~~~f~~~ar~~~~~~ 177 (190)
T 3o2u_A 107 HPNIDLKGNVCLNILREDWSPALDLQSIITGLLFLFLEPNPNDPLNKDAAKLLCEGEKEFAEAVRLTMSGG 177 (190)
T ss_dssp CTTBCTTSBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHTCHHHHHHHHHHHHBTC
T ss_pred cCCCCCCCeEechhccCCCCCCCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHHCHHHHHHHHHHHHHhc
Confidence 89999999999999999999999999999999999999999754
No 41
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}
Probab=99.97 E-value=4.7e-31 Score=177.29 Aligned_cols=104 Identities=25% Similarity=0.547 Sum_probs=96.3
Q ss_pred hHHHHHHHHHHhhcCC------------CCCeeeeecCCCceEEEEEEeCCCCCCCC--CcEEEEEEEcCCCCCCCCcH-
Q 033703 2 ASKRILKELKDLQKDP------------PTSCSAGPVAEDMFHWQATIMGPSDSPYA--GGVFLVTIHFPPDYPFKPPK- 66 (113)
Q Consensus 2 a~~Rl~~E~~~l~~~~------------~~~~~~~~~~~~~~~w~~~i~gp~~t~y~--gg~f~~~i~~p~~YP~~pP~- 66 (113)
|.+||++|++++++++ +.++.+.++++|+++|+++|.||++|+|+ ||.|+++|.||++||++||+
T Consensus 9 a~kRL~kEl~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpye~~gg~f~~~i~fp~~YP~~pP~v 88 (167)
T 4ds2_A 9 SNKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPPTV 88 (167)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTC----CCSSCEEEEEEESSTTEEEEEEECCTTSGGGTTCCEEEEEEECCTTTTTSCCEE
T ss_pred HHHHHHHHHHHHHhCcccccccccccCCCCcEEEEeCCCcccEEEEEEECCCCCCccCCCCEEEEEEECCCCCCCCCCEE
Confidence 6799999999999876 77899999999999999999999999999 99999999999999999999
Q ss_pred -----------------------------------HHHHHHHhhcC--CCCCCCccHHHHHHHHHCHHHHHHHHHH
Q 033703 67 -----------------------------------VLLSICSLLTD--PNPDDPLVPEIAHMYKSDKAKYESTARS 105 (113)
Q Consensus 67 -----------------------------------il~~i~~ll~~--p~~~~p~n~~a~~~~~~d~~~f~~~~~~ 105 (113)
|+..|++|+.+ ||+++|+|.+||++|++|+++|.++||+
T Consensus 89 ~f~t~i~HPnv~~~G~iCl~il~~~W~p~~~i~~vll~~l~~l~~~~~pn~~~p~n~eaa~l~~~d~~~f~~~vrr 164 (167)
T 4ds2_A 89 RFVTPVYSPLVTGEGGICDRMVNDFWTPDQHASDVIKLVLDRVFSQYKSRRDDDVNPEARHYLEKFPQDFAARVRR 164 (167)
T ss_dssp EESSCCCCSSCCTTSCCCTHHHHTTCCTTSCHHHHHHHHHHHHHTSTTSCCSCCCCHHHHHHHHHCHHHHHHHHTT
T ss_pred EEeCCcccccCCCCCEEEcccCcCCCCCCCChHHHHHHHHHHHHhcCCCCCcchHhHHHHHHHHHCHHHHHHHHhh
Confidence 34567788875 8999999999999999999999999983
No 42
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C
Probab=99.96 E-value=2e-29 Score=167.62 Aligned_cols=94 Identities=24% Similarity=0.448 Sum_probs=85.6
Q ss_pred hHHHHHHHHHHhhcC-CCCCeeeeecC-C--CceEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCcH-----------
Q 033703 2 ASKRILKELKDLQKD-PPTSCSAGPVA-E--DMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPK----------- 66 (113)
Q Consensus 2 a~~Rl~~E~~~l~~~-~~~~~~~~~~~-~--~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~----------- 66 (113)
+.+||++|+++++++ ++.|+++.+.+ + |+++|+++|.||++|+|+||.|+++|.||++||++||+
T Consensus 22 ~~~RL~kEl~~l~~~~~~~~i~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~HPN 101 (156)
T 2q0v_A 22 RSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEMSC 101 (156)
T ss_dssp HHHHHHHHHHHHHCC-CCTTEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCTT
T ss_pred HHHHHHHHHHHHHhCCCCCCeEEEECCCccccceeeEEEEECCCCCCcCCcEEEEEEECCCcCCCCCCeEEEEcccccCC
Confidence 679999999999998 78899998754 3 59999999999999999999999999999999999999
Q ss_pred --------------------------HHHHHHHhhcCCCCCCCccHHHHHHHHHC
Q 033703 67 --------------------------VLLSICSLLTDPNPDDPLVPEIAHMYKSD 95 (113)
Q Consensus 67 --------------------------il~~i~~ll~~p~~~~p~n~~a~~~~~~d 95 (113)
||.+|++||.+|++++|+|++||.+|.+|
T Consensus 102 V~~~G~icisCL~iL~~WsP~~ti~~vL~sI~~ll~~Pn~~~p~n~~aa~~y~~n 156 (156)
T 2q0v_A 102 VDNCGRVIKNNLHILKNWNRNYTIETILISLRQEMLSSANKRLPQPNEGEVYSNN 156 (156)
T ss_dssp BCTTSBBCGGGSHHHHTCCTTCCHHHHHHHHHHHTTSTTTTTCCCCCTTCBC---
T ss_pred CccCCeEehhhcccccCCCCcCcHHHHHHHHHHHHhCCCCCCcCChHHHHHhhhC
Confidence 78899999999999999999999999875
No 43
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Probab=99.96 E-value=8.7e-29 Score=180.09 Aligned_cols=111 Identities=32% Similarity=0.493 Sum_probs=101.4
Q ss_pred hHHHHHHHHHHhhcCCCCC----eeeeecCCCceEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCcH-----------
Q 033703 2 ASKRILKELKDLQKDPPTS----CSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPK----------- 66 (113)
Q Consensus 2 a~~Rl~~E~~~l~~~~~~~----~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~----------- 66 (113)
+.+||++|++.|++++++| +.+.++++|++.|+++|.||++|||+||.|+|+|.||++||++||+
T Consensus 77 ~~kRL~kEl~~L~k~~p~g~~~~i~v~~~ednl~~w~~~I~GP~~TpYegG~F~l~I~fP~dYP~~PP~V~F~T~~g~~~ 156 (323)
T 3ceg_A 77 RARRLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSV 156 (323)
T ss_dssp HHHHHHHHHHHHHHHCCCCSSCCEEEEEESSCTTEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEECCSTTTTC
T ss_pred HHHHHHHHHHHHHhCCCCCcccceeecccCCCccccEEEEeCCCCCCcCCCEEEEEEeCCCCCCCCCCeEEEeccCCCcc
Confidence 5799999999999987765 4566788999999999999999999999999999999999999998
Q ss_pred -------------------------------------HHHHHHHhhc--CCCCCCCccHHH--HHHHHHCHHHHHHHHHH
Q 033703 67 -------------------------------------VLLSICSLLT--DPNPDDPLVPEI--AHMYKSDKAKYESTARS 105 (113)
Q Consensus 67 -------------------------------------il~~i~~ll~--~p~~~~p~n~~a--~~~~~~d~~~f~~~~~~ 105 (113)
