Query 033711
Match_columns 113
No_of_seqs 131 out of 846
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 08:39:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033711.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033711hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ogh_A Eukaryotic translation 100.0 7.3E-40 2.5E-44 226.5 12.4 108 1-113 1-108 (108)
2 2if1_A EIF1, SUI1; translation 100.0 1E-39 3.4E-44 231.2 8.0 111 1-113 14-126 (126)
3 2xzm_F EIF1; ribosome, transla 100.0 5.3E-35 1.8E-39 200.1 11.4 87 27-113 15-101 (101)
4 1d1r_A Hypothetical 11.4 KD pr 99.9 1.5E-25 5.1E-30 156.6 5.8 78 24-108 26-106 (116)
5 1gxu_A Hydrogenase maturation 94.5 0.2 6.9E-06 32.4 7.3 54 46-101 12-65 (91)
6 1urr_A CG18505 protein; acylph 93.5 0.34 1.2E-05 31.8 7.0 55 47-101 17-73 (102)
7 2gv1_A Probable acylphosphatas 93.2 0.19 6.7E-06 32.4 5.3 61 47-108 10-72 (92)
8 1ulr_A Putative acylphosphatas 92.6 0.63 2.2E-05 29.7 7.1 55 46-101 7-63 (88)
9 2lxf_A Uncharacterized protein 92.5 0.37 1.3E-05 33.1 6.1 60 47-108 40-101 (121)
10 2vh7_A Acylphosphatase-1; hydr 92.4 0.54 1.8E-05 30.7 6.7 55 47-101 14-70 (99)
11 2bjd_A Acylphosphatase; hypert 92.3 0.41 1.4E-05 31.5 6.0 61 46-108 19-81 (101)
12 2fhm_A Probable acylphosphatas 92.2 0.72 2.5E-05 29.6 7.0 52 46-98 7-58 (91)
13 1k8b_A EIF-2-beta, probable tr 89.9 0.29 9.9E-06 29.0 3.1 44 38-88 4-52 (52)
14 2e9h_A EIF-5, eukaryotic trans 88.4 0.66 2.3E-05 33.3 4.6 64 28-95 25-93 (157)
15 3trg_A Acylphosphatase; fatty 87.9 2.4 8E-05 27.6 6.8 53 46-99 17-69 (98)
16 2d74_B Translation initiation 87.8 0.61 2.1E-05 33.1 4.1 58 28-95 32-94 (148)
17 1aps_A Acylphosphatase; hydrol 87.1 0.32 1.1E-05 31.7 2.1 52 47-99 13-64 (98)
18 1nee_A EIF-2-beta, probable tr 86.2 0.29 1E-05 34.4 1.6 60 29-98 31-96 (138)
19 1w2i_A Acylphosphatase; hydrol 86.1 3.2 0.00011 26.5 6.6 53 46-99 9-61 (91)
20 2g2k_A EIF-5, eukaryotic trans 74.5 1.2 4.3E-05 32.2 1.6 65 27-95 17-86 (170)
21 3cw2_K Translation initiation 65.4 0.27 9.4E-06 34.5 -3.5 50 38-93 37-91 (139)
22 2jvf_A De novo protein M7; tet 59.6 31 0.0011 21.9 7.3 74 30-112 7-87 (96)
23 4hhu_A OR280; engineered prote 59.0 42 0.0015 23.3 6.9 61 39-99 39-103 (170)
24 3vth_A Hydrogenase maturation 52.2 30 0.001 30.1 6.2 55 46-101 15-71 (761)
25 2y3m_A Emhofq, protein transpo 43.6 45 0.0015 22.7 5.1 65 42-109 104-174 (175)
26 4g9i_A Hydrogenase maturation 43.3 26 0.00089 30.4 4.5 44 46-89 7-50 (772)
27 3oon_A Outer membrane protein 40.2 16 0.00054 23.7 2.1 23 91-113 75-97 (123)
28 2hqs_H Peptidoglycan-associate 39.1 16 0.00056 23.7 2.1 23 90-113 63-85 (118)
29 1in0_A YAJQ protein, HI1034; a 37.0 58 0.002 23.3 4.8 56 41-102 93-152 (163)
30 1wwh_A Nucleoporin 35, nucleop 36.8 89 0.003 21.0 5.5 60 38-102 21-81 (119)
31 2aiz_P Outer membrane protein 34.9 20 0.0007 23.9 2.1 23 90-113 87-109 (134)
