Query 033705
Match_columns 113
No_of_seqs 104 out of 178
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 08:32:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033705.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033705hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bua_E HSNM1B, DNA cross-LINK 17.1 42 0.0014 18.7 0.7 22 25-46 7-28 (36)
2 1nkz_B Light-harvesting protei 12.6 1.4E+02 0.0048 16.9 2.2 25 52-79 6-31 (41)
3 3ua0_A Fibroin heavy chain; th 10.0 61 0.0021 23.0 0.0 9 7-15 13-21 (134)
4 1lgh_B LH II, B800/850, light 9.9 1.9E+02 0.0066 16.7 2.2 25 52-79 11-36 (45)
5 1v54_L VIIIA, cytochrome C oxi 9.7 3E+02 0.01 15.8 3.3 24 57-81 21-44 (47)
6 2y69_L Cytochrome C oxidase su 9.5 3.3E+02 0.011 16.5 3.3 23 57-80 37-59 (63)
7 1wrg_A LH-1, light-harvesting 8.3 3E+02 0.01 16.5 2.6 25 53-80 15-40 (55)
8 1dx7_A Light-harvesting protei 7.9 2.1E+02 0.007 16.8 1.7 25 52-79 14-39 (48)
9 2i88_A Colicin-E1; protein-mem 7.8 1.2E+02 0.0042 22.6 0.9 11 16-26 126-136 (191)
10 1col_A Colicin A; antibacteria 7.8 1.2E+02 0.0042 22.8 0.9 11 16-26 127-137 (204)
No 1
>3bua_E HSNM1B, DNA cross-LINK repair 1B protein; TRF2 TRFH domain dimerization domain apollo peptide, alternative splicing, cell cycle; HET: DNA; 2.50A {Homo sapiens}
Probab=17.07 E-value=42 Score=18.69 Aligned_cols=22 Identities=36% Similarity=0.496 Sum_probs=14.8
Q ss_pred HHHHHhhhhhhhhhcCCCCCCC
Q 033705 25 ALMYVLVPMPCLFFGGGSTQFL 46 (113)
Q Consensus 25 ~~~y~laPiP~~i~~~~~~~~d 46 (113)
.+=|+|+|+-.+=++.++.+.|
T Consensus 7 ALKYLLTPv~~l~a~~Ssr~FD 28 (36)
T 3bua_E 7 ALKYLLTPVNFFQAGYSSRRFD 28 (36)
T ss_pred HHHHHhhhHHHHhcccchhhHH
Confidence 4568999987766666555443
No 2
>1nkz_B Light-harvesting protein B-800/850, beta chain; light harvesting complex II, trans-membrane helices, rhodopi glucoside; HET: CXM RG1 BOG BCL; 2.00A {Rhodoblastus acidophilus} SCOP: f.3.1.1 PDB: 1kzu_B* 2fkw_B* 1ijd_B*
Probab=12.60 E-value=1.4e+02 Score=16.95 Aligned_cols=25 Identities=16% Similarity=0.154 Sum_probs=19.2
Q ss_pred chhhhH-HHHHHHHHHHHHhHHHHHHHhh
Q 033705 52 GGWIDA-AKFLTGASAVGSLAIPIILRHA 79 (113)
Q Consensus 52 ~~~~d~-~~FlTg~~vvSg~aLPiVL~H~ 79 (113)
...||+ ..|.+|+.+-.++|+ .||.
T Consensus 6 ~EA~EfH~~~~~~~~~F~~iA~---vAH~ 31 (41)
T 1nkz_B 6 EQSEELHKYVIDGTRVFLGLAL---VAHF 31 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 357888 889999988888875 5664
No 3
>3ua0_A Fibroin heavy chain; the double-layered-sheets, fibroin folding initiation, prote; 3.00A {Bombyx mori}
Probab=9.99 E-value=61 Score=22.96 Aligned_cols=9 Identities=44% Similarity=0.903 Sum_probs=0.0
Q ss_pred HHHHHHHhh
Q 033705 7 LLQILACAI 15 (113)
Q Consensus 7 lLvILsCAL 15 (113)
+++||-|||
T Consensus 13 ~~VILCCAL 21 (134)
T 3ua0_A 13 TFVILCCAL 21 (134)
T ss_dssp ---------
T ss_pred hhhhhhHHH
Confidence 578999999
No 4
>1lgh_B LH II, B800/850, light harvesting complex II; bacteriochlorophyll, dexter energy transfer, foerster exciton transfer mechanism; HET: BCL LYC DET HTO; 2.40A {Phaeospirillum molischianum} SCOP: f.3.1.1
Probab=9.90 E-value=1.9e+02 Score=16.70 Aligned_cols=25 Identities=32% Similarity=0.203 Sum_probs=19.6
Q ss_pred chhhhH-HHHHHHHHHHHHhHHHHHHHhh
Q 033705 52 GGWIDA-AKFLTGASAVGSLAIPIILRHA 79 (113)
Q Consensus 52 ~~~~d~-~~FlTg~~vvSg~aLPiVL~H~ 79 (113)
...||+ ..|.+|+.+-.++|+ .||.