||.+|++||. +|+.++|+|.++ +.++.+|++.|.++|++
T Consensus 157 ifHPNV~~~G~ICLsiL~~~~g~~~e~WsPa~stI~~VLlsIqsLL~~~~Pn~~dP~~~~a~a~~~~~~d~~~Y~~~vr~ 236 (323)
T 3ceg_A 157 RFNPNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEPYFNEPGYERSRGTPSGTQSSREYDGNIRQ 236 (323)
T ss_dssp CCBTTBCTTCBBCCGGGTSSCCCGGGSCCTTTCCHHHHHHHHHHHTSCSSGGGGSTTGGGGTTSHHHHHHHHHHHHHHHH
T ss_pred cccCCCCcCCeEechhhccccCCCcCCCCcCcCCHHHHHHHHHHHHcCCCCCCCCccCHHHHHhhhhhhhHHHHHHHHHH
Confidence 6889999996 688899999987 68999999999999999
Q ss_pred HHHHhhC
Q 033703 106 WTQKYAM 112 (113)
Q Consensus 106 ~~~k~a~ 112 (113)
|+++||+
T Consensus 237 ~t~k~A~ 243 (323)
T 3ceg_A 237 ATVKWAM 243 (323)
T ss_dssp HHHHHTT
T ss_pred HHHHHhh
Confidence 9999986
No 44
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Probab=99.95 E-value=1.7e-28 Score=160.25 Aligned_cols=91 Identities=31% Similarity=0.594 Sum_probs=81.3
Q ss_pred hHHHHHHHHHHhhcC-CCCCeeeeecC-C--CceEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCcH-----------
Q 033703 2 ASKRILKELKDLQKD-PPTSCSAGPVA-E--DMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPK----------- 66 (113)
Q Consensus 2 a~~Rl~~E~~~l~~~-~~~~~~~~~~~-~--~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~----------- 66 (113)
+.+||++|+++++++ ++.|+++.+.+ + |+++|+++|.||++|+|+||.|+++|.||++||++||+
T Consensus 7 ~~~RL~kEl~~l~~~~~~~~~~~~~~~~~d~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn 86 (138)
T 1jat_B 7 RNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPC 86 (138)
T ss_dssp HHHHHHHHHHHHHC----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCTT
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCcceEEEEEEECCCCCCccceEEEEEEECCCCCCCCCCceEEEcccccCC
Confidence 468999999999998 78899998854 3 48999999999999999999999999999999999999
Q ss_pred --------------------------HHHHHHHhhcCCCCCCCccHHHHHHH
Q 033703 67 --------------------------VLLSICSLLTDPNPDDPLVPEIAHMY 92 (113)
Q Consensus 67 --------------------------il~~i~~ll~~p~~~~p~n~~a~~~~ 92 (113)
||.+|++||.+||+++|+|++||.+|
T Consensus 87 v~~~~G~i~~cL~~l~~W~p~~~i~~vl~~i~~ll~~pn~~~p~~~~~~~~y 138 (138)
T 1jat_B 87 VNPTTGEVQTDFHTLRDWKRAYTMETLLLDLRKEMATPANKKLRQPKEGETF 138 (138)
T ss_dssp BCTTTCBBCTTSHHHHTCCTTCCHHHHHHHHHHHHTSHHHHTSCCCCTTCBC
T ss_pred EeCCCCEEeeecccCCCCCCcCcHHHHHHHHHHHHcCCCCCCCCCcchhhcC
Confidence 78899999999999999999998764
No 45
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Probab=99.94 E-value=3.9e-27 Score=157.09 Aligned_cols=88 Identities=32% Similarity=0.502 Sum_probs=80.4
Q ss_pred hHHHHHHHHHHhhcCCCCC-eeeee-cCCC--ceEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCcH-----------
Q 033703 2 ASKRILKELKDLQKDPPTS-CSAGP-VAED--MFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPK----------- 66 (113)
Q Consensus 2 a~~Rl~~E~~~l~~~~~~~-~~~~~-~~~~--~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~----------- 66 (113)
+.+||++|++++++++++| +++.+ +++| +++|+++|.||++|+|+||.|+++|.||++||++||+
T Consensus 26 ~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~~l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~HPN 105 (160)
T 2a4d_A 26 RNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNG 105 (160)
T ss_dssp HHHHHHHHHHHHHSCCTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCTT
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEecCCccccceeeEEEEECCCCCCccCeEEEEEEECCCcCCCCCcEEEEecCceeCC
Confidence 5689999999999998888 67776 3454 8999999999999999999999999999999999999
Q ss_pred ---------------------------HHHHHHHhhc-CCCCCCCccHHHH
Q 033703 67 ---------------------------VLLSICSLLT-DPNPDDPLVPEIA 89 (113)
Q Consensus 67 ---------------------------il~~i~~ll~-~p~~~~p~n~~a~ 89 (113)
||.+|++||. +||.++|+|.|||
T Consensus 106 V~~~~G~ICl~iL~~~~~WsP~~ti~~vL~sI~~ll~~~pn~~~P~n~eaa 156 (160)
T 2a4d_A 106 VNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQ 156 (160)
T ss_dssp BCTTTCBBCGGGSHHHHTCCTTCCHHHHHHHHHHHHTSTTTTTCCCCCTTC
T ss_pred EECCCCEEehhhcCCccCCCccCcHHHHHHHHHHHHccCCCCCCCCChhhc
Confidence 8899999995 6999999999987
No 46
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1
Probab=99.94 E-value=1.5e-26 Score=148.83 Aligned_cols=80 Identities=35% Similarity=0.689 Sum_probs=70.9
Q ss_pred hHHHHHHHHHHhhcCCCCCeeeeecCCCceEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCcH---------------
Q 033703 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPK--------------- 66 (113)
Q Consensus 2 a~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~--------------- 66 (113)
|.+||++|+++++++++.|+++.++++|+++|+++|.||++|+|+||.|+++|.||++||++||+
T Consensus 7 a~~RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HPnv~~ 86 (125)
T 2fo3_A 7 ANYRIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVYS 86 (125)
T ss_dssp --CHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCBTTBCT
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEeCcchhhhhheEEeCCCCCCcCCCEEEEEEEcCCCCCCCCCEEEEeCCCCCCCcCCC
Confidence 67999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ---------------------HHHHHHHhhcCCCCC
Q 033703 67 ---------------------VLLSICSLLTDPNPD 81 (113)
Q Consensus 67 ---------------------il~~i~~ll~~p~~~ 81 (113)
||.+|++||.+|+..