32 3a4r_A Nfatc2-interacting prot 34.8 60 0.0021 19.5 4.1 77 26-112 3-79 (79)
33 3cyp_B Chemotaxis protein MOTB 33.1 23 0.00078 23.6 2.1 22 91-113 67-88 (138)
34 2f9f_A First mannosyl transfer 32.8 1E+02 0.0035 20.1 5.4 60 40-113 22-85 (177)
35 2kgw_A Outer membrane protein 31.8 22 0.00074 23.3 1.8 23 90-113 81-103 (129)
36 2dsm_A Hypothetical protein YQ 31.7 34 0.0012 21.3 2.5 33 68-103 24-59 (72)
37 3ldt_A Outer membrane protein, 29.0 47 0.0016 22.9 3.2 22 91-113 112-133 (169)
38 3dzc_A UDP-N-acetylglucosamine 28.4 97 0.0033 23.7 5.2 57 38-104 22-79 (396)
39 4erh_A Outer membrane protein 27.6 22 0.00076 23.8 1.2 21 91-112 82-102 (148)
40 2nlv_A XISI protein-like; XISI 26.6 33 0.0011 23.0 1.9 29 81-110 67-96 (112)
41 2nwv_A XISI protein-like; YP_3 25.6 35 0.0012 23.0 1.9 29 81-110 69-98 (114)
42 3dhx_A Methionine import ATP-b 25.5 1.3E+02 0.0045 19.0 4.9 21 82-102 68-90 (106)
43 1r1m_A Outer membrane protein 25.3 37 0.0013 23.6 2.1 22 91-113 73-94 (164)
44 3hyi_A Protein DUF199/WHIA; la 25.3 2.3E+02 0.0079 21.7 7.3 49 55-104 107-159 (295)
45 1yj7_A ESCJ; mixed alpha/beta, 24.7 1.8E+02 0.0062 20.3 7.0 61 44-106 3-63 (171)
46 3s06_A Motility protein B; pep 24.6 31 0.0011 23.6 1.6 23 90-113 94-116 (166)
47 3d7q_A XISI protein-like; stru 24.4 33 0.0011 23.0 1.6 29 81-110 67-96 (112)
48 3e19_A FEOA; transcriptional r 24.3 1.1E+02 0.0039 17.8 4.1 27 82-110 18-44 (77)
49 2lx9_A Ferrous iron transport 23.4 1.3E+02 0.0043 18.3 4.2 29 82-110 11-39 (83)
50 2a2p_A Selenoprotein M, SELM p 23.4 68 0.0023 22.0 3.1 26 82-107 71-96 (129)
51 2diu_A KIAA0430 protein; struc 23.2 95 0.0032 20.1 3.6 52 46-99 13-65 (96)
52 1kkl_H Phosphocarrier protein 22.8 1.3E+02 0.0045 19.2 4.3 16 82-97 74-89 (100)
53 2k1s_A Inner membrane lipoprot 22.5 40 0.0014 22.7 1.8 22 91-113 92-113 (149)
54 1sse_B AP-1 like transcription 22.4 31 0.0011 22.2 1.1 26 47-72 41-68 (86)
55 3s0y_A Motility protein B; pep 21.9 46 0.0016 23.4 2.1 23 90-113 121-143 (193)
56 2h3j_A Hypothetical protein PA 21.5 1.1E+02 0.0039 17.5 3.6 29 82-110 12-40 (75)
57 4e9j_A General secretion pathw 21.0 1.7E+02 0.0058 21.1 5.1 60 42-103 112-173 (246)
58 2v8q_B 5'-AMP-activated protei 20.0 1.5E+02 0.0051 18.9 4.0 22 26-47 61-82 (87)
No 1
>2ogh_A Eukaryotic translation initiation factor EIF-1; alpha-beta protein; NMR {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.3e-40 Score=226.50 Aligned_cols=108 Identities=54% Similarity=0.954 Sum_probs=101.3
Q ss_pred CCcccccCCCCCCccccccccCCCCCCcceEEEEEEEecCCeeEEEEeCCCCcccHHHHHHHHhhhcccccEEEeCCCCC
Q 033711 1 MSDFDIQVPAAFDPFADAKAEDSGAGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELG 80 (113)
Q Consensus 1 ~~~~~~~~~~~fdp~~~~~~~~~~~~~~~~I~I~~e~R~g~K~VT~V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g 80 (113)
|| ++|++ +||||+++ .++++++.++|+|++++|+|||+||+|+||+.++|+++|||.||++|||||||+++|+++
