Query 033711
Match_columns 113
No_of_seqs 131 out of 846
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 05:24:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033711.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033711hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01160 SUI1_MOF2 translatio 100.0 4.9E-37 1.1E-41 214.0 11.6 108 4-113 2-110 (110)
2 KOG1770 Translation initiation 100.0 9E-37 2E-41 210.0 10.6 111 1-113 1-112 (112)
3 COG0023 SUI1 Translation initi 100.0 4.1E-29 8.9E-34 172.5 9.7 93 12-111 11-104 (104)
4 cd00474 SUI1_eIF1 The SUI1/eIF 100.0 6.2E-29 1.3E-33 163.6 8.8 76 30-111 1-77 (77)
5 PF01253 SUI1: Translation ini 99.9 2.3E-27 5E-32 157.1 9.5 81 25-105 1-82 (83)
6 PRK00939 translation initiatio 99.9 4.5E-26 9.8E-31 156.3 9.2 78 25-108 20-98 (99)
7 TIGR01158 SUI1_rel translation 99.9 2.1E-24 4.6E-29 148.4 9.5 75 25-104 20-96 (101)
8 TIGR01159 DRP1 density-regulat 99.9 1.7E-24 3.7E-29 161.1 9.2 84 25-109 85-171 (173)
9 PRK09019 translation initiatio 99.9 2.2E-23 4.8E-28 144.9 9.8 75 24-103 26-102 (108)
10 PRK07451 translation initiatio 99.9 3.4E-23 7.4E-28 145.3 10.1 75 24-103 33-109 (115)
11 PRK06824 translation initiatio 99.9 4E-23 8.7E-28 145.6 9.3 74 26-104 38-113 (118)
12 KOG3239 Density-regulated prot 99.7 8.3E-18 1.8E-22 125.2 7.5 84 26-110 98-184 (193)
13 KOG2522 Filamentous baseplate 99.7 1E-16 2.3E-21 133.4 7.8 97 11-108 445-548 (560)
14 PF05046 Img2: Mitochondrial l 98.2 1.3E-05 2.9E-10 53.5 8.7 70 28-102 11-87 (87)
15 KOG4034 Uncharacterized conser 96.8 0.0035 7.6E-08 46.6 5.6 69 30-102 95-169 (169)
16 PRK14451 acylphosphatase; Prov 93.9 0.29 6.3E-06 32.5 6.1 52 47-98 9-62 (89)
17 PRK03988 translation initiatio 93.3 0.24 5.2E-06 35.8 5.2 57 29-95 31-92 (138)
18 PRK14434 acylphosphatase; Prov 93.3 0.48 1E-05 31.7 6.4 63 46-108 7-72 (92)
19 PRK14443 acylphosphatase; Prov 92.7 0.48 1E-05 31.9 5.8 56 47-103 10-67 (93)
20 PRK14426 acylphosphatase; Prov 92.2 0.73 1.6E-05 30.7 6.1 61 47-108 10-72 (92)
21 TIGR00311 aIF-2beta translatio 92.1 0.45 9.8E-06 34.2 5.3 58 28-95 25-87 (133)
22 PRK14450 acylphosphatase; Prov 92.1 0.85 1.9E-05 30.2 6.3 55 46-101 7-64 (91)
23 PRK14444 acylphosphatase; Prov 91.9 0.97 2.1E-05 30.2 6.5 53 46-99 9-61 (92)
24 PRK14420 acylphosphatase; Prov 91.4 1.1 2.3E-05 29.7 6.2 59 47-107 8-68 (91)
25 smart00653 eIF2B_5 domain pres 90.6 0.88 1.9E-05 31.6 5.4 61 30-98 8-74 (110)
26 PRK14432 acylphosphatase; Prov 90.5 1.7 3.6E-05 29.2 6.5 61 46-108 7-70 (93)
27 PRK14422 acylphosphatase; Prov 90.4 1.8 3.9E-05 28.9 6.7 60 46-107 11-72 (93)
28 PRK14429 acylphosphatase; Prov 90.3 1.4 3E-05 29.2 6.0 59 47-107 8-68 (90)
29 PRK14433 acylphosphatase; Prov 89.3 1.8 4E-05 28.5 5.9 53 46-99 6-58 (87)
30 PRK14439 acylphosphatase; Prov 89.2 1.8 4E-05 32.2 6.4 57 45-101 79-137 (163)
31 PRK14437 acylphosphatase; Prov 89.0 2.1 4.5E-05 29.6 6.2 52 47-98 29-82 (109)
32 PRK14435 acylphosphatase; Prov 88.8 2.1 4.5E-05 28.4 5.9 52 47-99 8-59 (90)
33 PRK14431 acylphosphatase; Prov 88.8 2.2 4.7E-05 28.4 6.0 60 47-108 8-69 (89)
34 PRK14427 acylphosphatase; Prov 88.5 2.1 4.5E-05 28.7 5.8 59 48-108 13-73 (94)
35 PRK14425 acylphosphatase; Prov 88.5 1.9 4.1E-05 28.9 5.6 51 48-98 13-65 (94)
36 PRK14448 acylphosphatase; Prov 88.4 3 6.5E-05 27.6 6.5 53 46-98 7-61 (90)
37 PRK14428 acylphosphatase; Prov 88.0 2.9 6.3E-05 28.4 6.3 53 46-99 13-65 (97)
38 PRK14423 acylphosphatase; Prov 87.8 2.7 5.8E-05 28.0 6.0 52 47-99 11-62 (92)
39 PRK14442 acylphosphatase; Prov 87.3 3.3 7.1E-05 27.5 6.2 50 47-97 10-59 (91)
40 PRK12336 translation initiatio 87.1 1.9 4.1E-05 32.7 5.5 62 28-99 26-93 (201)
41 PRK14440 acylphosphatase; Prov 87.1 3.6 7.7E-05 27.3 6.2 52 47-99 9-60 (90)
42 PRK14452 acylphosphatase; Prov 86.9 4.5 9.7E-05 27.9 6.8 51 46-97 25-75 (107)
43 PRK14445 acylphosphatase; Prov 86.8 2.6 5.7E-05 27.9 5.5 52 47-98 10-63 (91)
44 PRK14436 acylphosphatase; Prov 86.5 4.1 8.9E-05 27.1 6.3 52 47-99 10-61 (91)
45 PRK14446 acylphosphatase; Prov 86.0 3.1 6.7E-05 27.7 5.5 53 46-99 7-59 (88)
46 PRK14424 acylphosphatase; Prov 85.8 5 0.00011 26.9 6.5 53 46-98 12-66 (94)
47 PRK14421 acylphosphatase; Prov 85.6 4 8.6E-05 27.8 6.0 52 47-98 10-63 (99)
48 PRK14449 acylphosphatase; Prov 85.2 4 8.6E-05 27.0 5.7 52 47-99 9-60 (90)
49 PRK14438 acylphosphatase; Prov 85.1 4.1 8.8E-05 27.0 5.8 53 46-99 8-60 (91)
50 PF01873 eIF-5_eIF-2B: Domain 84.3 2 4.3E-05 30.5 4.1 66 26-99 17-88 (125)
51 PRK14447 acylphosphatase; Prov 84.2 4.9 0.00011 26.9 5.9 53 46-99 9-62 (95)
52 PRK14441 acylphosphatase; Prov 83.8 5.7 0.00012 26.4 6.0 52 47-98 11-64 (93)
53 PF00708 Acylphosphatase: Acyl 83.2 5.4 0.00012 26.0 5.7 53 46-99 9-61 (91)
54 PRK14430 acylphosphatase; Prov 81.9 8.1 0.00018 25.7 6.2 51 47-97 10-62 (92)
55 COG1254 AcyP Acylphosphatases 72.6 26 0.00056 23.5 6.6 52 47-99 10-61 (92)
56 TIGR02433 lysidine_TilS_C tRNA 59.4 12 0.00026 21.1 2.6 27 79-105 8-35 (47)
57 PF11388 DotA: Phagosome traff 56.1 6.9 0.00015 27.0 1.3 26 47-74 4-30 (105)
58 PRK05412 putative nucleotide-b 53.4 26 0.00057 26.1 4.1 55 42-102 92-150 (161)
59 COG1601 GCD7 Translation initi 46.5 35 0.00075 25.1 3.8 53 43-99 42-100 (151)
60 PF00691 OmpA: OmpA family; I 45.6 14 0.00031 23.5 1.5 22 90-112 56-77 (97)
61 PF00381 PTS-HPr: PTS HPr comp 44.5 71 0.0015 20.2 4.7 48 43-99 32-79 (84)
62 cd04885 ACT_ThrD-I Tandem C-te 44.1 36 0.00077 20.6 3.1 22 82-103 43-65 (68)
63 PRK10897 phosphohistidinoprote 39.8 1.1E+02 0.0024 20.1 6.2 40 52-99 42-81 (90)
64 COG3317 NlpB Uncharacterized l 38.4 2E+02 0.0043 24.0 7.4 87 24-111 162-269 (342)
65 cd04906 ACT_ThrD-I_1 First of 35.5 47 0.001 21.2 2.8 21 82-102 45-67 (85)
66 TIGR02802 Pal_lipo peptidoglyc 35.4 22 0.00049 23.2 1.3 23 90-113 57-79 (104)
67 cd02394 vigilin_like_KH K homo 32.3 1.1E+02 0.0023 17.9 4.1 35 61-96 23-57 (62)
68 KOG0436 Methionyl-tRNA synthet 31.9 31 0.00067 30.0 1.8 33 81-113 300-337 (578)
69 PHA02450 hypothetical protein 31.1 23 0.0005 21.4 0.7 9 9-17 31-39 (53)
70 PF10281 Ish1: Putative stress 30.8 56 0.0012 17.9 2.2 17 91-107 7-23 (38)
71 PF04461 DUF520: Protein of un 30.0 1.3E+02 0.0027 22.5 4.6 56 41-102 91-150 (160)
72 PF05172 Nup35_RRM: Nup53/35/4 29.6 1.6E+02 0.0034 19.9 4.7 59 42-105 7-79 (100)
73 PF15538 Toxin_61: Putative to 29.5 47 0.001 24.7 2.2 37 62-105 4-40 (157)
74 PRK15427 colanic acid biosynth 28.9 3.1E+02 0.0068 22.2 7.3 63 43-113 224-286 (406)
75 PRK10560 hofQ outer membrane p 27.9 2.1E+02 0.0046 23.4 6.0 57 53-111 100-158 (386)
76 PRK10530 pyridoxal phosphate ( 27.6 2.1E+02 0.0045 21.2 5.6 62 40-102 35-102 (272)
77 TIGR03704 PrmC_rel_meth putati 27.4 2.4E+02 0.0052 21.6 6.0 46 56-111 195-240 (251)
78 PF11734 TilS_C: TilS substrat 27.1 31 0.00066 21.7 0.8 26 79-104 8-34 (74)
79 cd01026 TOPRIM_OLD TOPRIM_OLD: 27.0 1.7E+02 0.0036 18.8 4.4 54 42-103 4-57 (97)
80 PF03958 Secretin_N: Bacterial 26.4 1.6E+02 0.0035 17.9 4.8 46 54-100 9-76 (82)
81 PRK13434 F0F1 ATP synthase sub 26.3 1.3E+02 0.0028 22.0 4.1 49 38-86 101-154 (184)
82 PF06918 DUF1280: Protein of u 26.2 1.7E+02 0.0036 22.7 4.8 80 11-90 82-170 (224)
83 PF04739 AMPKBI: 5'-AMP-activa 26.1 1.2E+02 0.0026 20.6 3.7 20 28-47 76-95 (100)
84 PF11608 Limkain-b1: Limkain b 25.4 2.2E+02 0.0048 19.3 5.3 34 43-76 3-37 (90)
85 PRK10076 pyruvate formate lyas 25.0 85 0.0018 23.8 3.0 45 54-102 19-68 (213)
86 PF14527 LAGLIDADG_WhiA: WhiA 24.8 79 0.0017 20.9 2.5 40 63-103 5-47 (93)
87 PRK13780 phosphocarrier protei 24.5 2.1E+02 0.0045 18.6 5.6 42 53-102 41-86 (88)
88 PF00013 KH_1: KH domain syndr 24.3 1.4E+02 0.0031 17.2 3.4 36 59-96 21-56 (60)
89 PF01207 Dus: Dihydrouridine s 24.3 1.3E+02 0.0029 23.8 4.2 46 56-112 110-159 (309)
90 KOG2281 Dipeptidyl aminopeptid 24.1 1E+02 0.0022 28.4 3.7 31 82-113 704-734 (867)
91 KOG0005 Ubiquitin-like protein 24.1 54 0.0012 20.9 1.4 28 80-107 10-41 (70)
92 cd00367 PTS-HPr_like Histidine 23.6 1.9E+02 0.0041 17.8 5.9 49 42-99 27-75 (77)
93 PF12221 HflK_N: Bacterial mem 23.5 62 0.0013 18.8 1.6 16 53-68 20-35 (42)
94 PRK13430 F0F1 ATP synthase sub 23.5 1.8E+02 0.004 22.8 4.8 49 38-86 197-250 (271)
95 PF06753 Bradykinin: Bradykini 23.4 52 0.0011 15.9 1.0 12 9-20 5-16 (19)
96 PF06925 MGDG_synth: Monogalac 23.2 73 0.0016 22.6 2.2 23 90-113 145-167 (169)
97 COG2885 OmpA Outer membrane pr 23.1 78 0.0017 23.0 2.4 22 91-113 141-162 (190)
98 COG2080 CoxS Aerobic-type carb 23.1 78 0.0017 23.5 2.4 28 41-68 69-97 (156)
99 PF08869 XisI: XisI protein; 23.0 63 0.0014 22.6 1.8 29 81-110 66-95 (111)
100 PF06183 DinI: DinI-like famil 22.3 2.1E+02 0.0045 17.8 4.4 43 56-99 10-55 (65)
101 PRK05177 minC septum formation 22.2 2.9E+02 0.0062 21.3 5.5 59 40-102 15-78 (239)
102 PF04468 PSP1: PSP1 C-terminal 22.1 1.4E+02 0.003 19.5 3.2 36 34-69 46-81 (88)
103 PRK12866 YciI-like protein; Re 22.0 1.6E+02 0.0036 19.5 3.7 33 67-100 37-69 (97)
104 TIGR03676 aRF1/eRF1 peptide ch 21.9 1.5E+02 0.0033 24.8 4.2 39 55-99 4-42 (403)
105 PF15319 RHINO: RAD9, RAD1, HU 21.8 71 0.0015 25.2 2.0 36 75-110 201-236 (236)
106 PHA00019 IV phage assembly pro 21.8 3.8E+02 0.0082 22.3 6.5 64 44-110 132-201 (428)
107 TIGR03321 alt_F1F0_F0_B altern 21.7 3.5E+02 0.0077 20.6 5.9 45 41-85 176-225 (246)
108 PF11823 DUF3343: Protein of u 21.5 1.3E+02 0.0028 18.6 2.9 24 81-104 43-66 (73)
109 cd07185 OmpA_C-like Peptidogly 21.4 59 0.0013 20.6 1.4 21 91-112 60-80 (106)
110 PF13014 KH_3: KH domain 21.3 1.5E+02 0.0032 16.2 2.9 28 60-87 13-43 (43)
111 PF05190 MutS_IV: MutS family 21.2 1.8E+02 0.0039 17.9 3.6 39 55-93 19-58 (92)
112 cd01796 DDI1_N DNA damage indu 20.7 2.1E+02 0.0047 17.4 3.8 22 82-103 41-62 (71)
113 KOG1143 Predicted translation 20.6 2.5E+02 0.0054 24.5 5.2 47 60-110 122-168 (591)
114 cd04909 ACT_PDH-BS C-terminal 20.5 1.2E+02 0.0027 17.7 2.6 22 82-103 46-68 (69)
115 PRK10802 peptidoglycan-associa 20.5 55 0.0012 24.1 1.1 23 90-113 126-148 (173)
116 cd04908 ACT_Bt0572_1 N-termina 20.4 1.3E+02 0.0028 17.8 2.7 45 55-102 14-62 (66)
117 PRK01530 hypothetical protein; 20.3 3E+02 0.0065 18.9 5.5 72 28-99 13-102 (105)
No 1
>TIGR01160 SUI1_MOF2 translation initiation factor SUI1, eukaryotic. Alternate name: MOF2. A similar protein family (see TIGRFAMs model TIGR01158) is found in prokaryotes. The human proteins complements a yeast SUI1 mutatation.
Probab=100.00 E-value=4.9e-37 Score=213.96 Aligned_cols=108 Identities=64% Similarity=1.079 Sum_probs=97.3
Q ss_pred ccccCCCCCCccccccccCCCC-CCcceEEEEEEEecCCeeEEEEeCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeE
Q 033711 4 FDIQVPAAFDPFADAKAEDSGA-GSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQV 82 (113)
Q Consensus 4 ~~~~~~~~fdp~~~~~~~~~~~-~~~~~I~I~~e~R~g~K~VT~V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~ 82 (113)
++++. .||||.++..++.-. .....|||++++|+|||.||+|+||+..+||++|||.||++|||||||+++++++++
T Consensus 2 ~~~~~--~~dpf~d~~~~~~~~~~~~~~I~Iri~qR~grK~VTiI~Gl~~~~dlk~l~K~lKkk~~cGGsVk~~~~~~~~ 79 (110)
T TIGR01160 2 IQNLK--SFDPFADAGDDDSALPGTSNYIHIRIQQRNGRKTLTTVQGLPKEYDLKKIVKALKKEFACNGTVIEDPEMGEV 79 (110)
T ss_pred ccccc--CCCCccccccccccccCccceEEEEEEEccCCccEEEEeccCChHHHHHHHHHHHHHhCCCceEEeCCCCCCE
Confidence 45655 589999986554322 467789999999999999999999998889999999999999999999998888889
Q ss_pred EEEcCChhHHHHHHHHHcCCCCCCCeeecCC
Q 033711 83 IQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 113 (113)
Q Consensus 83 I~lQGD~~~~i~~~L~~~G~~~~~~I~ihg~ 113 (113)
|+||||||++|++||.++||.+++||+||||
T Consensus 80 IelQGD~re~v~~~L~~~g~~~~~~i~vhg~ 110 (110)
T TIGR01160 80 IQLQGDQRKNVCEFLISQGLLKKDQIKIHGF 110 (110)
T ss_pred EEEeCcHHHHHHHHHHHcCCCCHHHeeecCC
Confidence 9999999999999999999999999999997
No 2
>KOG1770 consensus Translation initiation factor 1 (eIF-1/SUI1) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9e-37 Score=210.04 Aligned_cols=111 Identities=65% Similarity=1.024 Sum_probs=103.8
Q ss_pred CCcccccCCCCCCccccccccCC-CCCCcceEEEEEEEecCCeeEEEEeCCCCcccHHHHHHHHhhhcccccEEEeCCCC
Q 033711 1 MSDFDIQVPAAFDPFADAKAEDS-GAGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPEL 79 (113)
Q Consensus 1 ~~~~~~~~~~~fdp~~~~~~~~~-~~~~~~~I~I~~e~R~g~K~VT~V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~ 79 (113)
|+.++++. +||||+++.++++ ..+....||||+++|+|||++|+|+||+.++|++.+++.|||.|||+|+|.++|+.