T Consensus 87 ~G~iCl~iL~~~W~P~~~i~~vl~si~~ll~~p~~~ 122 (125)
T 2fo3_A 87 NGDICLSLLGDDYNPSLSISGLVLSIISMLSSAKEK 122 (125)
T ss_dssp TSBBCCGGGTTTCCTTCCHHHHHHHHHHHHC-----
T ss_pred CCEEEchhcCCCCCCCCcHHHHHHHHHHHHhCcccc
Confidence 888999999988765
No 47
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=99.94 E-value=6.3e-26 Score=154.70 Aligned_cols=82 Identities=29% Similarity=0.718 Sum_probs=77.8
Q ss_pred ChHHHHHHHHHHhhcCCCCCeeeeecCCCceEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCcH--------------
Q 033703 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPK-------------- 66 (113)
Q Consensus 1 ~a~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~-------------- 66 (113)
.|.+||++|+++|++++++||.+.++++|+++|+++|.||++|||+||.|+++|.||++||++||+
T Consensus 14 ~a~~RL~kEl~~l~~~~~~~i~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~v~f~T~~~~~~~~G 93 (187)
T 2f4w_A 14 TATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNGRFKCNT 93 (187)
T ss_dssp CHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCSSBCTTS
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccCCCceeccCC
Confidence 367999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ----------------------HHHHHHHhhcCCCCCC
Q 033703 67 ----------------------VLLSICSLLTDPNPDD 82 (113)
Q Consensus 67 ----------------------il~~i~~ll~~p~~~~ 82 (113)
||.+|++||.+|+++.
T Consensus 94 ~ICL~iL~~~~~~W~P~~ti~~vL~si~sll~~p~p~~ 131 (187)
T 2f4w_A 94 RLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTL 131 (187)
T ss_dssp CBC----------CCTTCCHHHHHHHHHHHHHSCCCCT
T ss_pred eEeeeccccCccCCCCcCcHHHHHHHHHHHhcCCCCCC
Confidence 7889999999998764
No 48
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}
Probab=99.93 E-value=7.5e-26 Score=147.43 Aligned_cols=65 Identities=35% Similarity=0.726 Sum_probs=63.2
Q ss_pred hHHHHHHHHHHhhcCCCCCeeeeecCCCceEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCcH
Q 033703 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPK 66 (113)
Q Consensus 2 a~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~ 66 (113)
|.+||++|+++++++++.|+++.+.++|+++|+++|.||++|+|+||.|+++|.||++||++||+
T Consensus 21 ~~~RL~kEl~~l~~~~~~~~~~~~~~~nl~~W~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~ 85 (136)
T 2h2y_A 21 ANYRIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPI 85 (136)
T ss_dssp HHHHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCE
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEeccccccccEEEEECCCCCceeCCEEEEEEEeCCCCCCCCCE
Confidence 67999999999999999999999989999999999999999999999999999999999999999
No 49
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}
Probab=99.93 E-value=1.2e-26 Score=156.07 Aligned_cols=88 Identities=32% Similarity=0.502 Sum_probs=80.3
Q ss_pred hHHHHHHHHHHhhcCCCCC-eeeee-cCCC--ceEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCcH-----------
Q 033703 2 ASKRILKELKDLQKDPPTS-CSAGP-VAED--MFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPK----------- 66 (113)
Q Consensus 2 a~~Rl~~E~~~l~~~~~~~-~~~~~-~~~~--~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~----------- 66 (113)
+.+||++|++++++++++| +++.+ +++| +++|+++|.||++|+|+||.|+++|.||++||++||+
T Consensus 36 ~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~HPN 115 (170)
T 2hlw_A 36 RNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNG 115 (170)
T ss_dssp HHHHHHHHHHHHHHCCGGGCEEEEESSTTCSSCCBEEEEECCCSSSTTSSCCBCEEEECCSSCTTSCCEEEECBCCCCSS
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEecCcccccceeeEEEEeCCCCCCcCCcEEEEEEECCCCCCCCCCeeEEecccccCC
Confidence 5799999999999998888 66766 4454 8999999999999999999999999999999999999
Q ss_pred ---------------------------HHHHHHHhhcC-CCCCCCccHHHH
Q 033703 67 ---------------------------VLLSICSLLTD-PNPDDPLVPEIA 89 (113)
Q Consensus 67 ---------------------------il~~i~~ll~~-p~~~~p~n~~a~ 89 (113)
||.+|++||.+ ||.++|+|.|||
T Consensus 116 V~~~~G~ICl~iL~~~~~WsP~~ti~~vL~sI~~ll~~~pn~~~P~n~eaa 166 (170)
T 2hlw_A 116 VNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQ 166 (170)
T ss_dssp BCSSSCBBCTTTCHHHHTCCSSCCHHHHHHHHHHHHHSTTTSSSCCCSSCC
T ss_pred EeCCCCEEEhhhcCCCCCCCccCcHHHHHHHHHHHHccCCCCCCCCCcccc
Confidence 88999999975 999999999987
No 50
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1
Probab=99.91 E-value=3e-24 Score=139.79 Aligned_cols=65 Identities=34% Similarity=0.688 Sum_probs=61.5
Q ss_pred HHHHHHHHHHhhcCCCCCeeee--ecCCCceEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCcHH
Q 033703 3 SKRILKELKDLQKDPPTSCSAG--PVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKV 67 (113)
Q Consensus 3 ~~Rl~~E~~~l~~~~~~~~~~~--~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~i 67 (113)
.+||++|++++++++++|+++. ++++|+++|+++|.||++|||+||.|+++|.||++||++||+|
T Consensus 24 ~~RL~kEl~~l~~~~~~gi~v~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v 90 (136)
T 2a7l_A 24 QKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQV 90 (136)
T ss_dssp CHHHHHHHHHHHHSCCTTCCCCTTCCCCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEE
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEeeCccccceeEEEEECCCCCccccEEEEEEEECCCCCCCCCCEE
Confidence 4999999999999999999864 7889999999999999999999999999999999999999993
No 51
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Probab=99.89 E-value=7.4e-25 Score=149.29 Aligned_cols=102 Identities=23% Similarity=0.485 Sum_probs=88.6
Q ss_pred hHHHHHHHHHHhhcCC---CCCeeeeecCCCceEEEEEEeCC-CCCCCCC-----------cEEEEEEEcCCCCCCCCcH
Q 033703 2 ASKRILKELKDLQKDP---PTSCSAGPVAEDMFHWQATIMGP-SDSPYAG-----------GVFLVTIHFPPDYPFKPPK 66 (113)
Q Consensus 2 a~~Rl~~E~~~l~~~~---~~~~~~~~~~~~~~~w~~~i~gp-~~t~y~g-----------g~f~~~i~~p~~YP~~pP~ 66 (113)
|.+||++|+++|++++ +.++++.+.++|+++|+++|.|| ++|+|+| |.|+++|.||++||++||+
