Query 033706
Match_columns 113
No_of_seqs 100 out of 237
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 08:33:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033706.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033706hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l2t_A Receptor tyrosine-prote 46.7 14 0.00048 20.8 2.3 14 42-55 10-23 (44)
2 1afo_A Glycophorin A; integral 44.6 12 0.00041 20.7 1.7 14 41-54 12-25 (40)
3 2ks1_B Epidermal growth factor 36.4 9 0.00031 21.5 0.4 12 43-54 12-23 (44)
4 1q90_G Cytochrome B6F complex 31.0 18 0.00062 19.7 1.0 14 43-56 4-17 (37)
5 3e1r_A Centrosomal protein of 22.4 1E+02 0.0035 18.2 3.3 37 20-56 11-47 (58)
6 2l34_A TYRO protein tyrosine k 21.2 74 0.0025 16.5 2.3 22 44-65 8-29 (33)
7 2k9j_B Integrin beta-3; transm 20.8 62 0.0021 17.7 2.0 13 41-53 9-21 (43)
8 1vf5_G Protein PET G; photosyn 18.4 20 0.00069 19.5 -0.4 14 43-56 4-17 (37)
9 3arc_J Photosystem II reaction 15.0 80 0.0027 17.3 1.5 18 46-64 13-30 (40)
10 1rh5_B Preprotein translocase 14.7 2.3E+02 0.0077 17.3 4.7 34 35-73 32-65 (74)
No 1
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=46.67 E-value=14 Score=20.77 Aligned_cols=14 Identities=36% Similarity=0.541 Sum_probs=8.3
Q ss_pred HHHHHHHHHhhhcc
Q 033706 42 LSIIGGVIAGILGF 55 (113)
Q Consensus 42 ~sll~Gi~aGILgL 55 (113)
.++..|++.|++.+
T Consensus 10 ~aIA~gVVgGv~~v 23 (44)
T 2l2t_A 10 PLIAAGVIGGLFIL 23 (44)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred ceEEEeehHHHHHH
Confidence 45666666666543
No 2
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=44.63 E-value=12 Score=20.71 Aligned_cols=14 Identities=50% Similarity=0.819 Sum_probs=11.2
Q ss_pred HHHHHHHHHHhhhc
Q 033706 41 FLSIIGGVIAGILG 54 (113)
Q Consensus 41 ~~sll~Gi~aGILg 54 (113)
++.++.|+.|||+|
T Consensus 12 i~lII~~vmaGiIG 25 (40)
T 1afo_A 12 ITLIIFGVMAGVIG 25 (40)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 46678899999876
No 3
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=36.36 E-value=9 Score=21.53 Aligned_cols=12 Identities=33% Similarity=0.528 Sum_probs=6.4
Q ss_pred HHHHHHHHhhhc
Q 033706 43 SIIGGVIAGILG 54 (113)
Q Consensus 43 sll~Gi~aGILg 54 (113)
++.+|++.|++.
T Consensus 12 ~IA~gVVgGv~~ 23 (44)
T 2ks1_B 12 SIATGMVGALLL 23 (44)
T ss_dssp SSTHHHHHHHHH
T ss_pred eEEeehhHHHHH
Confidence 445566655544
No 4
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=31.00 E-value=18 Score=19.65 Aligned_cols=14 Identities=21% Similarity=0.662 Sum_probs=11.0
Q ss_pred HHHHHHHHhhhccc
Q 033706 43 SIIGGVIAGILGFT 56 (113)
Q Consensus 43 sll~Gi~aGILgLt 56 (113)
.+++|++-|.++.|
T Consensus 4 ~lL~GIVlGlipvt 17 (37)
T 1q90_G 4 PLLCGIVLGLVPVT 17 (37)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhhhhHHHhhHHHH
Confidence 46788888888776
No 5
>3e1r_A Centrosomal protein of 55 kDa; CEP55, ALIX, cytokinesis, ESCRT, alternative splicing, cell cycle, cell division, coiled coil, mitosis; 2.00A {Homo sapiens}
Probab=22.43 E-value=1e+02 Score=18.20 Aligned_cols=37 Identities=19% Similarity=0.342 Sum_probs=30.7
Q ss_pred ccccchHHHhhchhHHHHHHHHHHHHHHHHHhhhccc
