Query 033705
Match_columns 113
No_of_seqs 104 out of 178
Neff 5.0
Searched_HMMs 13730
Date Mon Mar 25 08:32:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033705.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033705hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v54l_ f.23.6.1 (L:) Mitochon 19.2 50 0.0036 18.0 2.9 30 51-82 15-44 (46)
2 d1iwga8 f.35.1.1 (A:513-566,A: 13.3 90 0.0065 20.8 3.7 45 58-104 160-205 (222)
3 d1jo5a_ f.3.1.1 (A:) Light-har 12.3 49 0.0036 18.2 1.6 25 52-79 14-39 (48)
4 d1lghb_ f.3.1.1 (B:) Light-har 10.6 84 0.0061 16.7 2.2 25 52-79 9-34 (43)
5 d1rh1a2 f.1.1.1 (A:313-511) Co 8.2 54 0.0039 22.9 0.9 11 16-26 125-135 (199)
6 d1q90m_ f.23.25.1 (M:) PetM su 7.3 80 0.0058 15.8 1.1 9 2-10 20-28 (34)
7 d1cola_ f.1.1.1 (A:) Colicin A 6.2 77 0.0056 22.0 0.9 11 16-26 123-133 (197)
8 d1wixa_ a.40.3.1 (A:) Hook hom 5.8 1E+02 0.0075 20.1 1.3 10 6-15 116-125 (164)
9 d1ciia1 f.1.1.1 (A:451-624) Co 5.7 86 0.0063 21.3 0.9 11 16-26 111-121 (174)
10 d1v54k_ f.23.5.1 (K:) Mitochon 4.7 2E+02 0.015 15.5 1.9 18 89-106 11-28 (49)
No 1
>d1v54l_ f.23.6.1 (L:) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) {Cow (Bos taurus) [TaxId: 9913]}
Probab=19.20 E-value=50 Score=17.99 Aligned_cols=30 Identities=13% Similarity=0.206 Sum_probs=20.8
Q ss_pred CchhhhHHHHHHHHHHHHHhHHHHHHHhhhcc
Q 033705 51 GGGWIDAAKFLTGASAVGSLAIPIILRHAHMI 82 (113)
Q Consensus 51 ~~~~~d~~~FlTg~~vvSg~aLPiVL~H~~iI 82 (113)
.|.|+=.+.| .....||+|.|.+.-|-++.
T Consensus 15 ~Nk~rLla~m--~~~fGsgfa~PF~ivRhqLl 44 (46)
T d1v54l_ 15 ENKWRLLAMM--TLFFGSGFAAPFFIVRHQLL 44 (46)
T ss_dssp SSHHHHHHHH--HHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHH--HHHHhccccchHHHHHHHHh
Confidence 4556656555 35568999999988776654
No 2
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=13.34 E-value=90 Score=20.82 Aligned_cols=45 Identities=11% Similarity=0.162 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHhh-hcchhhHHHHHhhhhhhhhhhhhhh
Q 033705 58 AKFLTGASAVGSLAIPIILRHA-HMIETGAMFIEFTSFFIFVCTVMCF 104 (113)
Q Consensus 58 ~~FlTg~~vvSg~aLPiVL~H~-~iI~~~A~~lsl~g~~ii~~Ti~~f 104 (113)
..+.|+...+.|+ +|+.+.+. +--.+..++.++++|++. +++.+.
T Consensus 160 ~i~~t~ltti~gf-~pl~~~~~~g~~~~~~la~~v~~Gll~-s~~~~l 205 (222)
T d1iwga8 160 PILMTSLAFILGV-MPLVISTGAGSGAQNAVGTGVMGGMVT-ATVLAI 205 (222)
T ss_dssp HHHHHHHHHHHHH-HHHHTTCSSSCHHHHHHHHHHHHHHHH-HHTTTT
T ss_pred hhhhhHHHHHHHH-HHHHhccccHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 5688888888888 89988774 333456777888888754 665554
No 3
>d1jo5a_ f.3.1.1 (A:) Light-harvesting complex subunits {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=12.29 E-value=49 Score=18.16 Aligned_cols=25 Identities=16% Similarity=0.264 Sum_probs=19.1
Q ss_pred chhhhH-HHHHHHHHHHHHhHHHHHHHhh
Q 033705 52 GGWIDA-AKFLTGASAVGSLAIPIILRHA 79 (113)
Q Consensus 52 ~~~~d~-~~FlTg~~vvSg~aLPiVL~H~ 79 (113)
+..+|+ +.|++|+.+-.++|+ .||.