T Consensus 28 a~~RL~kEl~~l~~~~~~~~~~~~~~p~~dnl~~W~~~I~Gp~~~tpy~ggl~~~~~~~g~g~f~l~i~fp~~YP~~PP~ 107 (186)
T 1zuo_A 28 ASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPF 107 (186)
T ss_dssp HHHHHHHHHHHHHTSHHHHTTSEEEEEETTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCTTTTSSCCE
T ss_pred HHHHHHHHHHHHHhCCCCCCCcEEEEEcCCccceeEEEEECCCCCCCccccchhhccccCceEEEEEEECCCCCCCCCCe
Confidence 6799999999999988 68899999999999999999997 9999998 8999999999999999998
Q ss_pred -------------------------------------HHHHHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHH
Q 033703 67 -------------------------------------VLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQK 109 (113)
Q Consensus 67 -------------------------------------il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~~~~~~~k 109 (113)
||.+|++||.+|+.. ..+..++.+|.+.+++.+.+
T Consensus 108 V~f~tpi~hPnnV~~~G~ICL~iL~~~~WsP~~ti~~VL~sI~slL~~p~a~--------~~~~~~~~~Y~~~~~~~~~~ 179 (186)
T 1zuo_A 108 VRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVIMQINATLVKGKAR--------VQFGANKNQYNLARAQQSYN 179 (186)
T ss_dssp EEEEESCEESTTBCGGGBBCCGGGSTTTCCTTSCHHHHHHHHHHHHHHTTCE--------ECTTCCTTCCCHHHHHHHHH
T ss_pred EEEeCCccCCCccCCCCcEEeccCCCCCCCCcCcHHHHHHHHHHHHcCCChh--------HhhccCHHHHhHHHHHHHHH
Confidence 899999999998543 24455667788887777765
Q ss_pred hh
Q 033703 110 YA 111 (113)
Q Consensus 110 ~a 111 (113)
.+
T Consensus 180 ~~ 181 (186)
T 1zuo_A 180 SI 181 (186)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 52
>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A
Probab=99.59 E-value=1.7e-16 Score=105.30 Aligned_cols=59 Identities=17% Similarity=0.323 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhhcCCCCCeeeeecCCCceEEEEEEeCCCCCCCCCc----------EEEEEEEcCCCCCCCCcHH
Q 033703 3 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGG----------VFLVTIHFPPDYPFKPPKV 67 (113)
Q Consensus 3 ~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg----------~f~~~i~~p~~YP~~pP~i 67 (113)
.+||++|++.|++ ++.+.++|++.|.+.+.||++|+|+|| .|.+++.||++||++||+|
T Consensus 34 ~~RL~eE~k~L~k------~v~p~k~n~~~W~~ii~Gp~gT~WeGgcw~~~~~~~y~F~L~~~fPe~YP~~PPeV 102 (172)
T 2z6o_A 34 VQRLKEEYQSLIR------YVENNKNADNDWFRLESNKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEI 102 (172)
T ss_dssp HHHHHHHHHHHHH------HHHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCC
T ss_pred HHHHHHHHHHHHH------HhccCccccceeEEeecCCCCCcccCcccccccccceEEEEEEECCCCCCCCCCee
Confidence 7999999999998 356677899999999999999999999 9999999999999999994
No 53
>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4
Probab=98.94 E-value=1.7e-10 Score=75.20 Aligned_cols=59 Identities=22% Similarity=0.415 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhhcCCCCCeeeeecCCCceEEEEEEeCCCCCCCCCc----------EEEEEEEcCCCCCCCCcHH
Q 033703 3 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGG----------VFLVTIHFPPDYPFKPPKV 67 (113)
Q Consensus 3 ~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg----------~f~~~i~~p~~YP~~pP~i 67 (113)
..||..|+..|-+. +....++-..|...+.||++|+|.|+ .|.+++.||++||..||+|
T Consensus 36 ~~RlkeEy~alI~y------v~~nK~~d~dWf~~~sn~~GT~W~G~cw~~~~~~kyeFkLefdiP~tYP~tPPeI 104 (168)
T 3kpa_A 36 TARLKEEYASLITY------VEHNKASDSHWFHLESNPQGTRWYGTCWTYYKNEKYEFEMNFDIPVTYPQAPPEI 104 (168)
T ss_dssp HHHHHHHHHHHHHH------HHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCC
T ss_pred HHHHHHHHHHHHHH------HHhcccccCCeeeecCCCCCCcccCccceeeccceeEEEEEEeCCccCCCCCCEe
Confidence 37999999988541 22234455678889999999999999 9999999999999999994
No 54
>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*
Probab=98.77 E-value=2e-08 Score=66.62 Aligned_cols=63 Identities=17% Similarity=0.261 Sum_probs=44.3
Q ss_pred HHHHHHHHHhhcC-CC--CCeeeeecCCCceEEEEEEeCCCCCCCCCcE---EEEEEEcCCCCCCCCcH
Q 033703 4 KRILKELKDLQKD-PP--TSCSAGPVAEDMFHWQATIMGPSDSPYAGGV---FLVTIHFPPDYPFKPPK 66 (113)
Q Consensus 4 ~Rl~~E~~~l~~~-~~--~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~---f~~~i~~p~~YP~~pP~ 66 (113)
+|..+|+..+.+. +. +...+...++...++-+.+.|.-.++|+||+ |.+.|.||++||++||.
T Consensus 31 ~~~~~dv~~~l~~yp~L~p~t~~yt~~dG~~~~Ll~l~Gtipv~y~g~~~Yn~pi~IwlP~~YP~~PP~ 99 (162)
T 3r3q_A 31 RTTFHDSLALLDNFHSLRPRTRVFTHSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPF 99 (162)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEEEECTTSCEEEEEEEEEEEECSCCTTSCCEEEEEEECCTTTTTSCCE
T ss_pred hHHHHHHHHHHHhCCCCceeeeeEEcCCCChheEEEEECccCccccCcccccccEEEEeCcccCCCCCE
Confidence 5667777776542 21 1122233445566677777777678999999 88999999999998876
No 55
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A
Probab=97.36 E-value=0.0002 Score=46.58 Aligned_cols=36 Identities=25% Similarity=0.681 Sum_probs=32.0
Q ss_pred CCceEEEEEEeCCCCCCCCCcEEEE--EEEcCCCCCCCCcHH
Q 033703 28 EDMFHWQATIMGPSDSPYAGGVFLV--TIHFPPDYPFKPPKV 67 (113)
Q Consensus 28 ~~~~~w~~~i~gp~~t~y~gg~f~~--~i~~p~~YP~~pP~i 67 (113)
.+++.|.++|. ..|+|++|.+ .|.||++||++||.+
T Consensus 51 ~~LL~l~GtIp----v~y~g~~y~iPi~Iwlp~~YP~~pP~v 88 (146)
T 3obq_A 51 RELMNLTGTIP----VPYRGNTYNIPICLWLLDTYPYNPPIC 88 (146)
T ss_dssp CEEEEEEEEEE----EECSSCEEEEEEEEECCTTTTTSCCEE
T ss_pred heEEEEEEEee----eeecCccccceEEEEeCccCCCCCCEE
Confidence 57899999996 5799999995 999999999999983
No 56
>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A
Probab=95.75 E-value=0.11 Score=32.25 Aligned_cols=62 Identities=13% Similarity=0.148 Sum_probs=35.9
Q ss_pred HHHHHHHHhhcCCCCCeeeeecC--CCceEEEEEEeCCCCCCC--CCcEEEEEEEcCCCCCCCCcH
Q 033703 5 RILKELKDLQKDPPTSCSAGPVA--EDMFHWQATIMGPSDSPY--AGGVFLVTIHFPPDYPFKPPK 66 (113)
Q Consensus 5 Rl~~E~~~l~~~~~~~~~~~~~~--~~~~~w~~~i~gp~~t~y--~gg~f~~~i~~p~~YP~~pP~ 66 (113)
....|+..|+-.=+..+...... .+...+.+.|..+.+..- ..-.+.+.|.+|++||..+|.