Q 033706 20 LQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFT 56 (113)
Q Consensus 20 ~~~~~~~~i~~N~~~i~~~r~~~sll~Gi~aGILgLt 56 (113)
++.--.+++.+|-+=+-|-+|=-+-+=|+.++|+-|+
T Consensus 11 ve~qLkDaleknqqWlvydqqReayV~gll~~i~ele 47 (58)
T 3e1r_A 11 MEIQLKDALEKNQQWLVYDQQREVYVKGLLAKIFELE 47 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3444577999999999999999999999999998765
No 6
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=21.18 E-value=74 Score=16.54 Aligned_cols=22 Identities=32% Similarity=0.727 Sum_probs=12.6
Q ss_pred HHHHHHHhhhcccchhHHHHHH
Q 033706 44 IIGGVIAGILGFTGLMGFVFYF 65 (113)
Q Consensus 44 ll~Gi~aGILgLtg~~Gf~fy~ 65 (113)
.++|++-|-+-.|..-+.++|+
T Consensus 8 aIaGIVvgdi~~t~~i~~~vy~ 29 (33)
T 2l34_A 8 VLAGIVVGDLVLTVLIALAVYF 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEeEeHHHHHHHHHHHHHHhh
Confidence 4566666666555555555554
No 7
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=20.84 E-value=62 Score=17.73 Aligned_cols=13 Identities=31% Similarity=0.534 Sum_probs=9.1
Q ss_pred HHHHHHHHHHhhh
Q 033706 41 FLSIIGGVIAGIL 53 (113)
Q Consensus 41 ~~sll~Gi~aGIL 53 (113)
..+++.|+++|++
T Consensus 9 ~~~Iv~gvi~~iv 21 (43)
T 2k9j_B 9 ILVVLLSVMGAIL 21 (43)
T ss_dssp HHHHHHHHHHHHH
T ss_pred EeehHHHHHHHHH
Confidence 4567777777765
No 8
>1vf5_G Protein PET G; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.26.1 PDB: 2d2c_G* 2e74_G* 2e75_G* 2e76_G* 2zt9_G*
Probab=18.43 E-value=20 Score=19.47 Aligned_cols=14 Identities=21% Similarity=0.539 Sum_probs=7.0
Q ss_pred HHHHHHHHhhhccc
Q 033706 43 SIIGGVIAGILGFT 56 (113)
Q Consensus 43 sll~Gi~aGILgLt 56 (113)
.+++|++-|.++.|
T Consensus 4 plL~GIVlGlipvt 17 (37)
T 1vf5_G 4 PLLDGLVLGLVFAT 17 (37)
T ss_dssp -----CHHHHHHHH
T ss_pred hhhhhHHHhhHHHH
Confidence 46788888887765
No 9
>3arc_J Photosystem II reaction center protein J; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_J* 3a0b_J* 3a0h_J* 2axt_J* 3bz1_J* 3bz2_J* 3kzi_J* 3prq_J* 3prr_J*
Probab=15.01 E-value=80 Score=17.31 Aligned_cols=18 Identities=28% Similarity=0.584 Sum_probs=7.9
Q ss_pred HHHHHhhhcccchhHHHHH
Q 033706 46 GGVIAGILGFTGLMGFVFY 64 (113)
Q Consensus 46 ~Gi~aGILgLtg~~Gf~fy 64 (113)
.|.++|+. .-++.|+.||
T Consensus 13 vgtv~G~~-vi~~~giFfy 30 (40)
T 3arc_J 13 VATVAGMG-VIVIVGLFFY 30 (40)
T ss_dssp HHHHHHHH-HHHHHHHHHH
T ss_pred eeeehhhh-hhheeeEEEe
Confidence 45555532 2344444444
No 10
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=14.69 E-value=2.3e+02 Score=17.29 Aligned_cols=34 Identities=18% Similarity=0.311 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHH
Q 033706 35 IYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSV 73 (113)
Q Consensus 35 i~~~r~~~sll~Gi~aGILgLtg~~Gf~fy~~~~~~~s~ 73 (113)
=++.+...+..+|+ .++ |.-||+.+++...+-+.
T Consensus 32 ~EF~~iak~~~iG~--~im---G~IGfiIkli~ipIn~i 65 (74)
T 1rh5_B 32 DEYLAVAKVTALGI--SLL---GIIGYIIHVPATYIKGI 65 (74)
T ss_dssp HHHHHHHHHHHHHH--HHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--HHH---HHHHHHHHHHHHHHhcc
Confidence 34555555554444 333 56677777766655443
Done!