T Consensus 14 ~EA~E~H~~~~~g~~~F~~iAv---vAH~ 39 (48)
T d1jo5a_ 14 EQAQELHSVYMSGLWLFSAVAI---VAHL 39 (48)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHH---HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 457888 889999988888774 5564
No 4
>d1lghb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=10.56 E-value=84 Score=16.75 Aligned_cols=25 Identities=32% Similarity=0.203 Sum_probs=19.1
Q ss_pred chhhhH-HHHHHHHHHHHHhHHHHHHHhh
Q 033705 52 GGWIDA-AKFLTGASAVGSLAIPIILRHA 79 (113)
Q Consensus 52 ~~~~d~-~~FlTg~~vvSg~aLPiVL~H~ 79 (113)
+..+|+ +.|++|+.+-.++|. .||-
T Consensus 9 ~EA~EfH~~~~~g~~~F~~iAv---vAHi 34 (43)
T d1lghb_ 9 EEAIAVHDQFKTTFSAFIILAA---VAHV 34 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 357888 889999988888774 5664
No 5
>d1rh1a2 f.1.1.1 (A:313-511) Colicin B C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=8.21 E-value=54 Score=22.88 Aligned_cols=11 Identities=27% Similarity=0.770 Sum_probs=9.1
Q ss_pred ccchHHHHHHH
Q 033705 16 YNNWWPMLSAL 26 (113)
Q Consensus 16 ~~nw~Pl~v~~ 26 (113)
.+||-|+++=+
T Consensus 125 TgNWrPl~vk~ 135 (199)
T d1rh1a2 125 TGNWGPLMLEV 135 (199)
T ss_dssp SSCCHHHHHHH
T ss_pred CCCchhHHHHH
Confidence 68999998765
No 6
>d1q90m_ f.23.25.1 (M:) PetM subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=7.27 E-value=80 Score=15.85 Aligned_cols=9 Identities=11% Similarity=0.169 Sum_probs=5.5
Q ss_pred cHHHHHHHH
Q 033705 2 FSSSILLQI 10 (113)
Q Consensus 2 laiG~lLvI 10 (113)
+++||+|+=
T Consensus 20 laigfvllr 28 (34)
T d1q90m_ 20 LAIGFVLLR 28 (34)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHhhee
Confidence 467776653
No 7
>d1cola_ f.1.1.1 (A:) Colicin A {Escherichia coli [TaxId: 562]}
Probab=6.25 E-value=77 Score=22.02 Aligned_cols=11 Identities=27% Similarity=0.770 Sum_probs=9.1
Q ss_pred ccchHHHHHHH
Q 033705 16 YNNWWPMLSAL 26 (113)
Q Consensus 16 ~~nw~Pl~v~~ 26 (113)
.+||-|+++=+
T Consensus 123 TGnW~Pl~l~~ 133 (197)
T d1cola_ 123 TGNWGPLMLEV 133 (197)
T ss_dssp HCCCHHHHHHH
T ss_pred CCCchHHHHHH
Confidence 68999998765
No 8
>d1wixa_ a.40.3.1 (A:) Hook homolog 1, Hook1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.78 E-value=1e+02 Score=20.08 Aligned_cols=10 Identities=50% Similarity=0.969 Sum_probs=8.6
Q ss_pred HHHHHHHHhh
Q 033705 6 ILLQILACAI 15 (113)
Q Consensus 6 ~lLvILsCAL 15 (113)
++.++|+||+
T Consensus 116 Ll~LiLg~AV 125 (164)
T d1wixa_ 116 LLQLILGCAV 125 (164)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHH
Confidence 5678999999
No 9
>d1ciia1 f.1.1.1 (A:451-624) Colicin Ia {Escherichia coli [TaxId: 562]}
Probab=5.69 E-value=86 Score=21.32 Aligned_cols=11 Identities=27% Similarity=0.761 Sum_probs=9.0
Q ss_pred ccchHHHHHHH
Q 033705 16 YNNWWPMLSAL 26 (113)
Q Consensus 16 ~~nw~Pl~v~~ 26 (113)
.+||-|+++=+
T Consensus 111 TGNW~Pl~l~~ 121 (174)
T d1ciia1 111 TENWRPLFVKT 121 (174)
T ss_dssp STTCHHHHHHH
T ss_pred CCCcHHHHHHH
Confidence 68999998755
No 10
>d1v54k_ f.23.5.1 (K:) Mitochondrial cytochrome c oxidase subunit VIIb {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.69 E-value=2e+02 Score=15.52 Aligned_cols=18 Identities=17% Similarity=0.135 Sum_probs=12.6
Q ss_pred HHhhhhhhhhhhhhhhhh
Q 033705 89 IEFTSFFIFVCTVMCFHR 106 (113)
Q Consensus 89 lsl~g~~ii~~Ti~~f~~ 106 (113)
+.++||..+..++.+|..
T Consensus 11 ~vL~~Ga~fc~avW~yv~ 28 (49)
T d1v54k_ 11 AVLASGATFCVAVWVYMA 28 (49)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred EEEecccchhhhhhhhee
Confidence 456777778877777754
Done!