T Consensus 1 e~~iq~~~--~~dpfad~~~~~~~~~g~~~~ihIRIQQRnGrKtlTtVQgi~~Eyd~kril~~lKKef~CnGtvved~e~ 78 (112)
T KOG1770|consen 1 EHIIQNLE--DFDPFADARAGEDDIAGTEKYIHIRIQQRNGRKTLTTVQGIPMEYDLKKILKSLKKEFACNGTVVEDPEY 78 (112)
T ss_pred Cccccchh--hcCcccccccccccccCccceEEEEEEeeCCceEEEEecCChhhhhHHHHHHHHHHhccCCCeEecCccc
Confidence 56777755 7999999988733 67888899999999999999999999998899999999999999999999999999
Q ss_pred CeEEEEcCChhHHHHHHHHHcCCCCCCCeeecCC
Q 033711 80 GQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 113 (113)
Q Consensus 80 g~~I~lQGD~~~~i~~~L~~~G~~~~~~I~ihg~ 113 (113)
|++||||||||.++.+||...|+.++.||.||||
T Consensus 79 gevIQLqGDqR~nv~~fl~~~g~~k~~~ikihGf 112 (112)
T KOG1770|consen 79 GEVIQLQGDQRKNVCQFLVQVGLVKKDNIKIHGF 112 (112)
T ss_pred CceEEeccchhhhHHHHHHHhccccccceeecCC
Confidence 9999999999999999999999999999999998
No 3
>COG0023 SUI1 Translation initiation factor 1 (eIF-1/SUI1) and related proteins [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=4.1e-29 Score=172.47 Aligned_cols=93 Identities=31% Similarity=0.513 Sum_probs=81.3
Q ss_pred CCccccccccCCCCCCcceEEEEEEEecCCeeEEEEeCCC-CcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChh
Q 033711 12 FDPFADAKAEDSGAGSKEYVHIRVQQRNGRKSLTTVQGLK-KEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQR 90 (113)
Q Consensus 12 fdp~~~~~~~~~~~~~~~~I~I~~e~R~g~K~VT~V~Gl~-~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~ 90 (113)
.+|.+.... +..+...+.|+|++++|++||.||+|+||+ +++|+++||+.||++|||||||++ .+|+||||||
T Consensus 11 ~~p~e~~~~-~~~k~~~~~V~I~~e~rr~gK~VTiI~Gld~~~~dlk~Lak~LKk~cacGGtvk~-----~~IeiQGdhr 84 (104)
T COG0023 11 GLPKELTCE-EVAKEGDQIVRIRRETRRKGKTVTIIEGLDLKDIDLKKLAKELKKKCACGGTVKD-----GEIEIQGDHR 84 (104)
T ss_pred CCchHHhhh-hcccccCCeEEEEEEeecCCcEEEEEeCcccchhhHHHHHHHHHHHcCCCceecC-----CEEEEeChHH
Confidence 566665412 223445899999999999999999999999 899999999999999999999986 4999999999
Q ss_pred HHHHHHHHHcCCCCCCCeeec
Q 033711 91 KNVSTFLVQAGIVKKEHIKMH 111 (113)
Q Consensus 91 ~~i~~~L~~~G~~~~~~I~ih 111 (113)
++|.++|.++|| ++++|.+|
T Consensus 85 ~~v~~~L~~~G~-k~k~i~~~ 104 (104)
T COG0023 85 DKVKELLIKKGF-KVKNIGIE 104 (104)
T ss_pred HHHHHHHHHcCC-chhhcccC
Confidence 999999999999 77888775
No 4
>cd00474 SUI1_eIF1 The SUI1/eIF1 (eukaryotic initiation factor 1) fold is found in eukaryotes, archaea, and some bacteria and is thought to play an important role in accurate initiator codon recognition during translation initiation. This fold, which includes two antiparallel alpha helices packed against the same side of a five-strand beta sheet, is structurally similar to other RNA-binding domains suggesting that SUI1/eIF1 may bind RNA. Point mutations in the yeast eIF1 implicate the protein in maintaining accurate start-site selection but its mechanism of action is unknown.
Probab=99.96 E-value=6.2e-29 Score=163.56 Aligned_cols=76 Identities=53% Similarity=0.854 Sum_probs=72.3
Q ss_pred eEEEEEEEecCCeeEEEEeCCC-CcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHHcCCCCCCCe
Q 033711 30 YVHIRVQQRNGRKSLTTVQGLK-KEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHI 108 (113)
Q Consensus 30 ~I~I~~e~R~g~K~VT~V~Gl~-~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i~~~L~~~G~~~~~~I 108 (113)
.|+|++++|++||.||+|+||+ +.+|++++||.||++|||||||++ .+|+||||||++|+++|.++||+. +||
T Consensus 1 ~V~I~~e~R~~~K~VT~I~Gl~~~~~dlk~l~k~lKk~~~cggtv~~-----~~I~lQGD~r~~v~~~L~~~g~~~-~~i 74 (77)
T cd00474 1 VVRIRIQQRNGGKTVTTVQGLDLEYADLKKLAKELKKKCACGGTVKD-----EVIELQGDQRKKIKEFLIKMGFAK-DNI 74 (77)
T ss_pred CEEEEEEECCCCccEEEEECCCCchHhHHHHHHHHHHHcCCCcEEec-----CEEEEeCcHHHHHHHHHHHcCCCH-HHe
Confidence 3899999999999999999999 888999999999999999999985 599999999999999999999966 999
Q ss_pred eec
Q 033711 109 KMH 111 (113)
Q Consensus 109 ~ih 111 (113)
.||
T Consensus 75 ~i~ 77 (77)
T cd00474 75 KIH 77 (77)
T ss_pred EeC
Confidence 999
No 5
>PF01253 SUI1: Translation initiation factor SUI1; InterPro: IPR001950 In Saccharomyces cerevisiae (Baker's yeast), SUI1 is a translation initiation factor that functions in concert with eIF-2 and the initiator tRNA-Met in directing the ribosome to the proper start site of translation []. SUI1 is a protein of 108 residues. Close homologs of SUI1 have been found [] in mammals, insects and plants. SUI1 is also evolutionary related to hypothetical proteins from Escherichia coli (yciH), Haemophilus influenzae (HI1225) and Methanococcus vannielii.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2OGH_A 1D1R_A 2IF1_A 2XZN_F 2XZM_F.
Probab=99.95 E-value=2.3e-27 Score=157.08 Aligned_cols=81 Identities=41% Similarity=0.720 Sum_probs=68.7
Q ss_pred CCCcceEEEEEEEecCCeeEEEEeCCC-CcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHHcCCC
Q 033711 25 AGSKEYVHIRVQQRNGRKSLTTVQGLK-KEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIV 103 (113)
Q Consensus 25 ~~~~~~I~I~~e~R~g~K~VT~V~Gl~-~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i~~~L~~~G~~ 103 (113)
+++.++|+|++++|+|||.||+|+||+ +++|+++||+.|+++|||||||.+++..+.+|+|||||+++|.++|.++|++
T Consensus 1 k~~~~~I~I~~e~r~~~K~vT~V~gl~~~~~d~~~lak~lkk~~ac~~sv~~~~~k~~~I~iQGd~~~~i~~~L~~~~~~ 80 (83)
T PF01253_consen 1 KKEPPKIHIRVEKRRGRKFVTIVSGLELFGIDLKELAKELKKKFACGGSVTKDPGKGEEIQIQGDHRDEIKDLLVEKGGI 80 (83)
T ss_dssp -S-TTCEEEEEEESSSSEEEEEEES--STTSHHHHHHHHHHHHHTS-EEEEE-TTTSSEEEEESS-HHHHHHHHHHHCSS
T ss_pred CCCCCEEEEEEEeCcCCeEEEEEECCcccccCHHHHHHHHHHhccCceEEeecCCCCCEEEECCcHHHHHHHHHHHhCCC
Confidence 367889999999999999999999999 9999999999999999999999988755789999999999999999999885
Q ss_pred CC
Q 033711 104 KK 105 (113)
Q Consensus 104 ~~ 105 (113)
++
T Consensus 81 ~k 82 (83)
T PF01253_consen 81 PK 82 (83)
T ss_dssp E-
T ss_pred CC
Confidence 54
No 6
>PRK00939 translation initiation factor Sui1; Reviewed
Probab=99.93 E-value=4.5e-26 Score=156.29 Aligned_cols=78 Identities=33% Similarity=0.638 Sum_probs=71.9
Q ss_pred CCCcceEEEEEEEecCCeeEEEEeCCC-CcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHHcCCC
Q 033711 25 AGSKEYVHIRVQQRNGRKSLTTVQGLK-KEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIV 103 (113)
Q Consensus 25 ~~~~~~I~I~~e~R~g~K~VT~V~Gl~-~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i~~~L~~~G~~ 103 (113)
+...+.|+|++++|+|||.||+|+||+ +++|+++|+|.||++|||||||++ ++|+||||||++|++||.++||
T Consensus 20 ~~~~~~i~I~~ekr~~gK~VTiI~Gl~~~~~~lk~l~k~lKk~~gcGgsvk~-----~~I~iQGD~r~~v~~~L~~~G~- 93 (99)
T PRK00939 20 AKEQQRIKIKVDKRRYGKEVTIIEGIDPKDIDLKELAKKLKSKLACGGTVKD-----GRIELQGDHRERVKELLIKMGF- 93 (99)
T ss_pred CccCceEEEEEEecCCCceEEEEeCCCCcchhHHHHHHHHHHHhCCCceEEC-----CEEEEeCcHHHHHHHHHHHcCC-
Confidence 345689999999999999999999999 999999999999999999999974 4799999999999999999999
Q ss_pred CCCCe
Q 033711 104 KKEHI 108 (113)
Q Consensus 104 ~~~~I 108 (113)
+.+||
T Consensus 94 ~~~~i 98 (99)
T PRK00939 94 SEENI 98 (99)
T ss_pred Chhhc
Confidence 56666
No 7
>TIGR01158 SUI1_rel translation initation factor SUI1, putative, prokaryotic. This family of archaeal and bacterial proteins is homologous to the eukaryotic translation intiation factor SUI1 involved in directing the ribosome to the proper start site of translation by functioning in concert with eIF-2 and the initiator tRNA-Met.
Probab=99.91 E-value=2.1e-24 Score=148.38 Aligned_cols=75 Identities=31% Similarity=0.549 Sum_probs=70.0
Q ss_pred CCCcceEEEEEEEe-cCCeeEEEEeCCC-CcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHHcCC
Q 033711 25 AGSKEYVHIRVQQR-NGRKSLTTVQGLK-KEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGI 102 (113)
Q Consensus 25 ~~~~~~I~I~~e~R-~g~K~VT~V~Gl~-~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i~~~L~~~G~ 102 (113)
+++.+.|+|++++| +++|.||+|+||+ +.+|++++||.||++||||||+++ ++|+||||||++|.++|.++||
T Consensus 20 ~~~~~~i~i~~e~rgr~gK~VTvV~Gl~~~~~~l~~l~k~LKk~~gcGgtvk~-----~~IeiQGD~~~~v~~~L~~~G~ 94 (101)
T TIGR01158 20 PKEDQVVRIQRETRGRKGKGVTIIEGLDLSDIDLKELAKELKSKCGCGGTVKD-----GVIEIQGDHRDRVKDLLEKKGF 94 (101)
T ss_pred CCCCceEEEEEEEecCCCCEEEEEeCCcCchhhHHHHHHHHHHHhcCCeeEeC-----CEEEEeCcHHHHHHHHHHHcCC
Confidence 45789999999999 8999999999999 899999999999999999999974 5999999999999999999999
Q ss_pred CC
Q 033711 103 VK 104 (113)
Q Consensus 103 ~~ 104 (113)
+.
T Consensus 95 ~~ 96 (101)
T TIGR01158 95 KV 96 (101)
T ss_pred Ce
Confidence 53
No 8
>TIGR01159 DRP1 density-regulated protein DRP1. This protein family shows weak but suggestive similarity to translation initiation factor SUI1 and its prokaryotic homologs.
Probab=99.91 E-value=1.7e-24 Score=161.13 Aligned_cols=84 Identities=21% Similarity=0.349 Sum_probs=77.4
Q ss_pred CCCcceEEEEEEEecCCeeEEEEeCCC-CcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHHc--C
Q 033711 25 AGSKEYVHIRVQQRNGRKSLTTVQGLK-KEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQA--G 101 (113)
Q Consensus 25 ~~~~~~I~I~~e~R~g~K~VT~V~Gl~-~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i~~~L~~~--G 101 (113)
++.+++|+|++++|++||.||+|+||+ +++|+++++|.|+++||||+||.+.+.++++|+|||||++.|.++|.+. .
T Consensus 85 K~~~~~V~I~~~~R~krK~VT~V~GLe~f~idlk~laK~lkkkfacG~SV~k~~~~~~eI~IQGD~~~~v~e~L~~~~~~ 164 (173)
T TIGR01159 85 KKLPQKVTIKREPRTKRKFVTVIKGLETFDIDLKKASKTFAQKFATGCSVSKSVTGKEEIVIQGDVMDDIEDYIHEKWPE 164 (173)
T ss_pred cCCCCeEEEEEEecCCCceEEEEeCCcCCCcCHHHHHHHHHHHhCCCCccccCCCCCCEEEecCCHHHHHHHHHHHHcCC
Confidence 567899999999999999999999999 9999999999999999999999988887889999999999999999884 6
Q ss_pred CCCCCCee
Q 033711 102 IVKKEHIK 109 (113)
Q Consensus 102 ~~~~~~I~ 109 (113)
+ ++++|.
T Consensus 165 v-~e~~I~ 171 (173)
T TIGR01159 165 V-GDKDIK 171 (173)
T ss_pred C-CHHHee
Confidence 5 666775
No 9
>PRK09019 translation initiation factor Sui1; Validated
Probab=99.90 E-value=2.2e-23 Score=144.93 Aligned_cols=75 Identities=28% Similarity=0.469 Sum_probs=67.3
Q ss_pred CCCCcceEEEEEEE-ecCCeeEEEEeCCC-CcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHHcC
Q 033711 24 GAGSKEYVHIRVQQ-RNGRKSLTTVQGLK-KEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAG 101 (113)
Q Consensus 24 ~~~~~~~I~I~~e~-R~g~K~VT~V~Gl~-~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i~~~L~~~G 101 (113)
++...+.|+|++++ ++++|.||+|+||+ .+.|+++|||.||++|||||||++ ++|+||||||++|.+||.++|
T Consensus 26 ~~~~~~~vri~~~r~gRkGK~VTiI~Gl~~~~~dlk~l~K~lKkk~gcGGtvk~-----~~IelQGD~r~~v~~~L~~~G 100 (108)
T PRK09019 26 RPKGDGIVRIQRQTSGRKGKGVCLITGLDLDDAELKKLAAELKKKCGCGGAVKD-----GVIEIQGDKRDLLKSLLEAKG 100 (108)
T ss_pred CCCcCceEEEEEecCCCCCCeEEEEeCCcCCHHHHHHHHHHHHHHhcCCCeEEc-----CEEEEcCcHHHHHHHHHHHCC
Confidence 45577889998775 35678999999999 899999999999999999999985 589999999999999999999
Q ss_pred CC
Q 033711 102 IV 103 (113)
Q Consensus 102 ~~ 103 (113)
|.
T Consensus 101 f~ 102 (108)
T PRK09019 101 MK 102 (108)
T ss_pred Ce
Confidence 93
No 10
>PRK07451 translation initiation factor Sui1; Validated
Probab=99.90 E-value=3.4e-23 Score=145.34 Aligned_cols=75 Identities=25% Similarity=0.453 Sum_probs=67.6
Q ss_pred CCCCcceEEEEEEE-ecCCeeEEEEeCCC-CcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHHcC
Q 033711 24 GAGSKEYVHIRVQQ-RNGRKSLTTVQGLK-KEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAG 101 (113)
Q Consensus 24 ~~~~~~~I~I~~e~-R~g~K~VT~V~Gl~-~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i~~~L~~~G 101 (113)
++++.+.|+|++++ ++++|.||+|+||+ .+.|+++|||.||++||||||+++ ++|+||||||++|.+||.++|
T Consensus 33 ~~~~~~~irI~~~r~gR~GK~VTvV~Gl~~~~~dlk~LaK~LK~k~gcGGtvkd-----~~IelQGD~r~~v~~~L~~~G 107 (115)
T PRK07451 33 LPPQQQNLRVQATRSGRKGKTVTVITGFQHKPETLAKLLKQLKTQCGSGGTVKD-----NTIEIQGDHRQKILEILIKLG 107 (115)
T ss_pred CCccceeEEEEEEecCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCceEcC-----CEEEEcCcHHHHHHHHHHHCC
Confidence 56678888888764 55779999999999 889999999999999999999975 589999999999999999999
Q ss_pred CC
Q 033711 102 IV 103 (113)
Q Consensus 102 ~~ 103 (113)
|.
T Consensus 108 f~ 109 (115)
T PRK07451 108 YK 109 (115)
T ss_pred Ce
Confidence 94
No 11
>PRK06824 translation initiation factor Sui1; Validated
Probab=99.89 E-value=4e-23 Score=145.58 Aligned_cols=74 Identities=26% Similarity=0.441 Sum_probs=67.4
Q ss_pred CCcceEEEEEEEe-cCCeeEEEEeCCC-CcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHHcCCC
Q 033711 26 GSKEYVHIRVQQR-NGRKSLTTVQGLK-KEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIV 103 (113)
Q Consensus 26 ~~~~~I~I~~e~R-~g~K~VT~V~Gl~-~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i~~~L~~~G~~ 103 (113)
...+.|+|+++++ +++|.||+|+||+ .+.|+++|||.||++|||||||++ ++|+||||||++|.+||.++||.
T Consensus 38 ~~~~~vri~~~~kgr~gK~VTvI~Gl~~~~~dlk~l~K~LKkk~gcGGtvkd-----~~IeiQGD~r~~v~~~L~~~G~~ 112 (118)
T PRK06824 38 AGDGIVRVRRETKGRGGKTVTVITGVPLAEDALKELAKELKRRCGTGGTLKD-----GVIEIQGDHVELLLAELLKRGFK 112 (118)
T ss_pred CcCceEEEEEEEccCCCceEEEEeCCcCCHHHHHHHHHHHHHHhcCCceEec-----CEEEEcCcHHHHHHHHHHHCCCe
Confidence 3466999988864 7899999999999 899999999999999999999985 59999999999999999999994
Q ss_pred C
Q 033711 104 K 104 (113)
Q Consensus 104 ~ 104 (113)
.
T Consensus 113 ~ 113 (118)
T PRK06824 113 A 113 (118)
T ss_pred E
Confidence 3
No 12
>KOG3239 consensus Density-regulated protein related to translation initiation factor 1 (eIF-1/SUI1) [General function prediction only]
Probab=99.73 E-value=8.3e-18 Score=125.22 Aligned_cols=84 Identities=25% Similarity=0.430 Sum_probs=74.7
Q ss_pred CCcceEEEEEEEecCCeeEEEEeCCC-CcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHHc--CC
Q 033711 26 GSKEYVHIRVQQRNGRKSLTTVQGLK-KEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQA--GI 102 (113)
Q Consensus 26 ~~~~~I~I~~e~R~g~K~VT~V~Gl~-~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i~~~L~~~--G~ 102 (113)
.-+++|.|..+-|+.||.||+|+||+ |+|||+.++|.|.++||||+||+.++...++|.||||..+.|.+|+.+. -+
T Consensus 98 ~~pqkV~I~r~~R~KrK~VT~V~GL~~FdIdlk~aaK~fa~KFAtGaSVtk~a~kkdEIvIQGDv~dDi~d~I~ekw~ev 177 (193)
T KOG3239|consen 98 RLPQKVIIKREARTKRKSVTVVKGLETFDIDLKKAAKFFAQKFATGASVTKNAEKKDEIVIQGDVKDDIFDFIPEKWPEV 177 (193)
T ss_pred cCCceeEeeecccCCceeEEEEechhhccccHHHHHHHHHHhhccCccccCCCCccceEEEeccchHHHHHHHHHhcccC
Confidence 45688999999999999999999999 9999999999999999999999998888889999999999999999884 34
Q ss_pred CCCCCeee
Q 033711 103 VKKEHIKM 110 (113)
Q Consensus 103 ~~~~~I~i 110 (113)
+++++.|
T Consensus 178 -~ed~~~I 184 (193)
T KOG3239|consen 178 -PEDDVKI 184 (193)
T ss_pred -Cccccee
Confidence 4444443
No 13
>KOG2522 consensus Filamentous baseplate protein Ligatin, contains PUA domain [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=1e-16 Score=133.36 Aligned_cols=97 Identities=30% Similarity=0.412 Sum_probs=86.4
Q ss_pred CCCccccccccCC----CCCCcceEEEEEEEecCCeeEEEEeCCC-CcccHHHHHHHHhhhcccccEEEeCCC-CCeEEE
Q 033711 11 AFDPFADAKAEDS----GAGSKEYVHIRVQQRNGRKSLTTVQGLK-KEFSYNKILKDLKKEFCCNGTVVQDPE-LGQVIQ 84 (113)
Q Consensus 11 ~fdp~~~~~~~~~----~~~~~~~I~I~~e~R~g~K~VT~V~Gl~-~~~dlk~lak~lKkk~~cggsv~~~~~-~g~~I~ 84 (113)
.+.||.++...|. -++..++|.|.+++|.|||.||+|+||+ |++|++.+|..|+++|+|+.||.+.|. .+.+++
T Consensus 445 rmtp~yqi~~pdgepivkKgs~ppi~i~te~RagnKkVT~V~nle~fgiDp~S~aa~Lqk~c~aSTtv~e~pg~kg~eVq 524 (560)
T KOG2522|consen 445 RMTPFYQIFKPDGEPIVKKGSLPPIKIITEMRAGNKKVTRVSNLEVFGIDPESLAADLQKICSASTTVSESPGFKGAEVQ 524 (560)
T ss_pred cCCcceEEEcCCCceeeecCCCCceEEeehhhccCceEEEEccceeeccCHHHHHHHHHHHeeeeeecccCCCCCCceEE
Confidence 4778888866554 4688999999999999999999999999 999999999999999999999988886 568999
Q ss_pred EcCChhHHHHHHHHH-cCCCCCCCe
Q 033711 85 LQGDQRKNVSTFLVQ-AGIVKKEHI 108 (113)
Q Consensus 85 lQGD~~~~i~~~L~~-~G~~~~~~I 108 (113)
|||+|.+.|.++|.+ +|+|++ +|
T Consensus 525 vQGnqih~iadlL~k~ygipkK-~I 548 (560)
T KOG2522|consen 525 VQGNQIHSIADLLNKSYGIPKK-WI 548 (560)
T ss_pred EecchhhHHHHHHHHhhCCCHH-HH
Confidence 999999999999988 899654 44
No 14
>PF05046 Img2: Mitochondrial large subunit ribosomal protein (Img2); InterPro: IPR007740 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family of proteins has been identified as part of the mitochondrial large ribosomal subunit in Saccharomyces cerevisiae [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome
Probab=98.23 E-value=1.3e-05 Score=53.52 Aligned_cols=70 Identities=21% Similarity=0.392 Sum_probs=51.6
Q ss_pred cceEEEEEEEec-CCeeEEEEeCCCCcccHHHHHHHHhhhccc------ccEEEeCCCCCeEEEEcCChhHHHHHHHHHc
Q 033711 28 KEYVHIRVQQRN-GRKSLTTVQGLKKEFSYNKILKDLKKEFCC------NGTVVQDPELGQVIQLQGDQRKNVSTFLVQA 100 (113)
Q Consensus 28 ~~~I~I~~e~R~-g~K~VT~V~Gl~~~~dlk~lak~lKkk~~c------ggsv~~~~~~g~~I~lQGD~~~~i~~~L~~~ 100 (113)
...+-|..+.++ |++.+|+|+.++- |+..|.+.|++.|.= ...|.+ ....|+|+||+.+.|++||.+.
