Query 033710
Match_columns 113
No_of_seqs 134 out of 1068
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 05:24:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033710.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033710hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5078 Ubiquitin-protein liga 100.0 4.6E-48 1E-52 256.4 11.6 113 1-113 1-114 (153)
2 KOG0417 Ubiquitin-protein liga 100.0 1.8E-46 4E-51 244.4 9.5 108 6-113 2-109 (148)
3 KOG0419 Ubiquitin-protein liga 100.0 1.5E-46 3.3E-51 239.5 8.9 112 1-113 1-112 (152)
4 PTZ00390 ubiquitin-conjugating 100.0 2.9E-43 6.3E-48 235.0 13.5 109 5-113 2-110 (152)
5 PLN00172 ubiquitin conjugating 100.0 1.2E-42 2.7E-47 230.9 13.3 107 7-113 3-109 (147)
6 KOG0425 Ubiquitin-protein liga 100.0 1.3E-40 2.9E-45 217.7 10.5 113 1-113 1-127 (171)
7 KOG0421 Ubiquitin-protein liga 100.0 9.2E-41 2E-45 215.9 7.6 111 3-113 27-137 (175)
8 KOG0418 Ubiquitin-protein liga 100.0 1.5E-39 3.3E-44 218.3 9.1 111 1-113 1-115 (200)
9 PF00179 UQ_con: Ubiquitin-con 100.0 9E-39 1.9E-43 210.7 9.1 105 9-113 1-107 (140)
10 cd00195 UBCc Ubiquitin-conjuga 100.0 5.3E-38 1.1E-42 207.3 11.6 106 8-113 2-108 (141)
11 KOG0426 Ubiquitin-protein liga 100.0 2E-38 4.3E-43 202.6 8.9 110 4-113 3-126 (165)
12 KOG0424 Ubiquitin-protein liga 100.0 4.5E-38 9.8E-43 203.2 9.7 112 1-113 1-119 (158)
13 smart00212 UBCc Ubiquitin-conj 100.0 2.4E-36 5.2E-41 200.2 12.1 106 8-113 1-108 (145)
14 KOG0427 Ubiquitin conjugating 100.0 1.2E-34 2.6E-39 185.0 11.1 107 6-113 16-123 (161)
15 KOG0422 Ubiquitin-protein liga 100.0 4.4E-34 9.5E-39 183.9 8.4 108 5-113 2-111 (153)
16 KOG0894 Ubiquitin-protein liga 100.0 2.3E-33 4.9E-38 192.1 10.5 109 1-113 1-114 (244)
17 KOG0423 Ubiquitin-protein liga 100.0 2.7E-31 5.9E-36 176.7 5.2 108 6-113 11-118 (223)
18 KOG0420 Ubiquitin-protein liga 100.0 2.8E-30 6E-35 171.5 6.9 105 6-113 29-137 (184)
19 KOG0416 Ubiquitin-protein liga 100.0 7.9E-29 1.7E-33 164.3 7.3 102 6-110 4-106 (189)
20 KOG0428 Non-canonical ubiquiti 99.9 1E-25 2.2E-30 157.3 9.7 105 4-113 10-119 (314)
21 KOG0895 Ubiquitin-conjugating 99.8 2.7E-20 5.9E-25 150.1 5.5 107 7-113 853-968 (1101)
22 KOG0895 Ubiquitin-conjugating 99.8 2.5E-18 5.4E-23 138.9 10.0 110 4-113 281-401 (1101)
23 KOG0429 Ubiquitin-conjugating 99.8 3.7E-18 8E-23 117.8 9.4 105 7-112 21-129 (258)
24 KOG0896 Ubiquitin-conjugating 99.6 1.1E-15 2.5E-20 98.2 7.9 111 1-111 1-118 (138)
25 KOG0897 Predicted ubiquitin-co 98.8 2.5E-09 5.4E-14 67.3 2.7 59 54-112 13-73 (122)
26 PF14461 Prok-E2_B: Prokaryoti 98.8 1.3E-08 2.9E-13 66.5 5.3 63 50-112 34-102 (133)
27 PF08694 UFC1: Ubiquitin-fold 98.8 3.8E-09 8.3E-14 69.0 2.2 96 6-107 25-135 (161)
28 PF05743 UEV: UEV domain; Int 98.4 1.3E-06 2.8E-11 56.4 6.7 73 39-112 33-113 (121)
29 KOG3357 Uncharacterized conser 98.1 5.9E-06 1.3E-10 53.5 4.5 95 7-107 29-138 (167)
30 PF05773 RWD: RWD domain; Int 97.0 0.0032 7E-08 39.0 5.8 69 8-77 4-74 (113)
31 KOG2391 Vacuolar sorting prote 96.9 0.0086 1.9E-07 44.7 8.2 68 43-111 57-132 (365)
32 smart00591 RWD domain in RING 96.6 0.024 5.2E-07 34.8 7.6 27 50-76 39-65 (107)
33 PF14457 Prok-E2_A: Prokaryoti 96.3 0.043 9.3E-07 37.1 7.8 58 55-112 56-122 (162)
34 PF14462 Prok-E2_E: Prokaryoti 95.6 0.17 3.7E-06 32.6 8.0 88 23-111 12-116 (122)
35 KOG0309 Conserved WD40 repeat- 91.4 1.5 3.2E-05 36.7 7.8 68 8-76 423-491 (1081)
36 KOG4018 Uncharacterized conser 86.5 3.8 8.2E-05 29.0 6.2 37 37-74 33-71 (215)
37 PF09765 WD-3: WD-repeat regio 85.1 4.7 0.0001 29.8 6.4 83 6-111 100-183 (291)
38 PF06113 BRE: Brain and reprod 82.8 4.9 0.00011 30.3 5.7 67 33-111 52-121 (333)
39 smart00340 HALZ homeobox assoc 78.3 2 4.4E-05 22.5 1.8 14 7-20 21-34 (44)
40 PF14460 Prok-E2_D: Prokaryoti 72.7 1.8 3.8E-05 29.5 0.9 19 75-93 90-111 (175)
41 cd00421 intradiol_dioxygenase 72.3 7.2 0.00016 25.6 3.7 26 50-75 64-90 (146)
42 cd03457 intradiol_dioxygenase_ 68.5 9.5 0.00021 26.4 3.8 26 50-75 85-110 (188)
43 TIGR03737 PRTRC_B PRTRC system 64.3 3.4 7.4E-05 29.5 0.9 18 76-93 132-152 (228)
44 cd03459 3,4-PCD Protocatechuat 60.8 17 0.00036 24.4 3.8 25 51-75 72-101 (158)
45 PF06113 BRE: Brain and reprod 60.4 16 0.00035 27.6 3.9 27 52-79 306-332 (333)
46 PF00845 Gemini_BL1: Geminivir 57.3 27 0.00059 25.4 4.5 49 32-80 100-156 (276)
47 TIGR02423 protocat_alph protoc 51.3 27 0.00058 24.3 3.6 25 50-74 95-124 (193)
48 cd05845 Ig2_L1-CAM_like Second 49.0 53 0.0011 20.0 4.3 26 49-76 16-41 (95)
49 KOG4445 Uncharacterized conser 49.0 25 0.00055 26.4 3.3 25 52-76 45-69 (368)
50 cd03463 3,4-PCD_alpha Protocat 48.7 32 0.00069 23.7 3.7 24 51-74 92-120 (185)
51 PF12065 DUF3545: Protein of u 45.0 16 0.00035 20.5 1.4 12 7-18 36-47 (59)
52 PF14135 DUF4302: Domain of un 44.8 90 0.0019 22.1 5.6 71 5-86 9-103 (235)
53 COG3140 Uncharacterized protei 43.0 40 0.00087 18.7 2.7 26 1-26 28-53 (60)
54 PF00779 BTK: BTK motif; Inte 42.2 9.8 0.00021 18.6 0.3 15 77-91 2-17 (32)
55 smart00107 BTK Bruton's tyrosi 41.9 11 0.00024 19.0 0.4 15 77-91 7-22 (36)
56 KOG3285 Spindle assembly check 41.2 61 0.0013 22.5 4.0 38 6-43 120-157 (203)
57 PF04881 Adeno_GP19K: Adenovir 40.5 30 0.00064 22.7 2.3 21 30-50 43-63 (139)
58 KOG0177 20S proteasome, regula 40.5 12 0.00026 26.0 0.6 24 85-108 135-158 (200)
59 PF03366 YEATS: YEATS family; 39.2 85 0.0018 18.7 5.6 43 35-79 2-44 (84)
60 PF14455 Metal_CEHH: Predicted 39.0 88 0.0019 21.2 4.4 65 8-76 8-76 (177)
61 PF09929 DUF2161: Uncharacteri 39.0 30 0.00065 22.2 2.1 20 5-24 27-46 (118)
62 PRK11700 hypothetical protein; 38.9 1.3E+02 0.0029 20.9 6.7 71 33-109 87-184 (187)
63 PRK15486 hpaC 4-hydroxyphenyla 38.5 20 0.00043 24.3 1.4 68 10-94 6-76 (170)
64 TIGR02439 catechol_proteo cate 35.4 64 0.0014 23.9 3.7 24 51-74 180-221 (285)
65 PF13950 Epimerase_Csub: UDP-g 34.8 28 0.00062 19.4 1.4 15 96-110 37-51 (62)
66 TIGR02296 HpaC 4-hydroxyphenyl 34.3 21 0.00045 23.6 0.9 29 66-94 36-67 (154)
67 cd03461 1,2-HQD Hydroxyquinol 33.9 70 0.0015 23.6 3.7 25 50-74 171-213 (277)
68 KOG1814 Predicted E3 ubiquitin 33.3 45 0.00098 26.1 2.7 21 55-75 77-98 (445)
69 cd03464 3,4-PCD_beta Protocate 32.6 79 0.0017 22.5 3.7 24 51-74 122-152 (220)
70 KOG1047 Bifunctional leukotrie 31.5 51 0.0011 26.9 2.8 29 47-76 248-279 (613)
71 COG0544 Tig FKBP-type peptidyl 31.3 1.5E+02 0.0033 23.3 5.4 15 52-66 209-223 (441)
72 TIGR02438 catachol_actin catec 31.2 84 0.0018 23.2 3.7 25 50-74 183-225 (281)
73 TIGR02422 protocat_beta protoc 31.0 86 0.0019 22.3 3.6 24 51-74 117-147 (220)
74 cd03460 1,2-CTD Catechol 1,2 d 30.1 89 0.0019 23.1 3.7 24 51-74 176-217 (282)
75 COG2819 Predicted hydrolase of 29.4 1E+02 0.0023 22.6 3.9 30 46-75 15-46 (264)
76 TIGR03615 RutF pyrimidine util 28.5 31 0.00067 22.8 1.0 66 12-94 4-72 (156)
77 PF09458 H_lectin: H-type lect 27.9 95 0.0021 17.2 2.9 21 53-74 2-22 (72)
78 TIGR02465 chlorocat_1_2 chloro 27.6 1.1E+02 0.0024 22.1 3.8 25 50-74 149-191 (246)
79 KOG0700 Protein phosphatase 2C 26.9 1.6E+02 0.0034 23.0 4.6 27 59-85 303-329 (390)
80 PF11745 DUF3304: Protein of u 26.7 33 0.00071 21.7 0.8 19 85-103 50-68 (118)
81 PF04314 DUF461: Protein of un 25.5 92 0.002 19.2 2.8 27 36-62 77-103 (110)
82 COG1853 Conserved protein/doma 25.4 49 0.0011 22.2 1.6 29 67-95 45-76 (176)
83 PF09943 DUF2175: Uncharacteri 25.1 79 0.0017 19.8 2.3 20 36-57 2-21 (101)
84 PRK00396 rnpA ribonuclease P; 24.7 1E+02 0.0022 20.0 2.9 21 6-26 65-85 (130)
85 PF06305 DUF1049: Protein of u 24.4 64 0.0014 17.8 1.7 15 6-20 49-63 (68)
86 COG3866 PelB Pectate lyase [Ca 24.1 1.5E+02 0.0033 22.4 4.0 39 36-75 198-240 (345)
87 KOG3696 Aspartyl beta-hydroxyl 22.6 1.8E+02 0.0038 22.1 4.1 24 62-85 303-326 (334)
88 cd03458 Catechol_intradiol_dio 22.5 1.5E+02 0.0033 21.6 3.7 24 51-74 156-197 (256)
89 PF15572 Imm26: Immunity prote 22.3 1.1E+02 0.0023 19.0 2.5 26 44-74 7-32 (96)
90 PF14824 Sirohm_synth_M: Siroh 22.1 75 0.0016 15.3 1.4 13 5-17 17-29 (30)
91 PF14532 Sigma54_activ_2: Sigm 22.0 1.5E+02 0.0033 18.6 3.3 20 2-21 2-21 (138)
92 PF08872 KGK: KGK domain; Int 21.6 1.9E+02 0.0042 18.3 3.6 27 38-67 68-96 (114)
93 PF02970 TBCA: Tubulin binding 21.3 82 0.0018 19.0 1.8 15 5-19 7-21 (90)
94 KOG4278 Protein tyrosine kinas 20.8 1.4E+02 0.0031 25.4 3.6 59 26-90 177-239 (1157)
95 COG2847 Copper(I)-binding prot 20.8 2E+02 0.0042 19.3 3.7 28 36-63 104-131 (151)
96 PF09606 Med15: ARC105 or Med1 20.2 34 0.00075 29.0 0.0 22 54-75 716-737 (799)
97 PRK04390 rnpA ribonuclease P; 20.1 1.3E+02 0.0029 18.9 2.7 20 6-25 63-82 (120)
No 1
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-48 Score=256.37 Aligned_cols=113 Identities=50% Similarity=0.994 Sum_probs=109.4
Q ss_pred CCCCchHHHHHHHHHHHhcCCCCCeEEEeCCC-CCcEEEEEEEcCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEeccCcc
Q 033710 1 MANSNLPRRIIKETQRLLSEPAPGISASPSED-NMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYH 79 (113)
Q Consensus 1 ma~~~~~~RL~~E~~~l~~~~~~gi~~~~~~~-~~~~w~~~i~gp~~t~y~g~~f~~~i~f~~~YP~~pP~v~f~t~i~H 79 (113)
|++..+.+||++|++++++++++++++.|.++ |+++|+++|.||++||||||.|+++|.||++||++||+|+|+++|||
T Consensus 1 ~~s~~a~~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~H 80 (153)
T COG5078 1 MSSPSALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFH 80 (153)
T ss_pred CCchhHHHHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcC
Confidence 67777999999999999999999999999877 99999999999999999999999999999999999999999999999
Q ss_pred ceeeCCCcEEcccCCCCCCccccHHHHHHHhhcC
Q 033710 80 PNIDKLGRICLDILKDKWSPALQIRTVLLRYCEL 113 (113)
Q Consensus 80 Pnv~~~G~icl~~l~~~W~p~~~i~~il~~i~~l 113 (113)
|||+.+|.||+++|.++|+|++++++||++||+|
T Consensus 81 PNV~~~G~vCLdIL~~~WsP~~~l~sILlsl~sl 114 (153)
T COG5078 81 PNVDPSGNVCLDILKDRWSPVYTLETILLSLQSL 114 (153)
T ss_pred CCcCCCCCChhHHHhCCCCccccHHHHHHHHHHH
Confidence 9999999999999999999999999999999975
No 2
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-46 Score=244.41 Aligned_cols=108 Identities=65% Similarity=1.123 Sum_probs=105.0
Q ss_pred hHHHHHHHHHHHhcCCCCCeEEEeCCCCCcEEEEEEEcCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEeccCccceeeCC
Q 033710 6 LPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKL 85 (113)
Q Consensus 6 ~~~RL~~E~~~l~~~~~~gi~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~f~~~YP~~pP~v~f~t~i~HPnv~~~ 85 (113)
+.+||.||++++++++++|+++.++++|+++|+++|.||.+||||||.|++.|.||++||++||+|+|.|+||||||++.
