Query 033708
Match_columns 113
No_of_seqs 59 out of 61
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 08:36:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033708.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033708hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1kil_E Complexin I snare-compl 44.3 8.9 0.0003 23.9 1.3 10 72-81 40-49 (49)
2 3rk3_E Complexin-1; snare prot 29.8 20 0.0007 23.2 1.3 12 72-83 43-54 (63)
3 3uky_C Nuclear CAP-binding pro 29.6 24 0.00084 20.1 1.4 19 25-43 10-30 (32)
4 1l4a_E Synaphin A; snare, snar 27.9 23 0.00077 23.9 1.3 13 71-83 46-58 (79)
5 3arc_K Photosystem II reaction 18.8 1E+02 0.0035 18.0 2.7 18 6-23 18-35 (37)
6 3j1r_A Archaeal adhesion filam 15.2 1.3E+02 0.0043 16.4 2.3 15 3-17 2-16 (26)
7 1ko6_B Nuclear pore complex pr 14.9 42 0.0014 21.7 0.4 8 78-85 2-9 (64)
8 2wgo_A Ranaspumin-2, RSN-2; cy 13.0 79 0.0027 21.6 1.4 28 69-96 29-57 (98)
9 1r4v_A Hypothetical protein AQ 11.1 2E+02 0.0069 21.7 3.2 21 4-24 132-152 (171)
10 1wwi_A Hypothetical protein TT 10.6 2.2E+02 0.0075 21.0 3.2 21 4-24 108-128 (148)
No 1
>1kil_E Complexin I snare-complex binding region; helix bound to four helix bundle, membrane protein; 2.30A {Rattus norvegicus} SCOP: h.1.15.1
Probab=44.34 E-value=8.9 Score=23.91 Aligned_cols=10 Identities=40% Similarity=0.969 Sum_probs=8.1
Q ss_pred hhHHHHhhCC
Q 033708 72 STRMREKYGL 81 (113)
Q Consensus 72 S~RmREKyGL 81 (113)
.+-||+||||
T Consensus 40 Rq~IRdKY~i 49 (49)
T 1kil_E 40 RQGIRDKYGI 49 (49)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHhcCC
Confidence 4678999997
No 2
>3rk3_E Complexin-1; snare proteins, membrane fusion, membrane protein-exocytosis transport protein complex, membrane protein-exocytosis COMP; 3.50A {Homo sapiens} PDB: 3rl0_g
Probab=29.85 E-value=20 Score=23.25 Aligned_cols=12 Identities=33% Similarity=0.825 Sum_probs=9.4
Q ss_pred hhHHHHhhCCCC
Q 033708 72 STRMREKYGLDT 83 (113)
Q Consensus 72 S~RmREKyGLdt 83 (113)
.+-||+||||--
T Consensus 43 RQ~IRdKY~ikK 54 (63)
T 3rk3_E 43 RQGIRDKYGIKK 54 (63)
T ss_dssp HHHHHHHHTCC-
T ss_pred HHHHHHHhccch
Confidence 567999999975
No 3
>3uky_C Nuclear CAP-binding protein complex subunit 1; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding; 2.35A {Saccharomyces cerevisiae}
Probab=29.62 E-value=24 Score=20.11 Aligned_cols=19 Identities=32% Similarity=0.536 Sum_probs=10.8
Q ss_pred CCCCCcccccc--cccccccC
Q 033708 25 VEYDSDDELIA--PRQQIRQP 43 (113)
Q Consensus 25 ~~YDSDDey~~--~r~~~R~P 43 (113)
.+||.||.|-. +|-+.||.