T Consensus 11 ~~~LPVY~~~k~~g~~~~T~IrkI~G--D~~aL~~dL~~~l~~~~~~~~~~~V~~---~~g~i~IkG~~~~~Vk~wL~~~ 85 (87)
T PF05046_consen 11 SGNLPVYLDIKNGGNRKITVIRKIEG--DIWALKKDLRKFLGEKPKKKIDVRVNE---LTGHIEIKGDHVEEVKKWLLEK 85 (87)
T ss_pred CCcccEEEEEeCCCcEeEEEEEeecC--CHHHHHHHHHHHhhhhcCCCcceEEee---cCCEEEEcCccHHHHHHHHHHC
Confidence 345566665544 7899999999973 567777777777542 233432 2458999999999999999999
Q ss_pred CC
Q 033711 101 GI 102 (113)
Q Consensus 101 G~ 102 (113)
||
T Consensus 86 GF 87 (87)
T PF05046_consen 86 GF 87 (87)
T ss_pred cC
Confidence 97
No 15
>KOG4034 consensus Uncharacterized conserved protein NOF (Neighbor of FAU) [Function unknown]
Probab=96.82 E-value=0.0035 Score=46.58 Aligned_cols=69 Identities=22% Similarity=0.324 Sum_probs=47.0
Q ss_pred eEEEEEEEe-cCCeeEEEEeCCC-C----cccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHHcCC
Q 033711 30 YVHIRVQQR-NGRKSLTTVQGLK-K----EFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGI 102 (113)
Q Consensus 30 ~I~I~~e~R-~g~K~VT~V~Gl~-~----~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i~~~L~~~G~ 102 (113)
.+-+..+.+ +|+|.+|+|+.++ + .-||.+.+...-++--| .-|.+ -.+.|.+-||+.+.|.++|.++||
T Consensus 95 nlPVYl~~k~~G~k~lT~IRkVeGDi~aLe~DL~s~L~~~~~~s~~-t~Vne---lsgqI~~~g~~v~~vr~~L~eKGF 169 (169)
T KOG4034|consen 95 NLPVYLDYKQRGNKILTVIRKVEGDIWALENDLRSTLEMSPKKSYA-THVNE---LSGQIVLKGNHVDTVREWLQEKGF 169 (169)
T ss_pred CcceEEeeecCCcEEEEEEEeecccHHHHHHHHHHHHhhccCCChh-hhhhh---hcceEEEeCChHHHHHHHHHHccC
Confidence 344555544 4999999999999 4 23566555554444333 22222 135899999999999999999997
No 16
>PRK14451 acylphosphatase; Provisional
Probab=93.92 E-value=0.29 Score=32.55 Aligned_cols=52 Identities=13% Similarity=0.137 Sum_probs=39.2
Q ss_pred EeCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCCh--hHHHHHHHH
Q 033711 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQ--RKNVSTFLV 98 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~--~~~i~~~L~ 98 (113)
|+|.-.++-+...++.+..+++..|.|...+++.=+|++||+- .++..++|.
T Consensus 9 V~G~VQGVGFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~ 62 (89)
T PRK14451 9 ISGRVQGVWFRASAKKLAEQLMISGWARNLADGRVEVFACGKEDKLEEFYTWLQ 62 (89)
T ss_pred EEEeeCCcCchHHHHHHHHHhCCEEEEEECCCCCEEEEEEECHHHHHHHHHHHh
Confidence 5666667777888888889999999998776666799999985 334444444
No 17
>PRK03988 translation initiation factor IF-2 subunit beta; Validated
Probab=93.29 E-value=0.24 Score=35.80 Aligned_cols=57 Identities=25% Similarity=0.381 Sum_probs=42.8
Q ss_pred ceEEEEEEEecCCeeEEEEeCCC---C--cccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHH
Q 033711 29 EYVHIRVQQRNGRKSLTTVQGLK---K--EFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVST 95 (113)
Q Consensus 29 ~~I~I~~e~R~g~K~VT~V~Gl~---~--~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i~~ 95 (113)
++..+.++ |+| |++.+|. . .=+.+-++|.|.+.||+.|++ + ++...|+|.+..+..+
T Consensus 31 p~~~v~~e---G~k--Tvi~Nf~~I~~~L~R~~~hv~ky~~~ELgt~g~i-~----~~~lii~G~~~~~~i~ 92 (138)
T PRK03988 31 PKPDVRIE---GNR--TIIRNFKEIADRLNRDPKHVAKFLLKELGTAGNI-E----GGRLILQGKFSPRVIN 92 (138)
T ss_pred CCCeEEEE---cCc--EEEecHHHHHHHHCCCHHHHHHHHHHHhCCceee-c----CCEEEEEEeeCHHHHH
Confidence 44445444 655 9999987 2 236899999999999999999 4 4689999997665444
No 18
>PRK14434 acylphosphatase; Provisional
Probab=93.28 E-value=0.48 Score=31.72 Aligned_cols=63 Identities=19% Similarity=0.227 Sum_probs=42.6
Q ss_pred EEeCCCCcccHHHHHHHHhhhcc-cccEEEeCCCCCeEEEEcCChhHHHHHHHHH--cCCCCCCCe
Q 033711 46 TVQGLKKEFSYNKILKDLKKEFC-CNGTVVQDPELGQVIQLQGDQRKNVSTFLVQ--AGIVKKEHI 108 (113)
Q Consensus 46 ~V~Gl~~~~dlk~lak~lKkk~~-cggsv~~~~~~g~~I~lQGD~~~~i~~~L~~--~G~~~~~~I 108 (113)
.|+|.-.++-....+..+.++++ =.|.|...+++.=+|++||+..+.|.+|+.. .|-|+-..|
T Consensus 7 ~v~G~VQGVGFR~fv~~~A~~lg~l~G~V~N~~dGsVei~~qG~~~~~l~~f~~~l~~g~pp~a~V 72 (92)
T PRK14434 7 IVSGRVQGVGFRYSVYSLALEIGDIYGRVWNNDDGTVEILAQSDDSAKLAKFIQEIRKGPSKWAKV 72 (92)
T ss_pred EEEEeecceeEhHHHHHHHHHcCCcEEEEEECCCCCEEEEEEcCCHHHHHHHHHHHhcCCCCCEEE
Confidence 34555556667777788888888 8899987666556999999865555555544 366544443
No 19
>PRK14443 acylphosphatase; Provisional
Probab=92.74 E-value=0.48 Score=31.95 Aligned_cols=56 Identities=14% Similarity=0.167 Sum_probs=38.6
Q ss_pred EeCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCC--hhHHHHHHHHHcCCC
Q 033711 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGD--QRKNVSTFLVQAGIV 103 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD--~~~~i~~~L~~~G~~ 103 (113)
|+|.-.++-....++.+..+++=.|.|...+++.=+|++||+ ..+...+.|.+ |-|
T Consensus 10 v~G~VQGVGFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~l~~f~~~l~~-g~p 67 (93)
T PRK14443 10 VTGFVQGVGFRYTTKHVAYKYDISGTVKNLDDGSVEIHAIAEEENLNKFIDAIKK-GPS 67 (93)
T ss_pred EEEeeCCccCcHHHHHHHHHcCCEEEEEECCCCEEEEEEECCHHHHHHHHHHHhc-CCC
Confidence 445445556667777777888899999877776679999998 44444444443 543
No 20
>PRK14426 acylphosphatase; Provisional
Probab=92.18 E-value=0.73 Score=30.73 Aligned_cols=61 Identities=10% Similarity=0.097 Sum_probs=40.3
Q ss_pred EeCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHH--cCCCCCCCe
Q 033711 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQ--AGIVKKEHI 108 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i~~~L~~--~G~~~~~~I 108 (113)
|+|.-.++-....++.+.++++=.|.|...+++.=+|++||+.. +|.+|+.. .|.|+...|
T Consensus 10 v~G~VQGVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~~-~i~~f~~~l~~g~P~~a~V 72 (92)
T PRK14426 10 VYGRVQGVGFRYHTQHEALKLGLTGYAKNLDDGSVEVVACGEEE-QVEKLMEWLKEGGPRSARV 72 (92)
T ss_pred EEEeeCCcCchHHHHHHHHHhCCEEEEEECCCCcEEEEEEeCHH-HHHHHHHHHhcCCCCCeEE
Confidence 34444555566777777788888999987776667999999953 24444433 365554433
No 21
>TIGR00311 aIF-2beta translation initiation factor aIF-2, beta subunit, putative.
Probab=92.09 E-value=0.45 Score=34.17 Aligned_cols=58 Identities=26% Similarity=0.335 Sum_probs=43.4
Q ss_pred cceEEEEEEEecCCeeEEEEeCCC---C--cccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHH
Q 033711 28 KEYVHIRVQQRNGRKSLTTVQGLK---K--EFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVST 95 (113)
Q Consensus 28 ~~~I~I~~e~R~g~K~VT~V~Gl~---~--~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i~~ 95 (113)
.++..+.++ |+| |++.+|. . .=+.+-++|.|.+.||+.|++. ++...|+|.+.....+
T Consensus 25 mP~~~v~~e---G~k--Tvi~Nf~~Ia~~L~R~~~~v~ky~~~ELgt~g~i~-----~~rlii~G~~~~~~i~ 87 (133)
T TIGR00311 25 VPKAYIVIE---GNR--TIIQNFREVAKALNRDEQHLLKYLLKELGTAGNLE-----GGRLILQGKFTHFLLN 87 (133)
T ss_pred CCCceEEEE---cCc--EEEecHHHHHHHHCCCHHHHHHHHHHHhCCCceec-----CCEEEEEeecCHHHHH
Confidence 444555554 555 9999987 2 2368999999999999999983 3589999998775544
No 22
>PRK14450 acylphosphatase; Provisional
Probab=92.06 E-value=0.85 Score=30.24 Aligned_cols=55 Identities=13% Similarity=0.141 Sum_probs=40.2
Q ss_pred EEeCCCCcccHHHHHHHHhhhcccccEEEeCCCCC-eEEEEcCC--hhHHHHHHHHHcC
Q 033711 46 TVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELG-QVIQLQGD--QRKNVSTFLVQAG 101 (113)
Q Consensus 46 ~V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g-~~I~lQGD--~~~~i~~~L~~~G 101 (113)
+|+|.-.++-....+..+..+++=.|.|...+++. =+|++||+ ..+...++|. .|
T Consensus 7 ~v~G~VQGVGFR~~v~~~A~~~~l~G~V~N~~dG~~Vei~~~G~~~~v~~f~~~l~-~g 64 (91)
T PRK14450 7 IVKGKVQGVYFRDFTRTQATRLGLCGYAKNLANGNEVEVVAEGDKDSLLEFLDLLR-SG 64 (91)
T ss_pred EEEEEecCcCcHHHHHHHHHHcCCEEEEEECCCCCEEEEEEEeCHHHHHHHHHHHh-hC
Confidence 34455556667777888888888999998766553 58999999 6667777775 45
No 23
>PRK14444 acylphosphatase; Provisional
Probab=91.93 E-value=0.97 Score=30.16 Aligned_cols=53 Identities=13% Similarity=0.160 Sum_probs=37.1
Q ss_pred EEeCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHH
Q 033711 46 TVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQ 99 (113)
Q Consensus 46 ~V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i~~~L~~ 99 (113)
+|+|.-.++-+...+..+.++++=.|.|+..+++.=+|++||+- ++|.+|+..
T Consensus 9 ~v~G~VQGVGFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~qG~~-~~i~~f~~~ 61 (92)
T PRK14444 9 FISGRVQGVNFRAYTRDRAREAGVKGWVRNLSDGRVEAVFEGSR-PAVQKMISW 61 (92)
T ss_pred EEEEeeCCcCcHHHHHHHHHHhCCEEEEEECCCCcEEEEEEcCH-HHHHHHHHH
Confidence 34565556667777777778888999998766554599999994 335555544
No 24
>PRK14420 acylphosphatase; Provisional
Probab=91.39 E-value=1.1 Score=29.67 Aligned_cols=59 Identities=15% Similarity=0.160 Sum_probs=40.0
Q ss_pred EeCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHH--cCCCCCCC
Q 033711 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQ--AGIVKKEH 107 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i~~~L~~--~G~~~~~~ 107 (113)
|+|.-.++-....+..+..+++=.|.|...+++.=+|++||+- +.|.+|+.. .| |+...
T Consensus 8 v~G~VQGVGFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~-~~i~~f~~~l~~~-p~~a~ 68 (91)
T PRK14420 8 VDGRVQGVGFRYFVQMEADKRKLTGWVKNRDDGTVEIEAEGPE-EALQLFLDAIEKG-SPFSK 68 (91)
T ss_pred EEEeeCCcCChHHHHHHHHHcCCEEEEEECCCCcEEEEEEECH-HHHHHHHHHHHhC-CCCCE
Confidence 3444445556666677777788899998776655699999984 666666655 36 45443
No 25
>smart00653 eIF2B_5 domain present in translation initiation factor eIF2B and eIF5.
Probab=90.60 E-value=0.88 Score=31.65 Aligned_cols=61 Identities=16% Similarity=0.175 Sum_probs=43.9
Q ss_pred eEEEEEEEecCCeeEEEEeCCC---C--cccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHH-HHH
Q 033711 30 YVHIRVQQRNGRKSLTTVQGLK---K--EFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVST-FLV 98 (113)
Q Consensus 30 ~I~I~~e~R~g~K~VT~V~Gl~---~--~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i~~-~L~ 98 (113)
+..+.++ |+| -|++.+|. . .=+++-++|.|.+.||+.|++.. .+...|+|.+..+-.+ .|.
T Consensus 8 ~~~v~~e---G~~-kTvi~Nf~~I~~~L~R~p~hv~kyl~~ELgt~g~id~----~~rlii~G~~~~~~i~~~l~ 74 (110)
T smart00653 8 PPQVLRE---GKG-KTVIVNFADIAKALNRPPDHVLKFLLAELGTQGSIDG----KGRLIVNGRFTPKKLQDLLR 74 (110)
T ss_pred CCeEEEE---cCC-eEEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceeECC----CCeEEEEEeeCHHHHHHHHH
Confidence 3444444 544 68888987 2 23689999999999999999953 2589999997765444 443
No 26
>PRK14432 acylphosphatase; Provisional
Probab=90.47 E-value=1.7 Score=29.16 Aligned_cols=61 Identities=13% Similarity=0.127 Sum_probs=40.1
Q ss_pred EEeCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEc-CChhHHHHHHHHH--cCCCCCCCe
Q 033711 46 TVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQ-GDQRKNVSTFLVQ--AGIVKKEHI 108 (113)
Q Consensus 46 ~V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQ-GD~~~~i~~~L~~--~G~~~~~~I 108 (113)
+|+|.-.++-....++.+.++++=.|.|...+++.=+|++| ||. +.|.+|+.. .| |+...|
T Consensus 7 ~v~G~VQGVGFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~~~G~~-~~v~~f~~~l~~g-p~~a~V 70 (93)
T PRK14432 7 FISGKVQGVGFRFFTEQIANNMKLKGFVKNLNDGRVEIVAFFNTK-EQMKKFEKLLKNG-NKYSNI 70 (93)
T ss_pred EEEEeecCeeehHHHHHHHHHhCCEEEEEECCCCCEEEEEEECCH-HHHHHHHHHHHhC-CCccEE
Confidence 34454455566677777777788899998776665689998 985 445555543 36 554443
No 27
>PRK14422 acylphosphatase; Provisional
Probab=90.44 E-value=1.8 Score=28.92 Aligned_cols=60 Identities=10% Similarity=0.066 Sum_probs=40.7
Q ss_pred EEeCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChh--HHHHHHHHHcCCCCCCC
Q 033711 46 TVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQR--KNVSTFLVQAGIVKKEH 107 (113)
Q Consensus 46 ~V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~--~~i~~~L~~~G~~~~~~ 107 (113)
.|+|.-.++-....++.+..+++=.|.|...+++.=+|++||+.. +...+.|.+ | |+...
T Consensus 11 ~v~G~VQGVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~~-g-p~~a~ 72 (93)
T PRK14422 11 WVHGHVQGVGFRWWTRSRALELGLTGYAANLADGRVQVVAEGPRAACEKLLQLLRG-D-DTPGR 72 (93)
T ss_pred EEEEeeCCcCcHHHHHHHHHHcCCEEEEEECCCCCEEEEEEcCHHHHHHHHHHHHh-C-CCCcE
Confidence 345555566677777888888889999987766656999999864 344444443 5 55443
No 28
>PRK14429 acylphosphatase; Provisional
Probab=90.29 E-value=1.4 Score=29.17 Aligned_cols=59 Identities=15% Similarity=0.162 Sum_probs=40.4
Q ss_pred EeCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChh--HHHHHHHHHcCCCCCCC
Q 033711 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQR--KNVSTFLVQAGIVKKEH 107 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~--~~i~~~L~~~G~~~~~~ 107 (113)
|+|.-.++-+...++.+..+++=.|.|...+++.=+|++||+-. +...++|. .| |+...
T Consensus 8 v~G~VQGVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~-~g-p~~a~ 68 (90)
T PRK14429 8 LTGKVQGVGCRRATLTKARALGVTGYVTNCEDGSVEILAQGSDPAVDNLIAWCE-VG-VPCTE 68 (90)
T ss_pred EEEeecCeeeHHHHHHHHHHhCCEEEEEECCCCeEEEEEEeCHHHHHHHHHHHh-hC-CCceE
Confidence 34554556667777888888889999987665556999999864 45555554 36 55443
No 29
>PRK14433 acylphosphatase; Provisional
Probab=89.34 E-value=1.8 Score=28.54 Aligned_cols=53 Identities=13% Similarity=0.181 Sum_probs=37.9
Q ss_pred EEeCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHH
Q 033711 46 TVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQ 99 (113)
Q Consensus 46 ~V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i~~~L~~ 99 (113)
+|+|.-.++-....++.+..+++=.|.|...+++.=+|.+|||-. .|.+|+..
T Consensus 6 ~v~G~VQGVGFR~~v~~~A~~~~l~G~V~N~~dG~Vei~~~G~~~-~i~~f~~~ 58 (87)
T PRK14433 6 LVSGRVQGVGYRAFVQKKARELGLSGYAENLSDGRVEVVAEGPKE-ALERLLHW 58 (87)
T ss_pred EEEEeeeCcCchHHHHHHHHHcCCEEEEEECCCCCEEEEEEECHH-HHHHHHHH
Confidence 344544555667777778888889999987776556999999963 56665544
No 30
>PRK14439 acylphosphatase; Provisional
Probab=89.24 E-value=1.8 Score=32.23 Aligned_cols=57 Identities=12% Similarity=0.119 Sum_probs=41.7
Q ss_pred EEEeCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCCh--hHHHHHHHHHcC
Q 033711 45 TTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQ--RKNVSTFLVQAG 101 (113)
Q Consensus 45 T~V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~--~~~i~~~L~~~G 101 (113)
-.|+|.-.++-....++.+..+++=.|.|...+++.=+|++||+. .+...+.|.+.|
T Consensus 79 i~VsGrVQGVGFR~fv~~~A~qlGLtGwVrNl~DGsVEI~aQG~ee~Ie~Fi~~L~~~g 137 (163)
T PRK14439 79 AWVYGRVQGVGFRYTTQYEAKKLGLTGYAKNLDDGSVEVVACGEEGQVEKLMQWLKSGG 137 (163)
T ss_pred EEEEEeeCCcCchHHHHHHHHHhCCEEEEEECCCCCEEEEEEcCHHHHHHHHHHHhhCC
Confidence 345676677778888888888999999998777666799999985 444444444434
No 31
>PRK14437 acylphosphatase; Provisional
Probab=88.96 E-value=2.1 Score=29.64 Aligned_cols=52 Identities=13% Similarity=0.143 Sum_probs=38.4
Q ss_pred EeCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChh--HHHHHHHH
Q 033711 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQR--KNVSTFLV 98 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~--~~i~~~L~ 98 (113)
|+|.-.++-+...+..+.++++=.|.|...+++.=+|++||+.. +...++|.