T Consensus 11 ~EA~EfH~~~~~~~~~F~~iA~---vAH~ 36 (45)
T 1lgh_B 11 EEAIAVHDQFKTTFSAFIILAA---VAHV 36 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 457888 889999998888875 5664
No 5
>1v54_L VIIIA, cytochrome C oxidase polypeptide VIIC; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.6.1 PDB: 1oco_L* 1occ_L* 1ocz_L* 1ocr_L* 1v55_L* 2dyr_L* 2dys_L* 2eij_L* 2eik_L* 2eil_L* 2eim_L* 2ein_L* 2occ_L* 2ybb_W* 2zxw_L* 3abk_L* 3abl_L* 3abm_L* 3ag1_L* 3ag2_L* ...
Probab=9.70 E-value=3e+02 Score=15.75 Aligned_cols=24 Identities=13% Similarity=0.140 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhhhc
Q 033705 57 AAKFLTGASAVGSLAIPIILRHAHM 81 (113)
Q Consensus 57 ~~~FlTg~~vvSg~aLPiVL~H~~i 81 (113)
+....++ ...+||++|.+-.+-+.
T Consensus 21 ~~~~~~~-f~g~GF~~PF~i~~~Ql 44 (47)
T 1v54_L 21 LLAMMTL-FFGSGFAAPFFIVRHQL 44 (47)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHhHHHHHHHHH
Confidence 3334444 77899999998766543
No 6
>2y69_L Cytochrome C oxidase subunit 7C; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=9.54 E-value=3.3e+02 Score=16.51 Aligned_cols=23 Identities=13% Similarity=0.151 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhhh
Q 033705 57 AAKFLTGASAVGSLAIPIILRHAH 80 (113)
Q Consensus 57 ~~~FlTg~~vvSg~aLPiVL~H~~ 80 (113)
+..+++ ....+||++|.+-.+-+
T Consensus 37 ~~~~~~-~f~g~GF~~PF~i~~~Q 59 (63)
T 2y69_L 37 LLAMMT-LFFGSGFAAPFFIVRHQ 59 (63)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHhhhHHHHHHH
Confidence 555555 57889999999876544
No 7
>1wrg_A LH-1, light-harvesting protein B-880, beta chain; membrane protein, pigment binding, photosynthesis; NMR {Rhodospirillum rubrum}
Probab=8.25 E-value=3e+02 Score=16.46 Aligned_cols=25 Identities=12% Similarity=-0.008 Sum_probs=19.2
Q ss_pred hhhhH-HHHHHHHHHHHHhHHHHHHHhhh
Q 033705 53 GWIDA-AKFLTGASAVGSLAIPIILRHAH 80 (113)
Q Consensus 53 ~~~d~-~~FlTg~~vvSg~aLPiVL~H~~ 80 (113)
..||+ ..|++++.+..++|+ ++|--
T Consensus 15 EAqEfH~~f~~~~~~F~~iAv---vAH~L 40 (55)
T 1wrg_A 15 EAKEFHKIFTSSILVFFGVAA---FAHLL 40 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 46777 889999999888875 56653
No 8
>1dx7_A Light-harvesting protein B-875-beta chain; bacteriochlorophyll binding, membrane protein, photosynthesis; NMR {Rhodobacter sphaeroides} SCOP: f.3.1.1 PDB: 1jo5_A
Probab=7.86 E-value=2.1e+02 Score=16.76 Aligned_cols=25 Identities=16% Similarity=0.264 Sum_probs=19.6
Q ss_pred chhhhH-HHHHHHHHHHHHhHHHHHHHhh
Q 033705 52 GGWIDA-AKFLTGASAVGSLAIPIILRHA 79 (113)
Q Consensus 52 ~~~~d~-~~FlTg~~vvSg~aLPiVL~H~ 79 (113)
+..+|+ ..|.+|+.+-.++|+ +||.
T Consensus 14 ~EA~EfH~~~~~~~~~F~~iA~---vAH~ 39 (48)
T 1dx7_A 14 EQAQELHSVYMSGLWLFSAVAI---VAHL 39 (48)
T ss_dssp HHHHHHTHHHHHHHHHHTTHHH---HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 357888 899999998888875 5664
No 9
>2i88_A Colicin-E1; protein-membrane interactions, toxin-membrane interactions, toxin structure, voltage-gated channel, membrane protein; 2.50A {Escherichia coli}
Probab=7.81 E-value=1.2e+02 Score=22.60 Aligned_cols=11 Identities=27% Similarity=0.797 Sum_probs=9.1
Q ss_pred ccchHHHHHHH
Q 033705 16 YNNWWPMLSAL 26 (113)
Q Consensus 16 ~~nw~Pl~v~~ 26 (113)
.+||-||++=+
T Consensus 126 TgNW~Pl~lel 136 (191)
T 2i88_A 126 TGDWKPLFLTL 136 (191)
T ss_dssp HCCCHHHHHHH
T ss_pred CCCcHHHHHHH
Confidence 68999998765
No 10
>1col_A Colicin A; antibacterial protein; 2.40A {Escherichia coli} SCOP: f.1.1.1
Probab=7.78 E-value=1.2e+02 Score=22.81 Aligned_cols=11 Identities=27% Similarity=0.770 Sum_probs=9.2
Q ss_pred ccchHHHHHHH
Q 033705 16 YNNWWPMLSAL 26 (113)
Q Consensus 16 ~~nw~Pl~v~~ 26 (113)
.+||-||++=+
T Consensus 127 TgNW~Pl~~~l 137 (204)
T 1col_A 127 TGNWGPLMLEV 137 (204)
T ss_dssp HCCCHHHHHHH
T ss_pred CCCchHHHHHH
Confidence 68999998765
Done!