T Consensus 12 ~~~~EleaL~SIY~de~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~L~~~~p~~YP~~~P~ 77 (128)
T 2day_A 12 VLPSEVEVLESIYLDELQVIKGNGRTSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQ 77 (128)
T ss_dssp HHHHHHHHHHHHSTTTEEEECCTTSSCCEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCCE
T ss_pred HHHHHHHHHHHHCCCceEEecCCCCCCCeEEEEEEecCCCCCccccceeEEEEEEcCCCCCCCCCC
Confidence 45677777765333344433211 134455566642221110 124788999999999999997
No 57
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.36 E-value=0.079 Score=32.87 Aligned_cols=61 Identities=16% Similarity=0.190 Sum_probs=37.1
Q ss_pred HHHHHHHHHhhcCCCCCeeeeecCCCceEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCcH
Q 033703 4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPK 66 (113)
Q Consensus 4 ~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~ 66 (113)
.+...|+..|+..=++.+.+. .+....+.+.|..-.+..-..-.+.+.|.+|++||..||.
T Consensus 13 e~q~~EleaL~sIy~d~~~~~--~~~~~~~~i~i~~~~~~~~~~~~~~L~v~~p~~YP~~~P~ 73 (128)
T 2ebm_A 13 EEQRNELEALESIYPDSFTVL--SENPPSFTITVTSEAGENDETVQTTLKFTYSEKYPDEAPL 73 (128)
T ss_dssp HHHHHHHHHHHHHCSSSEEEC--CSSSCEEEECCBCCCCTTSCCCBEEEEEECCSSTTTSCCE
T ss_pred HHHHHHHHHHHHHccCceEEc--cCCCCEEEEEEecCCCCCcCceeEEEEEEeCCCCCCCCce
Confidence 455678877765323344332 2234566666652111112334789999999999999998
No 58
>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}
Probab=94.98 E-value=0.17 Score=31.79 Aligned_cols=61 Identities=13% Similarity=0.201 Sum_probs=35.7
Q ss_pred HHHHHHHHhhcCCCCCeeeeecC------CCceEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCcH
Q 033703 5 RILKELKDLQKDPPTSCSAGPVA------EDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPK 66 (113)
Q Consensus 5 Rl~~E~~~l~~~~~~~~~~~~~~------~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~ 66 (113)
+-..|+..|+..=+..+...... +....+.+.|. +..+.-..-.+.+.+.+|++||..||.
T Consensus 14 ~q~~EleaL~SIY~d~~~~~~~~~~~~~~~~~~~f~I~l~-~~~~~~~~~~~~L~~~~p~~YP~~~P~ 80 (138)
T 2yz0_A 14 IQCNELEAIRSIYMDDFTDLTKRKSSWDKQPQIIFEITLR-SVDKEPVESSITLHFAMTPMYPYTAPE 80 (138)
T ss_dssp HHHHHHHHHHTTSSSSEECCSTTSSSSCSSCCSCEEEEEE-CSSCSSCCCEEEEEEECCSSTTSSCCE
T ss_pred HHHHHHHHHHHHChhhheecccccccccCCCCcEEEEEEe-cCCCCCCceEEEEEEECCCCCCCCCCe
Confidence 34567777764322333322110 12456677776 332211234788999999999999998
No 59
>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=93.89 E-value=0.4 Score=30.84 Aligned_cols=18 Identities=17% Similarity=0.490 Sum_probs=17.3
Q ss_pred EEEEEEEcCCCCCCCCcH
Q 033703 49 VFLVTIHFPPDYPFKPPK 66 (113)
Q Consensus 49 ~f~~~i~~p~~YP~~pP~ 66 (113)
.+.+.|.+|.+||..+|.
T Consensus 76 ~i~L~v~lP~~YP~~~P~ 93 (154)
T 2daw_A 76 KIDLQVTMPHSYPYLALQ 93 (154)
T ss_dssp EEEEEEEECSSTTSSCCE
T ss_pred eEEEEEEcCCCCCCCCCc
Confidence 899999999999999998
No 60
>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.22 E-value=0.25 Score=30.63 Aligned_cols=60 Identities=17% Similarity=0.097 Sum_probs=34.9
Q ss_pred HHHHHHHhhcC-CC-CCeeeee-cCCCceEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCcH
Q 033703 6 ILKELKDLQKD-PP-TSCSAGP-VAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPK 66 (113)
Q Consensus 6 l~~E~~~l~~~-~~-~~~~~~~-~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~ 66 (113)
...|+..|+-. +. ..+.... ...+...+.+.|. +.+..=..-.+.+.|.+|++||..||.
T Consensus 12 q~~EleaL~SIy~d~~e~~~~~~~~~~~~~f~i~l~-~~~~~~~~~~~~L~~~~p~~YP~~~P~ 74 (128)
T 2ebk_A 12 VQEELSVLAAIFCRPHEWEVLSRSETDGTVFRIHTK-AEGFMDADIPLELVFHLPVNYPSCLPG 74 (128)
T ss_dssp HHHHHHHHHHHHCCTTTCCCSEECSSSCEEEEEEEE-CCTTTTCCCEEEEEEEECSSTTSSCCC
T ss_pred HHHHHHHHHHHcCCCCceEEecCCCCCCCeEEEEec-CCCCCCCCeEEEEEEECCCCCCCCCCe
Confidence 45577666542 11 1233221 1123467777776 332110124799999999999999998
No 61
>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3
Probab=89.32 E-value=0.21 Score=31.21 Aligned_cols=61 Identities=16% Similarity=0.128 Sum_probs=34.7
Q ss_pred HHHHHHHHhhcCCCCCeeeeecCC-----CceEEEEEEeCCCCC--CCCCcEEEEEEEcCCCCCCCCcH
Q 033703 5 RILKELKDLQKDPPTSCSAGPVAE-----DMFHWQATIMGPSDS--PYAGGVFLVTIHFPPDYPFKPPK 66 (113)
Q Consensus 5 Rl~~E~~~l~~~~~~~~~~~~~~~-----~~~~w~~~i~gp~~t--~y~gg~f~~~i~~p~~YP~~pP~ 66 (113)
+...|+..|+..=.+.+....... ....+.+.|. +.+. .-..-.+.+.|.||++||..+|.