T Consensus 29 V~G~VQGVGFR~fv~~~A~~lgL~G~V~N~~dG~Vei~~qG~~~~ie~f~~~L~ 82 (109)
T PRK14437 29 VSGKVQGVFFRESVRKKAEELQLTGWVKNLSHGDVELVACGERDSIMILTEWLW 82 (109)
T ss_pred EEEecCCcCchHHHHHHHHHhCCeEEEEECCCCCEEEEEEECHHHHHHHHHHHH
Confidence 45655666677778888888889999987776667999999864 44444554
No 32
>PRK14435 acylphosphatase; Provisional
Probab=88.81 E-value=2.1 Score=28.41 Aligned_cols=52 Identities=19% Similarity=0.387 Sum_probs=36.4
Q ss_pred EeCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHH
Q 033711 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQ 99 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i~~~L~~ 99 (113)
|+|.-.++-....++.+..+++=.|.|...+++.=+|++||+- ++|.+|+..
T Consensus 8 v~G~VQGVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~-~~i~~f~~~ 59 (90)
T PRK14435 8 VEGIVQGVGFRYFTRRVAKSLGVKGYVMNMDDGSVFIHAEGDE-NALRRFLNE 59 (90)
T ss_pred EEEEeCCcCChHHHHHHHHHhCCEEEEEECCCCCEEEEEEECH-HHHHHHHHH
Confidence 4455555566677777777788899998777766799999986 335554443
No 33
>PRK14431 acylphosphatase; Provisional
Probab=88.79 E-value=2.2 Score=28.36 Aligned_cols=60 Identities=17% Similarity=0.210 Sum_probs=41.2
Q ss_pred EeCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCCh--hHHHHHHHHHcCCCCCCCe
Q 033711 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQ--RKNVSTFLVQAGIVKKEHI 108 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~--~~~i~~~L~~~G~~~~~~I 108 (113)
|+|.-.++-+...++.+.++++=.|.|...++ +=+|++||+. .+...++|.+ |-|+...|
T Consensus 8 v~G~VQGVGFR~~~~~~A~~~gl~G~V~N~~d-gVei~~qG~~~~l~~f~~~l~~-g~p~~a~V 69 (89)
T PRK14431 8 VFGRVQGVGFRYFTQRIAMNYNIVGTVQNVDD-YVEIYAQGDDADLERFIQGVIE-GASPASNV 69 (89)
T ss_pred EEEecCCeeEhHHHHHHHhhcCCEEEEEECCC-cEEEEEEcCHHHHHHHHHHHhc-CCCCcEEE
Confidence 45555566677777888888889999987766 5799999985 4455555554 55444333
No 34
>PRK14427 acylphosphatase; Provisional
Probab=88.53 E-value=2.1 Score=28.68 Aligned_cols=59 Identities=14% Similarity=0.130 Sum_probs=38.9
Q ss_pred eCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHH--cCCCCCCCe
Q 033711 48 QGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQ--AGIVKKEHI 108 (113)
Q Consensus 48 ~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i~~~L~~--~G~~~~~~I 108 (113)
+|.-.++-+...++.+..+++=.|.|...+++.=+|++||+.. .|.+|+.. .| |+...|
T Consensus 13 ~G~VQGVGFR~fv~~~A~~lgl~G~V~N~~dGsVei~~qG~~~-~i~~f~~~l~~~-p~~a~V 73 (94)
T PRK14427 13 FGVVQGVGFRYWTMRKAEELGLTGTVRNLDDGSVALVAEGTGE-QVEKLLDWLNSD-RAPGRV 73 (94)
T ss_pred EEEeCCcCChHHHHHHHHHcCCEEEEEECCCCeEEEEEEECHH-HHHHHHHHHhhC-CCCcEE
Confidence 3444455566677777788888999987665556999999874 35555544 25 554433
No 35
>PRK14425 acylphosphatase; Provisional
Probab=88.53 E-value=1.9 Score=28.89 Aligned_cols=51 Identities=10% Similarity=0.134 Sum_probs=35.9
Q ss_pred eCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChh--HHHHHHHH
Q 033711 48 QGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQR--KNVSTFLV 98 (113)
Q Consensus 48 ~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~--~~i~~~L~ 98 (113)
+|.-.++-....++.+.++++=.|.|...+++.=+|++||+.- +...+.|.
T Consensus 13 ~G~VQGVGFR~~v~~~A~~~gl~G~V~N~~dGsVei~~qG~~~~le~f~~~l~ 65 (94)
T PRK14425 13 TGRVQGVGFRDWTRDEAERLGLTGWVRNESDGSVTALIAGPDSAISAMIERFR 65 (94)
T ss_pred EEeEecccchHHHHHHHHHhCCEEEEEECCCCeEEEEEEeCHHHHHHHHHHHh
Confidence 4444455566667777777888999987766657999999744 56666665
No 36
>PRK14448 acylphosphatase; Provisional
Probab=88.41 E-value=3 Score=27.64 Aligned_cols=53 Identities=13% Similarity=0.141 Sum_probs=38.3
Q ss_pred EEeCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCCh--hHHHHHHHH
Q 033711 46 TVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQ--RKNVSTFLV 98 (113)
Q Consensus 46 ~V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~--~~~i~~~L~ 98 (113)
+|+|.-.++-....++.+..+++=.|.|...+++.=+|.+||+- .+...++|.
T Consensus 7 ~v~G~VQGVGFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~~G~~~~v~~f~~~l~ 61 (90)
T PRK14448 7 IVYGHVQGVGFRYFTWQEATKIGIKGYVKNRPDGSVEVVAVGSDAQIAAFRDWLQ 61 (90)
T ss_pred EEEEeecCcchHHHHHHHHHHhCCEEEEEECCCCCEEEEEEeCHHHHHHHHHHHH
Confidence 45555566677777888888888999998877666799999986 334444443
No 37
>PRK14428 acylphosphatase; Provisional
Probab=88.00 E-value=2.9 Score=28.35 Aligned_cols=53 Identities=17% Similarity=0.224 Sum_probs=38.1
Q ss_pred EEeCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHH
Q 033711 46 TVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQ 99 (113)
Q Consensus 46 ~V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i~~~L~~ 99 (113)
.|+|.-.++-+.-.+..+.++++=.|.|...+++.=+|++||+. +.|.+|+..
T Consensus 13 ~v~G~VQGVGFR~fv~~~A~~lgL~G~V~N~~dGsVei~~qG~~-~~i~~fi~~ 65 (97)
T PRK14428 13 VVTGLVQGVGFRYFTVTQARRLGVQGWVRNCRDGSVELEAQGSS-DAVQALVEQ 65 (97)
T ss_pred EEEEecCCccchHHHHHHHHHcCCEEEEEECCCCEEEEEEEcCH-HHHHHHHHH
Confidence 34555556667777788888888999998776666799999985 445555544
No 38
>PRK14423 acylphosphatase; Provisional
Probab=87.82 E-value=2.7 Score=27.96 Aligned_cols=52 Identities=17% Similarity=0.192 Sum_probs=36.7
Q ss_pred EeCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHH
Q 033711 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQ 99 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i~~~L~~ 99 (113)
|+|.-.++-+...++.+.++++=.|.|...+++.=+|++||+.. .|.+|+..
T Consensus 11 v~G~VQGVGFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~~G~~~-~i~~f~~~ 62 (92)
T PRK14423 11 VSGRVQGVYYRASTRDTARELGVDGWVRNLDDGRVEAVFEGPRD-AVEAMVEW 62 (92)
T ss_pred EEEecCCeeehHHHHHHHHHcCCEEEEEECCCCeEEEEEEECHH-HHHHHHHH
Confidence 34555566677778888888889999987655545899999854 45554433
No 39
>PRK14442 acylphosphatase; Provisional
Probab=87.32 E-value=3.3 Score=27.50 Aligned_cols=50 Identities=10% Similarity=0.148 Sum_probs=36.2
Q ss_pred EeCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHH
Q 033711 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFL 97 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i~~~L 97 (113)
|+|.-.++-+...++.+.++++=.|.|...+++.=+|++||+.. .|.+|+
T Consensus 10 v~G~VQGVGFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~-~i~~f~ 59 (91)
T PRK14442 10 VGGRVQGVGFRQATREEADRLELDGWVRNLDDGRVEVVWEGEED-RAKALE 59 (91)
T ss_pred EEEecCCccccHHHHHHHHHcCCEEEEEECCCCCEEEEEEcCHH-HHHHHH
Confidence 45555566667777777788889999987766667999999854 344444
No 40
>PRK12336 translation initiation factor IF-2 subunit beta; Provisional
Probab=87.12 E-value=1.9 Score=32.73 Aligned_cols=62 Identities=15% Similarity=0.207 Sum_probs=43.9
Q ss_pred cceEEEEEEEecCCeeEEEEeCCC---C--cccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHH-HHHH
Q 033711 28 KEYVHIRVQQRNGRKSLTTVQGLK---K--EFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVST-FLVQ 99 (113)
Q Consensus 28 ~~~I~I~~e~R~g~K~VT~V~Gl~---~--~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i~~-~L~~ 99 (113)
.++..+.++ |+| |++.||. . .=+.+-++|.|...||+.|++. ++...|+|.+...-.+ +|..
T Consensus 26 ~p~~~v~~e---G~k--T~i~N~~~i~~~l~R~~~~~~ky~~~ELgt~~~~~-----~~~~ii~G~~~~~~i~~~l~~ 93 (201)
T PRK12336 26 IPEPKIFIE---GKT--TILTNFGEIADALNRDPDHLMKFLQRELGTAGKIE-----GGRAVFNGKFTEEDIQAAIDA 93 (201)
T ss_pred cCCceEEEE---cCc--EEEecHHHHHHHHCCCHHHHHHHHHHHhCCcceec-----CCEEEEEeeeCHHHHHHHHHH
Confidence 344445544 533 8999987 2 2368999999999999999994 3489999997664444 4433
No 41
>PRK14440 acylphosphatase; Provisional
Probab=87.07 E-value=3.6 Score=27.33 Aligned_cols=52 Identities=17% Similarity=0.242 Sum_probs=35.2
Q ss_pred EeCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHH
Q 033711 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQ 99 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i~~~L~~ 99 (113)
|+|.-.++-....+..+.++++=.|.|...+++.=+|.+||+- +.|.+|+..
T Consensus 9 v~G~VQGVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~-~~v~~f~~~ 60 (90)
T PRK14440 9 VYGLVQGVGFRKFVQIHAIRLGIKGYAKNLPDGSVEVVAEGYE-EALSKLLER 60 (90)
T ss_pred EEEeEeccCchHHHHHHHHHcCCEEEEEECCCCCEEEEEEcCH-HHHHHHHHH
Confidence 3444445556666677777777889998766555699999976 555555544
No 42
>PRK14452 acylphosphatase; Provisional
Probab=86.86 E-value=4.5 Score=27.91 Aligned_cols=51 Identities=12% Similarity=0.091 Sum_probs=37.0
Q ss_pred EEeCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHH
Q 033711 46 TVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFL 97 (113)
Q Consensus 46 ~V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i~~~L 97 (113)
+|+|.-.++-+...+..+.++++=.|.|...+++.=+|++||+.. .|.+|+
T Consensus 25 ~V~G~VQGVGFR~~v~~~A~~lgL~G~V~N~~dGsVeI~~qG~~~-~ve~F~ 75 (107)
T PRK14452 25 LIEGRVQGVGFRASCCRRALDLGLSGWVRNLSDGSVEVQAEGPPL-ALSELR 75 (107)
T ss_pred EEEEeecCcChhHHHHHHHHHhCCEEEEEECCCCCEEEEEEcCHH-HHHHHH
Confidence 445555566677777777788889999987766657999999953 455553
No 43
>PRK14445 acylphosphatase; Provisional
Probab=86.83 E-value=2.6 Score=27.90 Aligned_cols=52 Identities=19% Similarity=0.219 Sum_probs=36.3
Q ss_pred EeCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCCh--hHHHHHHHH
Q 033711 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQ--RKNVSTFLV 98 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~--~~~i~~~L~ 98 (113)
|+|.-.++-....++.+.++++=.|.|...+++.=+|++||+- .+...++|.
T Consensus 10 v~G~VQGVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~l~~f~~~l~ 63 (91)
T PRK14445 10 VSGLVQGVGFRMFIDRAASELNLSGWVRNLPDGTVEIEAQGSSGMIDELIKQAE 63 (91)
T ss_pred EEEEEcCcCChHHHHHHHhhCCCEEEEEECCCCeEEEEEEECHHHHHHHHHHHH
Confidence 4455455666777778888888999998766555699999986 334444444
No 44
>PRK14436 acylphosphatase; Provisional
Probab=86.46 E-value=4.1 Score=27.08 Aligned_cols=52 Identities=17% Similarity=0.251 Sum_probs=36.7
Q ss_pred EeCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHH
Q 033711 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQ 99 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i~~~L~~ 99 (113)
|+|.-.++-+...++.+..+++=.|.|...+++.=+|++||+- ++|.+|+..
T Consensus 10 v~G~VQGVGFR~~v~~~A~~l~l~G~V~N~~dG~Vei~~qG~~-~~i~~f~~~ 61 (91)
T PRK14436 10 IYGRVQGVGFRWSMQREARKLGVNGWVRNLPDGSVEAVLEGDE-ERVEALIGW 61 (91)
T ss_pred EEEeeCCcCcHHHHHHHHHHcCCEEEEEECCCCcEEEEEEcCH-HHHHHHHHH
Confidence 3454455666777777778888899998776655699999986 335555544
No 45
>PRK14446 acylphosphatase; Provisional
Probab=85.99 E-value=3.1 Score=27.67 Aligned_cols=53 Identities=9% Similarity=0.108 Sum_probs=39.0
Q ss_pred EEeCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHH
Q 033711 46 TVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQ 99 (113)
Q Consensus 46 ~V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i~~~L~~ 99 (113)
.|+|.-.++-+...+..+.++++=.|.|...+++.=+|++||+-. .+.+|+..
T Consensus 7 ~v~G~VQGVGFR~fv~~~A~~lgl~G~V~N~~dGsVei~~qG~~~-~l~~f~~~ 59 (88)
T PRK14446 7 VVSGVVQGVWYRASTRERAVALGLVGHARNQADGSVEVVAAGSAA-ALEALEAW 59 (88)
T ss_pred EEEEecCCeeEhHHHHHHHeeCCeEEEEEECCCCCEEEEEEeCHH-HHHHHHHH
Confidence 345655666777888888899999999988777667999999853 44444433
No 46
>PRK14424 acylphosphatase; Provisional
Probab=85.79 E-value=5 Score=26.95 Aligned_cols=53 Identities=13% Similarity=0.144 Sum_probs=37.2
Q ss_pred EEeCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChh--HHHHHHHH
Q 033711 46 TVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQR--KNVSTFLV 98 (113)
Q Consensus 46 ~V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~--~~i~~~L~ 98 (113)
+|+|.-.++-+...+..+..+++=.|.|...+++.=+|.+||+-. +...++|.
T Consensus 12 ~v~G~VQGVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~v~~f~~~l~ 66 (94)
T PRK14424 12 RVRGVVQGVGFRHATVREAHALGLRGWVANLEDGTVEAMIQGPAAQIDRMLAWLR 66 (94)
T ss_pred EEEEeecCCchHHHHHHHHHHcCCeEEEEECCCCCEEEEEEECHHHHHHHHHHHH
Confidence 344555556667777777788888999987776556999999864 44444554
No 47
>PRK14421 acylphosphatase; Provisional
Probab=85.64 E-value=4 Score=27.78 Aligned_cols=52 Identities=10% Similarity=0.084 Sum_probs=35.9
Q ss_pred EeCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChh--HHHHHHHH
Q 033711 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQR--KNVSTFLV 98 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~--~~i~~~L~ 98 (113)
|+|.-.++-....+..+.++++=.|.|...+++.=+|++||+-. +...++|.
T Consensus 10 v~G~VQGVGFR~fv~~~A~~lgL~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~ 63 (99)
T PRK14421 10 IRGRVQGVGYRAWVARTAEALGLEGWVRNRRDGSVEALFAGPADAVAEMIARCR 63 (99)
T ss_pred EEEeEcCccchHHHHHHHHHhCCEEEEEECCCCEEEEEEeCCHHHHHHHHHHHH
Confidence 44554555667777777788888999987665556999999864 34444444
No 48
>PRK14449 acylphosphatase; Provisional
Probab=85.24 E-value=4 Score=26.98 Aligned_cols=52 Identities=10% Similarity=0.097 Sum_probs=37.7
Q ss_pred EeCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHH
Q 033711 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQ 99 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i~~~L~~ 99 (113)
|+|.-.++-....++.+..+++=.|.|...+++.=+|++||+. +.|.+|+..
T Consensus 9 v~G~VQGVGFR~fv~~~A~~lgl~G~V~N~~dG~Vei~~~G~~-~~v~~f~~~ 60 (90)
T PRK14449 9 ITGHVQGVGLRYSVYQKAVSLGITGYAENLYDGSVEVVAEGDE-ENIKELINF 60 (90)
T ss_pred EEEeecCcChHHHHHHHHHHcCCEEEEEECCCCeEEEEEEeCH-HHHHHHHHH
Confidence 4554456667777788888888999998776665799999986 335555544
No 49
>PRK14438 acylphosphatase; Provisional
Probab=85.15 E-value=4.1 Score=27.01 Aligned_cols=53 Identities=17% Similarity=0.265 Sum_probs=37.9
Q ss_pred EEeCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHH
Q 033711 46 TVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQ 99 (113)
Q Consensus 46 ~V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i~~~L~~ 99 (113)
.|+|.-.++-....++.+..+++=.|.|...+++.=+|.+||+- ++|.+|+..
T Consensus 8 ~v~G~VQGVGFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~-~~i~~f~~~ 60 (91)
T PRK14438 8 TVKGLVQGVAFRHHTQQTAQRLNVSGWVKNLPNGSVQGCFEGEE-TDVAALIDW 60 (91)
T ss_pred EEEEecCCcCccHHHHHHHHHcCCEEEEEECCCCEEEEEEEECH-HHHHHHHHH
Confidence 34555566667778888888889999998766554589999985 335555544
No 50
>PF01873 eIF-5_eIF-2B: Domain found in IF2B/IF5; InterPro: IPR002735 The beta subunit of archaeal and eukaryotic translation initiation factor 2 (IF2beta) and the N-terminal domain of translation initiation factor 5 (IF5) show significant sequence homology []. Archaeal IF2beta contains two independent structural domains: an N-terminal mixed alpha/beta core domain (topological similarity to the common core of ribosomal proteins L23 and L15e), and a C-terminal domain consisting of a zinc-binding C4 finger []. Archaeal IF2beta is a ribosome-dependent GTPase that stimulates the binding of initiator Met-tRNA(i)(Met) to the ribosomes, even in the absence of other factors []. The C-terminal domain of eukaryotic IF5 is involved in the formation of the multi-factor complex (MFC), an important intermediate for the 43S pre-initiation complex assembly []. IF5 interacts directly with IF1, IF2beta and IF3c, which together with IF2-bound Met-tRNA(i)(Met) form the MFC. This entry represents both the N-terminal and zinc-binding domains of IF2, as well as a domain in IF5.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2DCU_B 2D74_B 2E9H_A 2G2K_A 1NEE_A 3CW2_L 2QMU_C 3V11_C 2NXU_A 2QN6_C ....
Probab=84.35 E-value=2 Score=30.50 Aligned_cols=66 Identities=15% Similarity=0.245 Sum_probs=45.4
Q ss_pred CCcceEEEEEEEecCCeeEEEEeCCC---C--cccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhH-HHHHHHHH
Q 033711 26 GSKEYVHIRVQQRNGRKSLTTVQGLK---K--EFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRK-NVSTFLVQ 99 (113)
Q Consensus 26 ~~~~~I~I~~e~R~g~K~VT~V~Gl~---~--~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~-~i~~~L~~ 99 (113)
-..+++.+.++ |+ .=|++.+|. . .-+++-++|.|...||+.|++.. .+...|+|.+.. +|.++|.+
T Consensus 17 ~kmP~~~v~~e---G~-~KTvi~Nf~dI~~~L~R~p~~~~ky~~~ELgt~~~id~----~~~lii~G~~~~~~i~~~L~~ 88 (125)
T PF01873_consen 17 YKMPPPQVKIE---GK-KKTVIVNFVDICKALNRDPEHVLKYFGKELGTQGSIDG----KGRLIINGRFSSKQIQDLLDK 88 (125)
T ss_dssp -CCCT--EEEE---TS-TEEEETTHHHHHHHHTSSHHHHHHHHHHHSSSEEEEET----TTEEEEESSSSCCHHHHHHHH
T ss_pred eecCCCeEEEE---cc-ceeeeecHHHHHHHHCCCHHHHHHHHHHHHCCceEECC----CCEEEEEEecCHHHHHHHHHH
Confidence 34455566555 53 558888887 1 23799999999999999999964 268999999765 44445544
No 51
>PRK14447 acylphosphatase; Provisional
Probab=84.24 E-value=4.9 Score=26.86 Aligned_cols=53 Identities=15% Similarity=0.177 Sum_probs=37.2
Q ss_pred EEeCCCCcccHHHHHHHHhhhcccccEEEeCCCC-CeEEEEcCChhHHHHHHHHH
Q 033711 46 TVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPEL-GQVIQLQGDQRKNVSTFLVQ 99 (113)
Q Consensus 46 ~V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~-g~~I~lQGD~~~~i~~~L~~ 99 (113)
.|+|.-.++-+...++.+.++++=.|.|...+++ .=+|++||+ .+.|.+|+..
