BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033706
(113 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q1ZXH4|EMC6_DICDI ER membrane protein complex subunit 6 OS=Dictyostelium discoideum
GN=emc6 PE=3 SV=1
Length = 123
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 51/89 (57%)
Query: 23 FNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFS 82
+ E +Q N K + + + +SI+GG IAG++GF+G+ GF+FYF I K +
Sbjct: 27 YEMEYIQRNNKTVSFCQIPISILGGAIAGVIGFSGVYGFLFYFFIYITFCSLFTLKENKN 86
Query: 83 VHSYFDSWNRILLDGFLGGLMSFVLFWTY 111
+H YF + I D GLM ++LFWT+
Sbjct: 87 LHLYFPNPRSIWFDSIGAGLMPYILFWTF 115
>sp|Q3ZCG8|EMC6_BOVIN ER membrane protein complex subunit 6 OS=Bos taurus GN=EMC6 PE=3
SV=1
Length = 110
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 52/84 (61%)
Query: 28 LQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYF 87
++ N V+ Y RT +S + G AGILG TGL GF+FY L + S+ L+ KA+ + YF
Sbjct: 19 VRGNAAVLDYCRTSVSALSGATAGILGLTGLYGFIFYLLASILLSLLLILKARRRWNKYF 78
Query: 88 DSWNRILLDGFLGGLMSFVLFWTY 111
S + G +GGL ++VLFWT+
Sbjct: 79 KSRRPLFTGGLIGGLFTYVLFWTF 102
>sp|Q9CQW0|EMC6_MOUSE ER membrane protein complex subunit 6 OS=Mus musculus GN=Emc6 PE=2
SV=1
Length = 110
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 51/84 (60%)
Query: 28 LQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYF 87
++ N V+ Y RT +S + G AGILG TGL GF+FY L + S+ L+ KA + YF
Sbjct: 19 VRGNAAVLDYCRTSVSALSGATAGILGLTGLYGFIFYLLASVLLSLLLILKAGRRWNKYF 78
Query: 88 DSWNRILLDGFLGGLMSFVLFWTY 111
S + G +GGL ++VLFWT+
Sbjct: 79 KSRRPLFTGGLIGGLFTYVLFWTF 102
>sp|Q9BV81|EMC6_HUMAN ER membrane protein complex subunit 6 OS=Homo sapiens GN=EMC6 PE=1
SV=1
Length = 110
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 51/84 (60%)
Query: 28 LQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYF 87
++ N V+ Y RT +S + G AGILG TGL GF+FY L + S+ L+ KA + YF
Sbjct: 19 VRGNAAVLDYCRTSVSALSGATAGILGLTGLYGFIFYLLASVLLSLLLILKAGRRWNKYF 78
Query: 88 DSWNRILLDGFLGGLMSFVLFWTY 111
S + G +GGL ++VLFWT+
Sbjct: 79 KSRRPLFTGGLIGGLFTYVLFWTF 102
>sp|Q6P0F0|EMC6_DANRE ER membrane protein complex subunit 6 OS=Danio rerio GN=emc6 PE=2
SV=1
Length = 110
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 59/105 (56%), Gaps = 5/105 (4%)
Query: 7 SVAGKKSNDVSNDLQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFL 66
SVA K+ Q + +++ N V+ Y RT +S + G AGILG TGL GFVFYFL
Sbjct: 3 SVAAKREGP-----QFISEVSVRGNGAVLDYCRTSVSALSGATAGILGLTGLYGFVFYFL 57
Query: 67 IMAITSVCLMAKAKFSVHSYFDSWNRILLDGFLGGLMSFVLFWTY 111
+ S+ L+ KA + F S + G +GGL ++VLFWT+
Sbjct: 58 ASFLLSLLLILKAGRRWNKCFKSRRLLFTGGLVGGLFTYVLFWTF 102
>sp|Q6GLC5|EMC6_XENTR ER membrane protein complex subunit 6 OS=Xenopus tropicalis GN=emc6
PE=3 SV=1
Length = 110
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 53/91 (58%)
Query: 21 QIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAK 80
Q + ++ N V+ Y RT +S + G AGILG T L GF+FYFL + S+ L+ K+
Sbjct: 12 QFISEAAVRGNAAVLDYCRTSVSALSGATAGILGLTALYGFIFYFLASFLLSLLLVLKSG 71
Query: 81 FSVHSYFDSWNRILLDGFLGGLMSFVLFWTY 111
+ YF S + G +GGL ++VLFWT+
Sbjct: 72 RKWNKYFKSRKPLFTGGLIGGLFTYVLFWTF 102