T Consensus 2 a~~RI~kE~~~l~~dp~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~~~ 81 (148)
T KOG0417|consen 2 ASKRIIKELQDLLRDPPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNIDSN 81 (148)
T ss_pred cHHHHHHHHHHHhcCCCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcCcc
Confidence 34699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEcccCCCCCCccccHHHHHHHhhcC
Q 033710 86 GRICLDILKDKWSPALQIRTVLLRYCEL 113 (113)
Q Consensus 86 G~icl~~l~~~W~p~~~i~~il~~i~~l 113 (113)
|.||+|+|+++|+|++++++||++|++|
T Consensus 82 G~IclDILk~~WsPAl~i~~VllsI~sL 109 (148)
T KOG0417|consen 82 GRICLDILKDQWSPALTISKVLLSICSL 109 (148)
T ss_pred ccchHHhhhccCChhhHHHHHHHHHHHH
Confidence 9999999999999999999999999975
No 3
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-46 Score=239.48 Aligned_cols=112 Identities=44% Similarity=0.900 Sum_probs=107.8
Q ss_pred CCCCchHHHHHHHHHHHhcCCCCCeEEEeCCCCCcEEEEEEEcCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEeccCccc
Q 033710 1 MANSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHP 80 (113)
Q Consensus 1 ma~~~~~~RL~~E~~~l~~~~~~gi~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~f~~~YP~~pP~v~f~t~i~HP 80 (113)
|+..+ .|||++|+++++++++.|+++.|.++|+++|.+.|+||.+|||+||+|++.+.|+++||.+||.|+|++.+|||
T Consensus 1 MstpA-rrrLmrDfkrlqedpp~gisa~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHP 79 (152)
T KOG0419|consen 1 MSTPA-RRRLMRDFKRLQEDPPAGISAAPVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHP 79 (152)
T ss_pred CCchH-HHHHHHHHHHhhcCCCCCccCCCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccCC
Confidence 55544 48999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeCCCcEEcccCCCCCCccccHHHHHHHhhcC
Q 033710 81 NIDKLGRICLDILKDKWSPALQIRTVLLRYCEL 113 (113)
Q Consensus 81 nv~~~G~icl~~l~~~W~p~~~i~~il~~i~~l 113 (113)
|||++|.+|+|+|+.+|+|.|++.+||++||+|
T Consensus 80 Nvya~G~iClDiLqNrWsp~Ydva~ILtsiQsl 112 (152)
T KOG0419|consen 80 NVYADGSICLDILQNRWSPTYDVASILTSIQSL 112 (152)
T ss_pred CcCCCCcchHHHHhcCCCCchhHHHHHHHHHHH
Confidence 999999999999999999999999999999986
No 4
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=2.9e-43 Score=234.95 Aligned_cols=109 Identities=69% Similarity=1.187 Sum_probs=105.7
Q ss_pred chHHHHHHHHHHHhcCCCCCeEEEeCCCCCcEEEEEEEcCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEeccCccceeeC
Q 033710 5 NLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDK 84 (113)
Q Consensus 5 ~~~~RL~~E~~~l~~~~~~gi~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~f~~~YP~~pP~v~f~t~i~HPnv~~ 84 (113)
++.|||++|++++++++++|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.
T Consensus 2 ~~~kRl~~E~~~l~~~~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV~~ 81 (152)
T PTZ00390 2 SISKRIEKETQNLANDPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNIDK 81 (152)
T ss_pred cHHHHHHHHHHHHHhCCCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceECC
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEcccCCCCCCccccHHHHHHHhhcC
Q 033710 85 LGRICLDILKDKWSPALQIRTVLLRYCEL 113 (113)
Q Consensus 85 ~G~icl~~l~~~W~p~~~i~~il~~i~~l 113 (113)
+|.||+++|.++|+|++|+++||++|++|
T Consensus 82 ~G~iCl~iL~~~W~p~~ti~~iL~~i~~l 110 (152)
T PTZ00390 82 LGRICLDILKDKWSPALQIRTVLLSIQAL 110 (152)
T ss_pred CCeEECccCcccCCCCCcHHHHHHHHHHH
Confidence 99999999999999999999999999875
No 5
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=1.2e-42 Score=230.89 Aligned_cols=107 Identities=51% Similarity=0.979 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHhcCCCCCeEEEeCCCCCcEEEEEEEcCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEeccCccceeeCCC
Q 033710 7 PRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLG 86 (113)
Q Consensus 7 ~~RL~~E~~~l~~~~~~gi~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~f~~~YP~~pP~v~f~t~i~HPnv~~~G 86 (113)
.+||++|++++++++++|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+++||||+.+|
T Consensus 3 ~~Rl~kE~~~l~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~~G 82 (147)
T PLN00172 3 TKRIQKEHKDLLKDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINSNG 82 (147)
T ss_pred HHHHHHHHHHHHhCCCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceECCCC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEcccCCCCCCccccHHHHHHHhhcC
Q 033710 87 RICLDILKDKWSPALQIRTVLLRYCEL 113 (113)
Q Consensus 87 ~icl~~l~~~W~p~~~i~~il~~i~~l 113 (113)
.||+++|.++|+|++++++||++|++|
T Consensus 83 ~iCl~il~~~W~p~~ti~~il~~i~~l 109 (147)
T PLN00172 83 SICLDILRDQWSPALTVSKVLLSISSL 109 (147)
T ss_pred EEEcccCcCCCCCcCcHHHHHHHHHHH
Confidence 999999999999999999999999875
No 6
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-40 Score=217.69 Aligned_cols=113 Identities=33% Similarity=0.742 Sum_probs=107.0
Q ss_pred CCCCchHHHHHHHHHHHhcCCCCCeEEEeC-CCCCcEEEEEEEcCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEeccCcc
Q 033710 1 MANSNLPRRIIKETQRLLSEPAPGISASPS-EDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYH 79 (113)
Q Consensus 1 ma~~~~~~RL~~E~~~l~~~~~~gi~~~~~-~~~~~~w~~~i~gp~~t~y~g~~f~~~i~f~~~YP~~pP~v~f~t~i~H 79 (113)
|++.++..-|+++|++|++++.+|+.+... ++|+++|.|.|+||++|+||||.|+..+.||.+||.+||+++|++.+||
T Consensus 1 m~~~~a~~ll~~qlk~L~~~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwH 80 (171)
T KOG0425|consen 1 MTSSQASLLLLKQLKELQEEPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWH 80 (171)
T ss_pred CccchhHHHHHHHHHHHhcCCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcC
Confidence 788888889999999999999999999875 5699999999999999999999999999999999999999999999999
Q ss_pred ceeeCCCcEEcccCC-------------CCCCccccHHHHHHHhhcC
Q 033710 80 PNIDKLGRICLDILK-------------DKWSPALQIRTVLLRYCEL 113 (113)
Q Consensus 80 Pnv~~~G~icl~~l~-------------~~W~p~~~i~~il~~i~~l 113 (113)
||||++|.+|+++|- ++|+|.+|+++||++|++|
T Consensus 81 PNvy~~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIllSiIsm 127 (171)
T KOG0425|consen 81 PNVYEDGDVCISILHPPGDDPSGYELPSERWLPVQTVETILLSIISM 127 (171)
T ss_pred CCcCCCCCEEEEeecCCCCCcccCCChhhccCCccchhHhHHHHHHH
Confidence 999999999999993 5699999999999999886
No 7
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.2e-41 Score=215.94 Aligned_cols=111 Identities=44% Similarity=0.781 Sum_probs=108.2
Q ss_pred CCchHHHHHHHHHHHhcCCCCCeEEEeCCCCCcEEEEEEEcCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEeccCcccee
Q 033710 3 NSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNI 82 (113)
Q Consensus 3 ~~~~~~RL~~E~~~l~~~~~~gi~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~f~~~YP~~pP~v~f~t~i~HPnv 82 (113)
+++..|||++||..|+....+||++.|+++|++.|..+|.||.+|+|+|..|++.+.||.+||++||.|+|.|+.|||||
T Consensus 27 ~~~V~KRLq~ELm~Lmms~~~gISAFP~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HPNV 106 (175)
T KOG0421|consen 27 GHSVTKRLQSELMGLMMSNTPGISAFPESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPNV 106 (175)
T ss_pred CchHHHHHHHHHHHHHhcCCCCcccCcCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCCCc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCcEEcccCCCCCCccccHHHHHHHhhcC
Q 033710 83 DKLGRICLDILKDKWSPALQIRTVLLRYCEL 113 (113)
Q Consensus 83 ~~~G~icl~~l~~~W~p~~~i~~il~~i~~l 113 (113)
+-.|.||+|+|++.|+..|.+++||++||||
T Consensus 107 D~~GnIcLDILkdKWSa~YdVrTILLSiQSL 137 (175)
T KOG0421|consen 107 DLSGNICLDILKDKWSAVYDVRTILLSIQSL 137 (175)
T ss_pred cccccchHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 9999999999999999999999999999986
No 8
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-39 Score=218.29 Aligned_cols=111 Identities=46% Similarity=0.907 Sum_probs=106.5
Q ss_pred CCCCchHHHHHHHHHHHhcCC---CCCeEEEeCCCCCcEEEEEEEcCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEeccC
Q 033710 1 MANSNLPRRIIKETQRLLSEP---APGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKI 77 (113)
Q Consensus 1 ma~~~~~~RL~~E~~~l~~~~---~~gi~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~f~~~YP~~pP~v~f~t~i 77 (113)
|++ +.+||++|++++.+++ ..||.++..++|+.+..+.|.||++||||||.|.++|.+|++||++||+|+|.|+|
T Consensus 1 m~~--~~~ri~~e~k~v~~~~eisq~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkI 78 (200)
T KOG0418|consen 1 MSN--AFKRINREQKEVLDDPEISQAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKI 78 (200)
T ss_pred Ccc--HHHHHHHHHHHhccChhhhhcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeee
Confidence 677 7799999999999988 57999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeeC-CCcEEcccCCCCCCccccHHHHHHHhhcC
Q 033710 78 YHPNIDK-LGRICLDILKDKWSPALQIRTVLLRYCEL 113 (113)
Q Consensus 78 ~HPnv~~-~G~icl~~l~~~W~p~~~i~~il~~i~~l 113 (113)
|||||++ +|.||+|+|.+.|.+++|+.++|++||+|
T Consensus 79 wHPnVSs~tGaICLDilkd~Wa~slTlrtvLislQal 115 (200)
T KOG0418|consen 79 WHPNVSSQTGAICLDILKDQWAASLTLRTVLISLQAL 115 (200)
T ss_pred ecCCCCcccccchhhhhhcccchhhhHHHHHHHHHHH
Confidence 9999997 99999999999999999999999999975
No 9
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=100.00 E-value=9e-39 Score=210.66 Aligned_cols=105 Identities=53% Similarity=1.022 Sum_probs=96.0
Q ss_pred HHHHHHHHHhcCCCCCeEEEeCCC-CCcEEEEEEEcCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEeccCccceeeCCCc
Q 033710 9 RIIKETQRLLSEPAPGISASPSED-NMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGR 87 (113)
Q Consensus 9 RL~~E~~~l~~~~~~gi~~~~~~~-~~~~w~~~i~gp~~t~y~g~~f~~~i~f~~~YP~~pP~v~f~t~i~HPnv~~~G~ 87 (113)
||++|+++++++++.|+.+.+.++ |+++|+++|.||++|+|+||.|+++|.||++||++||+|+|.|+++||||+.+|.
T Consensus 1 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~~~G~ 80 (140)
T PF00179_consen 1 RLQKELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNIDENGR 80 (140)
T ss_dssp HHHHHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB-TTSB
T ss_pred CHHHHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCccceeccccccccccccccccccccccccccccccccccccc
Confidence 899999999999999999999876 9999999999999999999999999999999999999999999999999999999
Q ss_pred EEcccCCC-CCCccccHHHHHHHhhcC
Q 033710 88 ICLDILKD-KWSPALQIRTVLLRYCEL 113 (113)
Q Consensus 88 icl~~l~~-~W~p~~~i~~il~~i~~l 113 (113)
+|+++|.. .|+|++++.+||.+|++|
T Consensus 81 icl~~l~~~~W~p~~~i~~il~~i~~l 107 (140)
T PF00179_consen 81 ICLDILNPESWSPSYTIESILLSIQSL 107 (140)
T ss_dssp BGHGGGTTTTC-TTSHHHHHHHHHHHH
T ss_pred chhhhhhcccCCcccccccHHHHHHHH
Confidence 99999974 599999999999999874
No 10
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=100.00 E-value=5.3e-38 Score=207.27 Aligned_cols=106 Identities=54% Similarity=1.007 Sum_probs=102.8
Q ss_pred HHHHHHHHHHhcCCCCCeEEEeCCCCCcEEEEEEEcCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEeccCccceeeCCCc
Q 033710 8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGR 87 (113)
Q Consensus 8 ~RL~~E~~~l~~~~~~gi~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~f~~~YP~~pP~v~f~t~i~HPnv~~~G~ 87 (113)
|||++|++++++++.+|+++.+.++|+++|+++|.||++|+|+||.|++++.||++||++||.|+|.++++||||+.+|.
T Consensus 2 ~Rl~~E~~~l~~~~~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~~~G~ 81 (141)
T cd00195 2 KRLQKELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVDENGK 81 (141)
T ss_pred chHHHHHHHHHhCCCCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCCCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcccCCCC-CCccccHHHHHHHhhcC
Q 033710 88 ICLDILKDK-WSPALQIRTVLLRYCEL 113 (113)
Q Consensus 88 icl~~l~~~-W~p~~~i~~il~~i~~l 113 (113)
+|++++..+ |+|++++++||.+|+++
T Consensus 82 icl~~l~~~~W~p~~~l~~il~~i~~~ 108 (141)
T cd00195 82 ICLSILKTHGWSPAYTLRTVLLSLQSL 108 (141)
T ss_pred CchhhcCCCCcCCcCcHHHHHHHHHHH
Confidence 999999876 99999999999999864
No 11
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-38 Score=202.60 Aligned_cols=110 Identities=37% Similarity=0.791 Sum_probs=103.9
Q ss_pred CchHHHHHHHHHHHhcCCCCCeEEEeC-CCCCcEEEEEEEcCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEeccCcccee
Q 033710 4 SNLPRRIIKETQRLLSEPAPGISASPS-EDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNI 82 (113)
Q Consensus 4 ~~~~~RL~~E~~~l~~~~~~gi~~~~~-~~~~~~w~~~i~gp~~t~y~g~~f~~~i~f~~~YP~~pP~v~f~t~i~HPnv 82 (113)
..+.|||++|+++|-.++++||.+.|. ++|+++|.+.|.||++|+|+||.|..++.||.|||.+||+++|...+|||||
T Consensus 3 ~~AlkRLm~EykqLt~~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHPNi 82 (165)
T KOG0426|consen 3 GTALKRLMAEYKQLTLNPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHPNI 82 (165)
T ss_pred hhHHHHHHHHHHHHccCCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccccCcc
Confidence 356799999999999999999999985 7899999999999999999999999999999999999999999999999999
Q ss_pred eCCCcEEcccCC-------------CCCCccccHHHHHHHhhcC
Q 033710 83 DKLGRICLDILK-------------DKWSPALQIRTVLLRYCEL 113 (113)
Q Consensus 83 ~~~G~icl~~l~-------------~~W~p~~~i~~il~~i~~l 113 (113)
|+||++|+++|. ++|+|..+++.||+++.||
T Consensus 83 y~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLSV~SM 126 (165)
T KOG0426|consen 83 YPDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLSVVSM 126 (165)
T ss_pred cCCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHHHHHH
Confidence 999999999983 5799999999999998775
No 12
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-38 Score=203.21 Aligned_cols=112 Identities=32% Similarity=0.697 Sum_probs=103.6
Q ss_pred CCCCchHHHHHHHHHHHhcCCCCCeEEEeCC-----CCCcEEEEEEEcCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEec
Q 033710 1 MANSNLPRRIIKETQRLLSEPAPGISASPSE-----DNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLT 75 (113)
Q Consensus 1 ma~~~~~~RL~~E~~~l~~~~~~gi~~~~~~-----~~~~~w~~~i~gp~~t~y~g~~f~~~i~f~~~YP~~pP~v~f~t 75 (113)
|++. +..||++|-+.+.++.+-|+++.|.. .|++.|+|.|.|+++|+||||.|++++.|+++||.+||+++|.+
T Consensus 1 ~s~~-~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~ 79 (158)
T KOG0424|consen 1 MSGI-ALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKP 79 (158)
T ss_pred Ccch-HHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCC
Confidence 4444 46899999999999999999998842 47999999999999999999999999999999999999999999
Q ss_pred cCccceeeCCCcEEcccCCCC--CCccccHHHHHHHhhcC
Q 033710 76 KIYHPNIDKLGRICLDILKDK--WSPALQIRTVLLRYCEL 113 (113)
Q Consensus 76 ~i~HPnv~~~G~icl~~l~~~--W~p~~~i~~il~~i~~l 113 (113)
++||||||++|.||+++|.++ |+|+.||.+||+.||.|
T Consensus 80 pl~HPNVypsgtVcLsiL~e~~~W~paitikqiL~gIqdL 119 (158)
T KOG0424|consen 80 PLFHPNVYPSGTVCLSILNEEKDWRPAITIKQILLGIQDL 119 (158)
T ss_pred CCcCCCcCCCCcEehhhhccccCCCchhhHHHHHHHHHHH
Confidence 999999999999999999755 99999999999999975
No 13
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=100.00 E-value=2.4e-36 Score=200.18 Aligned_cols=106 Identities=54% Similarity=1.038 Sum_probs=101.8
Q ss_pred HHHHHHHHHHhcCCCCCeEEEeCCC-CCcEEEEEEEcCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEeccCccceeeCCC
Q 033710 8 RRIIKETQRLLSEPAPGISASPSED-NMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLG 86 (113)
Q Consensus 8 ~RL~~E~~~l~~~~~~gi~~~~~~~-~~~~w~~~i~gp~~t~y~g~~f~~~i~f~~~YP~~pP~v~f~t~i~HPnv~~~G 86 (113)
+||++|++++++++++|+.+.+.++ |+++|+++|.||++|+|+||.|+++|.||++||.+||+|+|.++++||||+++|
T Consensus 1 ~Rl~~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~~G 80 (145)
T smart00212 1 KRLLKELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDSSG 80 (145)
T ss_pred ChHHHHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECCCC
Confidence 5999999999999999999998765 999999999999999999999999999999999999999999999999999999
Q ss_pred cEEcccCC-CCCCccccHHHHHHHhhcC
Q 033710 87 RICLDILK-DKWSPALQIRTVLLRYCEL 113 (113)
Q Consensus 87 ~icl~~l~-~~W~p~~~i~~il~~i~~l 113 (113)
.+|++.|. ++|+|+++++++|.+|+++
T Consensus 81 ~icl~~l~~~~W~p~~~l~~il~~i~~~ 108 (145)
T smart00212 81 EICLDILKQEKWSPATTLETVLLSIQSL 108 (145)
T ss_pred CEehhhcCCCCCCCCCcHHHHHHHHHHH
Confidence 99999998 8999999999999999864
No 14
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-34 Score=184.96 Aligned_cols=107 Identities=33% Similarity=0.655 Sum_probs=102.6
Q ss_pred hHHHHHHHHHHHhcCCCCCeEEEeCCCCCcEEEEEEEcCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEeccC-ccceeeC
Q 033710 6 LPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKI-YHPNIDK 84 (113)
Q Consensus 6 ~~~RL~~E~~~l~~~~~~gi~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~f~~~YP~~pP~v~f~t~i-~HPnv~~ 84 (113)
+.+||+|||.+++.+++.|+... ..+|+..|.+-+.|.+||.|+|.+|.+.+.||+.||++.|.|.|+.++ .||+||+
T Consensus 16 at~RLqKEl~e~q~~pP~G~~~~-v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~HPHiYS 94 (161)
T KOG0427|consen 16 ATNRLQKELSEWQNNPPTGFKHR-VTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPLHPHIYS 94 (161)
T ss_pred HHHHHHHHHHHHhcCCCCcceee-cccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCCCCceec
Confidence 57899999999999999999887 778999999999999999999999999999999999999999999986 7999999
Q ss_pred CCcEEcccCCCCCCccccHHHHHHHhhcC
Q 033710 85 LGRICLDILKDKWSPALQIRTVLLRYCEL 113 (113)
Q Consensus 85 ~G~icl~~l~~~W~p~~~i~~il~~i~~l 113 (113)
||.||+++|.+.|+|++++.+|.++|.+|
T Consensus 95 NGHICL~iL~d~WsPAmsv~SvClSIlSM 123 (161)
T KOG0427|consen 95 NGHICLDILYDSWSPAMSVQSVCLSILSM 123 (161)
T ss_pred CCeEEEEeecccCCcchhhHHHHHHHHHH
Confidence 99999999999999999999999999875
No 15
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-34 Score=183.86 Aligned_cols=108 Identities=37% Similarity=0.734 Sum_probs=99.8
Q ss_pred chHHHHHHHHHHHhcCCCCCeE-EEeCCCCCcEEEEEEEcCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEeccCccceee
Q 033710 5 NLPRRIIKETQRLLSEPAPGIS-ASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNID 83 (113)
Q Consensus 5 ~~~~RL~~E~~~l~~~~~~gi~-~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~f~~~YP~~pP~v~f~t~i~HPnv~ 83 (113)
.+.|||+||+.+|++++...+. +..+++|++.|.+.|. |++.||..|.|+++|.||.+|||+||+|.|.|.||||||+
T Consensus 2 ~a~~Rl~kEL~dl~~~~~~~~rn~~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVD 80 (153)
T KOG0422|consen 2 AAPRRLRKELADLQKNKMKFFRNIEVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVD 80 (153)
T ss_pred chhHHHHHHHHHHHhccHHHHhhhhcccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCC
Confidence 4679999999999999887554 5668899999999999 8999999999999999999999999999999999999999
Q ss_pred CCCcEEcccC-CCCCCccccHHHHHHHhhcC
Q 033710 84 KLGRICLDIL-KDKWSPALQIRTVLLRYCEL 113 (113)
Q Consensus 84 ~~G~icl~~l-~~~W~p~~~i~~il~~i~~l 113 (113)
+.|.+|+.++ .++|.|+.+.++||++|.+|
T Consensus 81 e~gqvClPiis~EnWkP~T~teqVlqaLi~l 111 (153)
T KOG0422|consen 81 EKGQVCLPIISAENWKPATRTEQVLQALIAL 111 (153)
T ss_pred CCCceeeeeeecccccCcccHHHHHHHHHHH
Confidence 9999999999 68999999999999988753
No 16
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-33 Score=192.12 Aligned_cols=109 Identities=33% Similarity=0.692 Sum_probs=101.6
Q ss_pred CCCCchHHHHHHHHHHHhcCCCCCeEEEeCCCCCcEEEEEEEcCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEeccCccc
Q 033710 1 MANSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHP 80 (113)
Q Consensus 1 ma~~~~~~RL~~E~~~l~~~~~~gi~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~f~~~YP~~pP~v~f~t~i~HP 80 (113)
||+.++.|||+||++.|.++|.++|.+.|.++|+.+||.+|.||++|||+||.|+.++.||.+||++||.|++.| |
T Consensus 1 ma~k~a~kRl~keY~~l~k~Pv~~i~A~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiT----P 76 (244)
T KOG0894|consen 1 MASKAAVKRLQKEYRALCKDPVPYIVARPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMIT----P 76 (244)
T ss_pred CcchHHHHHHHHHHHHHHhCCchhhccCCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEEC----C
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999999 5
Q ss_pred e--eeCCCcEEcccCC---CCCCccccHHHHHHHhhcC
Q 033710 81 N--IDKLGRICLDILK---DKWSPALQIRTVLLRYCEL 113 (113)
Q Consensus 81 n--v~~~G~icl~~l~---~~W~p~~~i~~il~~i~~l 113 (113)
| +-.+-++|+++.+ +.|+|++++.+||..|.|+
T Consensus 77 NGRFktntRLCLSiSDfHPdsWNP~WsVStILtGLlSF 114 (244)
T KOG0894|consen 77 NGRFKTNTRLCLSISDFHPDSWNPGWSVSTILTGLLSF 114 (244)
T ss_pred CCceecCceEEEeccccCcCcCCCcccHHHHHHHHHHH
Confidence 5 2235689998774 8999999999999998764
No 17
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.7e-31 Score=176.74 Aligned_cols=108 Identities=38% Similarity=0.733 Sum_probs=104.2
Q ss_pred hHHHHHHHHHHHhcCCCCCeEEEeCCCCCcEEEEEEEcCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEeccCccceeeCC
Q 033710 6 LPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKL 85 (113)
Q Consensus 6 ~~~RL~~E~~~l~~~~~~gi~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~f~~~YP~~pP~v~f~t~i~HPnv~~~ 85 (113)
..|.|.+|++.+...|+.||.|.+.++|+...++.|.||.+|||++|.|++.+.+..|||.+||+-+|.|+||||||..+
T Consensus 11 vik~~~kEl~~l~~~PPdGIKV~~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPNVaaN 90 (223)
T KOG0423|consen 11 VIKQLAKELKSLDESPPDGIKVVVNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPNVAAN 90 (223)
T ss_pred HHHHHHHHHHhcccCCCCceEEecChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCCcccC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEcccCCCCCCccccHHHHHHHhhcC
Q 033710 86 GRICLDILKDKWSPALQIRTVLLRYCEL 113 (113)
Q Consensus 86 G~icl~~l~~~W~p~~~i~~il~~i~~l 113 (113)
|.||++.|..+|+|..+|..||+.|..|
T Consensus 91 GEICVNtLKkDW~p~LGirHvLltikCL 118 (223)
T KOG0423|consen 91 GEICVNTLKKDWNPSLGIRHVLLTIKCL 118 (223)
T ss_pred ceehhhhhhcccCcccchhhHhhhhhee
Confidence 9999999999999999999999987643
No 18
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.8e-30 Score=171.49 Aligned_cols=105 Identities=37% Similarity=0.734 Sum_probs=88.8
Q ss_pred hHHHHHHHHHHHhcCCCCCeEEE--eCCCCCc--EEEEEEEcCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEeccCccce
Q 033710 6 LPRRIIKETQRLLSEPAPGISAS--PSEDNMR--YFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPN 81 (113)
Q Consensus 6 ~~~RL~~E~~~l~~~~~~gi~~~--~~~~~~~--~w~~~i~gp~~t~y~g~~f~~~i~f~~~YP~~pP~v~f~t~i~HPn 81 (113)
+.-||++|..++ +.+++++.. ...++.+ +++++|. |+++.|+||.|.|.+.+|+.||++||+|++.|++||||
T Consensus 29 a~lrl~~di~el--nLp~t~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~HPN 105 (184)
T KOG0420|consen 29 ALLRLKKDILEL--NLPPTCSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVYHPN 105 (184)
T ss_pred HHHHHHhhhhhc--cCCCccccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeeccccCC
Confidence 344666666665 555666532 2234443 5999998 99999999999999999999999999999999999999
Q ss_pred eeCCCcEEcccCCCCCCccccHHHHHHHhhcC
Q 033710 82 IDKLGRICLDILKDKWSPALQIRTVLLRYCEL 113 (113)
Q Consensus 82 v~~~G~icl~~l~~~W~p~~~i~~il~~i~~l 113 (113)
|+.+|.||+++|+++|+|+.++.+|+..|++|
T Consensus 106 Id~~GnVCLnILRedW~P~lnL~sIi~GL~~L 137 (184)
T KOG0420|consen 106 IDLDGNVCLNILREDWRPVLNLNSIIYGLQFL 137 (184)
T ss_pred cCCcchHHHHHHHhcCccccchHHHHHHHHHH
Confidence 99999999999999999999999999999864
No 19
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=7.9e-29 Score=164.34 Aligned_cols=102 Identities=38% Similarity=0.809 Sum_probs=92.8
Q ss_pred hHHHHHHHHHHHhcCCCCCeEEEeCCCCCcEEEEEEEcCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEeccCccceeeC-
Q 033710 6 LPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDK- 84 (113)
Q Consensus 6 ~~~RL~~E~~~l~~~~~~gi~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~f~~~YP~~pP~v~f~t~i~HPnv~~- 84 (113)
..||+-.|...|... +-.|...++++.+++|.+.||.++|||||.+++++.+|++||++.|.|.|+++||||||+.
T Consensus 4 ~~rRid~Dv~KL~~s---~yeV~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNIDe~ 80 (189)
T KOG0416|consen 4 GKRRIDTDVMKLLMS---DYEVTIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNIDEA 80 (189)
T ss_pred cccchhhHHHHHHhc---CCeEEEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCchhc
Confidence 457999999888764 4467778899999999999999999999999999999999999999999999999999996
Q ss_pred CCcEEcccCCCCCCccccHHHHHHHh
Q 033710 85 LGRICLDILKDKWSPALQIRTVLLRY 110 (113)
Q Consensus 85 ~G~icl~~l~~~W~p~~~i~~il~~i 110 (113)
+|.||++.+++.|+|.+.+..|+..+
T Consensus 81 SGsVCLDViNQtWSp~yDL~NIfetf 106 (189)
T KOG0416|consen 81 SGSVCLDVINQTWSPLYDLVNIFETF 106 (189)
T ss_pred cCccHHHHHhhhhhHHHHHHHHHHHH
Confidence 99999999999999999988887543
No 20
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1e-25 Score=157.35 Aligned_cols=105 Identities=35% Similarity=0.710 Sum_probs=94.9
Q ss_pred CchHHHHHHHHHHHhcCCCCCeEEEeCCCCCcEEEEEEEcCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEeccCccce--
Q 033710 4 SNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPN-- 81 (113)
Q Consensus 4 ~~~~~RL~~E~~~l~~~~~~gi~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~f~~~YP~~pP~v~f~t~i~HPn-- 81 (113)
..+.|||+||.++++ +|..-..+.|.++|+++|+++|.||.+|-||||.|+.+|.||.+||++||.+..+| ||
T Consensus 10 npaVkRlmkEa~El~-~Ptd~yha~plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLT----pNGR 84 (314)
T KOG0428|consen 10 NPAVKRLMKEAAELK-DPTDHYHAQPLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLT----PNGR 84 (314)
T ss_pred CHHHHHHHHHHHHhc-CchhhhhhccchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEc----CCCc
Confidence 457899999999997 78778889999999999999999999999999999999999999999999999999 65
Q ss_pred eeCCCcEEcccCC---CCCCccccHHHHHHHhhcC
Q 033710 82 IDKLGRICLDILK---DKWSPALQIRTVLLRYCEL 113 (113)
Q Consensus 82 v~~~G~icl~~l~---~~W~p~~~i~~il~~i~~l 113 (113)
+.-+-+||+++.. +.|.|+++|++.|++|+.+
T Consensus 85 FE~nkKiCLSISgyHPEtWqPSWSiRTALlAlIgF 119 (314)
T KOG0428|consen 85 FEVNKKICLSISGYHPETWQPSWSIRTALLALIGF 119 (314)
T ss_pred eeeCceEEEEecCCCccccCcchhHHHHHHHHHcc
Confidence 3346689999884 8899999999999998753
No 21
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=2.7e-20 Score=150.08 Aligned_cols=107 Identities=28% Similarity=0.605 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHhcCCCCCeEEEeCCCCCcEEEEEEEcCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecc--CccceeeC
Q 033710 7 PRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTK--IYHPNIDK 84 (113)
Q Consensus 7 ~~RL~~E~~~l~~~~~~gi~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~f~~~YP~~pP~v~f~t~--i~HPnv~~ 84 (113)
.+..+.|++-|..+.+.||.|...++.+.-..+.|.||.+|||.+|.|.|++.||++||.+||.|+..+. .+.||.|.
T Consensus 853 ~~~~~~~~~~~~~~~~~~~~vr~~e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npnly~ 932 (1101)
T KOG0895|consen 853 AKKVQTEWKILPLSLPSGIFVRAYEDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPNLYE 932 (1101)
T ss_pred HHHHHHHHHhhhccCCCceEEEechHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCccccc
Confidence 3445567777778889999999999999999999999999999999999999999999999999999985 58999999
Q ss_pred CCcEEcccCC-------CCCCccccHHHHHHHhhcC
Q 033710 85 LGRICLDILK-------DKWSPALQIRTVLLRYCEL 113 (113)
Q Consensus 85 ~G~icl~~l~-------~~W~p~~~i~~il~~i~~l 113 (113)
+|++|+++|. +.|+|+-++.++|.+||.|
T Consensus 933 ~g~vc~s~l~tw~g~~~e~w~~~s~~lq~l~s~q~l 968 (1101)
T KOG0895|consen 933 DGKVCLSLLNTWHGRGNEVWNPSSSILQVLVSIQGL 968 (1101)
T ss_pred ccceehhhhccccCCCccccCcchhHHHHHHHhhhh
Confidence 9999999995 6799999999999999976
No 22
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=2.5e-18 Score=138.91 Aligned_cols=110 Identities=32% Similarity=0.689 Sum_probs=103.4
Q ss_pred CchHHHHHHHHHHHhcCCCCCeEEEeCCCCCcEEEEEEEcCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecc---Cccc
Q 033710 4 SNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTK---IYHP 80 (113)
Q Consensus 4 ~~~~~RL~~E~~~l~~~~~~gi~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~f~~~YP~~pP~v~f~t~---i~HP 80 (113)
....+|+++|++-+.++.++|+.+.+.+.++...++.|.||.++||++|.|.|.|.||..||..||.+++.+. .+.|
T Consensus 281 ~~~skrv~ke~~llskdlpEgifvrp~e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R~nP 360 (1101)
T KOG0895|consen 281 KNWSKKVAKELKLLSKDLPEGIFVRPDEGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVRLNP 360 (1101)
T ss_pred hhhHHHHHHHhhhhcccCCCCccccccccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccceeecC
Confidence 3467899999999999999999999999999999999999999999999999999999999999999999987 5899
Q ss_pred eeeCCCcEEcccCC-------CCCCcc-ccHHHHHHHhhcC
Q 033710 81 NIDKLGRICLDILK-------DKWSPA-LQIRTVLLRYCEL 113 (113)
Q Consensus 81 nv~~~G~icl~~l~-------~~W~p~-~~i~~il~~i~~l 113 (113)
|.|.+|+||+++|. +.|+|. .++.++|.+||.+
T Consensus 361 NlYn~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL~sIQ~L 401 (1101)
T KOG0895|consen 361 NLYNDGKVCLSLLGTWTGSRREKWTPNGSSLLQVLESIQGL 401 (1101)
T ss_pred CcccCceEEeeeeeecccccccCCCccccchhhhhhhhhhh
Confidence 99999999999983 679999 7999999999875
No 23
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=3.7e-18 Score=117.85 Aligned_cols=105 Identities=25% Similarity=0.414 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHhcCCCCCeEEEeCCCCCcEEEEEEEcCCCCCCCCCEEEEEEeCCCCCCC--CCCeEEEeccCccceeeC
Q 033710 7 PRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPM--AAPKVRFLTKIYHPNIDK 84 (113)
Q Consensus 7 ~~RL~~E~~~l~~~~~~gi~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~f~~~YP~--~pP~v~f~t~i~HPnv~~ 84 (113)
..-|+.|+..+.+++.+||+|.|+-.|-+.|.++|++ ..+.|.||.|+|+|.+|++||. +-|+|.|.+.+|||+|.+
T Consensus 21 ey~llAEf~lV~~ekL~gIyviPSyan~l~WFGViFv-r~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~icp 99 (258)
T KOG0429|consen 21 EYALLAEFVLVCREKLDGIYVIPSYANKLLWFGVIFV-RKGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLICP 99 (258)
T ss_pred HHHHHHHHHHHHhccCCceEEcccccccceEEEEEEE-ecccccCceEEEEEEcCccCCCcCCCCeEEeeccccccccCC
Confidence 3478899999999999999999999999999999994 7789999999999999999995 889999999999999997
Q ss_pred -CCcEEcccCCCCCCccc-cHHHHHHHhhc
Q 033710 85 -LGRICLDILKDKWSPAL-QIRTVLLRYCE 112 (113)
Q Consensus 85 -~G~icl~~l~~~W~p~~-~i~~il~~i~~ 112 (113)
++.+|++-....|.-.. .+..+|..+|.