T Consensus 9 ~v~G~VQGVGFR~~~~~~A~~~gl~G~V~N~~dG~~Vei~~qG~-~~~l~~f~~~ 62 (95)
T PRK14447 9 FIRGKVQGVFFRQSMKEVANRNGVRGWVRNRSDGRTVEAVLEGP-RDAVLKVIEW 62 (95)
T ss_pred EEEEecCCccchHHHHHHHhhcCeEEEEEECCCCCEEEEEEEeC-HHHHHHHHHH
Confidence 3456556667777888888888899999876655 258999998 4455555443
No 52
>PRK14441 acylphosphatase; Provisional
Probab=83.78 E-value=5.7 Score=26.44 Aligned_cols=52 Identities=13% Similarity=0.199 Sum_probs=36.5
Q ss_pred EeCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChh--HHHHHHHH
Q 033711 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQR--KNVSTFLV 98 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~--~~i~~~L~ 98 (113)
|+|.-.++-....+..+.++++=.|.|...+++.=+|++||+-. +...++|.
T Consensus 11 v~G~VQGVGFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~ 64 (93)
T PRK14441 11 VSGRVQGVAFRQSAADEARRLGVEGWVRNLPDGRVEAEAEGERAAVGALVRWCH 64 (93)
T ss_pred EEEecCCccchHHHHHHHhhcCcEEEEEECCCCEEEEEEEECHHHHHHHHHHHh
Confidence 44555566677777888888889999987665556999999843 34444443
No 53
>PF00708 Acylphosphatase: Acylphosphatase; InterPro: IPR001792 Acylphosphatase (3.6.1.7 from EC) is an enzyme of approximately 98 amino acid residues that specifically catalyses the hydrolysis of the carboxyl-phosphate bond of acylphosphates [], its substrates including 1,3-diphosphoglycerate and carbamyl phosphate []. The enzyme has a mainly beta-sheet structure with 2 short alpha-helical segments. It is distributed in a tissue-specific manner in a wide variety of species, although its physiological role is as yet unknown []: it may, however, play a part in the regulation of the glycolytic pathway and pyrimidine biosynthesis []. There are two known isozymes. One seems to be specific to muscular tissues, the other, called 'organ-common type', is found in many different tissues. While bacterial and archebacterial hypothetical proteins that are highly similar to that enzyme and that probably possess the same activity. These proteins include: Escherichia coli putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yccX). Bacillus subtilis putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yflL). Archaeoglobus fulgidus putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (O29440 from SWISSPROT). An acylphosphatase-like domain is also found in some prokaryotic hydrogenase maturation HypF carbamoyltransferases [, ].; PDB: 1APS_A 1GXT_A 1GXU_A 2HLT_A 2FHM_A 2HLU_A 3BR8_A 1ULR_A 3TRG_A 2BJD_A ....
Probab=83.22 E-value=5.4 Score=25.96 Aligned_cols=53 Identities=17% Similarity=0.336 Sum_probs=37.1
Q ss_pred EEeCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHH
Q 033711 46 TVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQ 99 (113)
Q Consensus 46 ~V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i~~~L~~ 99 (113)
+|+|.-.++-....++.+..+++=.|.|...+++.=+|++||+. +.|.+|+..
T Consensus 9 ~v~G~VQGVgFR~~v~~~A~~~gl~G~V~N~~dg~V~i~~~G~~-~~l~~f~~~ 61 (91)
T PF00708_consen 9 IVSGRVQGVGFRPFVKRIARKLGLTGWVRNLPDGSVEIEAEGEE-EQLEEFIKW 61 (91)
T ss_dssp EEEEETSSSSHHHHHHHHHHHTT-EEEEEE-TTSEEEEEEEEEH-HHHHHHHHH
T ss_pred EEEEEECcCChhHHHHHHHHHhCCceEEEECCCCEEEEEEEeCH-HHHHHHHHH
Confidence 45565567778888888889999999998766655699999964 335554433
No 54
>PRK14430 acylphosphatase; Provisional
Probab=81.94 E-value=8.1 Score=25.72 Aligned_cols=51 Identities=12% Similarity=0.184 Sum_probs=35.4
Q ss_pred EeCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCCh--hHHHHHHH
Q 033711 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQ--RKNVSTFL 97 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~--~~~i~~~L 97 (113)
|.|.-.++-+...+..+.++++=.|.|...+++.=+|++||+- .+.+.++|
T Consensus 10 v~G~VQGVGFR~~~~~~A~~lgl~G~VrN~~dGsVei~~qG~~~~i~~f~~~l 62 (92)
T PRK14430 10 AHGRVQGVGYRAACADAADDLGLGGWVRNRADGTVEVMASGTVRQLEALRAWM 62 (92)
T ss_pred EEEeecceeeHHHHHHHHHHhCCEEEEEECCCCcEEEEEEcCHHHHHHHHHHH
Confidence 3444445556667777777888899998776665699999974 34555555
No 55
>COG1254 AcyP Acylphosphatases [Energy production and conversion]
Probab=72.56 E-value=26 Score=23.50 Aligned_cols=52 Identities=15% Similarity=0.135 Sum_probs=37.2
Q ss_pred EeCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHH
Q 033711 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQ 99 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i~~~L~~ 99 (113)
|.|--.++.....++.....++-.|.|...+++.=+|.+||+--. +..|+..
T Consensus 10 V~GrVQGVGFR~~~~~~A~~lgl~G~V~N~~DGsVeiva~G~~~~-v~~~~~~ 61 (92)
T COG1254 10 VYGRVQGVGFRYFTRSEALRLGLTGWVKNLDDGSVEIVAEGPDEA-VEKFIEW 61 (92)
T ss_pred EEEEeccccHHHHHHHHHHHCCCEEEEEECCCCeEEEEEEcCHHH-HHHHHHH
Confidence 444445566667777777778889999887777679999999665 5555533
No 56
>TIGR02433 lysidine_TilS_C tRNA(Ile)-lysidine synthetase, C-terminal domain. TIGRFAMs model TIGR02432 describes the family of the N-terminal domain of tRNA(Ile)-lysidine synthetase. This family (TIGR02433) describes a small C-terminal domain of about 50 residues present in about half the members of family TIGR02432,and in no other protein. Characterized examples of tRNA(Ile)-lysidine synthetase from E. coli and Bacillus subtilis both contain this domain.
Probab=59.40 E-value=12 Score=21.13 Aligned_cols=27 Identities=22% Similarity=0.330 Sum_probs=21.9
Q ss_pred CCeEEEEcCC-hhHHHHHHHHHcCCCCC
Q 033711 79 LGQVIQLQGD-QRKNVSTFLVQAGIVKK 105 (113)
Q Consensus 79 ~g~~I~lQGD-~~~~i~~~L~~~G~~~~ 105 (113)
.|+.|.+.|. ...+|+++|.+.++|+.
T Consensus 8 ~gd~~~~~g~~~~k~lkk~~~e~kiP~~ 35 (47)
T TIGR02433 8 GGDRIKLLGRKGSKKLKKLFIDAKVPPW 35 (47)
T ss_pred CCCEEEECCCCCCchHHHHHHHcCCCHH
Confidence 3567888876 67899999999999763
No 57
>PF11388 DotA: Phagosome trafficking protein DotA; InterPro: IPR021528 DotA is essential for intracellular growth in Legionella []. DotA is thought to play an important role in regulating initial phagosome trafficking decisions either upon or immediately after macrophage uptake [].
Probab=56.07 E-value=6.9 Score=26.96 Aligned_cols=26 Identities=27% Similarity=0.539 Sum_probs=22.6
Q ss_pred EeCCC-CcccHHHHHHHHhhhcccccEEE
Q 033711 47 VQGLK-KEFSYNKILKDLKKEFCCNGTVV 74 (113)
Q Consensus 47 V~Gl~-~~~dlk~lak~lKkk~~cggsv~ 74 (113)
++||+ ..+|.+.|.|.|++. |.+...
T Consensus 4 ~tgle~s~fd~~ql~k~f~~t--c~~~~a 30 (105)
T PF11388_consen 4 NTGLEKSNFDPAQLTKPFGKT--CQGDYA 30 (105)
T ss_pred ccccccccCCHHHhhhhhhcc--ccCchH
Confidence 57999 889999999999996 888764
No 58
>PRK05412 putative nucleotide-binding protein; Reviewed
Probab=53.40 E-value=26 Score=26.08 Aligned_cols=55 Identities=24% Similarity=0.429 Sum_probs=37.1
Q ss_pred eeEEEEeCCCCcccHHHHHHHHhhh-cccccEEEeCCCCCeEEEEcCChhH---HHHHHHHHcCC
Q 033711 42 KSLTTVQGLKKEFSYNKILKDLKKE-FCCNGTVVQDPELGQVIQLQGDQRK---NVSTFLVQAGI 102 (113)
Q Consensus 42 K~VT~V~Gl~~~~dlk~lak~lKkk-~~cggsv~~~~~~g~~I~lQGD~~~---~i~~~L~~~G~ 102 (113)
-.+|+..||+.+ ..+++.|.+|-. +=.-+++. |++|-|.|-.|+ .++++|.+..+
T Consensus 92 q~i~lk~GI~~e-~AKkIvK~IKd~klKVqa~IQ-----Gd~vRVtgKkrDDLQ~viallk~~d~ 150 (161)
T PRK05412 92 QEVKLKQGIDQE-LAKKIVKLIKDSKLKVQAQIQ-----GDQVRVTGKKRDDLQAVIALLRKADL 150 (161)
T ss_pred EEEehhhccCHH-HHHHHHHHHHhcCCceeEEec-----CcEEEEecCCHhHHHHHHHHHHhccC
Confidence 578888999832 366666666632 22455554 679999997666 67778877544
No 59
>COG1601 GCD7 Translation initiation factor 2, beta subunit (eIF-2beta)/eIF-5 N-terminal domain [Translation, ribosomal structure and biogenesis]
Probab=46.53 E-value=35 Score=25.09 Aligned_cols=53 Identities=19% Similarity=0.222 Sum_probs=38.0
Q ss_pred eEEEEeCCC-----CcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCCh-hHHHHHHHHH
Q 033711 43 SLTTVQGLK-----KEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQ-RKNVSTFLVQ 99 (113)
Q Consensus 43 ~VT~V~Gl~-----~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~-~~~i~~~L~~ 99 (113)
..|++.++. -.-|++-+++.|++.++++|++.. ...+.+||-. +..|.+.|..
T Consensus 42 ~~Ti~~Nf~dia~~l~rDp~h~~k~l~kel~t~g~~d~----~~rlvl~g~f~~~~i~~~i~~ 100 (151)
T COG1601 42 NRTIIRNFGDIAEALNRDPEHLVKFLKKELGTAGSIDG----KGRLVLQGKFSDSEIVNEIER 100 (151)
T ss_pred chhHHHhHHHHHHHhcCCHHHHHHHHHHHhccccccCC----cceEEEEecccHHHHHHHHHH
Confidence 446676654 245799999999999999999863 1578888874 4455555554
No 60
>PF00691 OmpA: OmpA family; InterPro: IPR006665 This entry represents domain with a beta/alpha/beta/alpha-beta(2) structure found in the C-terminal region of many Gram-negative bacterial outer membrane proteins [], such as porin-like integral membrane proteins (such as ompA) [], small lipid-anchored proteins (such as pal) [], and MotB proton channels []. The N-terminal half is variable although some of the proteins in this group have the OmpA-like transmembrane domain IPR000498 from INTERPRO at the N terminus. OmpA from Escherichia coli is required for pathogenesis, and can interact with host receptor molecules []. MotB (and MotA) serves two functions in E. coli, the MotA(4)-MotB(2) complex attaches to the cell wall via MotB to form the stator of the flagellar motor, and the MotA-MotB complex couples the flow of ions across the cell membrane to movement of the rotor [].; GO: 0009279 cell outer membrane; PDB: 1OAP_A 2W8B_G 2HQS_C 4ERH_A 2ZF8_A 2ZOV_A 2ZVZ_B 2ZVY_A 3TD4_B 3TD5_D ....
Probab=45.61 E-value=14 Score=23.46 Aligned_cols=22 Identities=36% Similarity=0.613 Sum_probs=16.9
Q ss_pred hHHHHHHHHHcCCCCCCCeeecC
Q 033711 90 RKNVSTFLVQAGIVKKEHIKMHG 112 (113)
Q Consensus 90 ~~~i~~~L~~~G~~~~~~I~ihg 112 (113)
-..|+++|...|++ ++.|.+.|
T Consensus 56 A~~V~~~L~~~gi~-~~ri~~~~ 77 (97)
T PF00691_consen 56 AEAVKQYLVENGIP-PERISVVG 77 (97)
T ss_dssp HHHHHHHHHHTTSS-GGGEEEEE
T ss_pred HHHHHHHHHHcCCC-hHhEEEEE
Confidence 35789999999995 66787654
No 61
>PF00381 PTS-HPr: PTS HPr component phosphorylation site; InterPro: IPR005698 The histidine-containing phosphocarrier protein (HPr) is a central component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), which transfers metabolic carbohydrates across the cell membrane in many bacterial species [, ]. PTS catalyses the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane. The general mechanism of the PTS is as follows: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred to Enzyme I (EI) of the PTS, which in turn transfers it to the phosphoryl carrier protein (HPr) [, ]. Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease complex (enzymes EII/EIII). HPr [, ] is a small cytoplasmic protein of 70 to 90 amino acid residues. In some bacteria, HPr is a domain in a larger protein that includes a EIII(Fru) (IIA) domain and in some cases also the EI domain. A conserved histidine in the N-terminal section of HPr serves as an acceptor for the phosphoryl group of EI. In the central part of HPr, there is a conserved serine which (in Gram-positive bacteria only) is phosphorylated by an ATP-dependent protein kinase; a process which probably play a regulatory role in sugar transport. The overall architecture of the HPr domain has been described as an open faced beta-sandwich in which a beta-sheet is packed against three alpha-helices. Regulatory phosphorylation at the conserved Ser residue does not appear to induce large structural changes to the HPr domain, in particular in the region of the active site [, ].; GO: 0005351 sugar:hydrogen symporter activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TXE_A 1QR5_A 1RZR_S 2NZU_L 2OEN_L 2NZV_L 1Y51_B 1Y4Y_A 1Y50_A 2HPR_A ....
Probab=44.50 E-value=71 Score=20.24 Aligned_cols=48 Identities=15% Similarity=0.199 Sum_probs=29.7
Q ss_pred eEEEEeCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHH
Q 033711 43 SLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQ 99 (113)
Q Consensus 43 ~VT~V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i~~~L~~ 99 (113)
.|++..+ ...+|.+.+...+.=...||..+ +|.++|+.-+.+.+-|.+
T Consensus 32 ~i~i~~~-~~~vdakSil~l~~L~~~~G~~i--------~i~~~G~de~~a~~~i~~ 79 (84)
T PF00381_consen 32 DITIRKG-GKTVDAKSILGLMSLGAKKGDEI--------EIEAEGEDEEEALEAIAE 79 (84)
T ss_dssp EEEEEET-TEEEETTSHHHHHHHTBSTTEEE--------EEEEESTTHHHHHHHHHH
T ss_pred EEEEEeC-ceeEecCCHHHHhhhhcCCCCEE--------EEEEECcCHHHHHHHHHH
Confidence 3444433 24456666666666555555555 488899988777776654
No 62
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=44.05 E-value=36 Score=20.62 Aligned_cols=22 Identities=18% Similarity=0.160 Sum_probs=18.8
Q ss_pred EEEEcC-ChhHHHHHHHHHcCCC
Q 033711 82 VIQLQG-DQRKNVSTFLVQAGIV 103 (113)
Q Consensus 82 ~I~lQG-D~~~~i~~~L~~~G~~ 103 (113)
.|++++ +|.+.+.+-|.+.||.
T Consensus 43 ~ie~~~~~~~~~i~~~L~~~G~~ 65 (68)
T cd04885 43 GIQVPDREDLAELKERLEALGYP 65 (68)
T ss_pred EEEeCCHHHHHHHHHHHHHcCCC
Confidence 578888 7999999999999984
No 63
>PRK10897 phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr); Provisional
Probab=39.79 E-value=1.1e+02 Score=20.15 Aligned_cols=40 Identities=13% Similarity=0.162 Sum_probs=29.9
Q ss_pred CcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHH
Q 033711 52 KEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQ 99 (113)
Q Consensus 52 ~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i~~~L~~ 99 (113)
...|.|.+...|.=...||..| +|.+.|+.-++..+-|.+
T Consensus 42 ~~~~akSil~lm~Lg~~~G~~i--------~v~~~G~De~~A~~~l~~ 81 (90)
T PRK10897 42 TEAEANSVIALLMLDSAKGRQI--------EVEATGPQEEEALAAVIA 81 (90)
T ss_pred cEEchHhHHHHHHhCCCCCCEE--------EEEEECcCHHHHHHHHHH
Confidence 3467888888888777777777 488999987776665544
No 64
>COG3317 NlpB Uncharacterized lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=38.38 E-value=2e+02 Score=23.99 Aligned_cols=87 Identities=16% Similarity=0.196 Sum_probs=59.9
Q ss_pred CCCCcceEEEEEEE-ecCCeeEEE----------------EeCCCCcccHHHHHHHHhhhcccccEEEeCCC-CCeEEEE
Q 033711 24 GAGSKEYVHIRVQQ-RNGRKSLTT----------------VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPE-LGQVIQL 85 (113)
Q Consensus 24 ~~~~~~~I~I~~e~-R~g~K~VT~----------------V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~-~g~~I~l 85 (113)
..+....+.|++++ ++.++..|. |.+|. ..+.++.+..+.+.+...|++--... ++..+.+
T Consensus 162 ~tg~~~a~~VrI~~~~q~g~v~~~~~a~kqry~s~~~n~iv~~ld-~a~~~~~~~~~sr~~~~l~~~~~~d~~g~p~Li~ 240 (342)
T COG3317 162 STGYQDAFTVRILQGKQTGKVFTPHAADKQRYSSEMLNQIVWGLD-KSDPDEEAAFLSRLMQTLGVQSAADDTGLPVLIV 240 (342)
T ss_pred ccCceeeEEEEEecccccceEeccchhhhhhhcccchhceecccC-cccHHHHHHHHHhhhhhcCccccccccCCceEEE
Confidence 35777888898886 445676665 33333 23577778888888777777743333 5679999
Q ss_pred cCChh---HHHHHHHHHcCCCCCCCeeec
Q 033711 86 QGDQR---KNVSTFLVQAGIVKKEHIKMH 111 (113)
Q Consensus 86 QGD~~---~~i~~~L~~~G~~~~~~I~ih 111 (113)
||+.- .++-..|.+.||.-.+...-.
T Consensus 241 ~~pfd~~W~rl~~aLdkvg~~V~d~nrsq 269 (342)
T COG3317 241 RGPFDRVWQRLPAALDKVGFTVTDRNRSQ 269 (342)
T ss_pred eCCcchHHHHHHHhHhhcCCEeecccccc
Confidence 99965 477888988998666655433
No 65
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=35.53 E-value=47 Score=21.15 Aligned_cols=21 Identities=14% Similarity=0.170 Sum_probs=18.4
Q ss_pred EEEEcC--ChhHHHHHHHHHcCC
Q 033711 82 VIQLQG--DQRKNVSTFLVQAGI 102 (113)
Q Consensus 82 ~I~lQG--D~~~~i~~~L~~~G~ 102 (113)
.|++.+ ++.+.+.+.|.+.||
T Consensus 45 ~ie~~~~~~~~~~i~~~L~~~G~ 67 (85)
T cd04906 45 GVSVANGAEELAELLEDLKSAGY 67 (85)
T ss_pred EEEeCCcHHHHHHHHHHHHHCCC
Confidence 467777 899999999999998
No 66
>TIGR02802 Pal_lipo peptidoglycan-associated lipoprotein. Members of this protein are Pal (also called OprL), the Peptidoglycan-Associated Lipoprotein of the Tol-Pal system. The system appears to be involved both in the maintenance of outer membrane integrity and in the import of certain organic molecules as nutrients. Members of this family contain a hydrodrophobic lipoprotein signal sequence, a conserved N-terminal cleavage and modification site, a poorly conserved low-complexity region, together comprising about 65 amino acids, and a well-conserved C-terminal domain. The seed alignment for this model includes only the conserved C-terminal domain.
