Query 033706
Match_columns 113
No_of_seqs 100 out of 237
Neff 6.1
Searched_HMMs 13730
Date Mon Mar 25 08:33:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033706.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033706hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1q90g_ f.23.26.1 (G:) PetG su 42.2 4.5 0.00033 19.7 1.0 15 43-57 4-18 (30)
2 d1vf5c3 f.23.23.1 (C:250-286) 41.6 19 0.0014 18.2 3.6 23 58-80 6-28 (37)
3 d1q90a3 f.23.23.1 (A:248-292) 40.6 17 0.0013 19.2 3.4 22 58-79 5-26 (45)
4 d2e74e1 f.23.24.1 (E:1-32) Pet 34.0 12 0.00088 18.0 1.9 14 40-53 10-23 (32)
5 d1n93x_ a.206.1.1 (X:) P40 nuc 18.3 32 0.0023 24.9 2.4 31 21-51 90-123 (343)
6 d1rh1a2 f.1.1.1 (A:313-511) Co 17.2 58 0.0042 22.1 3.5 28 41-68 151-179 (199)
7 d1rh5b_ f.23.28.1 (B:) Preprot 16.7 83 0.006 17.0 4.7 32 36-72 22-53 (56)
8 d1he1a_ a.24.11.1 (A:) ExoS to 10.1 76 0.0055 20.2 2.2 35 17-51 26-64 (135)
9 d1nekc_ f.21.2.2 (C:) Succinat 9.3 1.9E+02 0.014 17.1 4.6 16 96-111 66-81 (129)
10 d2axtj1 f.23.32.1 (J:7-40) Pho 8.5 99 0.0072 15.0 1.8 7 46-52 7-13 (34)
No 1
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=42.24 E-value=4.5 Score=19.67 Aligned_cols=15 Identities=20% Similarity=0.519 Sum_probs=12.0
Q ss_pred HHHHHHHHhhhcccc
Q 033706 43 SIIGGVIAGILGFTG 57 (113)
Q Consensus 43 sll~Gi~aGILgLtg 57 (113)
.+++|++-|+++.|-
T Consensus 4 ~ll~GivlGlipiTl 18 (30)
T d1q90g_ 4 PLLCGIVLGLVPVTI 18 (30)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHhHHHhhHHHHH
Confidence 468899999988773
No 2
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=41.64 E-value=19 Score=18.19 Aligned_cols=23 Identities=13% Similarity=0.333 Sum_probs=16.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhc
Q 033706 58 LMGFVFYFLIMAITSVCLMAKAK 80 (113)
Q Consensus 58 ~~Gf~fy~~~~~~~s~l~~~k~~ 80 (113)
+.|++.|++...+.-.++..|.+
T Consensus 6 v~gl~~F~~~v~laQi~lVlKKK 28 (37)
T d1vf5c3 6 VKWMIAFICLVMLAQLMLILKKK 28 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56888888887777777666543
No 3
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=40.64 E-value=17 Score=19.16 Aligned_cols=22 Identities=27% Similarity=0.581 Sum_probs=16.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHh
Q 033706 58 LMGFVFYFLIMAITSVCLMAKA 79 (113)
Q Consensus 58 ~~Gf~fy~~~~~~~s~l~~~k~ 79 (113)
+.|+++|+++.++.-.++..|.
T Consensus 5 v~gll~F~~~v~laQi~LVLKK 26 (45)
T d1q90a3 5 IQGLLVFFSFVLLTQVLLVLKK 26 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888888777776666643
No 4
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=34.04 E-value=12 Score=18.02 Aligned_cols=14 Identities=29% Similarity=0.759 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHhhh
Q 033706 40 TFLSIIGGVIAGIL 53 (113)
Q Consensus 40 ~~~sll~Gi~aGIL 53 (113)
.++++.+|++-||+
T Consensus 10 vfialffgiavgii 23 (32)
T d2e74e1 10 VFIALFFGIAVGII 23 (32)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhe
Confidence 46788889988874
No 5
>d1n93x_ a.206.1.1 (X:) P40 nucleoprotein {Borna disease virus [TaxId: 12455]}
Probab=18.29 E-value=32 Score=24.91 Aligned_cols=31 Identities=16% Similarity=0.350 Sum_probs=20.8
Q ss_pred cccchHHHhhc---hhHHHHHHHHHHHHHHHHHh
Q 033706 21 QIFNAENLQSN---MKVIYYSRTFLSIIGGVIAG 51 (113)
Q Consensus 21 ~~~~~~~i~~N---~~~i~~~r~~~sll~Gi~aG 51 (113)
..+.......| ++...-.|..++++.|+++|
T Consensus 90 ~f~g~k~~~~~ft~Le~sSil~hCCdLLIGi~ig 123 (343)
T d1n93x_ 90 KFYGEKTTQRDLTELEISSIFSHCCSLLIGVVIG 123 (343)
T ss_dssp CCSCSSCCCCCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhcCccCCCcchHHHHHHHHHHHHHHHHHhhhcc
Confidence 34444444445 34555678889999999987
No 6
>d1rh1a2 f.1.1.1 (A:313-511) Colicin B C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=17.22 E-value=58 Score=22.08 Aligned_cols=28 Identities=21% Similarity=0.311 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhhhccc-chhHHHHHHHHH
Q 033706 41 FLSIIGGVIAGILGFT-GLMGFVFYFLIM 68 (113)
Q Consensus 41 ~~sll~Gi~aGILgLt-g~~Gf~fy~~~~ 68 (113)
+.|.+.|...|++|+. ...|++-.++..