T Consensus 100 ~skeLdl~raf~eWRk~ehhiwqvL~ylqr 129 (258)
T KOG0429|consen 100 KSKELDLNRAFPEWRKEEHHIWQVLVYLQR 129 (258)
T ss_pred CccceeHhhhhhhhhccccHHHHHHHHHHH
Confidence 89999998877896655 89999988874
No 24
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=1.1e-15 Score=98.22 Aligned_cols=111 Identities=23% Similarity=0.374 Sum_probs=89.4
Q ss_pred CCCCchHHHHHHHHHHHhcCCCCCeEE-Ee-CCCC--CcEEEEEEEcCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecc
Q 033710 1 MANSNLPRRIIKETQRLLSEPAPGISA-SP-SEDN--MRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTK 76 (113)
Q Consensus 1 ma~~~~~~RL~~E~~~l~~~~~~gi~~-~~-~~~~--~~~w~~~i~gp~~t~y~g~~f~~~i~f~~~YP~~pP~v~f~t~ 76 (113)
|+..++.-||.+|+.+=++--.+|... -. +.+| +..|..+|.||+.|+||+..|.++|...++||..||.|+|.++
T Consensus 1 ~~~vPrnfrlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tk 80 (138)
T KOG0896|consen 1 MVKVPRNFRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTK 80 (138)
T ss_pred CCccccchhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEE
Confidence 566677779999998876655444432 22 2233 6689999999999999999999999999999999999999999
Q ss_pred CccceeeC-CCcEEcccC--CCCCCccccHHHHHHHhh
Q 033710 77 IYHPNIDK-LGRICLDIL--KDKWSPALQIRTVLLRYC 111 (113)
Q Consensus 77 i~HPnv~~-~G~icl~~l--~~~W~p~~~i~~il~~i~ 111 (113)
+.-+.|+. +|.+.-.-+ -++|+-.++++.+|.++.
T Consensus 81 inm~gvn~~~g~Vd~~~i~~L~~W~~~y~~~~vl~~lr 118 (138)
T KOG0896|consen 81 INMNGVNSSNGVVDPRDITVLARWQRSYSIKMVLGQLR 118 (138)
T ss_pred eeecccccCCCccCccccchhhcccccchhhHHHHhhh
Confidence 98888886 677754322 369999999999999876
No 25
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=2.5e-09 Score=67.30 Aligned_cols=59 Identities=22% Similarity=0.505 Sum_probs=47.7
Q ss_pred EEEEEeCCCCCCCCCCeEEEeccCc-cceeeCCCcEEcccC-CCCCCccccHHHHHHHhhc
Q 033710 54 FKLELFLPEEYPMAAPKVRFLTKIY-HPNIDKLGRICLDIL-KDKWSPALQIRTVLLRYCE 112 (113)
Q Consensus 54 f~~~i~f~~~YP~~pP~v~f~t~i~-HPnv~~~G~icl~~l-~~~W~p~~~i~~il~~i~~ 112 (113)
.-+.+.|+++||+.||.++...+.- ---|-.+|.||+.+| .++|+.+++++.+++++..
T Consensus 13 ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt~qgwssay~Ve~vi~qiaa 73 (122)
T KOG0897|consen 13 ILLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLTKQGWSSAYEVERVIMQIAA 73 (122)
T ss_pred eEeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHccccccchhhHHHHHHHHHH
Confidence 3467789999999999998887432 223446899999999 5899999999999998864
No 26
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=98.78 E-value=1.3e-08 Score=66.49 Aligned_cols=63 Identities=30% Similarity=0.681 Sum_probs=55.6
Q ss_pred CCCEEEEEEeCCCCCCCCCCeEEEeccC---ccceeeCCCcEEc---ccCCCCCCccccHHHHHHHhhc
Q 033710 50 EGGVFKLELFLPEEYPMAAPKVRFLTKI---YHPNIDKLGRICL---DILKDKWSPALQIRTVLLRYCE 112 (113)
Q Consensus 50 ~g~~f~~~i~f~~~YP~~pP~v~f~t~i---~HPnv~~~G~icl---~~l~~~W~p~~~i~~il~~i~~ 112 (113)
.|+.+.+++.+|++||..||.|....+. +-|||+.+|.+|+ +..-+.|.|.-.+.++|.+.+.
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~~~~~D~~~P~~~~~~~l~~a~~ 102 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDEELVLDPWDPEGIIADCLERAIR 102 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecCCcccCccCHHHHHHHHHHHHHH
Confidence 7899999999999999999999998654 6899999999999 7777899999999988876653
No 27
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=98.76 E-value=3.8e-09 Score=68.96 Aligned_cols=96 Identities=23% Similarity=0.313 Sum_probs=50.3
Q ss_pred hHHHHHHHHHHHhcCCCCCeEEEeCCCCCcEEEEEEEcCCCCCCCCC----------EEEEEEeCCCCCCCCCCeEEEec
Q 033710 6 LPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGG----------VFKLELFLPEEYPMAAPKVRFLT 75 (113)
Q Consensus 6 ~~~RL~~E~~~l~~~~~~gi~~~~~~~~~~~w~~~i~gp~~t~y~g~----------~f~~~i~f~~~YP~~pP~v~f~t 75 (113)
-..||.+|++.|.+ +++...++-..|.-.=..+++|-|.|. .|.+++.+|..||..||.|....
T Consensus 25 W~~RLKEEy~aLI~------Yv~~nK~~DndWF~lesn~~GT~W~GkCW~~h~l~kYEF~~eFdIP~tYP~t~pEi~lPe 98 (161)
T PF08694_consen 25 WVQRLKEEYQALIK------YVENNKENDNDWFRLESNKEGTRWFGKCWYIHNLLKYEFDLEFDIPVTYPTTAPEIALPE 98 (161)
T ss_dssp HHHHHHHHHHHHHH------HHHHHHHTT---EEEEE-TTSSEEEEEEEEEETTEEEEEEEEEE--TTTTTS----B-GG
T ss_pred HHHHHHHHHHHHHH------HHHhcccccCCeEEeccCCCCCccccEEEEEeeeeeEEEeeecCCCccCCCCCcceeccc
Confidence 35799999999875 222222222233222233444444442 35667778999999999998764
Q ss_pred c-CccceeeCCCcEEcccCC----CCCCccccHHHHH
Q 033710 76 K-IYHPNIDKLGRICLDILK----DKWSPALQIRTVL 107 (113)
Q Consensus 76 ~-i~HPnv~~~G~icl~~l~----~~W~p~~~i~~il 107 (113)
- --....|.+|+||++..+ ..-.|.++|...|
T Consensus 99 LdGKTaKMYRGGkIClt~HFkPLWakN~PkfGIaHal 135 (161)
T PF08694_consen 99 LDGKTAKMYRGGKICLTDHFKPLWAKNVPKFGIAHAL 135 (161)
T ss_dssp GTTT-SSBCCCCBB---TTHHHHHHCTTTT--HHHHH
T ss_pred cCCchhhhhcCceEeeecccchhhhhcCCchhHHHHH
Confidence 2 234567889999999985 4558888988775
No 28
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=98.41 E-value=1.3e-06 Score=56.36 Aligned_cols=73 Identities=23% Similarity=0.544 Sum_probs=48.0
Q ss_pred EEEEcCCCCCCCCCEEE--EEEeCCCCCCCCCCeEEEeccC-----ccceeeCCCcEEcccCCCCCCc-cccHHHHHHHh
Q 033710 39 VMILGPTQSPYEGGVFK--LELFLPEEYPMAAPKVRFLTKI-----YHPNIDKLGRICLDILKDKWSP-ALQIRTVLLRY 110 (113)
Q Consensus 39 ~~i~gp~~t~y~g~~f~--~~i~f~~~YP~~pP~v~f~t~i-----~HPnv~~~G~icl~~l~~~W~p-~~~i~~il~~i 110 (113)
..+.|--.-.|+|..|. +.|-+|.+||.+||.+...... -+.+|+++|++.+..|. +|++ ..++.+++..+
T Consensus 33 L~L~Gtipi~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~pyL~-~W~~~~s~L~~lv~~l 111 (121)
T PF05743_consen 33 LCLYGTIPITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPYLQ-NWNPPSSNLVDLVQEL 111 (121)
T ss_dssp EEEEEEEEECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHHHH-T--TTTS-HHHHHHHH
T ss_pred EEEecCcccccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCchhc-cCCCCCCCHHHHHHHH
Confidence 33444333468888775 6677899999999999876432 24499999999888875 7877 77888888776
Q ss_pred hc
Q 033710 111 CE 112 (113)
Q Consensus 111 ~~ 112 (113)
+.
T Consensus 112 ~~ 113 (121)
T PF05743_consen 112 QA 113 (121)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 29
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.10 E-value=5.9e-06 Score=53.47 Aligned_cols=95 Identities=21% Similarity=0.350 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHhcCCCCCeEEEeCCCCCcEEEEEEEcCCCCCCCCCE----------EEEEEeCCCCCCCCCCeEEEecc
Q 033710 7 PRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGV----------FKLELFLPEEYPMAAPKVRFLTK 76 (113)
Q Consensus 7 ~~RL~~E~~~l~~~~~~gi~~~~~~~~~~~w~~~i~gp~~t~y~g~~----------f~~~i~f~~~YP~~pP~v~f~t~ 76 (113)
..||.+|++.|.. +++-..++-..|.-.-..+++|.|-|.+ |-+++.+|-.||..+|.+....-
T Consensus 29 vqrlkeey~sli~------yvqnnk~~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeialpel 102 (167)
T KOG3357|consen 29 VQRLKEEYQSLIA------YVQNNKSNDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIALPEL 102 (167)
T ss_pred HHHHHHHHHHHHH------HHHhCcccCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCcccccccc
Confidence 5699999999875 3443444444565555668888887743 55666679999999998876431
Q ss_pred -CccceeeCCCcEEcccCC-CCC---CccccHHHHH
Q 033710 77 -IYHPNIDKLGRICLDILK-DKW---SPALQIRTVL 107 (113)
Q Consensus 77 -i~HPnv~~~G~icl~~l~-~~W---~p~~~i~~il 107 (113)
--.-..|..|+||+.-.+ .-| .|.+++...+
T Consensus 103 dgktakmyrggkiclt~hfkplwarn~pkfgiaha~ 138 (167)
T KOG3357|consen 103 DGKTAKMYRGGKICLTDHFKPLWARNVPKFGIAHAM 138 (167)
T ss_pred CchhhhhhcCceEeeccccchhhhhcCcchhHHHHH
Confidence 122346778999998774 334 6777777654
No 30
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=96.98 E-value=0.0032 Score=39.00 Aligned_cols=69 Identities=16% Similarity=0.153 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhcCCCCCeEEEeCCCCCcEEEEEEE--cCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEeccC
Q 033710 8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMIL--GPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKI 77 (113)
Q Consensus 8 ~RL~~E~~~l~~~~~~gi~~~~~~~~~~~w~~~i~--gp~~t~y~g~~f~~~i~f~~~YP~~pP~v~f~t~i 77 (113)
.+...|+..|+.-=+... ......+...+.+.+. ....+.-....+++.+.||++||..+|.|...+..
T Consensus 4 e~~~~EieaL~sIy~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~~ 74 (113)
T PF05773_consen 4 EQQEEEIEALQSIYPDDF-IEIESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESPK 74 (113)
T ss_dssp HHHHHHHHHHHHHSSSSE-SSSTSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEES
T ss_pred HHHHHHHHHHHHHcCCCc-cccccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcCC
Confidence 466778888865322222 2233445556666662 22344445568999999999999999999887643
No 31
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.90 E-value=0.0086 Score=44.69 Aligned_cols=68 Identities=22% Similarity=0.526 Sum_probs=49.7
Q ss_pred cCCCCCCCCCEEE--EEEeCCCCCCCCCCeEEEecc-----CccceeeCCCcEEcccCCCCCCc-cccHHHHHHHhh
Q 033710 43 GPTQSPYEGGVFK--LELFLPEEYPMAAPKVRFLTK-----IYHPNIDKLGRICLDILKDKWSP-ALQIRTVLLRYC 111 (113)
Q Consensus 43 gp~~t~y~g~~f~--~~i~f~~~YP~~pP~v~f~t~-----i~HPnv~~~G~icl~~l~~~W~p-~~~i~~il~~i~ 111 (113)
|---.+|.|.+|. +.|-+.+.||..||.+..... -.|-+|+++|.|-+..|. +|.| +..+..++..+.
T Consensus 57 GTIp~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~nG~V~LPYLh-~W~~pssdLv~Liq~l~ 132 (365)
T KOG2391|consen 57 GTIPVPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDPNGKVYLPYLH-NWDPPSSDLVGLIQELI 132 (365)
T ss_pred CcccccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCCCCeEechhhc-cCCCccchHHHHHHHHH
Confidence 3333578887766 566689999999999866422 148999999999999996 7754 556766665543
No 32
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=96.60 E-value=0.024 Score=34.77 Aligned_cols=27 Identities=33% Similarity=0.582 Sum_probs=22.9
Q ss_pred CCCEEEEEEeCCCCCCCCCCeEEEecc
Q 033710 50 EGGVFKLELFLPEEYPMAAPKVRFLTK 76 (113)
Q Consensus 50 ~g~~f~~~i~f~~~YP~~pP~v~f~t~ 76 (113)
..-.+.+.+.+|++||..+|.|.+.+.
T Consensus 39 ~~~~~~l~~~~p~~YP~~~P~i~~~~~ 65 (107)
T smart00591 39 QYVSLTLQVKLPENYPDEAPPISLLNS 65 (107)
T ss_pred cceEEEEEEECCCCCCCCCCCeEEECC
Confidence 345688999999999999999988763
No 33
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=96.27 E-value=0.043 Score=37.11 Aligned_cols=58 Identities=24% Similarity=0.467 Sum_probs=45.9
Q ss_pred EEEEeCCCCCCCCCCeEEEeccCc---cceeeCC-----CcEEcccCC-CCCCccccHHHHHHHhhc
Q 033710 55 KLELFLPEEYPMAAPKVRFLTKIY---HPNIDKL-----GRICLDILK-DKWSPALQIRTVLLRYCE 112 (113)
Q Consensus 55 ~~~i~f~~~YP~~pP~v~f~t~i~---HPnv~~~-----G~icl~~l~-~~W~p~~~i~~il~~i~~ 112 (113)
++.|.|+.+||..+|.|.+....| +||++.. ..+|+.--. .+|.+..|++.+|..|..
T Consensus 56 ~~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~~~~~p~~lCl~~~~~~e~~~~~g~~~~l~rl~~ 122 (162)
T PF14457_consen 56 RVAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPGPEGEPVSLCLYEGPWSEWRPSWGPEGFLDRLFD 122 (162)
T ss_pred eEEEEecCCCCCCCccchhhHhhCCCCCCccCCCCCCCCccceEecCCHHHhhhccCHHHHHHHHHH
Confidence 356899999999999888776543 5777755 679986553 679999999999988763
No 34
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=95.60 E-value=0.17 Score=32.65 Aligned_cols=88 Identities=20% Similarity=0.338 Sum_probs=55.2
Q ss_pred CCeEEEeCCCCCcEEEEEEEc--CCCCCCCCCEEEEEEeCCCCCCCCCCeEEEeccCc-------cceee-----CCCcE
Q 033710 23 PGISASPSEDNMRYFNVMILG--PTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIY-------HPNID-----KLGRI 88 (113)
Q Consensus 23 ~gi~~~~~~~~~~~w~~~i~g--p~~t~y~g~~f~~~i~f~~~YP~~pP~v~f~t~i~-------HPnv~-----~~G~i 88 (113)
.|+..+...+.-..|.+ |.| -+.+.|....-.+-|.+|..||..+|-.-+..+-. .|+-. -+|+.
T Consensus 12 ~g~~~E~v~eg~~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~L~~~~G~~iP~~~~~~~~~~G~~ 90 (122)
T PF14462_consen 12 RGLRWETVTEGGRRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPPLKLADGGPIPNAAEVTQTFDGRT 90 (122)
T ss_pred cCceEEEEEeCCccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECCceEccCCCcCCchhcchhhcCCee
Confidence 46666665555566655 444 56677999999999999999999888766655321 12100 02321
Q ss_pred --EcccCCCCCCccc-cHHHHHHHhh
Q 033710 89 --CLDILKDKWSPAL-QIRTVLLRYC 111 (113)
Q Consensus 89 --cl~~l~~~W~p~~-~i~~il~~i~ 111 (113)
-.+.....|.|.. ++.+.|..|.