Probab=35.42 E-value=22 Score=23.17 Aligned_cols=23 Identities=17% Similarity=0.426 Sum_probs=17.1
Q ss_pred hHHHHHHHHHcCCCCCCCeeecCC
Q 033711 90 RKNVSTFLVQAGIVKKEHIKMHGF 113 (113)
Q Consensus 90 ~~~i~~~L~~~G~~~~~~I~ihg~ 113 (113)
-..|+++|.+.|+ +++.|.+.|+
T Consensus 57 A~~V~~~L~~~gi-~~~ri~~~g~ 79 (104)
T TIGR02802 57 ANAVKDYLQAKGV-SASQIETVSY 79 (104)
T ss_pred HHHHHHHHHHcCC-CHHHeEEEee
Confidence 3568889999999 5567777553
No 67
>cd02394 vigilin_like_KH K homology RNA-binding domain_vigilin_like. The vigilin family is a large and extended family of multiple KH-domain proteins, including vigilin, also called high density lipoprotein binding protien (HBP), fungal Scp160 and bicaudal-C. Yeast Scp160p has been shown to bind RNA and to associate with both soluble and membrane-bound polyribosomes as a mRNP component. Bicaudal-C is a RNA-binding molecule believed to function in embryonic development at the post-transcriptional level. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=32.26 E-value=1.1e+02 Score=17.88 Aligned_cols=35 Identities=14% Similarity=0.187 Sum_probs=19.5
Q ss_pred HHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHH
Q 033711 61 KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTF 96 (113)
Q Consensus 61 k~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i~~~ 96 (113)
+.|...++|.-.+.........|.|.|. .+.+...
T Consensus 23 ~~i~~~~g~~I~i~~~~~~~~~v~I~G~-~~~v~~A 57 (62)
T cd02394 23 RKIMEETGVKIRFPDPGSKSDTITITGP-KENVEKA 57 (62)
T ss_pred HHHHHHhCCEEEcCCCCCCCCEEEEEcC-HHHHHHH
Confidence 4555664444444322223468999999 4555543
No 68
>KOG0436 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=31.92 E-value=31 Score=30.02 Aligned_cols=33 Identities=24% Similarity=0.435 Sum_probs=25.2
Q ss_pred eEEEEcCChhHHH-----HHHHHHcCCCCCCCeeecCC
Q 033711 81 QVIQLQGDQRKNV-----STFLVQAGIVKKEHIKMHGF 113 (113)
Q Consensus 81 ~~I~lQGD~~~~i-----~~~L~~~G~~~~~~I~ihg~ 113 (113)
..+.|=|.-.-+. -+||...|+|.+++|.+||+
T Consensus 300 at~HvIGKDIlrFHavYWPafLmaAGlplP~~I~vHgh 337 (578)
T KOG0436|consen 300 ATLHVIGKDILRFHAVYWPAFLMAAGLPLPKMIFVHGH 337 (578)
T ss_pred ceeeehhhhhhhhhhhhhHHHHHhcCCCCccEEEEeee
Confidence 3677777644333 46899999999999999993
No 69
>PHA02450 hypothetical protein
Probab=31.08 E-value=23 Score=21.36 Aligned_cols=9 Identities=56% Similarity=1.257 Sum_probs=7.6
Q ss_pred CCCCCcccc
Q 033711 9 PAAFDPFAD 17 (113)
Q Consensus 9 ~~~fdp~~~ 17 (113)
|+.||||--
T Consensus 31 pg~fdpfcp 39 (53)
T PHA02450 31 PGQFDPFCP 39 (53)
T ss_pred CCccCCCCC
Confidence 888999973
No 70
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=30.76 E-value=56 Score=17.93 Aligned_cols=17 Identities=18% Similarity=0.364 Sum_probs=13.8
Q ss_pred HHHHHHHHHcCCCCCCC
Q 033711 91 KNVSTFLVQAGIVKKEH 107 (113)
Q Consensus 91 ~~i~~~L~~~G~~~~~~ 107 (113)
..+.++|.+.|++.++.
T Consensus 7 ~~L~~wL~~~gi~~~~~ 23 (38)
T PF10281_consen 7 SDLKSWLKSHGIPVPKS 23 (38)
T ss_pred HHHHHHHHHcCCCCCCC
Confidence 57899999999976653
No 71
>PF04461 DUF520: Protein of unknown function (DUF520); InterPro: IPR007551 This entry represents the UPF0234 family of uncharacterised proteins.; PDB: 1IN0_A.
Probab=30.00 E-value=1.3e+02 Score=22.47 Aligned_cols=56 Identities=21% Similarity=0.466 Sum_probs=30.3
Q ss_pred CeeEEEEeCCCCcccHHHHHHHHhhh-cccccEEEeCCCCCeEEEEcCChhHH---HHHHHHHcCC
Q 033711 41 RKSLTTVQGLKKEFSYNKILKDLKKE-FCCNGTVVQDPELGQVIQLQGDQRKN---VSTFLVQAGI 102 (113)
Q Consensus 41 ~K~VT~V~Gl~~~~dlk~lak~lKkk-~~cggsv~~~~~~g~~I~lQGD~~~~---i~~~L~~~G~ 102 (113)
|..+|+.+||+.+ ..+++.|.+|.. +=.-+++. |++|-|.|-.|+. +.++|.+..+
T Consensus 91 rq~i~lk~GI~~d-~AKkIvK~IKd~klKVqa~IQ-----gd~vRVtgKkrDDLQ~viallk~~d~ 150 (160)
T PF04461_consen 91 RQVIKLKQGIDQD-TAKKIVKLIKDSKLKVQAQIQ-----GDQVRVTGKKRDDLQEVIALLKEQDL 150 (160)
T ss_dssp EEEEEE--S--HH-HHHHHHHHHHHH--SEEEEEE-----TTEEEEEES-HHHHHHHHHHHHHS--
T ss_pred EEEEEeecccCHH-HHHHHHHHHHhcCCceeEEec-----CcEEEEecCCHHHHHHHHHHHHcccC
Confidence 3578999999832 355666655532 22455554 5788888887775 4557777544
No 72
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=29.56 E-value=1.6e+02 Score=19.94 Aligned_cols=59 Identities=17% Similarity=0.245 Sum_probs=38.6
Q ss_pred eeEEEEeCCCCcccHHHHHHHHhhhcccccEEEeC--------------CCCCeEEEEcCChhHHHHHHHHHcCCCCC
Q 033711 42 KSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQD--------------PELGQVIQLQGDQRKNVSTFLVQAGIVKK 105 (113)
Q Consensus 42 K~VT~V~Gl~~~~dlk~lak~lKkk~~cggsv~~~--------------~~~g~~I~lQGD~~~~i~~~L~~~G~~~~ 105 (113)
.+||+- |++.. +...++.+|++ ||.-+... +.++.+|.|+=|.+......|.+-|-.-.
T Consensus 7 ~wVtVF-Gfp~~-~~~~Vl~~F~~---~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~ 79 (100)
T PF05172_consen 7 TWVTVF-GFPPS-ASNQVLRHFSS---FGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFS 79 (100)
T ss_dssp CEEEEE----GG-GHHHHHHHHHC---CS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEET
T ss_pred eEEEEE-ccCHH-HHHHHHHHHHh---cceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEc
Confidence 466655 88844 67778888874 55544432 34678999999999999999998874333
No 73
>PF15538 Toxin_61: Putative toxin 61
Probab=29.52 E-value=47 Score=24.66 Aligned_cols=37 Identities=24% Similarity=0.477 Sum_probs=30.4
Q ss_pred HHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHHcCCCCC
Q 033711 62 DLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKK 105 (113)
Q Consensus 62 ~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i~~~L~~~G~~~~ 105 (113)
.|-++||-+|.+.. .|-|.|+ ++.+.+|+.+.||.++
T Consensus 4 yln~kfgrtg~l~~------dinirgn-~e~a~~F~~s~G~~~~ 40 (157)
T PF15538_consen 4 YLNEKFGRTGDLNH------DINIRGN-REIASDFFKSQGLTEA 40 (157)
T ss_pred Hhhhhhcccccccc------ceeeccc-hHHHHHHHHHcCCCHH
Confidence 46789999999964 6999997 5778899999999654
No 74
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=28.92 E-value=3.1e+02 Score=22.17 Aligned_cols=63 Identities=14% Similarity=0.163 Sum_probs=36.5
Q ss_pred eEEEEeCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHHcCCCCCCCeeecCC
Q 033711 43 SLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 113 (113)
Q Consensus 43 ~VT~V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i~~~L~~~G~~~~~~I~ihg~ 113 (113)
.+..|..|...-.+..+.+.++.-..-+-.+. -.|.=.|+.++.+.++..+.|+ .++|.++|+
T Consensus 224 ~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~------l~ivG~G~~~~~l~~~~~~~~l--~~~V~~~G~ 286 (406)
T PRK15427 224 EIISVARLTEKKGLHVAIEACRQLKEQGVAFR------YRILGIGPWERRLRTLIEQYQL--EDVVEMPGF 286 (406)
T ss_pred EEEEEeCcchhcCHHHHHHHHHHHHhhCCCEE------EEEEECchhHHHHHHHHHHcCC--CCeEEEeCC
Confidence 45556666633344455555543311111121 1344457788899998888888 568888885
No 75
>PRK10560 hofQ outer membrane porin HofQ; Provisional
Probab=27.93 E-value=2.1e+02 Score=23.40 Aligned_cols=57 Identities=11% Similarity=0.188 Sum_probs=43.8
Q ss_pred cccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCC--hhHHHHHHHHHcCCCCCCCeeec
Q 033711 53 EFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGD--QRKNVSTFLVQAGIVKKEHIKMH 111 (113)
Q Consensus 53 ~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD--~~~~i~~~L~~~G~~~~~~I~ih 111 (113)
-.+.+++++.++.-+.-.|++.-++..+ .|.+.|. ..+++.++|.+.-.+. .||.|.
T Consensus 100 ya~A~el~~~l~~ll~~~g~v~~d~~tN-sLiv~~~~~~~~~i~~li~~lD~~~-~QV~Ie 158 (386)
T PRK10560 100 YADAGELAKAGEKLLSAKGSMTVDKRTN-RLLLRDNKTALSALEQWVAQMDLPV-GQVELA 158 (386)
T ss_pred CCCHHHHHhhhcccccCCcEEEEEcCCC-EEEEEcCHHHHHHHHHHHHHhCCCC-ceEEEE
Confidence 3578888998888888888988765544 7999987 5668888999887754 587764
No 76
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=27.64 E-value=2.1e+02 Score=21.22 Aligned_cols=62 Identities=24% Similarity=0.358 Sum_probs=39.5
Q ss_pred CCeeEEEEeCCCCcccHHHHHHHHhh---hcccccEEEeCCCCCeEEE---EcCChhHHHHHHHHHcCC
Q 033711 40 GRKSLTTVQGLKKEFSYNKILKDLKK---EFCCNGTVVQDPELGQVIQ---LQGDQRKNVSTFLVQAGI 102 (113)
Q Consensus 40 g~K~VT~V~Gl~~~~dlk~lak~lKk---k~~cggsv~~~~~~g~~I~---lQGD~~~~i~~~L~~~G~ 102 (113)
.+-.+++.+|=.+. ....+++.|.- -.+|+|++.-+...++.|. +.-+...++.+++.+.++
T Consensus 35 ~G~~~~iaTGR~~~-~~~~~~~~l~~~~~~I~~NGa~i~d~~~~~~l~~~~l~~~~~~~i~~~~~~~~~ 102 (272)
T PRK10530 35 AGYKVIIVTGRHHV-AIHPFYQALALDTPAICCNGTYLYDYQAKKVLEADPLPVQQALQVIEMLDEHQI 102 (272)
T ss_pred CCCEEEEEcCCChH-HHHHHHHhcCCCCCEEEcCCcEEEecCCCEEEEecCCCHHHHHHHHHHHHhCCc
Confidence 44689999998732 35566677653 3678888876544444332 333666777777777654
No 77
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=27.40 E-value=2.4e+02 Score=21.57 Aligned_cols=46 Identities=9% Similarity=0.158 Sum_probs=33.2
Q ss_pred HHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHHcCCCCCCCeeec
Q 033711 56 YNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMH 111 (113)
Q Consensus 56 lk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i~~~L~~~G~~~~~~I~ih 111 (113)
+..+++...+.+..+|.+. ++.-=++.+.+.++|.+.|+ ...|..|
T Consensus 195 ~~~i~~~a~~~L~~gG~l~--------l~~~~~~~~~v~~~l~~~g~--~~~~~~~ 240 (251)
T TIGR03704 195 LRRVAAGAPDWLAPGGHLL--------VETSERQAPLAVEAFARAGL--IARVASS 240 (251)
T ss_pred HHHHHHHHHHhcCCCCEEE--------EEECcchHHHHHHHHHHCCC--CceeeEc
Confidence 5677777777877788774 55555788899999999998 3344444
No 78
>PF11734 TilS_C: TilS substrate C-terminal domain; InterPro: IPR012796 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of lysidine-tRNA(Ile) synthetase, which ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. The N-terminal region contains the highly conserved SGGXDS motif, predicted to be a PP-loop motif involved in ATP binding. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) versus AUG (Met) and UGA (stop) versus UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This domain is found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain architecture of this protein is variable; some, including characterised proteins of Escherichia coli and Bacillus subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family. It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer). The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, E. coli NtrL, and B. subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain. The HUP domain class (after HIGH-signature proteins, UspA, and PP-ATPase) groups together PP-loop ATPases, the nucleotide-binding domains of class I aminoacyl-tRNA synthetases, UspA protein (USPA domains), photolyases, and electron transport flavoproteins (ETFP). The HUP domain is a distinct class of alpha/beta domain[]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016879 ligase activity, forming carbon-nitrogen bonds, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3A2K_A 3HJ7_A 1NI5_A.
Probab=27.12 E-value=31 Score=21.65 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=19.9
Q ss_pred CCeEEEEcCC-hhHHHHHHHHHcCCCC
Q 033711 79 LGQVIQLQGD-QRKNVSTFLVQAGIVK 104 (113)
Q Consensus 79 ~g~~I~lQGD-~~~~i~~~L~~~G~~~ 104 (113)
.|+.|.+.|. ++.+|+++|.+.++|+
T Consensus 8 ~gdri~~~g~~~~k~lKk~~~e~kIP~ 34 (74)
T PF11734_consen 8 PGDRIRPAGRGGSKKLKKLFQEAKIPP 34 (74)
T ss_dssp TTSEEEBTTSSSEEEHHHHHHHCT--H
T ss_pred CCCEEEECCCCCCchHHHHHHHcCCCH
Confidence 4667888776 5799999999999975
No 79
>cd01026 TOPRIM_OLD TOPRIM_OLD: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in bacterial and archaeal nucleases of the OLD (overcome lysogenization defect) family. The bacteriophage P2 OLD protein, which has DNase as well as RNase activity, consists of an N-terminal ABC-type ATPase domain and a C-terminal Toprim domain; the nuclease activity of OLD is stimulated by ATP, though the ATPase activity is not DNA-dependent. Functional details on OLD are scant and further experimentation is required to define the relationship between the ATPase and Toprim nuclease domains. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). The conserved glutamate may act as a general acid in strand cleavage by nucleases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=27.04 E-value=1.7e+02 Score=18.85 Aligned_cols=54 Identities=22% Similarity=0.282 Sum_probs=36.0
Q ss_pred eeEEEEeCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHHcCCC
Q 033711 42 KSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIV 103 (113)
Q Consensus 42 K~VT~V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i~~~L~~~G~~ 103 (113)
+.|-+|+|-.+..=+..+++.+.+.+.-.+. ..|.+.|........+|...|++
T Consensus 4 ~~vIlVEG~tE~~~l~~~~~~~~~~~~~~~i--------~ii~~gG~~~~~~~~ll~~~~i~ 57 (97)
T cd01026 4 DKVILVEGDSEEILLPALAKKLGLDLDEAGI--------SIIPVGGKNFKPFIKLLNALGIP 57 (97)
T ss_pred CeEEEEecHHHHHHHHHHHHHhCCCHHHCCE--------EEEEeCCcchHHHHHHHHHcCCC
Confidence 5678899987555577777776322211111 36778888777788888888883
No 80
>PF03958 Secretin_N: Bacterial type II/III secretion system short domain; InterPro: IPR005644 This is a group of NolW-like proteins, which are closely related to bacterial type II and III secretion system protein (IPR004846 from INTERPRO).; PDB: 3EZJ_C 2Y3M_A 3OSS_D.
Probab=26.40 E-value=1.6e+02 Score=17.93 Aligned_cols=46 Identities=15% Similarity=0.279 Sum_probs=30.7
Q ss_pred ccHHHHHHHHhhhcc--------------------cccEEEeCCCCCeEEEEcCC--hhHHHHHHHHHc
Q 033711 54 FSYNKILKDLKKEFC--------------------CNGTVVQDPELGQVIQLQGD--QRKNVSTFLVQA 100 (113)
Q Consensus 54 ~dlk~lak~lKkk~~--------------------cggsv~~~~~~g~~I~lQGD--~~~~i~~~L~~~ 100 (113)
.+.+++++.|+.-++ -++++.-++..+ .|.|.|. ..+.|.+++.+.
T Consensus 9 ~~A~~v~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~tN-sliv~g~~~~~~~i~~li~~L 76 (82)
T PF03958_consen 9 ASAEEVASVLQQLLGGGSGSSSGSGGSSGSGSSGSSSGRIVADERTN-SLIVRGTPEDLEQIRELIKQL 76 (82)
T ss_dssp S-HHHHHHHHHHHH----------------S-HHHTTTEEEEECTTT-EEEEEEEHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHhhhhcccccccccccccccCCCCCeEEEEECCCC-EEEEEeCHHHHHHHHHHHHHH
Confidence 467888888888883 456666555444 7888887 455777777654
No 81
>PRK13434 F0F1 ATP synthase subunit delta; Provisional
Probab=26.32 E-value=1.3e+02 Score=22.00 Aligned_cols=49 Identities=20% Similarity=0.207 Sum_probs=34.4
Q ss_pred ecCCeeEEEEeCCC-CcccHHHHHHHHhhhcccccEEE--eCCC--CCeEEEEc
Q 033711 38 RNGRKSLTTVQGLK-KEFSYNKILKDLKKEFCCNGTVV--QDPE--LGQVIQLQ 86 (113)
Q Consensus 38 R~g~K~VT~V~Gl~-~~~dlk~lak~lKkk~~cggsv~--~~~~--~g~~I~lQ 86 (113)
.+|...+|+.+-.+ .+-..+++.+.|++++++.-.+. .+|. +|-.|++.
T Consensus 101 ~~~~~~~~V~sA~~Ls~~q~~~l~~~L~k~~g~~v~l~~~vDpsLIGG~ii~ig 154 (184)
T PRK13434 101 KKGRVRAQIVSYPSLEPAQVDKLGSILSEKFKSEFILEVSEDKNLLGGFVVQFN 154 (184)
T ss_pred HcCeEEEEEEEcCCCCHHHHHHHHHHHHHHHCCEeEEEeeeChHHcCceEEEEC
Confidence 45667888888887 66679999999999988755443 3443 55455553
No 82
>PF06918 DUF1280: Protein of unknown function (DUF1280); InterPro: IPR009689 This family represents a conserved region approximately 200 residues long within a number of proteins of unknown function that seem to be specific to Caenorhabditis elegans.
Probab=26.23 E-value=1.7e+02 Score=22.68 Aligned_cols=80 Identities=21% Similarity=0.296 Sum_probs=44.2
Q ss_pred CCCccccccccCC---CCCCcceEEEEEEEec----CCeeEEEEeCCCCcccHHHHHHHHhhhcccccEEEeCCCCCe--
Q 033711 11 AFDPFADAKAEDS---GAGSKEYVHIRVQQRN----GRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQ-- 81 (113)
Q Consensus 11 ~fdp~~~~~~~~~---~~~~~~~I~I~~e~R~----g~K~VT~V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~-- 81 (113)
.||||.-..+-.+ .-.......|..+... ++|.||+++=+-.--|++.++..-=..++-++-+..+...++
T Consensus 82 g~Dvf~Sr~~i~~l~k~~s~~~~y~i~~~~~~k~~~~g~~v~v~~~~v~~~dv~~~l~~rle~l~~~~~L~~~~~t~d~I 161 (224)
T PF06918_consen 82 GFDVFPSRKSIDELEKKVSSIDDYEISTEKITKKTGSGKEVTVVTCVVSIKDVEKLLSRRLEQLSKSGKLIFDDGTGDEI 161 (224)
T ss_pred CCCCCCCHHHHHHHHHhcCcccceEEEEEEccccCCCCeEEEEEEEEEEecCHHHHHHHHHHHHHHcCCceeCCCCCCCE
Confidence 5788865533222 1233344455544433 468888886443333666666655556666666665543333
Q ss_pred EEEEcCChh
Q 033711 82 VIQLQGDQR 90 (113)
Q Consensus 82 ~I~lQGD~~ 90 (113)
+|-|-||..