T Consensus 1 m~-~~~~~--~~dpf~~~--~~~~~~~~~~V~Ir~~~R~g~K~VT~V~Gl~~~~dlk~lak~lKkk~acggsV~~~~~~g 75 (108)
T 2ogh_A 1 MS-IENLK--SFDPFADT--GDDETATSNYIHIRIQQRNGRKTLTTVQGVPEEYDLKRILKVLKKDFACNGNIVKDPEMG 75 (108)
T ss_dssp CC-SSCCS--CCCCCCCC--CCCCCCCSCSEEEEEECCSSSCCEEEEECCCTTSCHHHHHHHHHHHHCCCEEEECCTTSS
T ss_pred Cc-ccccC--CCCccccc--cccccCCCCeEEEEEEEccCCceEEEEeCCCcchhHHHHHHHHHHHhcCceEEecCCCCc
Confidence 88 89987 79999998 344689999999999999999999999999978899999999999999999999988888
Q ss_pred eEEEEcCChhHHHHHHHHHcCCCCCCCeeecCC
Q 033711 81 QVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 113 (113)
Q Consensus 81 ~~I~lQGD~~~~i~~~L~~~G~~~~~~I~ihg~ 113 (113)
.+|+||||||++|.++|.++|+.++++|.||||
T Consensus 76 ~~I~iQGD~r~~v~~~L~~~g~~~~~~I~vhg~ 108 (108)
T 2ogh_A 76 EIIQLQGDQRAKVCEFMISQLGLQKKNIKIHGF 108 (108)
T ss_dssp CEEEEESSCHHHHHHHHHHHHTSCCSCEEECCC
T ss_pred eEEEEcCCHHHHHHHHHHHcCCCCHHHEEEcCC
Confidence 899999999999999999999989999999997
No 2
>2if1_A EIF1, SUI1; translation initiation factor; NMR {Homo sapiens} SCOP: d.64.1.1
Probab=100.00 E-value=1e-39 Score=231.21 Aligned_cols=111 Identities=56% Similarity=0.986 Sum_probs=103.6
Q ss_pred CCcccccCCCCCCccccccccC--CCCCCcceEEEEEEEecCCeeEEEEeCCCCcccHHHHHHHHhhhcccccEEEeCCC
Q 033711 1 MSDFDIQVPAAFDPFADAKAED--SGAGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPE 78 (113)
Q Consensus 1 ~~~~~~~~~~~fdp~~~~~~~~--~~~~~~~~I~I~~e~R~g~K~VT~V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~ 78 (113)
|++++||. +||||+++.+++ ..+++.++|+|++++|+|||+||+|+||+.++|+++|||.||++|||||||+++|+
T Consensus 14 ~~~~~~~~--~fdpfa~~~~~~~~~~~g~~~~V~Ir~~~R~grK~VT~V~GL~~~~dlk~laK~LKkk~acgGtVk~~~e 91 (126)
T 2if1_A 14 MSAIQNLH--SFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPE 91 (126)
T ss_dssp GGGCSCCC--CCCTTSSCCCCSSCCSCSCTTCEECCCCCSSSSCCBCEEBSCCTTSCHHHHHTTHHHHTCCCEEEECCTT
T ss_pred hhhcccCC--CCCchhhhccccccccCCCCCeEEEEEEeecCCccEEEEeCCCCchhHHHHHHHHHHHhcCCeEEecCCC
Confidence 78899987 799999987765 35688999999999999999999999999778999999999999999999999888
Q ss_pred CCeEEEEcCChhHHHHHHHHHcCCCCCCCeeecCC
Q 033711 79 LGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 113 (113)
Q Consensus 79 ~g~~I~lQGD~~~~i~~~L~~~G~~~~~~I~ihg~ 113 (113)
++.+|+||||||++|.++|.++||++++||.||||
T Consensus 92 ~g~~I~IQGD~r~~I~~~L~~~G~~~~~~I~vhgf 126 (126)
T 2if1_A 92 YGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 126 (126)
T ss_dssp TSSEEEESBCCHHHHHHHHHHHTSSCTTTEECCCC
T ss_pred CccEEEEcCCHHHHHHHHHHHcCCCChhhEEeeCC
Confidence 88899999999999999999999999999999997
No 3
>2xzm_F EIF1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_F
Probab=100.00 E-value=5.3e-35 Score=200.14 Aligned_cols=87 Identities=45% Similarity=0.780 Sum_probs=84.0
Q ss_pred CcceEEEEEEEecCCeeEEEEeCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHHcCCCCCC
Q 033711 27 SKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKE 106 (113)
Q Consensus 27 ~~~~I~I~~e~R~g~K~VT~V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i~~~L~~~G~~~~~ 106 (113)
..++|+|++++|+|||.||+|+||++++|+++|||.||++|||||||+++|+++.+|+||||||++|.++|.++|+.+++
T Consensus 15 ~~~~v~I~~~~R~g~K~VT~V~Gl~~~~dlk~laK~lKkk~acggsV~~~~~~g~~I~iQGD~r~~v~~~L~~~G~~~~~ 94 (101)
T 2xzm_F 15 FQTHIHIRVEQRRGRKCFTTVEGIPPEFDYEKIMKYWKKWLSCNATIVEEDEGKKVIKLNGDHRNQIQQFLSEEGIAAVD 94 (101)
T ss_dssp CSCCEEEEEEEEETTEEEEEEECCCTTSCTHHHHHHHHHHHTSCCCEEECSTTCEEEEEESCCHHHHHHHHHHHSSSCTT
T ss_pred CCCeEEEEEEeccCCccEEEEecCCCchhHHHHHHHHHHHhcCCeEEecCCCCceEEEEeCcHHHHHHHHHHHcCCCCHH
Confidence 56799999999999999999999999999999999999999999999999888899999999999999999999999999
Q ss_pred CeeecCC
Q 033711 107 HIKMHGF 113 (113)
Q Consensus 107 ~I~ihg~ 113 (113)
+|.||||
T Consensus 95 ~I~vhg~ 101 (101)
T 2xzm_F 95 NITIHGI 101 (101)
T ss_dssp TEEECCC
T ss_pred HEEEcCC
Confidence 9999997
No 4
>1d1r_A Hypothetical 11.4 KD protein YCIH in PYRF-OSMB intergenic region; alpha-beta plait, open-faced beta sandwich, ferredoxin-like fold; NMR {Escherichia coli} SCOP: d.64.1.1
Probab=99.92 E-value=1.5e-25 Score=156.55 Aligned_cols=78 Identities=29% Similarity=0.509 Sum_probs=68.5
Q ss_pred CCCCcceEEEEEEEecCC--eeEEEEeCCC-CcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHHc
Q 033711 24 GAGSKEYVHIRVQQRNGR--KSLTTVQGLK-KEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQA 100 (113)
Q Consensus 24 ~~~~~~~I~I~~e~R~g~--K~VT~V~Gl~-~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i~~~L~~~ 100 (113)
+++..++|+|+++ |+|| |.||+|+||+ +++|+++|||.||++|||||||++ ++|+||||||++|.+||.++
T Consensus 26 ~p~~~~~V~I~~e-r~gR~GK~VT~V~Gl~~~~~dlk~laK~LKkk~acgGtVk~-----~~IeiQGD~r~~i~~~L~~~ 99 (116)
T 1d1r_A 26 RPKGDGVVRIQRQ-TSGRKGKGVCLITGVDLDDAELTKLAAELKKKCGCGGAVKD-----GVIEIQGDKRDLLKSLLEAK 99 (116)
T ss_dssp --CCCCEEEEEEC-CCSSSSCCCEEEECCCSCHHHHHHHHHHHTTSSSSCCBCCS-----SCEEECSCCHHHHHHHHHHH
T ss_pred CCCCCCeEEEEEE-eCCCCCCeEEEEeCCcCchhhHHHHHHHHHHHhcCCcEEcC-----CEEEEeCcHHHHHHHHHHHc
Confidence 5667899999998 6665 9999999999 899999999999999999999985 59999999999999999999
Q ss_pred CCCCCCCe
Q 033711 101 GIVKKEHI 108 (113)
Q Consensus 101 G~~~~~~I 108 (113)
|| +..+|
T Consensus 100 G~-~vk~i 106 (116)
T 1d1r_A 100 GM-KVKLA 106 (116)
T ss_dssp TC-EECCC
T ss_pred CC-Cccee
Confidence 98 44343
No 5
>1gxu_A Hydrogenase maturation protein HYPF; phosphatase, acylphosphatases, hydrogenase maturations, fibril formation, zinc-finger, complete proteome; 1.27A {Escherichia coli} SCOP: d.58.10.1 PDB: 1gxt_A
Probab=94.53 E-value=0.2 Score=32.40 Aligned_cols=54 Identities=17% Similarity=0.247 Sum_probs=44.1
Q ss_pred EEeCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHHcC
Q 033711 46 TVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAG 101 (113)