>sp|Q68EU8|EMC6_XENLA ER membrane protein complex subunit 6 OS=Xenopus laevis GN=emc6
PE=3 SV=1
Length = 110
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 53/91 (58%)
Query: 21 QIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAK 80
Q + ++ N V+ Y RT +S + G AGILG T L GF+FYFL + S+ L+ K+
Sbjct: 12 QFISEAAVRGNAAVLDYCRTSVSALSGATAGILGLTSLYGFIFYFLASFLLSLLLVLKSG 71
Query: 81 FSVHSYFDSWNRILLDGFLGGLMSFVLFWTY 111
+ YF S + G +GGL ++VLFWT+
Sbjct: 72 RKWNKYFKSRKPLFTGGLVGGLFTYVLFWTF 102
>sp|O59764|YJMB_SCHPO ER membrane protein complex subunit 6 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPCC1020.11c PE=3 SV=2
Length = 108
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 26 ENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMA-KAKFSVH 84
EN+ N +V+ + R S G AGILG T G Y L S L A K + ++
Sbjct: 13 ENVAYNEQVVSFVRNLTSSFFGCAAGILGLTSYEGLALYVLGYFFVSFLLFALKMRGNLT 72
Query: 85 SYFDSWNRILLDGFLGGLMSFVLFWTYF 112
Y+ + + L G S+VL WT F
Sbjct: 73 KYYQPGYKFWIAKILDGAPSYVLTWTLF 100
>sp|Q12431|EMC6_YEAST ER membrane protein complex subunit 6 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=EMC6 PE=1 SV=1
Length = 108
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 45/97 (46%), Gaps = 10/97 (10%)
Query: 21 QIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFL------IMAITSVC 74
QI N+ N K + + + +++ G++AG L + GF+++ + ++ I +C
Sbjct: 10 QINATANVVDNKKRLLFVQDSSALVLGLVAGFLQIESVHGFIWFLILYNLINVIYIVWIC 69
Query: 75 LMAKAKFSVHSYFDSWNRILLDGFLGGLMSFVLFWTY 111
+ KF Y + I + F + FV+ WT+
Sbjct: 70 QLQPGKF----YQSPLHDIFFESFFREITGFVMAWTF 102
>sp|Q9ZD36|Y511_RICPR Uncharacterized protein RP511 OS=Rickettsia prowazekii (strain
Madrid E) GN=RP511 PE=4 SV=1
Length = 950
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 26/42 (61%)
Query: 11 KKSNDVSNDLQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGI 52
K +N++ N L+ N E L SN+ YS++ +++G + +GI
Sbjct: 845 KPNNNIDNFLEHKNLEKLASNIASTLYSKSKYTLVGTITSGI 886
>sp|A1VYQ2|SYP_CAMJJ Proline--tRNA ligase OS=Campylobacter jejuni subsp. jejuni serotype
O:23/36 (strain 81-176) GN=proS PE=3 SV=1
Length = 569
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 17 SNDLQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFY 64
S+DLQ A+N S ++++ S L G++AG +GF GL FY
Sbjct: 303 SDDLQEIKAQNACSALELVDASEEELEK-AGLVAGFIGFVGLKDIDFY 349
>sp|A8FKW6|SYP_CAMJ8 Proline--tRNA ligase OS=Campylobacter jejuni subsp. jejuni serotype
O:6 (strain 81116 / NCTC 11828) GN=proS PE=3 SV=1
Length = 568
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 17 SNDLQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFY 64
S+DLQ A+N S ++++ S L G++AG +GF GL FY
Sbjct: 302 SDDLQEIKAQNACSALELVDASEEELEK-AGLVAGFIGFVGLKDIDFY 348
>sp|Q9PHX1|SYP_CAMJE Proline--tRNA ligase OS=Campylobacter jejuni subsp. jejuni serotype
O:2 (strain NCTC 11168) GN=proS PE=3 SV=1
Length = 569
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 17 SNDLQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFY 64
S+DLQ A+N S ++++ S L G++AG +GF GL FY
Sbjct: 303 SDDLQEVKAQNTCSALELVDASEEELKK-AGLVAGFIGFVGLKDIDFY 349
>sp|Q5HVM3|SYP_CAMJR Proline--tRNA ligase OS=Campylobacter jejuni (strain RM1221)
GN=proS PE=3 SV=1