T Consensus 162 ~l~igGDkG 170 (224)
T PF06918_consen 162 WLGIGGDKG 170 (224)
T ss_pred EEEEcccCC
Confidence 566668854
No 83
>PF04739 AMPKBI: 5'-AMP-activated protein kinase beta subunit, interation domain; InterPro: IPR006828 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This interaction domain is found in the beta subunit of the 5-AMP-activated protein kinase complex, and its yeast homologues Sip1, Sip2 and Gal83, which are found in the SNF1 kinase complex []. This region is sufficient for interaction of this subunit with the kinase complex, but is not solely responsible for the interaction, and the interaction partner is not known []. The isoamylase domain (IPR004193 from INTERPRO) is sometimes found associated with proteins that contain this C-terminal domain.; GO: 0005515 protein binding; PDB: 2QRE_D 2OOY_B 2OOX_B 2QRD_D 2QR1_D 2QRC_D 1Z0N_C 4EAK_B 4EAL_B 4EAG_B ....
Probab=26.10 E-value=1.2e+02 Score=20.59 Aligned_cols=20 Identities=25% Similarity=0.270 Sum_probs=16.3
Q ss_pred cceEEEEEEEecCCeeEEEE
Q 033711 28 KEYVHIRVQQRNGRKSLTTV 47 (113)
Q Consensus 28 ~~~I~I~~e~R~g~K~VT~V 47 (113)
...+.+..-.|=++|.||+|
T Consensus 76 ~~v~al~~T~Ryk~KyVT~v 95 (100)
T PF04739_consen 76 DGVLALGTTHRYKSKYVTTV 95 (100)
T ss_dssp TTEEEEEEEEEETTEEEEEE
T ss_pred CCeEEEEEEEEecceEEEEE
Confidence 34677788888899999998
No 84
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=25.36 E-value=2.2e+02 Score=19.25 Aligned_cols=34 Identities=26% Similarity=0.303 Sum_probs=20.5
Q ss_pred eEEEEeCCCCcccHHHHHHHHhhhc-ccccEEEeC
Q 033711 43 SLTTVQGLKKEFSYNKILKDLKKEF-CCNGTVVQD 76 (113)
Q Consensus 43 ~VT~V~Gl~~~~dlk~lak~lKkk~-~cggsv~~~ 76 (113)
.+-.|.+|+...|...+...|++-+ .|||-|...
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v 37 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV 37 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE
Confidence 3567899996678888887777665 488887654
No 85
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=25.05 E-value=85 Score=23.78 Aligned_cols=45 Identities=13% Similarity=0.248 Sum_probs=32.4
Q ss_pred ccHHHHHHHHhhh-----cccccEEEeCCCCCeEEEEcCChhHHHHHHHHHcCC
Q 033711 54 FSYNKILKDLKKE-----FCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGI 102 (113)
Q Consensus 54 ~dlk~lak~lKkk-----~~cggsv~~~~~~g~~I~lQGD~~~~i~~~L~~~G~ 102 (113)
+..+++.+.+++. -+|||-+.. |+|=.+|-+....+...+.+.|+
T Consensus 19 ~t~eel~~~~~~~~~f~~~sggGVt~S----GGEPllq~~fl~~l~~~~k~~gi 68 (213)
T PRK10076 19 ITLDALEREVMKDDIFFRTSGGGVTLS----GGEVLMQAEFATRFLQRLRLWGV 68 (213)
T ss_pred cCHHHHHHHHHhhhHhhcCCCCEEEEe----CchHHcCHHHHHHHHHHHHHcCC
Confidence 5677787777764 167776655 56788888877777777777776
No 86
>PF14527 LAGLIDADG_WhiA: WhiA LAGLIDADG-like domain; PDB: 3HYI_A 3HYJ_D.
Probab=24.84 E-value=79 Score=20.89 Aligned_cols=40 Identities=20% Similarity=0.383 Sum_probs=19.1
Q ss_pred HhhhcccccEEEeCCCCCeEEEEcCC---hhHHHHHHHHHcCCC
Q 033711 63 LKKEFCCNGTVVQDPELGQVIQLQGD---QRKNVSTFLVQAGIV 103 (113)
Q Consensus 63 lKkk~~cggsv~~~~~~g~~I~lQGD---~~~~i~~~L~~~G~~ 103 (113)
|+-.|-++||+. +|..+.-+++.=+ ..+.+.++|.+.|++
T Consensus 5 lrG~Fl~~Gsi~-~P~~~YhLEi~~~~~e~a~~l~~lL~~~~i~ 47 (93)
T PF14527_consen 5 LRGAFLACGSIS-DPKKSYHLEIRFNDEEFAEQLKELLNKFGIN 47 (93)
T ss_dssp HHHHHHHHEEE---TTT---EEEEES-HHHHHHHHHHHHHH---
T ss_pred HHHHHHCCeecc-CCCCceEEEEecCCHHHHHHHHHHHHHcCCC
Confidence 455677788885 5654443443332 445666677777774
No 87
>PRK13780 phosphocarrier protein HPr; Provisional
Probab=24.50 E-value=2.1e+02 Score=18.63 Aligned_cols=42 Identities=10% Similarity=0.245 Sum_probs=29.0
Q ss_pred cccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHH----HHHHHHHcCC
Q 033711 53 EFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKN----VSTFLVQAGI 102 (113)
Q Consensus 53 ~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~----i~~~L~~~G~ 102 (113)
..|.+.+...|.=...||..+ +|.+.|+.-+. |.++|.+.|+
T Consensus 41 ~vdakSil~lm~Lg~~~G~~v--------~i~a~G~De~~Al~~l~~~l~~~~l 86 (88)
T PRK13780 41 SVNLKSIMGVMSLGVGQGADI--------TISAEGADAADAIAAIEETMKKEGL 86 (88)
T ss_pred EEechhHHHHHhcCCCCCCEE--------EEEEeCcCHHHHHHHHHHHHHhccc
Confidence 457788888887777777777 48888987666 4445555454
No 88
>PF00013 KH_1: KH domain syndrome, contains KH motifs.; InterPro: IPR018111 The K homology (KH) domain was first identified in the human heterogeneous nuclear ribonucleoprotein (hnRNP) K. It is a domain of around 70 amino acids that is present in a wide variety of quite diverse nucleic acid-binding proteins []. It has been shown to bind RNA [, ]. Like many other RNA-binding motifs, KH motifs are found in one or multiple copies (14 copies in chicken vigilin) and, at least for hnRNP K (three copies) and FMR-1 (two copies), each motif is necessary for in vitro RNA binding activity, suggesting that they may function cooperatively or, in the case of single KH motif proteins (for example, Mer1p), independently []. According to structural [, , ] analysis the KH domain can be separated in two groups. The first group or type-1 contain a beta-alpha-alpha-beta-beta-alpha structure, whereas in the type-2 the two last beta-sheet are located in the N-terminal part of the domain (alpha-beta-beta-alpha-alpha-beta). Sequence similarity between these two folds are limited to a short region (VIGXXGXXI) in the RNA binding motif. This motif is located between helice 1 and 2 in type-1 and between helice 2 and 3 in type-2. Proteins known to contain a type-1 KH domain include bacterial polyribonucleotide nucleotidyltransferases (2.7.7.8 from EC); vertebrate fragile X mental retardation protein 1 (FMR1); eukaryotic heterogeneous nuclear ribonucleoprotein K (hnRNP K), one of at least 20 major proteins that are part of hnRNP particles in mammalian cells; mammalian poly(rC) binding proteins; Artemia salina glycine-rich protein GRP33; yeast PAB1-binding protein 2 (PBP2); vertebrate vigilin; and human high-density lipoprotein binding protein (HDL-binding protein). More information about these proteins can be found at Protein of the Month: RNA Exosomes [].; GO: 0003723 RNA binding; PDB: 1TUA_A 2Z0S_A 1WE8_A 4AM3_B 4AIM_A 4AID_A 2HH3_A 2JVZ_A 1J4W_A 2HH2_A ....
Probab=24.31 E-value=1.4e+02 Score=17.19 Aligned_cols=36 Identities=14% Similarity=0.266 Sum_probs=23.7
Q ss_pred HHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHH
Q 033711 59 ILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTF 96 (113)
Q Consensus 59 lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i~~~ 96 (113)
..+.+.+.++|.-.+.+.+ ....|.|.| ..+.+.+.
T Consensus 21 ~i~~I~~~t~~~I~i~~~~-~~~~v~I~G-~~~~v~~A 56 (60)
T PF00013_consen 21 NIKEIEEETGVKIQIPDDD-ERDIVTISG-SPEQVEKA 56 (60)
T ss_dssp HHHHHHHHHTSEEEEESTT-EEEEEEEEE-SHHHHHHH
T ss_pred cHHHhhhhcCeEEEEcCCC-CcEEEEEEe-CHHHHHHH
Confidence 4577888877887775432 224899999 55555544
No 89
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=24.31 E-value=1.3e+02 Score=23.80 Aligned_cols=46 Identities=28% Similarity=0.411 Sum_probs=28.5
Q ss_pred HHHHHHHHhhhcccccEEEeCCCCCeEEEEcCC----hhHHHHHHHHHcCCCCCCCeeecC
Q 033711 56 YNKILKDLKKEFCCNGTVVQDPELGQVIQLQGD----QRKNVSTFLVQAGIVKKEHIKMHG 112 (113)
Q Consensus 56 lk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD----~~~~i~~~L~~~G~~~~~~I~ihg 112 (113)
+.++++.+++.+..--|++ |-+.=| ....+...|.+.|+ +.|+|||
T Consensus 110 ~~~iv~~~~~~~~~pvsvK--------iR~g~~~~~~~~~~~~~~l~~~G~---~~i~vH~ 159 (309)
T PF01207_consen 110 LAEIVKAVRKAVPIPVSVK--------IRLGWDDSPEETIEFARILEDAGV---SAITVHG 159 (309)
T ss_dssp HHHHHHHHHHH-SSEEEEE--------EESECT--CHHHHHHHHHHHHTT-----EEEEEC
T ss_pred hhHHHHhhhcccccceEEe--------cccccccchhHHHHHHHHhhhccc---ceEEEec
Confidence 6777788887766555554 222222 24566777788896 6899998
No 90
>KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones]
Probab=24.13 E-value=1e+02 Score=28.35 Aligned_cols=31 Identities=19% Similarity=0.542 Sum_probs=23.8
Q ss_pred EEEEcCChhHHHHHHHHHcCCCCCCCeeecCC
Q 033711 82 VIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 113 (113)
Q Consensus 82 ~I~lQGD~~~~i~~~L~~~G~~~~~~I~ihg~ 113 (113)
+|++- ||.+-+.-+-...||..-+-|.||||
T Consensus 704 qVE~e-DQVeglq~Laeq~gfidmdrV~vhGW 734 (867)
T KOG2281|consen 704 QVEVE-DQVEGLQMLAEQTGFIDMDRVGVHGW 734 (867)
T ss_pred eeeeh-hhHHHHHHHHHhcCcccchheeEecc
Confidence 44444 78887766666678999999999998
No 91
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=24.07 E-value=54 Score=20.94 Aligned_cols=28 Identities=18% Similarity=0.410 Sum_probs=19.4
Q ss_pred CeEEEEc---CChhHHHHHHHHH-cCCCCCCC
Q 033711 80 GQVIQLQ---GDQRKNVSTFLVQ-AGIVKKEH 107 (113)
Q Consensus 80 g~~I~lQ---GD~~~~i~~~L~~-~G~~~~~~ 107 (113)
+.+|++- -|..++|++-.++ +||||.+|
T Consensus 10 ~KeIeidIep~DkverIKErvEEkeGIPp~qq 41 (70)
T KOG0005|consen 10 GKEIEIDIEPTDKVERIKERVEEKEGIPPQQQ 41 (70)
T ss_pred cceEEEeeCcchHHHHHHHHhhhhcCCCchhh
Confidence 3445544 3677888887766 69988766
No 92
>cd00367 PTS-HPr_like Histidine-containing phosphocarrier protein (HPr)-like proteins. HPr is a central component of the bacterial phosphoenolpyruvate sugar phosphotransferase system (PTS). The PTS catalyses the phosphorylation of sugar substrates during their translocation across the cell membrane. The phosphoryl group from phosphoenolpyruvate is transferred to HPr by enzyme I (EI). Phospho-HPr then transfers the phosphoryl group to one of several sugar-specific phosphoprotein intermediates. The conserved histidine in the N-terminus of HPr serves as an acceptor for the phosphoryl group of EI. In addition to the phosphotransferase proteins HPr and E1, this family also includes the closely related Carbon Catabolite Repressor (CCR) proteins which use the same phosphorylation mechanism and interact with transcriptional regulators to control expression of genes coding for utilization of less favored carbon sources.
Probab=23.57 E-value=1.9e+02 Score=17.85 Aligned_cols=49 Identities=12% Similarity=0.181 Sum_probs=33.3
Q ss_pred eeEEEEeCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHH
Q 033711 42 KSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQ 99 (113)
Q Consensus 42 K~VT~V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i~~~L~~ 99 (113)
-.|++..+ ...+|.+.++..|.=...+|..+ +|.+.|+.-+.+.+-|.+
T Consensus 27 ~~v~i~~~-~~~vdakSil~i~~L~~~~G~~i--------~i~~~G~de~~al~~l~~ 75 (77)
T cd00367 27 SDITLRKG-GRKANAKSILGLMSLGAKQGDEI--------TLSAEGEDAEEALEALAE 75 (77)
T ss_pred CEEEEEEC-CEEEcHHhHHHHHHcCCCCCCEE--------EEEEECcCHHHHHHHHHH
Confidence 34555544 34668888888888666666666 378889877777666654
No 93
>PF12221 HflK_N: Bacterial membrane protein N terminal; InterPro: IPR020980 HflK is a bacterial membrane protein which is thought, together with the HflC protein, to form a membrane protease complex whose activity is modulated by the GTPase HflX []. This entry represents the N-terminal, membrane-spanning, region of of HflK responsible for anchoring the protein in the bacterial membrane. It is often found in association with PF01145 from PFAM.
Probab=23.55 E-value=62 Score=18.77 Aligned_cols=16 Identities=6% Similarity=0.310 Sum_probs=12.5
Q ss_pred cccHHHHHHHHhhhcc
Q 033711 53 EFSYNKILKDLKKEFC 68 (113)
Q Consensus 53 ~~dlk~lak~lKkk~~ 68 (113)
--||+++.+.|.++|+
T Consensus 20 PPDLdel~r~l~~kl~ 35 (42)
T PF12221_consen 20 PPDLDELFRKLQDKLG 35 (42)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 3478888888888875
No 94
>PRK13430 F0F1 ATP synthase subunit delta; Provisional
Probab=23.54 E-value=1.8e+02 Score=22.77 Aligned_cols=49 Identities=18% Similarity=0.251 Sum_probs=35.4
Q ss_pred ecCCeeEEEEeCCC-CcccHHHHHHHHhhhcccccEEE--eCCC--CCeEEEEc
Q 033711 38 RNGRKSLTTVQGLK-KEFSYNKILKDLKKEFCCNGTVV--QDPE--LGQVIQLQ 86 (113)
Q Consensus 38 R~g~K~VT~V~Gl~-~~~dlk~lak~lKkk~~cggsv~--~~~~--~g~~I~lQ 86 (113)
++|...+|+.+-.+ .+-..+.+.+.|+++++.--.+. .+|. +|-.|++-
T Consensus 197 ~~~~~~a~VtSA~pLs~~q~~~L~~~L~k~~g~~V~l~~~VDpsLIGGivI~vG 250 (271)
T PRK13430 197 RRGRSVATVTTAVPLSDEQKQRLAAALSRIYGRPVHLNSEVDPSVLGGMRVQVG 250 (271)
T ss_pred HcCeeEEEEEecCCCCHHHHHHHHHHHHHHHCCceEEEeeECccccCcEEEEEC
Confidence 56778889988888 67779999999999987655443 4454 55455553
No 95
>PF06753 Bradykinin: Bradykinin; InterPro: IPR009608 This family consists of several bradykinin sequences. The skins of anuran amphibians, in addition to mucus glands, contain highly specialised poison glands, which, in reaction to stress or attack, exude a complex noxious cocktail of biologically active molecules. These secretions often contain a plethora of peptides among which bradykinin or structural variants have been identified [].; GO: 0005179 hormone activity, 0006950 response to stress, 0005576 extracellular region
Probab=23.45 E-value=52 Score=15.92 Aligned_cols=12 Identities=33% Similarity=0.694 Sum_probs=9.0
Q ss_pred CCCCCccccccc
Q 033711 9 PAAFDPFADAKA 20 (113)
Q Consensus 9 ~~~fdp~~~~~~ 20 (113)
|.+|.||...+-
T Consensus 5 p~gftpfrgkfh 16 (19)
T PF06753_consen 5 PPGFTPFRGKFH 16 (19)
T ss_pred CCCCCccccccc
Confidence 668999986543
No 96
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=23.19 E-value=73 Score=22.56 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=18.8
Q ss_pred hHHHHHHHHHcCCCCCCCeeecCC
Q 033711 90 RKNVSTFLVQAGIVKKEHIKMHGF 113 (113)
Q Consensus 90 ~~~i~~~L~~~G~~~~~~I~ihg~ 113 (113)
.+.+++.|.+.|+ +++.|.+-|+
T Consensus 145 se~~~~~l~~~Gi-~~~~I~vtGi 167 (169)
T PF06925_consen 145 SEEVKEELIERGI-PPERIHVTGI 167 (169)
T ss_pred CHHHHHHHHHcCC-ChhHEEEeCc
Confidence 3678888889999 6889998874
No 97
>COG2885 OmpA Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Cell envelope biogenesis, outer membrane]
Probab=23.14 E-value=78 Score=22.98 Aligned_cols=22 Identities=32% Similarity=0.680 Sum_probs=17.4
Q ss_pred HHHHHHHHHcCCCCCCCeeecCC
Q 033711 91 KNVSTFLVQAGIVKKEHIKMHGF 113 (113)
Q Consensus 91 ~~i~~~L~~~G~~~~~~I~ihg~ 113 (113)
+.|+++|.+.|++.. +|.+-|+
T Consensus 141 ~aV~~~L~~~Gv~~~-~i~~~G~ 162 (190)
T COG2885 141 EAVADYLVSQGVVAD-RISTVGY 162 (190)
T ss_pred HHHHHHHHHcCCCcc-cEEEEEc
Confidence 478899999999655 8887664
No 98
>COG2080 CoxS Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]
Probab=23.06 E-value=78 Score=23.45 Aligned_cols=28 Identities=18% Similarity=0.281 Sum_probs=22.0
Q ss_pred CeeEEEEeCCC-CcccHHHHHHHHhhhcc
Q 033711 41 RKSLTTVQGLK-KEFSYNKILKDLKKEFC 68 (113)
Q Consensus 41 ~K~VT~V~Gl~-~~~dlk~lak~lKkk~~ 68 (113)
++.||+|+||. ....|..+-+.|....+
T Consensus 69 G~~ItTiEGl~~~~~~l~~vQ~Af~e~~~ 97 (156)
T COG2080 69 GAEITTIEGLAKKDGGLHPVQQAFLEHDA 97 (156)
T ss_pred CCeEEEeecccCCCCCcCHHHHHHHHcCC
Confidence 58999999999 65667888888877643
No 99
>PF08869 XisI: XisI protein; InterPro: IPR014968 The fdxN element, along with two other DNA elements, is excised from the chromosome during heterocyst differentiation in cyanobacteria. The xisH as well as the xisF and xisI genes are required []. ; PDB: 3D7Q_A 2NWV_A 2NVM_A 2NLV_B.
Probab=22.97 E-value=63 Score=22.57 Aligned_cols=29 Identities=34% Similarity=0.476 Sum_probs=20.9
Q ss_pred eEEEEcCChhH-HHHHHHHHcCCCCCCCeee
Q 033711 81 QVIQLQGDQRK-NVSTFLVQAGIVKKEHIKM 110 (113)
Q Consensus 81 ~~I~lQGD~~~-~i~~~L~~~G~~~~~~I~i 110 (113)
+-|=||=|..+ -|++-|.+.|+ |+++|++
T Consensus 66 gKIWIq~d~TE~gIa~eLve~GV-pk~dIVL 95 (111)
T PF08869_consen 66 GKIWIQRDGTEDGIAEELVEAGV-PKEDIVL 95 (111)
T ss_dssp TEEEEEEESSSSHHHHHHHHTT---GGGEEE
T ss_pred CeEEEEcCchhhHHHHHHHHcCC-CHHHEEE
Confidence 35777777666 78889999999 5667775
No 100
>PF06183 DinI: DinI-like family; InterPro: IPR010391 This family of short proteins includes DNA-damage-inducible protein I (DinI) and related proteins. The SOS response, a set of cellular phenomena exhibited by eubacteria, is initiated by various causes that include DNA damage-induced replication arrest, and is positively regulated by the co- protease activity of RecA. Escherichia coli DinI, a LexA-regulated SOS gene product, shuts off the initiation of the SOS response when overexpressed in vivo. Biochemical and genetic studies indicated that DinI physically interacts with RecA to inhibit its co-protease activity []. The structure of DinI is known [].; PDB: 1GHH_A.