T Consensus 10 ~dfd~ddgYrDfrPR~pKRQR 30 (32)
T 3uky_C 10 GDFDEDENYRDFRPRMPKRQR 30 (32)
T ss_pred ccCcccccccccccccccccc
Confidence 45888887742 34444443
No 4
>1l4a_E Synaphin A; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=27.93 E-value=23 Score=23.95 Aligned_cols=13 Identities=38% Similarity=0.787 Sum_probs=9.9
Q ss_pred hhhHHHHhhCCCC
Q 033708 71 WSTRMREKYGLDT 83 (113)
Q Consensus 71 WS~RmREKyGLdt 83 (113)
-.+-||+||||--
T Consensus 46 mRq~IRdKY~ikK 58 (79)
T 1l4a_E 46 MRQTIRDKYGLKK 58 (79)
T ss_dssp HHHHHHHHHTCC-
T ss_pred HHHHHHHHhcccc
Confidence 3567999999976
No 5
>3arc_K Photosystem II reaction center protein K; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1izl_K* 1s5l_K* 2axt_K* 3bz1_K* 3bz2_K* 3kzi_K* 3prq_K* 3prr_K* 3a0b_K* 3a0h_K*
Probab=18.78 E-value=1e+02 Score=18.02 Aligned_cols=18 Identities=28% Similarity=0.322 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 033708 6 NLQALIFLLAIIVRAANR 23 (113)
Q Consensus 6 ~~QaLSilLAmiLRAl~~ 23 (113)
++-+|.+|||++-.|..+
T Consensus 18 iIPv~f~lLafvWQAav~ 35 (37)
T 3arc_K 18 VIPVLFLALAFVWQAAVG 35 (37)
T ss_dssp GHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHhhc
Confidence 456789999999998764
No 6
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=15.16 E-value=1.3e+02 Score=16.42 Aligned_cols=15 Identities=27% Similarity=0.430 Sum_probs=11.8
Q ss_pred chhHHHHHHHHHHHH
Q 033708 3 EPWNLQALIFLLAII 17 (113)
Q Consensus 3 ~~~~~QaLSilLAmi 17 (113)
+|-|.-+|.|++|.+
T Consensus 2 spiVA~~lLIviav~ 16 (26)
T 3j1r_A 2 SPVIATLLLILIAVA 16 (26)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHH
Confidence 577888888888764
No 7
>1ko6_B Nuclear pore complex protein NUP98; nucleoporin, autoproteolysis, transferase; 3.00A {Homo sapiens} SCOP: b.119.1.1
Probab=14.92 E-value=42 Score=21.71 Aligned_cols=8 Identities=63% Similarity=1.140 Sum_probs=6.2
Q ss_pred hhCCCCCC
Q 033708 78 KYGLDTSE 85 (113)
Q Consensus 78 KyGLdts~ 85 (113)
||||+-|+
T Consensus 2 KYGL~DSD 9 (64)
T 1ko6_B 2 KYGLQDSD 9 (64)
T ss_pred CcCccccc
Confidence 89997754
No 8
>2wgo_A Ranaspumin-2, RSN-2; cystatin fold, surfactant protein; NMR {Engystomops pustulosus}
Probab=12.98 E-value=79 Score=21.59 Aligned_cols=28 Identities=36% Similarity=0.794 Sum_probs=18.1
Q ss_pred chhhhHHHHhhCCCCCCcc-cCCCccchh
Q 033708 69 DAWSTRMREKYGLDTSEFT-YNPSESHRF 96 (113)
Q Consensus 69 DAWS~RmREKyGLdts~ft-ynp~~~~r~ 96 (113)
|-+.--|.+|||+||.+.. ...|+-.||
T Consensus 29 dkfqddikdkygvdtkdlkilktsedkrf 57 (98)
T 2wgo_A 29 DKFQDDIKDKYGVDTKDLKILKTSEDKRF 57 (98)
T ss_dssp HHSHHHHHHHTCCCTTTCEEEEEEECSSE
T ss_pred HHHHHhhhhhhCCCccceeeeeccCCceE
Confidence 3445678999999996543 334555554
No 9
>1r4v_A Hypothetical protein AQ_328; structural genomics, all-alpha, histon fold, PSI, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.90A {Aquifex aeolicus} SCOP: a.22.1.4
Probab=11.13 E-value=2e+02 Score=21.66 Aligned_cols=21 Identities=14% Similarity=0.211 Sum_probs=19.3
Q ss_pred hhHHHHHHHHHHHHHHHhcCC
Q 033708 4 PWNLQALIFLLAIIVRAANRP 24 (113)
Q Consensus 4 ~~~~QaLSilLAmiLRAl~~~ 24 (113)
|-|+=+|++.||=++|++.+.
T Consensus 132 PeI~GgL~valARv~K~l~Pe 152 (171)
T 1r4v_A 132 RNIMGGLLLMHADVIKKATGE 152 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHhCCC
Confidence 788999999999999999776
No 10
>1wwi_A Hypothetical protein TTHA1479; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.58A {Thermus thermophilus HB8} SCOP: a.22.1.4 PDB: 1wws_A
Probab=10.59 E-value=2.2e+02 Score=20.96 Aligned_cols=21 Identities=19% Similarity=0.232 Sum_probs=19.0
Q ss_pred hhHHHHHHHHHHHHHHHhcCC
Q 033708 4 PWNLQALIFLLAIIVRAANRP 24 (113)
Q Consensus 4 ~~~~QaLSilLAmiLRAl~~~ 24 (113)
|-|+=+|++.||=++|++.+.
T Consensus 108 P~I~GgL~v~lArv~K~l~pe 128 (148)
T 1wwi_A 108 PELAGALVVAYARVLKELDPA 128 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHHhCcc
Confidence 678899999999999999776
Done!