T Consensus 14 ~q~~EleaL~SIY~d~~~~~~~~~~~~~~~~~~~~i~l~-~~~~~~~~~~~~~~L~v~~p~~YP~~~P~ 81 (137)
T 1ukx_A 14 RQDHELQALEAIYGSDFQDLRPDARGRVREPPEINLVLY-PQGLAGEEVYVQVELRVKCPPTYPDVVPE 81 (137)
T ss_dssp HHHHHHHHHHHHTSSSEEECCCCCSSSCCCCCCEEEEEC-CTTSCSSSCSCEEEEEECCCTTTTSSCCC
T ss_pred HHHHHHHHHHHHCcccceeccCcccCccCCCcEEEEEEe-cCCcCCcccceEEEEEEECCCCCCCCCCc
Confidence 456677777643233343321111 1345556665 3221 00124689999999999999998
No 62
>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=89.15 E-value=0.9 Score=28.93 Aligned_cols=19 Identities=26% Similarity=0.532 Sum_probs=17.4
Q ss_pred cEEEEEEEcCCCCCCCCcH
Q 033703 48 GVFLVTIHFPPDYPFKPPK 66 (113)
Q Consensus 48 g~f~~~i~~p~~YP~~pP~ 66 (113)
-.+.+.|.+|.+||..||.
T Consensus 73 ~~l~L~v~lP~~YP~~~P~ 91 (152)
T 2dax_A 73 AMFSLACILPFKYPAVLPE 91 (152)
T ss_dssp EEEEEEEEECSSTTSSCCC
T ss_pred ceEEEEEECCCCCCCCCCe
Confidence 4689999999999999998
No 63
>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}
Probab=86.36 E-value=2.8 Score=27.97 Aligned_cols=53 Identities=17% Similarity=0.265 Sum_probs=39.4
Q ss_pred HHHHHHHHHhhcCCCCCeeeeecCCCceEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCcH
Q 033703 4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPK 66 (113)
Q Consensus 4 ~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~ 66 (113)
.+|.+|+.++-=+. +.-.+.++....+.+..- .|....++|.++.+||.++|.
T Consensus 4 ~~li~Ei~~iGW~~-----l~~id~~~~~i~l~~~D~-----~gR~H~l~v~l~~~yp~~~P~ 56 (186)
T 3zqs_A 4 SSLIEEIGTLGWDK-----LVYADTCFSTIKLKAEDA-----SGREHLITLKLKAKYPAESPD 56 (186)
T ss_dssp CSHHHHHHHHCGGG-----EEEECTTSSEEEEEEECT-----TSCEEEEEEECCTTTTTSCCE
T ss_pred HHHHHHHHHhCCce-----eeeecCCccEEEEEEEeC-----CCCeEEEEEEECCCCCCCCCe
Confidence 36788888873221 222356788888888732 478999999999999999998
No 64
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=84.59 E-value=0.19 Score=30.86 Aligned_cols=34 Identities=15% Similarity=0.132 Sum_probs=0.0
Q ss_pred CCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhhC
Q 033703 79 NPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAM 112 (113)
Q Consensus 79 ~~~~p~n~~a~~~~~~d~~~f~~~~~~~~~k~a~ 112 (113)
....|.+-..|++|.+|++.|...++.|+.-+|+
T Consensus 22 ~~~~PQDA~VA~qy~~~~~~f~~TAr~WT~~~a~ 55 (108)
T 2cwb_A 22 TTTEAVDAATAEKVFKQYANDNGVDGEWTYDDAT 55 (108)
T ss_dssp ----------------------------------
T ss_pred ccCCchhHHHHHHHHhchhccccccccccccCcC
Confidence 3456889999999999999999999999966553
No 65
>3u3c_B Paxillin LD2 peptide; 4-helix bundle, focal adhesion, tyrosine kinase, transferase-signaling protein complex; 3.70A {Homo sapiens}
Probab=79.28 E-value=1.6 Score=19.07 Aligned_cols=19 Identities=37% Similarity=0.704 Sum_probs=16.2
Q ss_pred HHHHHHHHHHhhcCCCCCe
Q 033703 3 SKRILKELKDLQKDPPTSC 21 (113)
Q Consensus 3 ~~Rl~~E~~~l~~~~~~~~ 21 (113)
+.||.-|+..++.+++.|.
T Consensus 7 ldrlllelnavqhnppsg~ 25 (26)
T 3u3c_B 7 LDRLLLELNAVQHNPPSGX 25 (26)
T ss_pred HHHHHHHHhhhccCCCCCC
Confidence 5799999999999988774
No 66
>2rp4_A Transcription factor P53; DMP53, oligomerization domain, tetramerizaiton domain, nucleus; NMR {Drosophila melanogaster}
Probab=66.48 E-value=15 Score=20.64 Aligned_cols=34 Identities=24% Similarity=0.463 Sum_probs=25.0
Q ss_pred CceEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCcH--HHHHHHHhhc
Q 033703 29 DMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPK--VLLSICSLLT 76 (113)
Q Consensus 29 ~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~--il~~i~~ll~ 76 (113)
-...|.|.=. .+|.|++.|++|. + +|.+|..|+.
T Consensus 8 ~p~dW~VsRt-------~dGdYrL~itcpk-------Ke~LLqSIEgmik 43 (76)
T 2rp4_A 8 SAAEWNVSRT-------PDGDYRLAITCPN-------KEWLLQSIEGMIK 43 (76)
T ss_dssp SSCCCEEECC-------TTTBEEEEEEESC-------HHHHHHHHHHHHH
T ss_pred CCccceeeec-------cCCceEEEEEeCc-------HHHHHHHHHHHHH
Confidence 3556777654 3688999999976 4 6778877765
No 67
>1zoq_C CREB-binding protein, interferon regulatory factor 3; transcription regulation, transferase, transcription/transferase complex; 2.37A {Homo sapiens} SCOP: a.153.1.1 PDB: 1jjs_A
Probab=53.30 E-value=10 Score=19.34 Aligned_cols=39 Identities=21% Similarity=0.349 Sum_probs=28.9
Q ss_pred HhhcCCCCCCC-ccHHHHHHHHHCHHHHHHHHHHHHHHhhCC
Q 033703 73 SLLTDPNPDDP-LVPEIAHMYKSDKAKYESTARSWTQKYAMG 113 (113)
Q Consensus 73 ~ll~~p~~~~p-~n~~a~~~~~~d~~~f~~~~~~~~~k~a~~ 113 (113)
.-+..|+ +| .+..+..+++.|+......+++-..+|++.
T Consensus 8 ~tlksp~--sp~qqqqvl~ILksnPqLMAAfIkQR~~~y~~~ 47 (47)
T 1zoq_C 8 RTLKSPS--SPQQQQQVLNILKSNPQLMAAFIKQRTAKYVAN 47 (47)
T ss_dssp HTCCSCC--CHHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCC
T ss_pred HHhcCCC--CHHHHHHHHHHHHcCHHHHHHHHHHHHHHhccC
Confidence 3344454 33 466788888999999999999988888763
No 68
>2fkn_A Urocanate hydratase; rossman fold, lyase; HET: NAD; 2.20A {Bacillus subtilis}
Probab=42.85 E-value=29 Score=26.76 Aligned_cols=27 Identities=15% Similarity=0.161 Sum_probs=23.4
Q ss_pred cHHHHHHHHHCHHHHHHHHHHHHHHhh
Q 033703 85 VPEIAHMYKSDKAKYESTARSWTQKYA 111 (113)
Q Consensus 85 n~~a~~~~~~d~~~f~~~~~~~~~k~a 111 (113)
=.++..+..+|++.|.+.|++..++|.