Probab=22.29 E-value=2.1e+02 Score=17.85 Aligned_cols=43 Identities=14% Similarity=0.305 Sum_probs=26.2
Q ss_pred HHHHHHHHhhhcccccEEEeCCCCCeEEEEcCCh---hHHHHHHHHH
Q 033711 56 YNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQ---RKNVSTFLVQ 99 (113)
Q Consensus 56 lk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~---~~~i~~~L~~ 99 (113)
..+|.|.+.+.|-+. .|+.-+.....+.+.|-. ++.|.++|++
T Consensus 10 ~~EL~kRl~~~yPd~-~v~Vr~~s~~~l~v~g~~~~~k~~i~~iLqe 55 (65)
T PF06183_consen 10 ESELTKRLHRQYPDA-EVRVRPGSANGLSVSGGKKDDKERIEEILQE 55 (65)
T ss_dssp HHHHHHHHHHH-SS--EEEEEEESS-EEEEES--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCc-eEeeeecccCccccCCcCchHHHHHHHHHHH
Confidence 467888999999774 333334445578888754 6677777765
No 101
>PRK05177 minC septum formation inhibitor; Reviewed
Probab=22.17 E-value=2.9e+02 Score=21.29 Aligned_cols=59 Identities=24% Similarity=0.220 Sum_probs=35.6
Q ss_pred CCeeEEEEeCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcC-----ChhHHHHHHHHHcCC
Q 033711 40 GRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQG-----DQRKNVSTFLVQAGI 102 (113)
Q Consensus 40 g~K~VT~V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQG-----D~~~~i~~~L~~~G~ 102 (113)
|+...+++-.+ ..|+.++.+.|++++.-+.....+. .=.|.+.+ .....|.++|.++|+
T Consensus 15 g~~~~~~~L~~--~~~~~~l~~~L~~kl~~a~~FF~~a--pvvld~~~~~~~~~~~~~L~~~l~~~gl 78 (239)
T PRK05177 15 GRSFLAVVLSP--EAPLDDWLARLDALIARSPGFFLGR--PVVLDLAGLAIERSQLAALLAELEARGI 78 (239)
T ss_pred CCceEEEEEeC--CCCHHHHHHHHHHHHHhChhhhCCC--eEEEEeCCCCCCHHHHHHHHHHHHHCCC
Confidence 34444444333 5689999999999986665433211 11344444 346678888888775
No 102
>PF04468 PSP1: PSP1 C-terminal conserved region; InterPro: IPR007557 The yeast polymerase suppressor 1 (PSP1) protein partially suppresses mutations in DNA polymerases alpha and delta []. The C-terminal half of PSP1 contains a domain, which is also found in several hypothetical proteins from both eukaryotic and prokaryotic sources: Crithidia fasciculata RBP45 and RBP33, subunits of the cycling sequence binding protein (CSBP) II. RBP45 and RBP33 proteins bind specifically to the cycling sequences present in several mRNAs that accumulate periodically during the cell cycle. RBP45 and RBP33 are phosphoproteins, which are phosphorylated differentially during progression through the cell cycle. Hypothetical proteins with high sequence similarity have been identified in other kinetoplastid organisms []. Bacillus subtilis yaaT protein, which plays a significant role in phosphorelay during initiation of sporulation. It is possible that the yaaT protein is also related to DNA replication. The sequence of the yaaT protein is widely conserved in prokaryotes (bacteria and archaea), but the functions of the protein are unknown []. The actual biological significance of the PSP1 C-terminal domain has not yet been clearly established.
Probab=22.05 E-value=1.4e+02 Score=19.49 Aligned_cols=36 Identities=19% Similarity=0.321 Sum_probs=25.5
Q ss_pred EEEEecCCeeEEEEeCCCCcccHHHHHHHHhhhccc
Q 033711 34 RVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCC 69 (113)
Q Consensus 34 ~~e~R~g~K~VT~V~Gl~~~~dlk~lak~lKkk~~c 69 (113)
..+---.++++|+---=+.-+|+..|.+.|.+.|.|
T Consensus 46 d~e~~~D~~k~~fyy~a~~rvDFR~Lvr~L~~~f~~ 81 (88)
T PF04468_consen 46 DVEYQFDGSKLTFYYTAESRVDFRELVRDLAREFKT 81 (88)
T ss_pred EEEEEcCCCEEEEEEEeCCcCcHHHHHHHHHHHhCc
Confidence 333334556677664334678999999999999987
No 103
>PRK12866 YciI-like protein; Reviewed
Probab=22.04 E-value=1.6e+02 Score=19.46 Aligned_cols=33 Identities=24% Similarity=0.456 Sum_probs=24.6
Q ss_pred cccccEEEeCCCCCeEEEEcCChhHHHHHHHHHc
Q 033711 67 FCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQA 100 (113)
Q Consensus 67 ~~cggsv~~~~~~g~~I~lQGD~~~~i~~~L~~~ 100 (113)
+-++|... ++.+|..+.++.+-++.+.++|.+-
T Consensus 37 ll~aGp~~-~~~~G~~ii~~a~s~~e~~~~l~~D 69 (97)
T PRK12866 37 LLLAGALA-DPADGAVLVFEGDSPAAAEAFARAD 69 (97)
T ss_pred EEEeCCCC-CCCCcEEEEEEeCCHHHHHHHHHcC
Confidence 44555543 3445778999999999999999874
No 104
>TIGR03676 aRF1/eRF1 peptide chain release factor 1, archaeal and eukaryotic forms. Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA. This model identifies both archaeal (aRF1) and eukaryotic (eRF1) of the protein. Also known as translation termination factor 1.
Probab=21.88 E-value=1.5e+02 Score=24.77 Aligned_cols=39 Identities=21% Similarity=0.271 Sum_probs=23.6
Q ss_pred cHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHH
Q 033711 55 SYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQ 99 (113)
Q Consensus 55 dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i~~~L~~ 99 (113)
.++++.+.|++.=|-|.+... -+.--|++...+..+|.+
T Consensus 4 ~~k~~~~~l~~~~g~gt~lis------l~ipp~~~i~~v~~~l~~ 42 (403)
T TIGR03676 4 EFKKLLEELKKKKGRGTELIS------LYIPPDKQISDVVNQLRD 42 (403)
T ss_pred hHHHHHHHHHhCcCCCceEEE------EEeCCCCcHHHHHHHHHH
Confidence 456666666666666666553 455556666666666655
No 105
>PF15319 RHINO: RAD9, RAD1, HUS1-interacting nuclear orphan protein
Probab=21.81 E-value=71 Score=25.25 Aligned_cols=36 Identities=17% Similarity=0.333 Sum_probs=28.0
Q ss_pred eCCCCCeEEEEcCChhHHHHHHHHHcCCCCCCCeee
Q 033711 75 QDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKM 110 (113)
Q Consensus 75 ~~~~~g~~I~lQGD~~~~i~~~L~~~G~~~~~~I~i 110 (113)
+.|+...-|-|.=--|..|..||.++|--..+||.|
T Consensus 201 DTPE~~YGiKvTWRRR~hL~~yLrerGkL~~sq~lv 236 (236)
T PF15319_consen 201 DTPEEKYGIKVTWRRRRHLLAYLRERGKLSRSQFLV 236 (236)
T ss_pred cCCcccccceeeeeccHHHHHHHHHhCccchhhccC
Confidence 444444458888788999999999999878888764
No 106
>PHA00019 IV phage assembly protein
Probab=21.78 E-value=3.8e+02 Score=22.27 Aligned_cols=64 Identities=13% Similarity=0.249 Sum_probs=41.6
Q ss_pred EEEEeCCCCcccHHHHHHHHhhhccc----ccEEEeCCCCCeEEEEcCC--hhHHHHHHHHHcCCCCCCCeee
Q 033711 44 LTTVQGLKKEFSYNKILKDLKKEFCC----NGTVVQDPELGQVIQLQGD--QRKNVSTFLVQAGIVKKEHIKM 110 (113)
Q Consensus 44 VT~V~Gl~~~~dlk~lak~lKkk~~c----ggsv~~~~~~g~~I~lQGD--~~~~i~~~L~~~G~~~~~~I~i 110 (113)
+|.+--|. -.+.+++++.|+..+.- +|++.-++..+ .|.|+|. ..+++.++|...-. +..||.|
T Consensus 132 ~t~v~~l~-y~~a~~l~~~L~~~~~~~~~~~~~v~~d~~tN-~Liv~~t~~~~~~i~~lI~~lD~-~~~QV~I 201 (428)
T PHA00019 132 IVRTFNIN-NVRASDLLPLVKIFVKSNGAPGGSVTDLPGTN-SLVVSGSASQLPALADFISAIDV-PRRQVLI 201 (428)
T ss_pred eEEEEEEE-eCCHHHHHHHHHHhhcccCCCCeEEEEeCCCC-EEEEEeCHHHHHHHHHHHHhhCC-CCcEEEE
Confidence 44443333 34677777777765532 46777665444 7999987 56688889988876 4457665
No 107
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=21.72 E-value=3.5e+02 Score=20.64 Aligned_cols=45 Identities=9% Similarity=0.130 Sum_probs=32.3
Q ss_pred CeeEEEEeCCC-CcccHHHHHHHHhhhcccccEEE--eCCC--CCeEEEE
Q 033711 41 RKSLTTVQGLK-KEFSYNKILKDLKKEFCCNGTVV--QDPE--LGQVIQL 85 (113)
Q Consensus 41 ~K~VT~V~Gl~-~~~dlk~lak~lKkk~~cggsv~--~~~~--~g~~I~l 85 (113)
+..+|+++-.+ ..-..+.+.+.|.+.+++...+. .+|. +|=.|.+
T Consensus 176 ~~~~~v~sa~~l~~~~~~~i~~~l~~~~~~~v~~~~~vdp~ligGi~l~~ 225 (246)
T TIGR03321 176 GNPVLVRSAFELPEEQREQIRDTIRETLGPEIRLRFQTEPDLIGGIELTA 225 (246)
T ss_pred CCceEEEecCCCCHHHHHHHHHHHHHHHCCCeeEEeeeCchhcCceEEEE
Confidence 36689999888 67779999999999988765444 5555 4534443
No 108
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=21.45 E-value=1.3e+02 Score=18.60 Aligned_cols=24 Identities=13% Similarity=0.314 Sum_probs=20.1
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCC
Q 033711 81 QVIQLQGDQRKNVSTFLVQAGIVK 104 (113)
Q Consensus 81 ~~I~lQGD~~~~i~~~L~~~G~~~ 104 (113)
-.|.+..+..+.+.++|.+.|+..
T Consensus 43 ~al~~~~~d~~~i~~~l~~~~i~~ 66 (73)
T PF11823_consen 43 LALRFEPEDLEKIKEILEENGIEY 66 (73)
T ss_pred EEEEEChhhHHHHHHHHHHCCCCe
Confidence 367778899999999999999843
No 109
>cd07185 OmpA_C-like Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA. OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.
Probab=21.43 E-value=59 Score=20.62 Aligned_cols=21 Identities=29% Similarity=0.521 Sum_probs=15.8
Q ss_pred HHHHHHHHHcCCCCCCCeeecC
Q 033711 91 KNVSTFLVQAGIVKKEHIKMHG 112 (113)
Q Consensus 91 ~~i~~~L~~~G~~~~~~I~ihg 112 (113)
..|.++|.+.|++.+ .|.+.|
T Consensus 60 ~~v~~~L~~~g~~~~-~i~~~~ 80 (106)
T cd07185 60 EAVADYLVSKGVDAS-RITAVG 80 (106)
T ss_pred HHHHHHHHHcCCCHH-HEEEEE
Confidence 467889999998544 777754
No 110
>PF13014 KH_3: KH domain
Probab=21.33 E-value=1.5e+02 Score=16.23 Aligned_cols=28 Identities=14% Similarity=0.290 Sum_probs=15.9
Q ss_pred HHHHhhhcccccEEEe---CCCCCeEEEEcC
Q 033711 60 LKDLKKEFCCNGTVVQ---DPELGQVIQLQG 87 (113)
Q Consensus 60 ak~lKkk~~cggsv~~---~~~~g~~I~lQG 87 (113)
.+.|++..+|.-.+.. .......|.|.|
T Consensus 13 I~~I~~~tg~~I~i~~~~~~~~~~~~v~I~G 43 (43)
T PF13014_consen 13 IKEIREETGAKIQIPPENEPGSNERVVTITG 43 (43)
T ss_pred HHHHHHHhCcEEEECCccCCCCCceEEEEEC
Confidence 4667777555555544 112345788776
No 111
>PF05190 MutS_IV: MutS family domain IV C-terminus.; InterPro: IPR007861 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the clamp domain (domain 4) found in proteins of the MutS family. The clamp domain is inserted within the core domain at the top of the lever helices. It has a beta-sheet structure [].; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B 1WBD_A 1WB9_A 3K0S_A 1OH6_A ....
Probab=21.17 E-value=1.8e+02 Score=17.92 Aligned_cols=39 Identities=18% Similarity=0.388 Sum_probs=28.7
Q ss_pred cHHHHHHHHhhhccc-ccEEEeCCCCCeEEEEcCChhHHH
Q 033711 55 SYNKILKDLKKEFCC-NGTVVQDPELGQVIQLQGDQRKNV 93 (113)
Q Consensus 55 dlk~lak~lKkk~~c-ggsv~~~~~~g~~I~lQGD~~~~i 93 (113)
++.++++.+++.++| ...+...+..|..|+|--+...++
T Consensus 19 ~l~~~~~~~~~~~~~~~lk~~~~~~~gy~i~v~~~~~~~~ 58 (92)
T PF05190_consen 19 ELEELLEEIRKKLGIPSLKLVYIPKRGYLIEVPKSDEKKL 58 (92)
T ss_dssp HHHHHHHHHHHHCT-TTBEEEEETTTEEEEEEETCCGGGS
T ss_pred HHHHHHHHHHHHcCCCcEEEEEcCceEEEEEEEccccccC
Confidence 578899999999999 677766666677888877664433
No 112
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=20.74 E-value=2.1e+02 Score=17.39 Aligned_cols=22 Identities=14% Similarity=0.220 Sum_probs=11.7
Q ss_pred EEEEcCChhHHHHHHHHHcCCC
Q 033711 82 VIQLQGDQRKNVSTFLVQAGIV 103 (113)
Q Consensus 82 ~I~lQGD~~~~i~~~L~~~G~~ 103 (113)
.+...|...+.=...|..+|+.
T Consensus 41 ~Li~~Gk~L~D~~~~L~~~gi~ 62 (71)
T cd01796 41 QLIYNGRELVDNKRLLALYGVK 62 (71)
T ss_pred EEEECCeEccCCcccHHHcCCC
Confidence 4556666543322346666773
No 113
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=20.61 E-value=2.5e+02 Score=24.46 Aligned_cols=47 Identities=17% Similarity=0.333 Sum_probs=34.0
Q ss_pred HHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHHcCCCCCCCeee
Q 033711 60 LKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKM 110 (113)
Q Consensus 60 ak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i~~~L~~~G~~~~~~I~i 110 (113)
++.+..+++++-+|-. ..+|.+.||-|..|.+.|..+=-...+.|.+
T Consensus 122 L~~MA~~lGAs~~vLr----ek~v~~~~~~~R~v~EVLVRKvPd~Qqfiev 168 (591)
T KOG1143|consen 122 LRTMAQALGASMVVLR----EKDVTVKGSSRRTVVEVLVRKVPDSQQFIEV 168 (591)
T ss_pred HHHHHHHhCCceEEEE----eeeeeccCCCcchhhhhhhhhCCCcccceEE
Confidence 3666678888888765 4689999999999999998753322333544
No 114
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.54 E-value=1.2e+02 Score=17.72 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=16.9
Q ss_pred EEEEcC-ChhHHHHHHHHHcCCC
Q 033711 82 VIQLQG-DQRKNVSTFLVQAGIV 103 (113)
Q Consensus 82 ~I~lQG-D~~~~i~~~L~~~G~~ 103 (113)
.+.+.. ++.+++.+.|.+.||.
T Consensus 46 ~i~v~~~~~~~~~~~~L~~~G~~ 68 (69)
T cd04909 46 RISFKTQEDRERAKEILKEAGYE 68 (69)
T ss_pred EEEECCHHHHHHHHHHHHHcCCc
Confidence 455653 4788999999999983
No 115
>PRK10802 peptidoglycan-associated outer membrane lipoprotein; Provisional
Probab=20.45 E-value=55 Score=24.05 Aligned_cols=23 Identities=17% Similarity=0.470 Sum_probs=17.2
Q ss_pred hHHHHHHHHHcCCCCCCCeeecCC
Q 033711 90 RKNVSTFLVQAGIVKKEHIKMHGF 113 (113)
Q Consensus 90 ~~~i~~~L~~~G~~~~~~I~ihg~ 113 (113)
-+.|+++|...|+ ++++|.+-|+
T Consensus 126 A~aV~~~L~~~Gv-~~~ri~~~g~ 148 (173)
T PRK10802 126 ANAVKMYLQGKGV-SADQISIVSY 148 (173)
T ss_pred HHHHHHHHHHcCC-CHHHeEEEEe
Confidence 3578889999999 5667777553
No 116
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=20.40 E-value=1.3e+02 Score=17.76 Aligned_cols=45 Identities=11% Similarity=0.071 Sum_probs=30.8
Q ss_pred cHHHHHHHHhhhcccccEEE---eCC-CCCeEEEEcCChhHHHHHHHHHcCC
Q 033711 55 SYNKILKDLKKEFCCNGTVV---QDP-ELGQVIQLQGDQRKNVSTFLVQAGI 102 (113)
Q Consensus 55 dlk~lak~lKkk~~cggsv~---~~~-~~g~~I~lQGD~~~~i~~~L~~~G~ 102 (113)
.|.++++.|.+. +.++. -.+ .....+.++.|..+.+.+.|.+.||
T Consensus 14 ~La~v~~~l~~~---~inI~~i~~~~~~~~~~~rl~~~~~~~~~~~L~~~G~ 62 (66)
T cd04908 14 RLAAVTEILSEA---GINIRALSIADTSEFGILRLIVSDPDKAKEALKEAGF 62 (66)
T ss_pred hHHHHHHHHHHC---CCCEEEEEEEecCCCCEEEEEECCHHHHHHHHHHCCC
Confidence 477777777654 33332 111 1235788888998899999999998
No 117
>PRK01530 hypothetical protein; Reviewed
Probab=20.26 E-value=3e+02 Score=18.89 Aligned_cols=72 Identities=8% Similarity=0.178 Sum_probs=46.1
Q ss_pred cceEEEEEEEecCCeeEEEEe---C----------CC-CcccHHHHHHHHhhhcccc---cEEEeCCC-CCeEEEEcCCh
Q 033711 28 KEYVHIRVQQRNGRKSLTTVQ---G----------LK-KEFSYNKILKDLKKEFCCN---GTVVQDPE-LGQVIQLQGDQ 89 (113)
Q Consensus 28 ~~~I~I~~e~R~g~K~VT~V~---G----------l~-~~~dlk~lak~lKkk~~cg---gsv~~~~~-~g~~I~lQGD~ 89 (113)
.=.+.|+++.+.++=.|+-+. | -+ .+--=+++++.|.+.|++. -++..... ..+.|.|.|-.
T Consensus 13 gv~l~V~V~P~Akk~~i~g~~~~~~~~~Lki~v~ApPvdGkAN~ali~~LAk~l~v~ks~I~IvsG~tSR~K~i~I~g~~ 92 (105)
T PRK01530 13 QALLNLKVKPNAKQNLISNFVIINNIPYLKLSIKAIPEQGKANEEIINYLAKEWKLSRSNIEIIKGHTHSLKTILIKNIN 92 (105)
T ss_pred cEEEEEEEeeCCCcccccceeccCCCCEEEEEEecCCCCChHHHHHHHHHHHHhCCChhhEEEEecCCCCceEEEEeCCC
Confidence 346777777666544443221 1 11 3344678899999999877 33333222 34699999999
Q ss_pred hHHHHHHHHH
Q 033711 90 RKNVSTFLVQ 99 (113)
Q Consensus 90 ~~~i~~~L~~ 99 (113)
.+.+.+.|..
T Consensus 93 ~~~l~~~l~~ 102 (105)
T PRK01530 93 EDYLNLIINS 102 (105)
T ss_pred HHHHHHHHHh
Confidence 9999888865
Done!