T Consensus 91 wQrWSRH~~~W~P~~D~l~T~l~~v~ 116 (122)
T PF14462_consen 91 WQRWSRHNNPWRPGVDDLWTHLARVE 116 (122)
T ss_pred eeeecCCCCCCCCCCCcHHHHHHHHH
Confidence 1223345688876 7777766554
No 35
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=91.44 E-value=1.5 Score=36.65 Aligned_cols=68 Identities=16% Similarity=0.190 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhcCCCCCeEEEeCCCCCcEEEEEEEcCCCCCCCCCEEEEEEeCCCCCCC-CCCeEEEecc
Q 033710 8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPM-AAPKVRFLTK 76 (113)
Q Consensus 8 ~RL~~E~~~l~~~~~~gi~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~f~~~YP~-~pP~v~f~t~ 76 (113)
.-|.+|+.-+-. ..+++.++-.+-.-..-.+.+.||-..--..-..++.|.||.+||. .+|.+.|..+
T Consensus 423 QnLgeE~S~Ig~-k~~nV~fEkidva~Rsctvsln~p~~~~d~y~flrm~V~FP~nYPn~a~P~Fq~e~~ 491 (1081)
T KOG0309|consen 423 QNLGEEFSLIGV-KIRNVNFEKIDVADRSCTVSLNCPNHRVDDYIFLRMLVKFPANYPNNAAPSFQFENP 491 (1081)
T ss_pred hhHHhHHhHhhc-cccccceEeeccccceEEEEecCCCCccccceeEEEEEeccccCCCCCCCceEEecC
Confidence 345566655532 2234444433333344455666655443222345889999999998 7899999754
No 36
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=86.46 E-value=3.8 Score=28.96 Aligned_cols=37 Identities=32% Similarity=0.504 Sum_probs=25.1
Q ss_pred EEEEEEcCCCCCCCC--CEEEEEEeCCCCCCCCCCeEEEe
Q 033710 37 FNVMILGPTQSPYEG--GVFKLELFLPEEYPMAAPKVRFL 74 (113)
Q Consensus 37 w~~~i~gp~~t~y~g--~~f~~~i~f~~~YP~~pP~v~f~ 74 (113)
+.+.|. ...+-++. +.+.+.+.++++||.++|.+.+.
T Consensus 33 f~v~iq-~e~~e~d~~~~~~~l~~s~tEnYPDe~Pli~~~ 71 (215)
T KOG4018|consen 33 FEVTIQ-YEEGENDEPKGSFILVFSLTENYPDEAPLIEAF 71 (215)
T ss_pred ceeeee-cccccCCCccccEEEEEEccCCCCCCCcceecc
Confidence 566665 22222221 27889999999999999999443
No 37
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=85.05 E-value=4.7 Score=29.81 Aligned_cols=83 Identities=22% Similarity=0.384 Sum_probs=50.7
Q ss_pred hHHHHHHHHHHHhcCCCCCeEEEeCCCCCcEEEEEEEcCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEeccCccceeeCC
Q 033710 6 LPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKL 85 (113)
Q Consensus 6 ~~~RL~~E~~~l~~~~~~gi~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~f~~~YP~~pP~v~f~t~i~HPnv~~~ 85 (113)
.-++|.+|+.++..+....+ -.++++...++.+.. +.....+++.++.+||.++|.+...-++
T Consensus 100 ~ys~ll~EIe~IGW~kl~~i---~~d~~ls~i~l~~~D------~~R~H~l~l~l~~~yp~~~p~~~~~~P~-------- 162 (291)
T PF09765_consen 100 YYSNLLKEIEAIGWDKLVQI---QFDDDLSTIKLKIFD------SSRQHYLELKLPSNYPFEPPSCSLDLPI-------- 162 (291)
T ss_dssp GC-CHHHHHHHHHCGCCEEE---EE-CCCSEEEEEEET------TCEEEEEEEETTTTTTTSEEEECS-TTS--------
T ss_pred HHHHHHHHHHHhccccceEE---ecCCCccEEEEEEEc------CCceEEEEEEECCCCCCCCceeeCCCCc--------
Confidence 34578888888866543222 236678888888762 2266789999999999999965332211
Q ss_pred CcEEcccCCCCCCc-cccHHHHHHHhh
Q 033710 86 GRICLDILKDKWSP-ALQIRTVLLRYC 111 (113)
Q Consensus 86 G~icl~~l~~~W~p-~~~i~~il~~i~ 111 (113)
.+...|.+ ..++.+++.+.+
T Consensus 163 ------~~~~~w~~~~ssL~~v~~qF~ 183 (291)
T PF09765_consen 163 ------PFSLSWSPSQSSLKDVVQQFQ 183 (291)
T ss_dssp -------HHHHHHCHT-SHHHHHHHHH
T ss_pred ------chhhhhcccccCHHHHHHHHH
Confidence 00125777 567777766543
No 38
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=82.79 E-value=4.9 Score=30.32 Aligned_cols=67 Identities=24% Similarity=0.498 Sum_probs=45.8
Q ss_pred CCcEEEEEEEcCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEe-ccCccceeeCCCcEEcccCCCCCCccc--cHHHHHHH
Q 033710 33 NMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFL-TKIYHPNIDKLGRICLDILKDKWSPAL--QIRTVLLR 109 (113)
Q Consensus 33 ~~~~w~~~i~gp~~t~y~g~~f~~~i~f~~~YP~~pP~v~f~-t~i~HPnv~~~G~icl~~l~~~W~p~~--~i~~il~~ 109 (113)
....+.+.| ||.|...+-+|.|...||..||-+.|- ..-|+|.... + ..| .+|++.- .+..++..
T Consensus 52 ~~DRF~l~I------Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd~s~---l--~~L-~~Wd~~dp~~Ll~li~E 119 (333)
T PF06113_consen 52 NCDRFKLLI------PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPDPSK---L--PSL-VNWDPSDPNCLLNLISE 119 (333)
T ss_pred ccceEEEEe------eccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCChhh---c--chh-hcCCCCCchHHHHHHHH
Confidence 355666666 699999999999999999999999996 3358884321 1 112 3787664 44455544
Q ss_pred hh
Q 033710 110 YC 111 (113)
Q Consensus 110 i~ 111 (113)
|+
T Consensus 120 L~ 121 (333)
T PF06113_consen 120 LR 121 (333)
T ss_pred HH
Confidence 43
No 39
>smart00340 HALZ homeobox associated leucin zipper.
Probab=78.33 E-value=2 Score=22.47 Aligned_cols=14 Identities=43% Similarity=0.463 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHhcC
Q 033710 7 PRRIIKETQRLLSE 20 (113)
Q Consensus 7 ~~RL~~E~~~l~~~ 20 (113)
.|||++|+++|..-
T Consensus 21 NrRL~ke~~eLral 34 (44)
T smart00340 21 NRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHhc
Confidence 58999999999753
No 40
>PF14460 Prok-E2_D: Prokaryotic E2 family D
Probab=72.73 E-value=1.8 Score=29.50 Aligned_cols=19 Identities=32% Similarity=0.536 Sum_probs=14.5
Q ss_pred ccCcc---ceeeCCCcEEcccC
Q 033710 75 TKIYH---PNIDKLGRICLDIL 93 (113)
Q Consensus 75 t~i~H---Pnv~~~G~icl~~l 93 (113)
|++|| +||+.+|+||+.-.
T Consensus 90 T~Ly~aPf~NV~~~g~vC~G~~ 111 (175)
T PF14460_consen 90 TPLYHAPFFNVYSNGSVCWGNN 111 (175)
T ss_pred CeeEeCCccccCCCCcEeeCCC
Confidence 44565 49999999999764
No 41
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=72.33 E-value=7.2 Score=25.62 Aligned_cols=26 Identities=23% Similarity=0.606 Sum_probs=22.9
Q ss_pred CCCEEEEEEeCCCCCC-CCCCeEEEec
Q 033710 50 EGGVFKLELFLPEEYP-MAAPKVRFLT 75 (113)
Q Consensus 50 ~g~~f~~~i~f~~~YP-~~pP~v~f~t 75 (113)
+.|.|.|.-.+|-.|| ..||.|+|.-
T Consensus 64 ~~G~y~f~ti~Pg~Y~~~R~~HiH~~V 90 (146)
T cd00421 64 ADGRYRFRTIKPGPYPIGRPPHIHFKV 90 (146)
T ss_pred CCcCEEEEEEcCCCCCCCCCCEEEEEE
Confidence 4488999999999999 9999999973
No 42
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=68.46 E-value=9.5 Score=26.36 Aligned_cols=26 Identities=27% Similarity=0.506 Sum_probs=22.8
Q ss_pred CCCEEEEEEeCCCCCCCCCCeEEEec
Q 033710 50 EGGVFKLELFLPEEYPMAAPKVRFLT 75 (113)
Q Consensus 50 ~g~~f~~~i~f~~~YP~~pP~v~f~t 75 (113)
+.|.|+|+=.+|--||.++|.|+|.-
T Consensus 85 ~~G~~~F~TI~PG~Y~gR~~HIH~~V 110 (188)
T cd03457 85 ADGVVTFTTIFPGWYPGRATHIHFKV 110 (188)
T ss_pred CCccEEEEEECCCCCCCCCceEEEEE
Confidence 44889999999999999999999973
No 43
>TIGR03737 PRTRC_B PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.
Probab=64.33 E-value=3.4 Score=29.53 Aligned_cols=18 Identities=33% Similarity=0.584 Sum_probs=13.9
Q ss_pred cCccc---eeeCCCcEEcccC
Q 033710 76 KIYHP---NIDKLGRICLDIL 93 (113)
Q Consensus 76 ~i~HP---nv~~~G~icl~~l 93 (113)
+.||. ||+.+|+||+.-.
T Consensus 132 ~L~~aPffNV~~~G~VC~G~~ 152 (228)
T TIGR03737 132 KLYQAPLFNVWSNGEICAGNA 152 (228)
T ss_pred eeccCCcCccCCCCeEeeCCC
Confidence 35654 9999999998754
No 44
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=60.81 E-value=17 Score=24.40 Aligned_cols=25 Identities=24% Similarity=0.606 Sum_probs=22.1
Q ss_pred CCEEEEEEeCCCCCC-----CCCCeEEEec
Q 033710 51 GGVFKLELFLPEEYP-----MAAPKVRFLT 75 (113)
Q Consensus 51 g~~f~~~i~f~~~YP-----~~pP~v~f~t 75 (113)
.|.|.|+-.+|--|| ..||.|+|.-
T Consensus 72 ~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~V 101 (158)
T cd03459 72 DGRYRFRTIKPGAYPWRNGAWRAPHIHVSV 101 (158)
T ss_pred CCcEEEEEECCCCcCCCCCCCcCCEEEEEE
Confidence 488999999999999 8999999863
No 45
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=60.39 E-value=16 Score=27.62 Aligned_cols=27 Identities=26% Similarity=0.635 Sum_probs=21.9
Q ss_pred CEEEEEEeCCCCCCCCCCeEEEeccCcc
Q 033710 52 GVFKLELFLPEEYPMAAPKVRFLTKIYH 79 (113)
Q Consensus 52 ~~f~~~i~f~~~YP~~pP~v~f~t~i~H 79 (113)
-.|-+.|.+|..||...|.++|.+ ++|
T Consensus 306 F~flvHi~Lp~~FP~~qP~ltlqS-~yH 332 (333)
T PF06113_consen 306 FTFLVHISLPIQFPKDQPSLTLQS-VYH 332 (333)
T ss_pred eEEEEEEeccCCCCCcCCeEEEEe-ecc
Confidence 346678889999999999999987 444
No 46
>PF00845 Gemini_BL1: Geminivirus BL1 movement protein; InterPro: IPR000211 The movement of bipartite Geminiviruses such as squash leaf curl virus (SqLCV) requires the cooperative interaction of two essential virus-encoded movement proteins, BR1 and BL1. Recent studies of SqLCV and bean dwarf mosaic virus have shown that BR1 and BL1 act in a cooperative manner to move the viral genome intracellularly from the nucleus to the cytoplasm and across the wall cell to cell. BR1 is a nuclear shuttle protein, and it has been proposed to bind newly replicated viral ssDNA genomes and move these between the nucleus and cytoplasm. These BR1-genome complexes are then directed to the cell periphery through interactions between BR1 and BL1, where, as the result of BL1 action, the complexes are moved to adjacent uninfected cells. The precise mechanism by which BL1 acts to transport these genome complexes across the cell wall, and whether this may differ in different cell types, remains at issue [].; GO: 0003677 DNA binding, 0046740 spread of virus in host, cell to cell, 0033644 host cell membrane
Probab=57.31 E-value=27 Score=25.38 Aligned_cols=49 Identities=20% Similarity=0.320 Sum_probs=31.9
Q ss_pred CCCcEEEEEEEcCCCCCCCC---CEEEEEEeCC-----CCCCCCCCeEEEeccCccc
Q 033710 32 DNMRYFNVMILGPTQSPYEG---GVFKLELFLP-----EEYPMAAPKVRFLTKIYHP 80 (113)
Q Consensus 32 ~~~~~w~~~i~gp~~t~y~g---~~f~~~i~f~-----~~YP~~pP~v~f~t~i~HP 80 (113)
.|..-|++.....+...-+| ..|+.++.++ .|-||+||+|+.+++-|..
T Consensus 100 KDp~PWkl~YrV~DtNV~~~thFak~kgKLKLStAKHS~DI~Fr~PtikILSK~ft~ 156 (276)
T PF00845_consen 100 KDPIPWKLYYRVEDTNVHQGTHFAKFKGKLKLSTAKHSVDIPFRAPTIKILSKQFTE 156 (276)
T ss_pred CCCCCeEEEEEeecCccccceeeeeeeceeeecccccccccccCCCceEeeecccCc
Confidence 35556777766444334444 3355566654 7899999999999986543
No 47
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=51.34 E-value=27 Score=24.27 Aligned_cols=25 Identities=32% Similarity=0.537 Sum_probs=21.5
Q ss_pred CCCEEEEEEeCCCCCCC-----CCCeEEEe
Q 033710 50 EGGVFKLELFLPEEYPM-----AAPKVRFL 74 (113)
Q Consensus 50 ~g~~f~~~i~f~~~YP~-----~pP~v~f~ 74 (113)
+.|.|.|+-..|-.||. .||.|+|.
T Consensus 95 ~~G~y~f~TI~Pg~Yp~~~g~~R~~HiH~~ 124 (193)
T TIGR02423 95 ESGEFTFETVKPGAVPDRDGVLQAPHINVS 124 (193)
T ss_pred CCCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 34779999999999998 89998886
No 48
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=48.98 E-value=53 Score=20.01 Aligned_cols=26 Identities=15% Similarity=0.202 Sum_probs=21.0
Q ss_pred CCCCEEEEEEeCCCCCCCCCCeEEEecc
Q 033710 49 YEGGVFKLELFLPEEYPMAAPKVRFLTK 76 (113)
Q Consensus 49 y~g~~f~~~i~f~~~YP~~pP~v~f~t~ 76 (113)
-||..+.|...-|+.|| .|.|.+.+.
T Consensus 16 ~eG~~~~L~C~pP~g~P--~P~i~W~~~ 41 (95)
T cd05845 16 EEGDSVVLPCNPPKSAV--PLRIYWMNS 41 (95)
T ss_pred ecCCCEEEEecCCCCCC--CCEEEEECC
Confidence 46777888888899999 689988864
No 49
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=48.97 E-value=25 Score=26.41 Aligned_cols=25 Identities=28% Similarity=0.489 Sum_probs=22.1
Q ss_pred CEEEEEEeCCCCCCCCCCeEEEecc
Q 033710 52 GVFKLELFLPEEYPMAAPKVRFLTK 76 (113)
Q Consensus 52 ~~f~~~i~f~~~YP~~pP~v~f~t~ 76 (113)
-.+.+.+..++.||.+.|.|+...+
T Consensus 45 vcvtl~m~vs~gYP~esPtvtl~nP 69 (368)
T KOG4445|consen 45 VCVTLEMTVSEGYPAESPTVTLSNP 69 (368)
T ss_pred EEEEEEEecCCCCCCcCCceEecCC
Confidence 4578889999999999999999865
No 50
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=48.69 E-value=32 Score=23.73 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=20.5
Q ss_pred CCEEEEEEeCCCCCCC-----CCCeEEEe
Q 033710 51 GGVFKLELFLPEEYPM-----AAPKVRFL 74 (113)
Q Consensus 51 g~~f~~~i~f~~~YP~-----~pP~v~f~ 74 (113)
.|.|+|+-.+|--||. .||.|+|.
T Consensus 92 ~G~y~F~Ti~Pg~Y~~~~g~~R~~HIH~~ 120 (185)
T cd03463 92 DGRFSFTTVKPGAVPGRDGAGQAPHINVW 120 (185)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 3779999999999995 88888876
No 51
>PF12065 DUF3545: Protein of unknown function (DUF3545); InterPro: IPR021932 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 60 to 77 amino acids in length. This protein has two completely conserved residues (R and L) that may be functionally important.