T Consensus 277 ~ee~~~l~~~dp~~~~~~~~~Sm~rhv 303 (552)
T 2fkn_A 277 LDEADRLRQDTPELYVRLAKQSMKKHV 303 (552)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 367888888999999999999988874
No 69
>1x87_A Urocanase protein; structural genomics, protein STR initiative, MCSG, PSI, midwest center for structural genomi; HET: MSE NAD; 2.40A {Geobacillus stearothermophilus} SCOP: e.51.1.1
Probab=42.54 E-value=30 Score=26.71 Aligned_cols=27 Identities=19% Similarity=0.212 Sum_probs=23.3
Q ss_pred cHHHHHHHHHCHHHHHHHHHHHHHHhh
Q 033703 85 VPEIAHMYKSDKAKYESTARSWTQKYA 111 (113)
Q Consensus 85 n~~a~~~~~~d~~~f~~~~~~~~~k~a 111 (113)
=.++..+..+|++.|.+.|++..++|.
T Consensus 276 ~ee~~~l~~~dp~~~~~~~~~Sm~rhv 302 (551)
T 1x87_A 276 LDEAAELRARDPKQYIARAKQSIAAHV 302 (551)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 367888888899999999999988874
No 70
>1uwk_A Urocanate hydratase; hydrolase, urocanase, imidazolonepropionate, histidine metabolism, lyase; HET: NAD URO; 1.19A {Pseudomonas putida} SCOP: e.51.1.1 PDB: 1w1u_A* 1uwl_A* 2v7g_A*
Probab=42.08 E-value=31 Score=26.69 Aligned_cols=27 Identities=7% Similarity=-0.047 Sum_probs=23.4
Q ss_pred cHHHHHHHHHCHHHHHHHHHHHHHHhh
Q 033703 85 VPEIAHMYKSDKAKYESTARSWTQKYA 111 (113)
Q Consensus 85 n~~a~~~~~~d~~~f~~~~~~~~~k~a 111 (113)
=.++..+..+|++.|.+.|++..++|.
T Consensus 281 ~ee~~~l~~~dp~~~~~~~~~Sm~rhv 307 (557)
T 1uwk_A 281 WEQYRDRAQTEPAAVVKAAKQSMAVHV 307 (557)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 367888888999999999999988874
No 71
>2f4m_B UV excision repair protein RAD23 homolog B; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: a.189.1.1 PDB: 2f4o_B*
Probab=40.11 E-value=31 Score=18.56 Aligned_cols=20 Identities=5% Similarity=0.152 Sum_probs=17.7
Q ss_pred ccHHHHHHHHHCHHHHHHHH
Q 033703 84 LVPEIAHMYKSDKAKYESTA 103 (113)
Q Consensus 84 ~n~~a~~~~~~d~~~f~~~~ 103 (113)
.|++.+.+...|++.|.+..
T Consensus 37 ~nP~l~~~I~~n~e~Fl~ll 56 (61)
T 2f4m_B 37 ENPQLLQQISQHQEHFIQML 56 (61)
T ss_dssp HCHHHHHHHHHSHHHHHHHH
T ss_pred HCHHHHHHHHHCHHHHHHHH
Confidence 48999999999999998875
No 72
>1pve_A HHR23B, UV excision repair protein RAD23 homolog B; XPC binding domain, solution structure, nucleotide excision repair, chaps, DNA binding protein; NMR {Homo sapiens} SCOP: a.189.1.1
Probab=37.09 E-value=32 Score=19.20 Aligned_cols=22 Identities=5% Similarity=0.129 Sum_probs=19.1
Q ss_pred CccHHHHHHHHHCHHHHHHHHH
Q 033703 83 PLVPEIAHMYKSDKAKYESTAR 104 (113)
Q Consensus 83 p~n~~a~~~~~~d~~~f~~~~~ 104 (113)
-.|++.+++...|++.|.+...
T Consensus 38 ~~NPqL~q~I~~n~e~Fl~ll~ 59 (72)
T 1pve_A 38 RENPQLLQQISQHQEHFIQMLN 59 (72)
T ss_dssp TTCHHHHHHHHTTHHHHHHHHH
T ss_pred hHCHHHHHHHHHCHHHHHHHHc
Confidence 3589999999999999998874
No 73
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=37.04 E-value=46 Score=18.73 Aligned_cols=42 Identities=12% Similarity=0.235 Sum_probs=34.1
Q ss_pred HHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhh
Q 033703 70 SICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 111 (113)
Q Consensus 70 ~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~~~~~~~k~a 111 (113)
.|+.|+..-++...+.+++-.++.+=-+.|...+-..+.+.|
T Consensus 10 ~L~~Lv~~idp~~~ld~~vee~ll~lADdFV~~V~~~ac~lA 51 (76)
T 1h3o_B 10 KLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLA 51 (76)
T ss_dssp HHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777776778889999999998888889988888777666
No 74
>3kxt_A Chromatin protein CREN7; protein-DNA complex, crenarchaea chromatin protein, minor-GR binding, methylation; 1.60A {Sulfolobus solfataricus} PDB: 2jtm_A 3lwh_A* 3lwi_A*
Probab=33.71 E-value=30 Score=18.28 Aligned_cols=14 Identities=43% Similarity=0.942 Sum_probs=9.8
Q ss_pred CcEEEEEEEcCCCCCC
Q 033703 47 GGVFLVTIHFPPDYPF 62 (113)
Q Consensus 47 gg~f~~~i~~p~~YP~ 62 (113)
|-.| +-.+|++||.
