BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033708
(113 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7S055|ATG11_NEUCR Autophagy-related protein 11 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=atg-11 PE=3 SV=1
Length = 1300
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 10/79 (12%)
Query: 42 QPLINRPTPPATGVPVAGSLDQRPS-----RNDAWSTRMREKYGLDTSEFTYNPSES--H 94
+ L++R T + P G+L Q PS RND+ S+ +R +D + + E+ H
Sbjct: 452 EDLLHRQTQASR--PNVGNLFQNPSQQVLDRNDSISS-LRNPRAVDDRSRSLDGLETLIH 508
Query: 95 RFQQVATQPAEERSRCTIM 113
R QQ+ T+ ER RC ++
Sbjct: 509 RTQQLETELNTERERCVVL 527
>sp|Q9SVU4|TET20_ARATH Tetraspanin-20 OS=Arabidopsis thaliana GN=At4g28770 PE=2 SV=1
Length = 281
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 10/69 (14%)
Query: 23 RPVEYDSDDELIAPRQQIRQPLINRPTPPATGVPVAGSLDQRPSRNDAWSTRMREKYGLD 82
R E D +D+ P + R L+ P A S D W +R+REKYGL
Sbjct: 222 RQSELDDEDDFENPMSRARDNLLG---------PQANQTSSGSSNIDNWRSRIREKYGLI 272
Query: 83 TSEFTYNPS 91
S+ ++ PS
Sbjct: 273 NSQ-SHTPS 280
>sp|Q93XY5|TET18_ARATH Tetraspanin-18 OS=Arabidopsis thaliana GN=At2g20230 PE=2 SV=1
Length = 270
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 9/49 (18%)
Query: 36 PRQQIRQPLINRPTPPATGVPVAGSLDQRPSRNDAWSTRMREKYGLDTS 84
PR + PL+ P P AGS S+ + WS+R+REKYGL+ S
Sbjct: 224 PRSRTWDPLLG---PQGNQAP-AGS-----SKIENWSSRIREKYGLNQS 263
>sp|Q503I8|NGLY1_DANRE Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase
OS=Danio rerio GN=ngly1 PE=2 SV=1
Length = 644
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 13/68 (19%)
Query: 37 RQQIRQPLI---------NRPTPPATGVPVAGSLDQRPSRNDAWSTRMREKYGLDTSEFT 87
+QQ+ Q L+ P P G ++GSL R +R + ++ +E DT E
Sbjct: 415 KQQLLQRLLVELVEFISPKSPQPGELGGRMSGSLAWRAARGETGASNAKE----DTQENV 470
Query: 88 YNPSESHR 95
+ PSES +
Sbjct: 471 FTPSESEK 478
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.131 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,139,965
Number of Sequences: 539616
Number of extensions: 1683439
Number of successful extensions: 4041
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 4035
Number of HSP's gapped (non-prelim): 15
length of query: 113
length of database: 191,569,459
effective HSP length: 81
effective length of query: 32
effective length of database: 147,860,563
effective search space: 4731538016
effective search space used: 4731538016
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)