Probab=45.02 E-value=16 Score=20.53 Aligned_cols=12 Identities=33% Similarity=0.346 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHh
Q 033710 7 PRRIIKETQRLL 18 (113)
Q Consensus 7 ~~RL~~E~~~l~ 18 (113)
.+||++||+++-
T Consensus 36 r~rL~kEL~d~D 47 (59)
T PF12065_consen 36 RQRLRKELQDMD 47 (59)
T ss_pred HHHHHHHHHHcc
Confidence 468999998884
No 52
>PF14135 DUF4302: Domain of unknown function (DUF4302)
Probab=44.85 E-value=90 Score=22.09 Aligned_cols=71 Identities=15% Similarity=0.177 Sum_probs=37.8
Q ss_pred chHHHHHHHHHHHhcCCCCCeEEEeCCCCCcEEEEEEEcCCCCCCCCCEEEEEEeCCCCC-------------------C
Q 033710 5 NLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEY-------------------P 65 (113)
Q Consensus 5 ~~~~RL~~E~~~l~~~~~~gi~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~f~~~Y-------------------P 65 (113)
+...||.+.++++++.. .+...-|.+.+....+..| || |.+.+.|.++= -
T Consensus 9 s~~eR~~e~~~~~k~~L---------~~a~~GW~~~yyp~~~~~~-GG-y~f~~kF~~~~~Vtm~sd~~~~~~~~tS~Y~ 77 (235)
T PF14135_consen 9 SPAERINEALAEYKKIL---------TSAPNGWKLEYYPKTDQSY-GG-YTFLMKFDDDGKVTMASDFDSASTPSTSSYR 77 (235)
T ss_pred CHHHHHHHHHHHHHHHH---------hcCCCceEEEEECCCCccC-Cc-EEEEEEECCCCeEEEEEccCCCCceeeEEEE
Confidence 45678888777776521 2222335666652222223 22 66665554332 2
Q ss_pred C---CCCeEEEecc--CccceeeCCC
Q 033710 66 M---AAPKVRFLTK--IYHPNIDKLG 86 (113)
Q Consensus 66 ~---~pP~v~f~t~--i~HPnv~~~G 86 (113)
. .-|.+.|.|- +.|-..++++
T Consensus 78 ~~~~~gp~LsFdTyN~~iH~~s~p~~ 103 (235)
T PF14135_consen 78 LKQDQGPVLSFDTYNEYIHYFSDPSN 103 (235)
T ss_pred EecCCceEEEEEeCCceEEEccCCCc
Confidence 2 3388888873 6776666543
No 53
>COG3140 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.01 E-value=40 Score=18.70 Aligned_cols=26 Identities=8% Similarity=0.020 Sum_probs=19.6
Q ss_pred CCCCchHHHHHHHHHHHhcCCCCCeE
Q 033710 1 MANSNLPRRIIKETQRLLSEPAPGIS 26 (113)
Q Consensus 1 ma~~~~~~RL~~E~~~l~~~~~~gi~ 26 (113)
||+.-+..-+.+|+++-+++...+..
T Consensus 28 mSsGEAIa~VA~elRe~hk~~~~~~~ 53 (60)
T COG3140 28 MSSGEAIALVAQELRENHKGENRIVA 53 (60)
T ss_pred ccchhHHHHHHHHHHHHhcccccccc
Confidence 67777888889999998887654443
No 54
>PF00779 BTK: BTK motif; InterPro: IPR001562 The Btk-type zinc finger or Btk motif (BM) is a conserved zinc-binding motif containing conserved cysteines and a histidine that is present in certain eukaryotic signalling proteins. The motif is named after Bruton's tyrosine kinase (Btk), an enzyme which is essential for B cell maturation in humans and mice [, ]. Btk is a member of the Tec family of protein tyrosine kinases (PTK). These kinases contain a conserved Tec homology (TH) domain between the N-terminal pleckstrin homology (PH) domain (IPR001849 from INTERPRO) and the Src homology 3 (SH3) domain (IPR001452 from INTERPRO). The N-terminal of the TH domain is highly conserved and known as the Btf motif, while the C-terminal region of the TH domain contains a proline-rich region (PRR). The Btk motif contains a conserved His and three Cys residues that form a zinc finger (although these differ from known zinc finger topologies), while PRRs are commonly involved in protein-protein interactions, including interactions with G proteins [, ]. The TH domain may be of functional importance in various signalling pathways in different species []. A complete TH domain, containing both the Btk and PRR regions, has not been found outside the Tec family; however, the Btk motif on its own does occur in other proteins, usually C-terminal to a PH domain (note that although a Btk motif always occurs C-terminal to a PH domain, not all PH domains are followed by a Btk motif). The crystal structures of Btk show that the Btk-type zinc finger has a globular core, formed by a long loop which is held together by a zinc ion, and that the Btk motif is packed against the PH domain []. The zinc-binding residues are a histidine and three cysteines, which are fully conserved in the Btk motif []. Proteins known to contain a Btk-type zinc finger include: Mammalian Bruton's tyrosine kinase (Btk), a protein tyrosine kinase involved in modulation of diverse cellular processes. Mutations affecting Btk are the cause of X-linked agammaglobulinemia (XLA) in humans and X-linked immunodeficiency in mice. Mammalian Tec, Bmx, and Itk proteins, which are tyrosine protein kinases of the Tec subfamily. Drosophila tyrosine-protein kinase Btk29A, which is required for the development of proper ring canals and of male genitalia and required for adult survival. Mammalian Ras GTPase-activating proteins (RasGAP), which regulate the activation of inactive GDP-bound Ras by converting GDP to GTP. ; GO: 0035556 intracellular signal transduction; PDB: 2E6I_A 2YS2_A 2Z0P_A 1B55_A 1BTK_B 1BWN_A.
Probab=42.23 E-value=9.8 Score=18.62 Aligned_cols=15 Identities=33% Similarity=0.769 Sum_probs=9.2
Q ss_pred CccceeeCCCc-EEcc
Q 033710 77 IYHPNIDKLGR-ICLD 91 (113)
Q Consensus 77 i~HPnv~~~G~-icl~ 91 (113)
-|||.++.+|+ .|..
T Consensus 2 ~yHPg~~~~g~W~CC~ 17 (32)
T PF00779_consen 2 KYHPGAWRGGKWLCCK 17 (32)
T ss_dssp EE-SS-EETTCESSSS
T ss_pred CcCCCcccCCcCcCCC
Confidence 48999998876 5544
No 55
>smart00107 BTK Bruton's tyrosine kinase Cys-rich motif. Zinc-binding motif containing conserved cysteines and a histidine. Always found C-terminal to PH domains (but not all PH domains are followed by BTK motifs). The crystal structure shows this motif packs against the PH domain. The PH+Btk module pair has been called the Tec homology (TH) region.
Probab=41.95 E-value=11 Score=18.97 Aligned_cols=15 Identities=33% Similarity=0.740 Sum_probs=11.2
Q ss_pred CccceeeCCCc-EEcc
Q 033710 77 IYHPNIDKLGR-ICLD 91 (113)
Q Consensus 77 i~HPnv~~~G~-icl~ 91 (113)
-|||.++.+|+ .|..
T Consensus 7 ~yHP~~~~~G~W~CC~ 22 (36)
T smart00107 7 KYHPSFWVDGKWLCCQ 22 (36)
T ss_pred ccCCCceeCCeEccCC
Confidence 48999998876 5543
No 56
>KOG3285 consensus Spindle assembly checkpoint protein [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=41.20 E-value=61 Score=22.52 Aligned_cols=38 Identities=18% Similarity=0.316 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHhcCCCCCeEEEeCCCCCcEEEEEEEc
Q 033710 6 LPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILG 43 (113)
Q Consensus 6 ~~~RL~~E~~~l~~~~~~gi~~~~~~~~~~~w~~~i~g 43 (113)
..+|+++|++.+.+.-...++.-|.-+..-.+.+.+.-
T Consensus 120 ~~~~iq~EIraviRQItasVtfLP~Le~~ctFdvLiyT 157 (203)
T KOG3285|consen 120 DLKRIQNEIRAVIRQITASVTFLPLLEEICTFDVLIYT 157 (203)
T ss_pred HHHHHHHHHHHHHHHHhhheeecccccceeEEEEEEEe
Confidence 46899999999999888888877766666777777763
No 57
>PF04881 Adeno_GP19K: Adenovirus GP19K; InterPro: IPR006965 This 19 kDa glycoprotein binds the major histocompatibility (MHC) class I antigens in the endoplasmic reticulum (ER). The ER retention signal at the C terminus of Gp19K causes retention of the complex in the ER, preventing lysis of the cell by cytotoxic T-lymphocytes [].; GO: 0005537 mannose binding, 0050690 regulation of defense response to virus by virus
Probab=40.52 E-value=30 Score=22.66 Aligned_cols=21 Identities=19% Similarity=0.417 Sum_probs=17.2
Q ss_pred CCCCCcEEEEEEEcCCCCCCC
Q 033710 30 SEDNMRYFNVMILGPTQSPYE 50 (113)
Q Consensus 30 ~~~~~~~w~~~i~gp~~t~y~ 50 (113)
...|...|.|++.|++|++..
T Consensus 43 qPGd~~~ytVtV~G~dGs~~~ 63 (139)
T PF04881_consen 43 QPGDPEWYTVTVQGPDGSIRK 63 (139)
T ss_pred cCCCCcceEEEEECCCCccee
Confidence 456778899999999998775
No 58
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=40.47 E-value=12 Score=26.03 Aligned_cols=24 Identities=29% Similarity=0.501 Sum_probs=20.8
Q ss_pred CCcEEcccCCCCCCccccHHHHHH
Q 033710 85 LGRICLDILKDKWSPALQIRTVLL 108 (113)
Q Consensus 85 ~G~icl~~l~~~W~p~~~i~~il~ 108 (113)
.+.+|.++++..|+|.+|++..+.
T Consensus 135 ~~~f~~sIlDr~Y~pdmt~eea~~ 158 (200)
T KOG0177|consen 135 GSYFCLSILDRYYKPDMTIEEALD 158 (200)
T ss_pred hhhhhHHHHHhhhCCCCCHHHHHH
Confidence 457999999999999999988764
No 59
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=39.16 E-value=85 Score=18.68 Aligned_cols=43 Identities=14% Similarity=0.171 Sum_probs=28.7
Q ss_pred cEEEEEEEcCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEeccCcc
Q 033710 35 RYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYH 79 (113)
Q Consensus 35 ~~w~~~i~gp~~t~y~g~~f~~~i~f~~~YP~~pP~v~f~t~i~H 79 (113)
..|.+-+.|+.+.--..-.=++...+.+.|+. |...+..+.|.
T Consensus 2 h~W~v~Vr~~~~~d~~~~i~kV~f~LHpsF~~--p~r~v~~pPFe 44 (84)
T PF03366_consen 2 HKWTVYVRGLDNEDLSYFIKKVTFKLHPSFPN--PVRVVTKPPFE 44 (84)
T ss_dssp EEEEEEEEECCCT--TTTEEEEEEES-TTSSS---EEECSSTTEE
T ss_pred cEEEEEEEeCCCCCccceEEEEEEECCCCCCC--CceEecCCCCE
Confidence 57999999888764445566788888888884 77666665443
No 60
>PF14455 Metal_CEHH: Predicted metal binding domain
Probab=39.03 E-value=88 Score=21.21 Aligned_cols=65 Identities=14% Similarity=0.267 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhcCCC----CCeEEEeCCCCCcEEEEEEEcCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecc
Q 033710 8 RRIIKETQRLLSEPA----PGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTK 76 (113)
Q Consensus 8 ~RL~~E~~~l~~~~~----~gi~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~f~~~YP~~pP~v~f~t~ 76 (113)
+..-+|.+.+..... .|+.+. +.+.=...+.+--|+-.|- --...+++.|. ||-..||.|.|+.+
T Consensus 8 akFdR~V~~~~~~~~a~r~rgwfLi--qa~fP~~~~iF~~~kvaP~-~~~~~lr~d~~-n~Dl~PPSV~fvDp 76 (177)
T PF14455_consen 8 AKFDRQVGRFRPRADAYRMRGWFLI--QASFPTADVIFAAPKVAPR-SIGLRLRFDFT-NWDLRPPSVVFVDP 76 (177)
T ss_pred HHHHHHHhhhhhhhhHhhhcCeEEE--EccCceEEEEeeCCccCcc-ccceEEEEecc-ccCcCCCceEEecc
Confidence 345566776665431 466543 2333333444433444442 22246677774 59999999999876
No 61
>PF09929 DUF2161: Uncharacterized conserved protein (DUF2161); InterPro: IPR018679 This family of various hypothetical prokaryotic proteins has no known function.
Probab=38.97 E-value=30 Score=22.23 Aligned_cols=20 Identities=30% Similarity=0.504 Sum_probs=15.8
Q ss_pred chHHHHHHHHHHHhcCCCCC
Q 033710 5 NLPRRIIKETQRLLSEPAPG 24 (113)
Q Consensus 5 ~~~~RL~~E~~~l~~~~~~g 24 (113)
....||++|++..+.++..|
T Consensus 27 krr~rLl~Ef~rR~GDpn~G 46 (118)
T PF09929_consen 27 KRRSRLLREFQRRSGDPNVG 46 (118)
T ss_pred HHHHHHHHHHHHhcCCCCCC
Confidence 35679999999998887643
No 62
>PRK11700 hypothetical protein; Provisional
Probab=38.87 E-value=1.3e+02 Score=20.88 Aligned_cols=71 Identities=20% Similarity=0.420 Sum_probs=43.7
Q ss_pred CCcEEEEE---EEcCCCCCCC-CCEEEEEEeCC--------------CCCCCCCCeEEEec--c------Cccceee-CC
Q 033710 33 NMRYFNVM---ILGPTQSPYE-GGVFKLELFLP--------------EEYPMAAPKVRFLT--K------IYHPNID-KL 85 (113)
Q Consensus 33 ~~~~w~~~---i~gp~~t~y~-g~~f~~~i~f~--------------~~YP~~pP~v~f~t--~------i~HPnv~-~~ 85 (113)
..-.|.+. +.-|.+..|- -|+=++++.+| .+.+..++-|++.. + .-.|-|. .+
T Consensus 87 ~~~~w~I~cvELP~P~~k~Yp~eGWEHIElVlp~~~~t~~~~~~all~~~~l~~~gikvK~SsPkge~ERL~NPTlAv~~ 166 (187)
T PRK11700 87 QVGHWSIDCVELPYPGEKRYPHEGWEHIELVLPGDPETLDARALALLSDEGLSLPGIKVKTSSPKGEGERLPNPTLAVTD 166 (187)
T ss_pred eeCCcEEEEEEeCCCCCCCCCCCCceEEEEEecCCcchHHHHHHHhccccccccCCcEEEecCCCccCccCCCCcEEEee
Confidence 34456553 3335444442 46777888876 33455566565553 2 4566665 58
Q ss_pred CcEEcccCCCCCCccccHHHHHHH
Q 033710 86 GRICLDILKDKWSPALQIRTVLLR 109 (113)
Q Consensus 86 G~icl~~l~~~W~p~~~i~~il~~ 109 (113)
|.+|+.+.. ++++.|+.+
T Consensus 167 ~~vcIK~HP------~slk~IV~S 184 (187)
T PRK11700 167 GGICIKFHP------HSIKEIVAS 184 (187)
T ss_pred CCEEEEEcC------ccHHHHHHh
Confidence 999999885 788887754
No 63
>PRK15486 hpaC 4-hydroxyphenylacetate 3-monooxygenase reductase subunit; Provisional
Probab=38.52 E-value=20 Score=24.32 Aligned_cols=68 Identities=10% Similarity=0.190 Sum_probs=41.3
Q ss_pred HHHHHHHHhcCCCCCeEEEeCCCCCcEEEEEEEcCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecc---CccceeeCCC
Q 033710 10 IIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTK---IYHPNIDKLG 86 (113)
Q Consensus 10 L~~E~~~l~~~~~~gi~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~f~~~YP~~pP~v~f~t~---i~HPnv~~~G 86 (113)
+..++++....-..|+++.-..++ +.+ .|-+-.--..+ -.+||.|.+.=. --|+-+..+|
T Consensus 6 ~~~~fr~am~~~a~GV~VVTt~~~------------~~~-~G~Tvss~~Sv----SldPPlvlv~l~~~s~~~~~i~~sg 68 (170)
T PRK15486 6 QRLRFRDAMASLSAAVNIVTTAGD------------AGR-CGITATAVCSV----TDTPPSVMVCINANSAMNPVFQGNG 68 (170)
T ss_pred hHHHHHHHHhccCCceEEEEEecC------------CCc-EEEEEEEEEEe----EcCCCEEEEEECCCCchhHHHHhCC
Confidence 345688888888888886532211 111 12111111111 136999988633 5688888899
Q ss_pred cEEcccCC
Q 033710 87 RICLDILK 94 (113)
Q Consensus 87 ~icl~~l~ 94 (113)
.+|+++|.
