BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>033708
MNEPWNLQALIFLLAIIVRAANRPVEYDSDDELIAPRQQIRQPLINRPTPPATGVPVAGS
LDQRPSRNDAWSTRMREKYGLDTSEFTYNPSESHRFQQVATQPAEERSRCTIM

High Scoring Gene Products

Symbol, full name Information P value
TOM2A
tobamovirus multiplication 2A 		protein from Arabidopsis thaliana 1.7e-41
AT2G20230 protein from Arabidopsis thaliana 0.00016

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  033708
        (113 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2033718 - symbol:TOM2A "tobamovirus multiplica...   440  1.7e-41   1
TAIR|locus:2038997 - symbol:AT2G20230 species:3702 "Arabi...    97  0.00016   1


>TAIR|locus:2033718 [details] [associations]
            symbol:TOM2A "tobamovirus multiplication 2A" species:3702
            "Arabidopsis thaliana" [GO:0005576 "extracellular region"
            evidence=ISM] [GO:0016021 "integral to membrane" evidence=IEA]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0016020 "membrane"
            evidence=ISS] [GO:0046786 "viral replication complex formation and
            maintenance" evidence=IMP] [GO:0005773 "vacuole" evidence=IDA]
            [GO:0009506 "plasmodesma" evidence=IDA] [GO:0005794 "Golgi
            apparatus" evidence=IDA] InterPro:IPR018499 Pfam:PF00335
            GO:GO:0016021 EMBL:CP002684 GO:GO:0009506 GO:GO:0005794
            GO:GO:0005773 GO:GO:0016020 HOGENOM:HOG000029054 GO:GO:0046786
            EMBL:AF334723 EMBL:AF385687 EMBL:AY088560 EMBL:AB085684
            IPI:IPI00522211 RefSeq:NP_001031127.1 RefSeq:NP_564399.1
            RefSeq:NP_973952.1 UniGene:At.15525 IntAct:Q9C5W7 STRING:Q9C5W7
            PRIDE:Q9C5W7 ProMEX:Q9C5W7 EnsemblPlants:AT1G32400.1
            EnsemblPlants:AT1G32400.2 EnsemblPlants:AT1G32400.3 GeneID:840133
            KEGG:ath:AT1G32400 TAIR:At1g32400 InParanoid:Q9C5W7 OMA:TSEFTYN
            PhylomeDB:Q9C5W7 ProtClustDB:CLSN2688198 ArrayExpress:Q9C5W7
            Genevestigator:Q9C5W7 Uniprot:Q9C5W7
        Length = 280

 Score = 440 (159.9 bits), Expect = 1.7e-41, P = 1.7e-41
 Identities = 82/106 (77%), Positives = 91/106 (85%)

Query:     8 QALIFLLAIIVRAANRPVEYDSDDELIAPRQQIRQPLINRPTPPATGVPVAGSLDQRPSR 67
             +AL+FLLA++VRAAN P EYDSDDE +APRQQIRQP INR   P TGVPVA +LDQRPSR
Sbjct:   175 EALLFLLALMVRAANTPAEYDSDDEYLAPRQQIRQPFINRQAAPVTGVPVAPTLDQRPSR 234

Query:    68 NDAWSTRMREKYGLDTSEFTYNPSESHRFQQVATQPAEERSRCTIM 113
             +D WS RMREKYGLDTSEFTYNPSESHRFQQ+  QP EE+ RCTIM
Sbjct:   235 SDPWSARMREKYGLDTSEFTYNPSESHRFQQMPAQPNEEKGRCTIM 280


>TAIR|locus:2038997 [details] [associations]
            symbol:AT2G20230 species:3702 "Arabidopsis thaliana"
            [GO:0016021 "integral to membrane" evidence=IEA] [GO:0005773
            "vacuole" evidence=IDA] [GO:0005774 "vacuolar membrane"
            evidence=IDA] [GO:0009627 "systemic acquired resistance"
            evidence=RCA] [GO:0031347 "regulation of defense response"
            evidence=RCA] InterPro:IPR000301 InterPro:IPR018499 Pfam:PF00335
            PRINTS:PR00259 PROSITE:PS00421 GO:GO:0016021 GO:GO:0005774
            EMBL:CP002685 GenomeReviews:CT485783_GR EMBL:AC006569
            UniGene:At.13955 EMBL:AY054570 EMBL:AY064662 EMBL:AY088475
            IPI:IPI00520899 PIR:F84586 RefSeq:NP_565468.1 UniGene:At.48496
            PaxDb:Q93XY5 PRIDE:Q93XY5 EnsemblPlants:AT2G20230.1 GeneID:816542
            KEGG:ath:AT2G20230 TAIR:At2g20230 eggNOG:NOG310766
            HOGENOM:HOG000029054 InParanoid:Q93XY5 OMA:CKWVGIT PhylomeDB:Q93XY5
            ProtClustDB:CLSN2685757 Genevestigator:Q93XY5 Uniprot:Q93XY5
        Length = 270

 Score = 97 (39.2 bits), Expect = 0.00016, P = 0.00016
 Identities = 32/86 (37%), Positives = 47/86 (54%)

Query:     7 LQALIFLLAIIVRA-ANRPV-EYDSDDELIAPRQQIRQPLINRPTPPATGVPVAGSLDQR 64
             +Q L  LLA+++RA  + P  E D +++   PR +   PL+    P     P AGS    
Sbjct:   193 VQLLSLLLAMVLRAMVSTPKPELDEEEDDENPRSRTWDPLLG---PQGNQAP-AGS---- 244

Query:    65 PSRNDAWSTRMREKYGLDTSEFTYNP 90
              S+ + WS+R+REKYGL+ S    NP
Sbjct:   245 -SKIENWSSRIREKYGLNQSP-PVNP 268


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.131   0.393    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      113       113   0.00091  102 3  11 22  0.48    30
                                                     29  0.44    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  561 (60 KB)
  Total size of DFA:  126 KB (2080 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.70u 0.12s 14.82t   Elapsed:  00:00:01
  Total cpu time:  14.70u 0.12s 14.82t   Elapsed:  00:00:01
  Start:  Tue May 21 00:20:59 2013   End:  Tue May 21 00:21:00 2013

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