Query 033708
Match_columns 113
No_of_seqs 59 out of 61
Neff 3.6
Searched_HMMs 13730
Date Mon Mar 25 08:36:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033708.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033708hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1q90n_ f.23.27.1 (N:) PetN su 23.6 29 0.0021 18.2 2.4 16 3-18 2-25 (31)
2 d2axtk1 f.23.36.1 (K:10-46) Ph 21.1 40 0.0029 18.4 2.7 18 6-23 18-35 (37)
3 d2g3ra2 b.34.9.1 (A:1538-1603) 16.5 18 0.0013 22.0 0.5 9 73-81 57-65 (66)
4 d1ov2a_ a.13.1.1 (A:) alpha-2- 11.6 42 0.0031 21.1 1.3 13 73-85 66-78 (82)
5 d1wwia1 a.22.1.4 (A:1-148) Hyp 10.9 93 0.0068 21.2 3.1 21 4-24 108-128 (148)
6 d2gkpa1 d.351.1.1 (A:1-164) Hy 10.8 12 0.00086 26.4 -1.9 43 16-83 54-100 (164)
7 d1r4va_ a.22.1.4 (A:) Hypothet 10.7 1E+02 0.0075 21.0 3.2 23 3-25 111-133 (151)
8 d2bv3a4 d.58.11.1 (A:404-478) 10.1 28 0.0021 20.5 0.0 12 72-83 60-71 (75)
9 d2ngra_ c.37.1.8 (A:) CDC42 {H 9.9 44 0.0032 21.1 0.9 12 102-113 180-191 (191)
10 d1zt2b1 a.262.1.1 (B:3-209) DN 9.0 72 0.0052 21.9 1.9 16 7-22 60-75 (207)
No 1
>d1q90n_ f.23.27.1 (N:) PetN subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=23.59 E-value=29 Score=18.22 Aligned_cols=16 Identities=38% Similarity=0.584 Sum_probs=11.0
Q ss_pred chhHHHH--------HHHHHHHHH
Q 033708 3 EPWNLQA--------LIFLLAIIV 18 (113)
Q Consensus 3 ~~~~~Qa--------LSilLAmiL 18 (113)
||.|+|+ +||-|++++
T Consensus 2 ep~iv~~awaa~~atfsfslslvv 25 (31)
T d1q90n_ 2 EPAIVQIGWAATCVMFSFSLSLVV 25 (31)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEhHHHHHHHhheeeEEEEE
Confidence 6777664 677777776
No 2
>d2axtk1 f.23.36.1 (K:10-46) Photosystem II reaction center protein K, PsbK {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=21.12 E-value=40 Score=18.35 Aligned_cols=18 Identities=28% Similarity=0.322 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 033708 6 NLQALIFLLAIIVRAANR 23 (113)
Q Consensus 6 ~~QaLSilLAmiLRAl~~ 23 (113)
++-++.||||++-.|..+
T Consensus 18 iIPv~f~lLafVWQAaV~ 35 (37)
T d2axtk1 18 VIPVLFLALAFVWQAAVG 35 (37)
T ss_dssp GHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHhc
Confidence 466889999999998754
No 3
>d2g3ra2 b.34.9.1 (A:1538-1603) p53-binding protein 1, 53BP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.53 E-value=18 Score=22.01 Aligned_cols=9 Identities=67% Similarity=1.339 Sum_probs=7.5
Q ss_pred hHHHHhhCC
Q 033708 73 TRMREKYGL 81 (113)
Q Consensus 73 ~RmREKyGL 81 (113)
.|+||.|||
T Consensus 57 nrlreqygl 65 (66)
T d2g3ra2 57 NRLREQYGL 65 (66)
T ss_dssp HTTHHHHBC
T ss_pred hhHHHhhCC
Confidence 578999998
No 4
>d1ov2a_ a.13.1.1 (A:) alpha-2-Macroglobulin receptor associated protein (RAP) {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.61 E-value=42 Score=21.12 Aligned_cols=13 Identities=38% Similarity=0.649 Sum_probs=10.0
Q ss_pred hHHHHhhCCCCCC
Q 033708 73 TRMREKYGLDTSE 85 (113)
Q Consensus 73 ~RmREKyGLdts~ 85 (113)
..|-+|||||-..
T Consensus 66 ~~Im~~YgL~g~k 78 (82)
T d1ov2a_ 66 NVILAKYGLDGKK 78 (82)
T ss_dssp HHHHHHHTCCCCC
T ss_pred HHHHHHhCCCccc
Confidence 4688999998743
No 5
>d1wwia1 a.22.1.4 (A:1-148) Hypothetical protein TTHA1479 {Thermus thermophilus [TaxId: 274]}
Probab=10.94 E-value=93 Score=21.21 Aligned_cols=21 Identities=19% Similarity=0.232 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHHHHHHHhcCC
Q 033708 4 PWNLQALIFLLAIIVRAANRP 24 (113)
Q Consensus 4 ~~~~QaLSilLAmiLRAl~~~ 24 (113)
|-|+=+|++.||=++|++.+.