T Consensus 69 ~F~VnvL~ 76 (170)
T PRK15486 69 KLCINVLN 76 (170)
T ss_pred eEEEEECh
Confidence 99999995
No 64
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial. Members of this family known so far are catechol 1,2-dioxygenases of the Proteobacteria. They are distinct from catechol 1,2-dioxygenases and chlorocatechol 1,2-dioxygenases of the Actinobacteria, which are quite similar to each other and resolved by separate models. This enzyme catalyzes intradiol cleavage in which catechol + O2 becomes cis,cis-muconate. Catechol is an intermediate in the catabolism of many different aromatic compounds, as is the alternative intermediate protocatechuate. In Acinetobacter lwoffii, two isozymes are present with abilities, differing somewhat, to act on catechol analogs 3-methylcatechol, 4-methylcatechol, 4-methoxycatechol, and 4-chlorocatechol.
Probab=35.40 E-value=64 Score=23.91 Aligned_cols=24 Identities=21% Similarity=0.502 Sum_probs=20.7
Q ss_pred CCEEEEEEeCCCCCC------------------CCCCeEEEe
Q 033710 51 GGVFKLELFLPEEYP------------------MAAPKVRFL 74 (113)
Q Consensus 51 g~~f~~~i~f~~~YP------------------~~pP~v~f~ 74 (113)
.|.|.|+=..|.-|| ..||.|+|.
T Consensus 180 ~G~y~F~TI~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~ 221 (285)
T TIGR02439 180 EGRYRARSIVPSGYGCPPQGPTQQLLNLLGRHGNRPAHVHFF 221 (285)
T ss_pred CCCEEEEEECCCCCcCCCCCcHHHHHHhccCCCCCCCeEEEE
Confidence 488999999999997 688999886
No 65
>PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A ....
Probab=34.80 E-value=28 Score=19.41 Aligned_cols=15 Identities=13% Similarity=0.523 Sum_probs=9.2
Q ss_pred CCCccccHHHHHHHh
Q 033710 96 KWSPALQIRTVLLRY 110 (113)
Q Consensus 96 ~W~p~~~i~~il~~i 110 (113)
+|.|.++|++++...
T Consensus 37 gW~p~~~L~~~i~~~ 51 (62)
T PF13950_consen 37 GWKPKYSLEDMIRDA 51 (62)
T ss_dssp ----SSSHHHHHHHH
T ss_pred CCCcCCCHHHHHHHH
Confidence 799999999998653
No 66
>TIGR02296 HpaC 4-hydroxyphenylacetate 3-monooxygenase, reductase component. These reductases catalyze the reduction of free flavins by NADPH. The flavin is then utilized by the large subunit of the monooxygenase.
Probab=34.28 E-value=21 Score=23.62 Aligned_cols=29 Identities=21% Similarity=0.527 Sum_probs=23.5
Q ss_pred CCCCeEEEec---cCccceeeCCCcEEcccCC
Q 033710 66 MAAPKVRFLT---KIYHPNIDKLGRICLDILK 94 (113)
Q Consensus 66 ~~pP~v~f~t---~i~HPnv~~~G~icl~~l~ 94 (113)
.+||.|.+.= .--|+.+..+|.+|+++|.
T Consensus 36 ~~PP~v~v~l~~~s~t~~~i~~~g~F~VnvL~ 67 (154)
T TIGR02296 36 DTPPTVMVCINRNSAMNPIFQENGKLCINVLA 67 (154)
T ss_pred cCCCEEEEEECCCCchhHHHHhCCeEEEEECc
Confidence 4899998863 3468888889999999995
No 67
>cd03461 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes the ring cleavage of hydroxyquinol (1,2,4-trihydroxybenzene), a intermediate in the degradation of a large variety of aromatic compounds including some polychloro- and nitroaromatic pollutants, to form 3-hydroxy-cis,cis-muconates. 1,2-HQD blongs to the aromatic dioxygenase family, a family of mononuclear non-heme intradiol-cleaving enzymes.
Probab=33.92 E-value=70 Score=23.59 Aligned_cols=25 Identities=28% Similarity=0.729 Sum_probs=21.3
Q ss_pred CCCEEEEEEeCCCCCC------------------CCCCeEEEe
Q 033710 50 EGGVFKLELFLPEEYP------------------MAAPKVRFL 74 (113)
Q Consensus 50 ~g~~f~~~i~f~~~YP------------------~~pP~v~f~ 74 (113)
+.|.|.|+-..|.-|| ..||.|+|.
T Consensus 171 ~~G~y~F~Ti~Pg~Ypip~dGp~g~lL~~~grh~~RpaHIHf~ 213 (277)
T cd03461 171 EDGRYAFRTLRPTPYPIPTDGPVGKLLKAMGRHPMRPAHIHFM 213 (277)
T ss_pred CCCCEEEEEECCCCcCCCCCCcHHHHHHhhhccCCCCCeEEEE
Confidence 3588999999999998 589999886
No 68
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=33.31 E-value=45 Score=26.09 Aligned_cols=21 Identities=33% Similarity=0.773 Sum_probs=15.2
Q ss_pred EEEEeCCCCCCC-CCCeEEEec
Q 033710 55 KLELFLPEEYPM-AAPKVRFLT 75 (113)
Q Consensus 55 ~~~i~f~~~YP~-~pP~v~f~t 75 (113)
.+.+.+|++||. +||++...+
T Consensus 77 vlkf~LP~~YPs~spP~f~l~s 98 (445)
T KOG1814|consen 77 VLKFHLPNDYPSVSPPKFELKS 98 (445)
T ss_pred eeeeecCCccccCCCCceeeeh
Confidence 356678999997 778765543
No 69
>cd03464 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4-PCD) , beta subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=32.62 E-value=79 Score=22.49 Aligned_cols=24 Identities=21% Similarity=0.609 Sum_probs=20.6
Q ss_pred CCEEEEEEeCCCCCCC-------CCCeEEEe
Q 033710 51 GGVFKLELFLPEEYPM-------AAPKVRFL 74 (113)
Q Consensus 51 g~~f~~~i~f~~~YP~-------~pP~v~f~ 74 (113)
.|.|.|.-..|--||. .||.|+|.
T Consensus 122 ~G~y~F~TI~Pg~Yp~p~~r~~~RppHIH~~ 152 (220)
T cd03464 122 DGYYRFRTIKPGAYPWGNHPNAWRPAHIHFS 152 (220)
T ss_pred CccEEEEEECCCCccCCCCCCCCcCCeEEEE
Confidence 4889999999999974 89999985
No 70
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=31.52 E-value=51 Score=26.91 Aligned_cols=29 Identities=38% Similarity=0.811 Sum_probs=23.6
Q ss_pred CCCCCCEEEEEEeCCCCCCC---CCCeEEEecc
Q 033710 47 SPYEGGVFKLELFLPEEYPM---AAPKVRFLTK 76 (113)
Q Consensus 47 t~y~g~~f~~~i~f~~~YP~---~pP~v~f~t~ 76 (113)
+||.=|.|-+ +.+|++||+ +-|.++|+|+
T Consensus 248 GpY~WgryDl-lvlPpSFP~gGMENPcltF~Tp 279 (613)
T KOG1047|consen 248 GPYVWGRYDL-LVLPPSFPFGGMENPCLTFVTP 279 (613)
T ss_pred CCcccccceE-EEecCCCCcccccCcceeeecc
Confidence 5777788875 557889998 8899999995
No 71
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=31.29 E-value=1.5e+02 Score=23.28 Aligned_cols=15 Identities=20% Similarity=0.445 Sum_probs=12.0
Q ss_pred CEEEEEEeCCCCCCC
Q 033710 52 GVFKLELFLPEEYPM 66 (113)
Q Consensus 52 ~~f~~~i~f~~~YP~ 66 (113)
-...+.+.||.+|+.
T Consensus 209 e~k~i~vtFP~dy~a 223 (441)
T COG0544 209 EEKDIKVTFPEDYHA 223 (441)
T ss_pred CeeEEEEEcccccch
Confidence 335688999999996
No 72
>TIGR02438 catachol_actin catechol 1,2-dioxygenase, Actinobacterial. Members of this family are catechol 1,2-dioxygenases of the Actinobacteria. They are more closely related to actinobacterial chlorocatechol 1,2-dioxygenases than to proteobacterial catechol 1,2-dioxygenases, and so are built in this separate model. The member from Rhodococcus rhodochrous NCIMB 13259 (GB|AAC33003.1) is described as a homodimer with bound Fe, similarly active on catechol, 3-methylcatechol and 4-methylcatechol.
Probab=31.23 E-value=84 Score=23.24 Aligned_cols=25 Identities=16% Similarity=0.437 Sum_probs=20.6
Q ss_pred CCCEEEEEEeCCCCCC------------------CCCCeEEEe
Q 033710 50 EGGVFKLELFLPEEYP------------------MAAPKVRFL 74 (113)
Q Consensus 50 ~g~~f~~~i~f~~~YP------------------~~pP~v~f~ 74 (113)
+.|.|.|+=..|..|| ..||.|+|.
T Consensus 183 adG~y~F~TI~Pg~YpiP~dGp~G~lL~~~Grh~~RpaHIHf~ 225 (281)
T TIGR02438 183 DEGRFEITTMQPAPYQIPTDGPTGKFIAAAGGHPWRPAHLHLK 225 (281)
T ss_pred CCCCEEEEEECCCCcCCCCCCchHHHHHhcccCCCCCCEEEEE
Confidence 3588999999998887 588999886
No 73
>TIGR02422 protocat_beta protocatechuate 3,4-dioxygenase, beta subunit. This model represents the beta chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the alpha chain (TIGR02423), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=31.02 E-value=86 Score=22.28 Aligned_cols=24 Identities=21% Similarity=0.602 Sum_probs=20.8
Q ss_pred CCEEEEEEeCCCCCCC-------CCCeEEEe
Q 033710 51 GGVFKLELFLPEEYPM-------AAPKVRFL 74 (113)
Q Consensus 51 g~~f~~~i~f~~~YP~-------~pP~v~f~ 74 (113)
.|.|+|+=..|--||. .||.|+|.
T Consensus 117 ~G~y~F~TI~PG~Y~~p~~~~~~R~pHIH~~ 147 (220)
T TIGR02422 117 DGYYRFRTIKPGPYPWGNHHNAWRPAHIHFS 147 (220)
T ss_pred CccEEEEEECCCCccCCCCCCCCcCCeEEEE
Confidence 5889999999999975 89999884
No 74
>cd03460 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyzes an intradiol cleavage reaction of catechol to form cis,cis-muconate. 1,2-CTDs is homodimers with one catalytic non-heme ferric ion per monomer. They belong to the aromatic dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=30.13 E-value=89 Score=23.13 Aligned_cols=24 Identities=17% Similarity=0.569 Sum_probs=20.5
Q ss_pred CCEEEEEEeCCCCCC------------------CCCCeEEEe
Q 033710 51 GGVFKLELFLPEEYP------------------MAAPKVRFL 74 (113)
Q Consensus 51 g~~f~~~i~f~~~YP------------------~~pP~v~f~ 74 (113)
.|.|.|+=..|.-|| ..||.|+|.
T Consensus 176 ~G~y~F~TI~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~ 217 (282)
T cd03460 176 DGRYRFRSIMPSGYGVPPGGPTQQLLNALGRHGNRPAHIHFF 217 (282)
T ss_pred CCCEEEEEECCCCCcCCCCCcHHHHHHhhcCCCCCCCeEEEE
Confidence 488999999999997 578999886
No 75
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=29.40 E-value=1e+02 Score=22.57 Aligned_cols=30 Identities=23% Similarity=0.537 Sum_probs=26.0
Q ss_pred CCCCCCCEEEEEEeCCCCCCCCC--CeEEEec
Q 033710 46 QSPYEGGVFKLELFLPEEYPMAA--PKVRFLT 75 (113)
Q Consensus 46 ~t~y~g~~f~~~i~f~~~YP~~p--P~v~f~t 75 (113)
.+.+.|..|++-+..|.+||-.- |.|.|+.
T Consensus 15 ~s~~~~~~yri~i~~P~~~~~~~~YpVlY~lD 46 (264)
T COG2819 15 KSANTGRKYRIFIATPKNYPKPGGYPVLYMLD 46 (264)
T ss_pred eecCCCcEEEEEecCCCCCCCCCCCcEEEEec
Confidence 35688999999999999999877 9999885
No 76
>TIGR03615 RutF pyrimidine utilization flavin reductase protein F. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the flavin reductase family defined by pfam01613. Presumably, this protein recycles the flavin of the RutA luciferase-like oxidoreductase.
Probab=28.45 E-value=31 Score=22.83 Aligned_cols=66 Identities=11% Similarity=0.155 Sum_probs=40.0
Q ss_pred HHHHHHhcCCCCCeEEEeCCCCCcEEEEEEEcCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEec---cCccceeeCCCcE
Q 033710 12 KETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLT---KIYHPNIDKLGRI 88 (113)
Q Consensus 12 ~E~~~l~~~~~~gi~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~f~~~YP~~pP~v~f~t---~i~HPnv~~~G~i 88 (113)
+++++....-..|+.+....+ ++.+ .|. ++.-=..--.+||.+.+.- .--|+.+..+|.+
T Consensus 4 ~~fr~am~~~~~gV~vVT~~~------------~~~~-~g~----tvss~~svS~~PP~v~v~l~~~s~t~~~i~~s~~F 66 (156)
T TIGR03615 4 QAFRDAMSRLGAAVNIITTDG------------PAGR-AGF----TASAVCSVTDTPPTLLVCLNRSASAYPAFKQNGTL 66 (156)
T ss_pred HHHHHHHhccCCCeEEEEeec------------CCCc-eeE----EEEeEeeccCCCCEEEEEeCCCcchhHHHHhCCeE
Confidence 467777777777887643211 1111 121 1111112345899998863 3467888899999
Q ss_pred EcccCC
Q 033710 89 CLDILK 94 (113)
Q Consensus 89 cl~~l~ 94 (113)
++++|.
T Consensus 67 ~VnvL~ 72 (156)
T TIGR03615 67 CVNTLA 72 (156)
T ss_pred EEEECc
Confidence 999985
No 77
>PF09458 H_lectin: H-type lectin domain; InterPro: IPR019019 The H-type lectin domain is a unit of six beta chains, combined into a homo-hexamer. It is involved in self/non-self recognition of cells, through binding with carbohydrates []. It is sometimes found in association with the C-terminal domain of coagulation factor F5/8 (IPR000421 from INTERPRO). ; GO: 0005529 sugar binding, 0007155 cell adhesion; PDB: 2CGY_A 2CGZ_A 2CCV_A 2CE6_A 2VME_B 2VMC_A 2VMD_A 2VM9_A 2W94_A 2WN3_C ....
Probab=27.88 E-value=95 Score=17.23 Aligned_cols=21 Identities=10% Similarity=0.284 Sum_probs=11.9
Q ss_pred EEEEEEeCCCCCCCCCCeEEEe
Q 033710 53 VFKLELFLPEEYPMAAPKVRFL 74 (113)
Q Consensus 53 ~f~~~i~f~~~YP~~pP~v~f~ 74 (113)
.+..+|.|++.|.. ||+|.+-
T Consensus 2 ~~~~~I~F~~~F~~-~P~V~~~ 22 (72)
T PF09458_consen 2 EYSQTITFSKPFSS-PPQVIVS 22 (72)
T ss_dssp EEEEEEE-SS--SS---EEEEE
T ss_pred ceEEEeEcChhcCC-CCEEEEE
Confidence 35678999988885 8888764
No 78
>TIGR02465 chlorocat_1_2 chlorocatechol 1,2-dioxygenase. Members of this protein family are chlorocatechol 1,2-dioxygenase. This protein is closely related to catechol 1,2-dioxygenase, TIGR02439, EC 1.13.11.1. Note that annotated database entries have appeared for the present protein family with the EC number that refers to that of family TIGR02439. This protein acts in pathways of the biodegradation of chlorinated aromatic compounds.
Probab=27.57 E-value=1.1e+02 Score=22.14 Aligned_cols=25 Identities=16% Similarity=0.440 Sum_probs=20.5
Q ss_pred CCCEEEEEEeCCCCCC------------------CCCCeEEEe
Q 033710 50 EGGVFKLELFLPEEYP------------------MAAPKVRFL 74 (113)
Q Consensus 50 ~g~~f~~~i~f~~~YP------------------~~pP~v~f~ 74 (113)
+.|.|.|+=..|.-|| ..||.|+|.
T Consensus 149 ~~G~y~F~Ti~P~~YpiP~dgp~g~lL~~~grh~~RpaHIH~~ 191 (246)
T TIGR02465 149 ADGSYEVRTTMPVPYQIPDAGPTGALLETMGRHSWRPAHVHYK 191 (246)
T ss_pred CCCCEEEEEECCCCCCCCCCCchHHHHHhcccCCCCCCeEEEE
Confidence 4588999999999997 478888886
No 79
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms]
Probab=26.89 E-value=1.6e+02 Score=22.98 Aligned_cols=27 Identities=15% Similarity=0.081 Sum_probs=21.5
Q ss_pred eCCCCCCCCCCeEEEeccCccceeeCC
Q 033710 59 FLPEEYPMAAPKVRFLTKIYHPNIDKL 85 (113)
Q Consensus 59 ~f~~~YP~~pP~v~f~t~i~HPnv~~~ 85 (113)
.|...|++.||.++....+.|.-+.++
T Consensus 303 ~fr~~~~~t~PyltaeP~i~~HrL~p~ 329 (390)
T KOG0700|consen 303 KFRIPYIGTPPYLTAEPSITHHKLTPN 329 (390)
T ss_pred hcCCCCCCCCCceeccceEEEEEcCCC
Confidence 688899999999999888776555543
No 80
>PF11745 DUF3304: Protein of unknown function (DUF3304); InterPro: IPR021733 This is a family of bacterial proteins of unknown function.