Length = 569
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 17 SNDLQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFY 64
S+DLQ A+N S ++++ S L G++AG +GF GL FY
Sbjct: 303 SDDLQEVKAQNACSALELVDASEEELEK-AGLVAGFIGFVGLKDIDFY 349
>sp|A7H4J9|SYP_CAMJD Proline--tRNA ligase OS=Campylobacter jejuni subsp. doylei (strain
ATCC BAA-1458 / RM4099 / 269.97) GN=proS PE=3 SV=1
Length = 569
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 17 SNDLQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFY 64
S+DLQ A+N S ++++ S L G++AG +GF GL FY
Sbjct: 303 SDDLQEVKAQNACSALELVDASEEELEK-AGLVAGFIGFVGLKDIDFY 349
>sp|Q9BUV8|CT024_HUMAN Uncharacterized protein C20orf24 OS=Homo sapiens GN=C20orf24 PE=2
SV=1
Length = 137
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 26 ENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMA 69
E+ + VIY+ R ++++ GVI G+L G +G + LI A
Sbjct: 36 EDKDEFLDVIYWFRQIIAVVLGVIWGVLPLRGFLGIAGFCLINA 79
>sp|Q9SAH0|MRS2A_ARATH Magnesium transporter MRS2-10 OS=Arabidopsis thaliana GN=MRS2-10
PE=2 SV=1
Length = 443
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 19 DLQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFV----FYFLIMAITSVC 74
++Q+ N N +++ + TF+ I GV+AGI G + F + ++AIT VC
Sbjct: 364 NIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIFGMNFEIDFFEKPGAFKWVLAITGVC 423
>sp|P91133|UBR1_CAEEL E3 ubiquitin-protein ligase ubr-1 OS=Caenorhabditis elegans
GN=ubr-1 PE=1 SV=2
Length = 2058
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 90 WNRILLDGFLGGLMSFVLF 108
WNR L+DGF+ G F+LF
Sbjct: 591 WNRELIDGFVQGFADFLLF 609
>sp|Q9S9N4|MRS21_ARATH Magnesium transporter MRS2-1 OS=Arabidopsis thaliana GN=MRS2-1 PE=2
SV=1
Length = 442
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 19 DLQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFV----FYFLIMAITSVC 74
++Q+ N N +++ + TF+ I GV+AGI G + F + ++ IT VC
Sbjct: 363 NIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIFGMNFEIDFFNQPGAFRWVLIITGVC 422
Query: 75 LMAKAKFSVHSYFDSWNRIL 94
FS +F + R++
Sbjct: 423 --GFVIFSAFVWFFKYRRLM 440
>sp|Q9CQT9|CT024_MOUSE Uncharacterized protein C20orf24 homolog OS=Mus musculus PE=2 SV=1
Length = 129
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 32 MKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMA-ITSVCLMAKAKFSVHSYFDSW 90
+ VIY+ R ++++ GVI G+L G +G + LI A + + + Y +W
Sbjct: 42 LDVIYWFRQIIALVLGVIWGVLPLRGFLGIAGFCLINAGVLYLYFSNYLQIDEEEYGGTW 101
Query: 91 NRILLDGFLGGLMSFVLFWTYF 112
+ +GF+ F++ W F
Sbjct: 102 E-LTKEGFMTSFALFMVIWIIF 122
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.330 0.142 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,283,353
Number of Sequences: 539616
Number of extensions: 1221014
Number of successful extensions: 5213
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 5197
Number of HSP's gapped (non-prelim): 60
length of query: 113
length of database: 191,569,459
effective HSP length: 81
effective length of query: 32
effective length of database: 147,860,563
effective search space: 4731538016
effective search space used: 4731538016
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 55 (25.8 bits)