T Consensus 108 P~I~GgL~v~lArv~K~l~pe 128 (148)
T d1wwia1 108 PELAGALVVAYARVLKELDPA 128 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHhHHHHHHHHHHHHhCcc
Confidence 678899999999999999765
No 6
>d2gkpa1 d.351.1.1 (A:1-164) Hypothetical protein NMB0488 {Neisseria meningitidis [TaxId: 487]}
Probab=10.80 E-value=12 Score=26.45 Aligned_cols=43 Identities=19% Similarity=0.463 Sum_probs=29.5
Q ss_pred HHHHHhcCCCC--CCCcc--cccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCchhhhHHHHhhCCCC
Q 033708 16 IIVRAANRPVE--YDSDD--ELIAPRQQIRQPLINRPTPPATGVPVAGSLDQRPSRNDAWSTRMREKYGLDT 83 (113)
Q Consensus 16 miLRAl~~~~~--YDSDD--ey~~~r~~~R~PLLn~q~~~~~~~~~~~~~d~r~~rnDAWS~RmREKyGLdt 83 (113)
.|+.||..++- +|+.+ ||.. .+...-+..+|-.-+.+|||.-|
T Consensus 54 ~i~~aLs~SRti~~d~~E~~dffd-------------------------~~~~~e~y~~Wv~~lm~~ygyKt 100 (164)
T d2gkpa1 54 TVLQALANSRTFVYDSPEDQDFFD-------------------------TEKIRQRYEDWVAKLCGNLGYKT 100 (164)
T ss_dssp HHHHHHHTCCBCCTTSHHHHHHHC-------------------------HHHHHHHHHHHHHHHHHHHTCSC
T ss_pred HHHHHHHhCccccCCchHHHHhhc-------------------------chhhHHHHHHHHHHHHHHhCCcc
Confidence 57778866664 77544 5652 12223456899999999999876
No 7
>d1r4va_ a.22.1.4 (A:) Hypothetical protein Aq_328 {Aquifex aeolicus [TaxId: 63363]}
Probab=10.70 E-value=1e+02 Score=21.04 Aligned_cols=23 Identities=13% Similarity=0.125 Sum_probs=19.9
Q ss_pred chhHHHHHHHHHHHHHHHhcCCC
Q 033708 3 EPWNLQALIFLLAIIVRAANRPV 25 (113)
Q Consensus 3 ~~~~~QaLSilLAmiLRAl~~~~ 25 (113)
-|-|+=+|++.||=++|++.+..
T Consensus 111 lp~I~GgL~v~lArv~K~l~pe~ 133 (151)
T d1r4va_ 111 YRNIMGGLLLMHADVIKKATGER 133 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCS
T ss_pred hHHHHhHHHHHHHHHHHHhCCcc
Confidence 37789999999999999997764
No 8
>d2bv3a4 d.58.11.1 (A:404-478) Elongation factor G (EF-G) {Thermus thermophilus [TaxId: 274]}
Probab=10.10 E-value=28 Score=20.53 Aligned_cols=12 Identities=17% Similarity=0.609 Sum_probs=0.5
Q ss_pred hhHHHHhhCCCC
Q 033708 72 STRMREKYGLDT 83 (113)
Q Consensus 72 S~RmREKyGLdt 83 (113)
-.||+++||++.
T Consensus 60 ~~rL~~~~~vev 71 (75)
T d2bv3a4 60 VDRLKREFKVDA 71 (75)
T ss_dssp C-----------
T ss_pred HHHHHHHHCCce
Confidence 468999999875
No 9
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.95 E-value=44 Score=21.14 Aligned_cols=12 Identities=17% Similarity=0.650 Sum_probs=8.5
Q ss_pred CchhhhcccccC
Q 033708 102 QPAEERSRCTIM 113 (113)
Q Consensus 102 ~~~e~~~rc~im 113 (113)
+.+..+.+|+||
T Consensus 180 ~~~k~~~~C~i~ 191 (191)
T d2ngra_ 180 PEPKKSRRCVLL 191 (191)
T ss_dssp CSTTCCCSCCCC
T ss_pred cCCCCCCCCeEC
Confidence 344567789997
No 10
>d1zt2b1 a.262.1.1 (B:3-209) DNA primase large subunit PriB, N-terminal domain {Sulfolobus solfataricus [TaxId: 2287]}
Probab=9.01 E-value=72 Score=21.89 Aligned_cols=16 Identities=19% Similarity=0.241 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHhc
Q 033708 7 LQALIFLLAIIVRAAN 22 (113)
Q Consensus 7 ~QaLSilLAmiLRAl~ 22 (113)
.|+|||.+|++|=++.
T Consensus 60 ~evlsf~~a~llv~as 75 (207)
T d1zt2b1 60 EPVLVFYTTLLSLAIL 75 (207)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3799999999886664
Done!