Probab=26.73 E-value=33 Score=21.70 Aligned_cols=19 Identities=37% Similarity=0.688 Sum_probs=14.8
Q ss_pred CCcEEcccCCCCCCccccH
Q 033710 85 LGRICLDILKDKWSPALQI 103 (113)
Q Consensus 85 ~G~icl~~l~~~W~p~~~i 103 (113)
.|..|.-.+.++|+|.+++
T Consensus 50 Gg~~CC~~~p~~W~pg~tv 68 (118)
T PF11745_consen 50 GGFTCCVSLPRKWRPGLTV 68 (118)
T ss_pred CceEEEEEcCCCCCCCCEE
Confidence 4566887888899998865
No 81
>PF04314 DUF461: Protein of unknown function (DUF461); InterPro: IPR007410 This entry represents a domain found in of proteins of unknown function, including DR1885 from Deinococcus radiodurans and CC3502 from Caulobacter crescentus (Caulobacter vibrioides), which share a potential metal binding motif H(M)X10MX21HXM. DR1885 was found to bind copper(I) through a histidine and three Mets in a cupredoxin-like fold []. The surface location of the copper-binding site as well as the type of coordination are well poised for metal transfer chemistry, suggesting that DR1885 might transfer copper, taking the role of Cox17 in bacteria (Cox17 being an accessory protein required for correct assembly of eukaryotic cyochrome c oxidase). ; PDB: 2K6W_A 2K6Z_A 2K6Y_A 2K70_A 1X9L_A 2JQA_A.
Probab=25.54 E-value=92 Score=19.22 Aligned_cols=27 Identities=19% Similarity=0.390 Sum_probs=21.3
Q ss_pred EEEEEEEcCCCCCCCCCEEEEEEeCCC
Q 033710 36 YFNVMILGPTQSPYEGGVFKLELFLPE 62 (113)
Q Consensus 36 ~w~~~i~gp~~t~y~g~~f~~~i~f~~ 62 (113)
-+++.+.|++..+=+|..+.+++.|-+
T Consensus 77 g~HlmL~g~~~~l~~G~~v~ltL~f~~ 103 (110)
T PF04314_consen 77 GYHLMLMGLKRPLKPGDTVPLTLTFED 103 (110)
T ss_dssp CCEEEEECESS-B-TTEEEEEEEEETT
T ss_pred CEEEEEeCCcccCCCCCEEEEEEEECC
Confidence 368889999988999999999998864
No 82
>COG1853 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family [General function prediction only]
Probab=25.37 E-value=49 Score=22.18 Aligned_cols=29 Identities=24% Similarity=0.459 Sum_probs=23.3
Q ss_pred CCCeEEEecc---CccceeeCCCcEEcccCCC
Q 033710 67 AAPKVRFLTK---IYHPNIDKLGRICLDILKD 95 (113)
Q Consensus 67 ~pP~v~f~t~---i~HPnv~~~G~icl~~l~~ 95 (113)
+||.|.+.-. --++++..+|.++++++.+
T Consensus 45 ~PP~v~v~v~~~~~t~~~i~~~~~F~vNvl~~ 76 (176)
T COG1853 45 EPPLVLVCVNKSSDTWPNIEETGEFVVNVLSE 76 (176)
T ss_pred CCCEEEEEecCCcchhhhhhhcCEEEEEeCCH
Confidence 6899888643 4578899999999999863
No 83
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=25.13 E-value=79 Score=19.75 Aligned_cols=20 Identities=30% Similarity=0.639 Sum_probs=16.3
Q ss_pred EEEEEEEcCCCCCCCCCEEEEE
Q 033710 36 YFNVMILGPTQSPYEGGVFKLE 57 (113)
Q Consensus 36 ~w~~~i~gp~~t~y~g~~f~~~ 57 (113)
.|.|.+=| +..|+|..|+|.
T Consensus 2 kWkC~iCg--~~I~~gqlFTF~ 21 (101)
T PF09943_consen 2 KWKCYICG--KPIYEGQLFTFT 21 (101)
T ss_pred ceEEEecC--CeeeecceEEEe
Confidence 69999874 559999999974
No 84
>PRK00396 rnpA ribonuclease P; Reviewed
Probab=24.68 E-value=1e+02 Score=19.96 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHhcCCCCCeE
Q 033710 6 LPRRIIKETQRLLSEPAPGIS 26 (113)
Q Consensus 6 ~~~RL~~E~~~l~~~~~~gi~ 26 (113)
+.||+.+|.-.+.+...+|+.
T Consensus 65 RiKR~lRE~fR~~~~~l~g~D 85 (130)
T PRK00396 65 RLKRLIRESFRLNQHSLAGWD 85 (130)
T ss_pred HHHHHHHHHHHHhhccCCCee
Confidence 578999999888765545554
No 85
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=24.36 E-value=64 Score=17.78 Aligned_cols=15 Identities=40% Similarity=0.437 Sum_probs=10.7
Q ss_pred hHHHHHHHHHHHhcC
Q 033710 6 LPRRIIKETQRLLSE 20 (113)
Q Consensus 6 ~~~RL~~E~~~l~~~ 20 (113)
..||+++|+++++++
T Consensus 49 ~~~~~~k~l~~le~e 63 (68)
T PF06305_consen 49 RIRRLRKELKKLEKE 63 (68)
T ss_pred HHHHHHHHHHHHHHH
Confidence 456788888877764
No 86
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=24.12 E-value=1.5e+02 Score=22.45 Aligned_cols=39 Identities=23% Similarity=0.452 Sum_probs=27.4
Q ss_pred EEEEEEEcCCCC-CCCCCEEEEEEe---CCCCCCCCCCeEEEec
Q 033710 36 YFNVMILGPTQS-PYEGGVFKLELF---LPEEYPMAAPKVRFLT 75 (113)
Q Consensus 36 ~w~~~i~gp~~t-~y~g~~f~~~i~---f~~~YP~~pP~v~f~t 75 (113)
.|+..|.|-.++ -|++|.+++++. |..- =.+.|+|+|=.
T Consensus 198 h~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~-~qR~PriRfG~ 240 (345)
T COG3866 198 HDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNL-YQRGPRIRFGM 240 (345)
T ss_pred CCeeeeeccCCcccccCCceeEEEeccccccc-cccCCceEeeE
Confidence 578888885555 788999998876 4333 33667888853
No 87
>KOG3696 consensus Aspartyl beta-hydroxylase [Posttranslational modification, protein turnover, chaperones]
Probab=22.56 E-value=1.8e+02 Score=22.07 Aligned_cols=24 Identities=21% Similarity=0.566 Sum_probs=19.7
Q ss_pred CCCCCCCCeEEEeccCccceeeCC
Q 033710 62 EEYPMAAPKVRFLTKIYHPNIDKL 85 (113)
Q Consensus 62 ~~YP~~pP~v~f~t~i~HPnv~~~ 85 (113)
+.=+.+-|+|.|.-.+|||||-+-
T Consensus 303 dgs~eds~rvV~~V~lwhpevq~~ 326 (334)
T KOG3696|consen 303 DGSSEDSPRVVFTVDLWHPEVQPA 326 (334)
T ss_pred CCCcccCceEEEEEeccCcccccc
Confidence 445567899999999999999764
No 88
>cd03458 Catechol_intradiol_dioxygenases Catechol intradiol dioxygenases can be divided into several subgroups according to their substrate specificity for catechol, chlorocatechols and hydroxyquinols. Almost all members of this family are homodimers containing one ferric ion (Fe3+) per monomer. They belong to the intradiol dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=22.47 E-value=1.5e+02 Score=21.55 Aligned_cols=24 Identities=21% Similarity=0.641 Sum_probs=19.9
Q ss_pred CCEEEEEEeCCCCCC------------------CCCCeEEEe
Q 033710 51 GGVFKLELFLPEEYP------------------MAAPKVRFL 74 (113)
Q Consensus 51 g~~f~~~i~f~~~YP------------------~~pP~v~f~ 74 (113)
.|.|.|+-..|.-|| ..||.|+|.
T Consensus 156 ~G~y~f~Ti~P~~Ypip~dGp~g~lL~~~grh~~RpaHIHf~ 197 (256)
T cd03458 156 DGRYRFRTIRPVPYPIPPDGPTGELLEALGRHPWRPAHIHFM 197 (256)
T ss_pred CCCEEEEEECCCCccCCCCCcHHHHHHhcccCCCCCCeEEEE
Confidence 488999999998886 578998886
No 89
>PF15572 Imm26: Immunity protein 26
Probab=22.33 E-value=1.1e+02 Score=18.96 Aligned_cols=26 Identities=27% Similarity=0.625 Sum_probs=16.4
Q ss_pred CCCCCCCCCEEEEEEeCCCCCCCCCCeEEEe
Q 033710 44 PTQSPYEGGVFKLELFLPEEYPMAAPKVRFL 74 (113)
Q Consensus 44 p~~t~y~g~~f~~~i~f~~~YP~~pP~v~f~ 74 (113)
+++..+.|..|++ |..||++ +.|.|.
T Consensus 7 ~~~~l~rG~i~R~----~~~ypye-~~VDFm 32 (96)
T PF15572_consen 7 KEKYLWRGTIFRC----PGVYPYE-EVVDFM 32 (96)
T ss_pred CCccEecceEEEe----cccCCCc-ccEEEE
Confidence 4455666766664 5558888 566664
No 90
>PF14824 Sirohm_synth_M: Sirohaem biosynthesis protein central; PDB: 1KYQ_B.
Probab=22.07 E-value=75 Score=15.29 Aligned_cols=13 Identities=54% Similarity=0.649 Sum_probs=8.7
Q ss_pred chHHHHHHHHHHH
Q 033710 5 NLPRRIIKETQRL 17 (113)
Q Consensus 5 ~~~~RL~~E~~~l 17 (113)
...++|.+|+++.
T Consensus 17 ~la~~iR~~ie~~ 29 (30)
T PF14824_consen 17 RLARLIRKEIERL 29 (30)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 3467788887654
No 91
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=21.95 E-value=1.5e+02 Score=18.63 Aligned_cols=20 Identities=25% Similarity=0.365 Sum_probs=15.2
Q ss_pred CCCchHHHHHHHHHHHhcCC
Q 033710 2 ANSNLPRRIIKETQRLLSEP 21 (113)
Q Consensus 2 a~~~~~~RL~~E~~~l~~~~ 21 (113)
.++...+||.++++++.+..
T Consensus 2 G~S~~~~~l~~~l~~~a~~~ 21 (138)
T PF14532_consen 2 GKSPAMRRLRRQLERLAKSS 21 (138)
T ss_dssp -SCHHHHHHHHHHHHHHCSS
T ss_pred CCCHHHHHHHHHHHHHhCCC
Confidence 35677899999999997643
No 92
>PF08872 KGK: KGK domain; InterPro: IPR014971 This protein is found in one or two copies in cyanobacterial proteins. It is named after a short sequence motif.
Probab=21.59 E-value=1.9e+02 Score=18.33 Aligned_cols=27 Identities=19% Similarity=0.262 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCCCCCEEEE--EEeCCCCCCCC
Q 033710 38 NVMILGPTQSPYEGGVFKL--ELFLPEEYPMA 67 (113)
Q Consensus 38 ~~~i~gp~~t~y~g~~f~~--~i~f~~~YP~~ 67 (113)
.|-|..+...-|..|.+++ .+.| ||.+
T Consensus 68 ~CeiL~~g~~~W~kGK~ri~~~leF---~pde 96 (114)
T PF08872_consen 68 ECEILRFGSKGWQKGKVRIKVSLEF---IPDE 96 (114)
T ss_pred eEEEeccCCCCCccceEEEEEEEEE---ecCC
Confidence 5667667777899999999 7777 5544
No 93
>PF02970 TBCA: Tubulin binding cofactor A; InterPro: IPR004226 The folding pathway of tubulins includes highly specific interactions with a series of cofactors (A, B, C, D and E) after they are released from the eukaryotic chaperonin CCT. Cofactors A and D capture and stabilise tubulin in a quasi-native conformation. Cofactor E binds to the cofactor D-tubulin complex, and interaction with cofactor C then causes the release of tubulin poypeptides in the native state. This family is the tubulin-specific chaperone A.; GO: 0051082 unfolded protein binding, 0007021 tubulin complex assembly, 0005874 microtubule; PDB: 3MXZ_A 1QSD_A 1H7C_A.
Probab=21.29 E-value=82 Score=18.96 Aligned_cols=15 Identities=20% Similarity=0.379 Sum_probs=11.3
Q ss_pred chHHHHHHHHHHHhc
Q 033710 5 NLPRRIIKETQRLLS 19 (113)
Q Consensus 5 ~~~~RL~~E~~~l~~ 19 (113)
++.+||.||.....+
T Consensus 7 ~~vkRL~KE~~~Y~k 21 (90)
T PF02970_consen 7 GVVKRLLKEEASYEK 21 (90)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 467899999876654
No 94
>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]
Probab=20.83 E-value=1.4e+02 Score=25.38 Aligned_cols=59 Identities=22% Similarity=0.314 Sum_probs=37.6
Q ss_pred EEEeCCCCCcEEEEEEEcCCCCCCCCCEEEEEEeCCCCCCC-CCCeEEEec--cCccc-eeeCCCcEEc
Q 033710 26 SASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPM-AAPKVRFLT--KIYHP-NIDKLGRICL 90 (113)
Q Consensus 26 ~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~f~~~YP~-~pP~v~f~t--~i~HP-nv~~~G~icl 90 (113)
-|.-.+.++-+..+.+. |||..|+.+|....+=-. .--..+|.| ...|. .+-.||-||.
T Consensus 177 LVRESEsSpgQ~sISlR------yeGRVyHYRINt~~dgK~yvt~EsrF~TLaELVHHHStvADGLitt 239 (1157)
T KOG4278|consen 177 LVRESESSPGQYSISLR------YEGRVYHYRINTDNDGKMYVTQESRFRTLAELVHHHSTVADGLITT 239 (1157)
T ss_pred EEeeccCCCcceeEEEE------ecceEEEEEeeccCCccEEEeehhhhhHHHHHHhhccccccceeEe
Confidence 35556777777777776 999999999988654221 112233333 23444 4567999984
No 95
>COG2847 Copper(I)-binding protein [Inorganic ion transport and metabolism]
Probab=20.82 E-value=2e+02 Score=19.33 Aligned_cols=28 Identities=21% Similarity=0.367 Sum_probs=23.9
Q ss_pred EEEEEEEcCCCCCCCCCEEEEEEeCCCC
Q 033710 36 YFNVMILGPTQSPYEGGVFKLELFLPEE 63 (113)
Q Consensus 36 ~w~~~i~gp~~t~y~g~~f~~~i~f~~~ 63 (113)
-+++.+.|++...-+|..|.+++.|-+.
T Consensus 104 gyHvMlm~lK~pl~eGd~v~vtL~f~~~ 131 (151)
T COG2847 104 GYHVMLMGLKKPLKEGDKVPVTLKFEKA 131 (151)
T ss_pred CEEEEEeccCCCccCCCEEEEEEEEecC
Confidence 3678899999999999999999998653
No 96
>PF09606 Med15: ARC105 or Med15 subunit of Mediator complex non-fungal; InterPro: IPR019087 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. The proteins in this entry represent subunit Med15 of the Mediator complex. They contain a single copy of the approximately 70 residue ARC105 domain. The ARC105 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, ARC105 is a critical transducer of gene activation signals that control early metazoan development []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 2GUT_A.
Probab=20.18 E-value=34 Score=28.98 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=0.0
Q ss_pred EEEEEeCCCCCCCCCCeEEEec
Q 033710 54 FKLELFLPEEYPMAAPKVRFLT 75 (113)
Q Consensus 54 f~~~i~f~~~YP~~pP~v~f~t 75 (113)
=-++|.+|+|||..+|.+.+.+
T Consensus 716 PPl~l~vP~~YP~~sp~~~~~~ 737 (799)
T PF09606_consen 716 PPLRLTVPADYPRQSPQCSVDR 737 (799)
T ss_dssp ----------------------
T ss_pred CCeeEeCCCCCCccCCcCcccH
Confidence 3578899999999999987754
No 97
>PRK04390 rnpA ribonuclease P; Reviewed
Probab=20.10 E-value=1.3e+02 Score=18.95 Aligned_cols=20 Identities=30% Similarity=0.428 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHhcCCCCCe
Q 033710 6 LPRRIIKETQRLLSEPAPGI 25 (113)
Q Consensus 6 ~~~RL~~E~~~l~~~~~~gi 25 (113)
..||+.+|.-.+.+...+|.
T Consensus 63 RiKR~lRE~~R~~~~~l~~~ 82 (120)
T PRK04390 63 YMKRVIREWFRLNQHRLPPV 82 (120)
T ss_pred HHHHHHHHHHHhccccCCCc
Confidence 56899999887765444443
Done!