T Consensus 151 ~fs~~~g~~~~~~g~~~t~vgi~giii~~ 179 (199)
T d1rh1a2 151 LFSLTLGSALIAFGLSATVVGFVGVVIAG 179 (199)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHhhhHHHHHHHHHHH
Confidence 4567777788888886 444554433333
No 7
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=16.70 E-value=83 Score=17.00 Aligned_cols=32 Identities=16% Similarity=0.252 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHH
Q 033706 36 YYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITS 72 (113)
Q Consensus 36 ~~~r~~~sll~Gi~aGILgLtg~~Gf~fy~~~~~~~s 72 (113)
++.+...+..+|+. +-|.-||+.|++...+-+
T Consensus 22 Ef~~ia~v~~iG~~-----i~G~IGf~I~li~~~i~~ 53 (56)
T d1rh5b_ 22 EYLAVAKVTALGIS-----LLGIIGYIIHVPATYIKG 53 (56)
T ss_dssp HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhhh
Confidence 45555555555543 345667777766655433
No 8
>d1he1a_ a.24.11.1 (A:) ExoS toxin {Pseudomonas aeruginosa [TaxId: 287]}
Probab=10.14 E-value=76 Score=20.18 Aligned_cols=35 Identities=20% Similarity=0.370 Sum_probs=25.8
Q ss_pred CCcccccchHHHhhchhHHH----HHHHHHHHHHHHHHh
Q 033706 17 SNDLQIFNAENLQSNMKVIY----YSRTFLSIIGGVIAG 51 (113)
Q Consensus 17 ~~~~~~~~~~~i~~N~~~i~----~~r~~~sll~Gi~aG 51 (113)
..+.+.++.|++++|-+.+- =+|+++.-+-|+..|
T Consensus 26 a~qL~~ldae~L~knh~~lAtGnG~LRsl~T~Lqgi~~g 64 (135)
T d1he1a_ 26 ASELATLTPEGLAREHSRLASGDGALRSLSTALAGIRAG 64 (135)
T ss_dssp TGGGGGCCHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHH
T ss_pred hHHHhccCHHHHhhhhHHHhcCCccHHHHHHHhhhhhcc
Confidence 35778899999999966654 367777777777654
No 9
>d1nekc_ f.21.2.2 (C:) Succinate dehydrogenase subunit SdhC {Escherichia coli [TaxId: 562]}
Probab=9.28 E-value=1.9e+02 Score=17.08 Aligned_cols=16 Identities=6% Similarity=0.219 Sum_probs=8.3
Q ss_pred hhhhhhhHHHHhHhhh
Q 033706 96 DGFLGGLMSFVLFWTY 111 (113)
Q Consensus 96 ~g~~~~l~~FvL~Wtl 111 (113)
+.....+.-|.+.|.+
T Consensus 66 ~~~~~~~~~~~~~~~~ 81 (129)
T d1nekc_ 66 GSFFVKFIMWGILTAL 81 (129)
T ss_dssp TSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444555555555544
No 10
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=8.54 E-value=99 Score=14.97 Aligned_cols=7 Identities=29% Similarity=0.563 Sum_probs=3.5
Q ss_pred HHHHHhh
Q 033706 46 GGVIAGI 52 (113)
Q Consensus 46 ~Gi~aGI 52 (113)
.|.++|+
T Consensus 7 v~tv~G~ 13 (34)
T d2axtj1 7 VATVAGM 13 (34)
T ss_dssp HHHHHHH
T ss_pred eeehhhh
Confidence 4455554
Done!