T Consensus 43 Gk~f--R~k~pddy~~ 56 (56)
T 3kxt_A 43 GKYF--RHKLPDDYPI 56 (56)
T ss_dssp CCEE--EEECCTTCCC
T ss_pred CcEe--eeeCcCcCCC
Confidence 4444 4578999984
No 75
>2jrw_A Cyclic extended PEP.1; acetylcholine receptor, phage display, peptide cyclization, immune system; NMR {Synthetic}
Probab=33.10 E-value=14 Score=16.01 Aligned_cols=6 Identities=33% Similarity=1.043 Sum_probs=3.3
Q ss_pred EcCCCC
Q 033703 55 HFPPDY 60 (113)
Q Consensus 55 ~~p~~Y 60 (113)
++|++|
T Consensus 6 tlpeny 11 (26)
T 2jrw_A 6 TLPENY 11 (26)
T ss_dssp CCSSSS
T ss_pred ccchhh
Confidence 455555
No 76
>2k6w_A Putative uncharacterized protein TTHA1943; PCUA, copper transfer protein, metal transport; NMR {Thermus thermophilus} PDB: 2k6y_A 2k6z_A 2k70_A
Probab=29.47 E-value=52 Score=20.02 Aligned_cols=26 Identities=15% Similarity=0.259 Sum_probs=23.0
Q ss_pred EEEEEeCCCCCCCCCcEEEEEEEcCC
Q 033703 33 WQATIMGPSDSPYAGGVFLVTIHFPP 58 (113)
Q Consensus 33 w~~~i~gp~~t~y~gg~f~~~i~~p~ 58 (113)
.++.+.|.+..+=+|..+.+.+.|-+
T Consensus 82 ~HvML~gl~~~l~~G~~v~ltL~Fe~ 107 (120)
T 2k6w_A 82 YHFMLLGLKRPLKAGEEVELDLLFAG 107 (120)
T ss_dssp EEEEEEEESSCBCTTCEEEEEEEETT
T ss_pred eEEEEeCCCCCCCCCCEEEEEEEECC
Confidence 57899999888899999999999965
No 77
>1kbh_B CREB-binding protein, nuclear receptor coactivator; nuclear hormone receptors, ACTR, CBP, transcription; NMR {Mus musculus} SCOP: a.153.1.1 PDB: 2c52_A 2kkj_A 2l14_A
Probab=29.08 E-value=70 Score=16.98 Aligned_cols=46 Identities=17% Similarity=0.266 Sum_probs=34.1
Q ss_pred HHHHHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHhhCC
Q 033703 67 VLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAMG 113 (113)
Q Consensus 67 il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~~~~~~~k~a~~ 113 (113)
.|..|..-+..|. ..--+..+..+++.|+......+|+-+.+|.++
T Consensus 9 aLqqLl~tlksp~-speqqqqvl~ILksNPqLMAAfIKQR~~~~~~~ 54 (59)
T 1kbh_B 9 ALQDLLRTLKSPS-SPQQQQQVLNILKSNPQLMAAFIKQRTAKYVAN 54 (59)
T ss_dssp HHHHHHHHHHSCT-TTTCSTHHHHHHTTSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHhcc
Confidence 4555555566676 333567888999999999999999888888653
No 78
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=27.18 E-value=84 Score=17.28 Aligned_cols=30 Identities=13% Similarity=0.033 Sum_probs=23.6
Q ss_pred CCccHHHHHHHHHCHHHHHHHHHHHHHHhh
Q 033703 82 DPLVPEIAHMYKSDKAKYESTARSWTQKYA 111 (113)
Q Consensus 82 ~p~n~~a~~~~~~d~~~f~~~~~~~~~k~a 111 (113)
..++.+++..+..|-+...+.+-+-+.|++
T Consensus 22 ~~lsddaa~~LA~dvEyr~~eI~qeA~kfm 51 (70)
T 1taf_B 22 GSLSDDAAKELAEDVSIKLKRIVQDAAKFM 51 (70)
T ss_dssp CCBCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999998888877766655543
No 79
>3g9r_A Fusion complex of HIV-1 envelope glycoprotein and saccharomyces cerevisiae general...; GP41, MPER, membrane fusion, AIDS; 2.00A {Human immunodeficiency virus 1}
Probab=26.48 E-value=45 Score=16.32 Aligned_cols=12 Identities=42% Similarity=0.603 Sum_probs=9.8
Q ss_pred HHHHHHHHHHhh
Q 033703 3 SKRILKELKDLQ 14 (113)
Q Consensus 3 ~~Rl~~E~~~l~ 14 (113)
.+|+..|++.+.
T Consensus 30 ~~~~~~~~~~~~ 41 (42)
T 3g9r_A 30 IKRIENEIKRIK 41 (42)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 589999998875
No 80
>4div_S ORF46; distal tail protein, receptor-binding protein, phage basepla adsorption apparatus, genome injection device, viral protei; 3.80A {Lactococcus phage tp901-1}
Probab=26.24 E-value=1.4e+02 Score=20.02 Aligned_cols=55 Identities=5% Similarity=0.004 Sum_probs=33.0
Q ss_pred HHHHHHHHHhhcCCCCCeeeeecCCCceEEEEEEeCC---CCCCCCCcEEEEEEEcCCCC
Q 033703 4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGP---SDSPYAGGVFLVTIHFPPDY 60 (113)
Q Consensus 4 ~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp---~~t~y~gg~f~~~i~~p~~Y 60 (113)
+++.+|+..+.... ....+..+++--..|.+.+.+. ++..+ -+.+.+.+.+|+-|
T Consensus 89 ~~~~~~l~~~L~~~-~~~~Lif~depd~~y~a~~~~~~~~~~~~~-~~~~titf~cpdPy 146 (253)
T 4div_S 89 QEKFDTLKAFLIRQ-EDVPIIFNDDLEYTFYGRFKTADNVAGDTN-SIISSFTVLCSDPF 146 (253)
T ss_dssp HHHHHHHHHHHCCS-SCEEEEESSCCSCEEEEEEEEECCCCSSSS-EEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHhCcC-CcEEEEEcCCCCEEEEEEEcccccCCCcce-EEEEEEEEEecCCc
Confidence 45556887776433 2355555555457899998873 33333 25777777776543
No 81
>2lw9_A Unconventionnal myosin-X; MYO10 anti-CC, motor protein; NMR {Homo sapiens}
Probab=24.91 E-value=44 Score=17.23 Aligned_cols=15 Identities=40% Similarity=0.492 Sum_probs=11.8
Q ss_pred HHHHHHHHHHhhcCC
Q 033703 3 SKRILKELKDLQKDP 17 (113)
Q Consensus 3 ~~Rl~~E~~~l~~~~ 17 (113)
..||.+|+..|++..
T Consensus 8 ILRLErEIE~Lqrqk 22 (51)
T 2lw9_A 8 ILRLEKEIEDLQRMK 22 (51)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 468999999988754
No 82
>1x9l_A CUI-DR1885; copper binding protein, solution ST holo-form, structural proteomics in europe, spine, structur genomics; NMR {Deinococcus radiodurans} SCOP: b.2.10.1 PDB: 2jqa_A
Probab=23.43 E-value=54 Score=20.76 Aligned_cols=26 Identities=15% Similarity=0.153 Sum_probs=23.1
Q ss_pred EEEEEeCCCCCCCCCcEEEEEEEcCC
Q 033703 33 WQATIMGPSDSPYAGGVFLVTIHFPP 58 (113)
Q Consensus 33 w~~~i~gp~~t~y~gg~f~~~i~~p~ 58 (113)
+++.+.|.+..+-+|..+.+.|.|-+
T Consensus 107 ~HvML~gL~~~l~~G~~v~lTL~Fe~ 132 (149)
T 1x9l_A 107 DHVMLMGLKRPLKVGETVNITLKATD 132 (149)
T ss_dssp SEEEEEEECSCCCTTEEEEEEECBTT
T ss_pred eEEEEeCCCCCCCCCCEEEEEEEECC
Confidence 57889999999999999999999965
No 83
>4dac_A Computationally designed crystal forming protein; alpha-helix, three-helix bundle, coiled-coil protein, DE NOV computational protein design; 2.10A {Synthetic}
Probab=20.48 E-value=70 Score=13.96 Aligned_cols=13 Identities=38% Similarity=0.501 Sum_probs=10.2
Q ss_pred HHHHHHHHHHhhc
Q 033703 3 SKRILKELKDLQK 15 (113)
Q Consensus 3 ~~Rl~~E~~~l~~ 15 (113)
.+||.+|.-.+..
T Consensus 10 vkrlekevgkleg 22 (28)
T 4dac_A 10 VKRLEKEVGKLEG 22 (28)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhh
Confidence 5899999887753
Done!