Q Consensus 46 ~V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i~~~L~~~G 101 (113)
+|+|.-.++-....+..+.++++-.|.|...+++ =+|++||+. +.+.++|...|
T Consensus 12 ~V~G~VQGVGFR~~v~~~A~~lgL~G~VrN~~dG-Vei~~eG~~-~~f~~~l~~~~ 65 (91)
T 1gxu_A 12 RIRGKVQGVGFRPFVWQLAQQLNLHGDVCNDGDG-VEVRLREDP-EVFLVQLYQHC 65 (91)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHTCCEEEEECSSS-EEEEESSCC-HHHHHHHHHTC
T ss_pred EEEEeeCCcCHHHHHHHHHHHcCCeEEEEECCCc-EEEEEEECH-HHHHHHHhhCC
Confidence 3666666777888888888899999999877666 789999999 88888887755
No 6
>1urr_A CG18505 protein; acylphosphatase, enzyme; 1.5A {Drosophila melanogaster} SCOP: d.58.10.1
Probab=93.48 E-value=0.34 Score=31.84 Aligned_cols=55 Identities=13% Similarity=0.078 Sum_probs=42.6
Q ss_pred EeCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCCh--hHHHHHHHHHcC
Q 033711 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQ--RKNVSTFLVQAG 101 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~--~~~i~~~L~~~G 101 (113)
|+|.-.++-....+..+.++++-.|.|...+++.=+|++||+. .+...++|...|
T Consensus 17 V~G~VQGVGFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~eG~~~~l~~f~~~l~~~g 73 (102)
T 1urr_A 17 IFGRVQGVFFRKHTSHEAKRLGVRGWCMNTRDGTVKGQLEAPMMNLMEMKHWLENNR 73 (102)
T ss_dssp EEEECSSSSHHHHHHHHHHHHTCEEEEEECTTSCEEEEEEECHHHHHHHHHHHHHCC
T ss_pred EEEeECCcChhHHHHHHHHHhCCcEEEEECCCCCEEEEEEcCHHHHHHHHHHHHhcC
Confidence 6676677778888888889999999998776655699999985 455666666555
No 7
>2gv1_A Probable acylphosphatase; globular alpha-helix/beta-sheet protein, hydrolase; NMR {Escherichia coli}
Probab=93.17 E-value=0.19 Score=32.42 Aligned_cols=61 Identities=11% Similarity=0.149 Sum_probs=39.1
Q ss_pred EeCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCCh--hHHHHHHHHHcCCCCCCCe
Q 033711 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQ--RKNVSTFLVQAGIVKKEHI 108 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~--~~~i~~~L~~~G~~~~~~I 108 (113)
|+|.-.++-+...+..+.++++-.|.|...+++.=+|++||+. .+...++|...| |+...|
T Consensus 10 V~G~VQGVGFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~eG~~~~i~~f~~~l~~~g-P~~a~V 72 (92)
T 2gv1_A 10 VYGRVQGVGFRYTTQYEAKRLGLTGYAKNLDDGSVEVVACGEEGQVEKLMQWLKSGG-PRSARV 72 (92)
T ss_dssp EEEECTTTTCCSHHHHHHHHHTCCCEEEECSSSCEEEEECSCHHHHHHHHHHHHHTS-STTSEE
T ss_pred EEEeeCCcCHHHHHHHHHHHcCCeEEEEECCCCcEEEEEEeCHHHHHHHHHHhhccC-CCceEE
Confidence 4444444444455566666678999998776655699999985 455666664556 554443
No 8
>1ulr_A Putative acylphosphatase; hydrolase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: d.58.10.1
Probab=92.57 E-value=0.63 Score=29.69 Aligned_cols=55 Identities=16% Similarity=0.173 Sum_probs=42.6
Q ss_pred EEeCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCCh--hHHHHHHHHHcC
Q 033711 46 TVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQ--RKNVSTFLVQAG 101 (113)
Q Consensus 46 ~V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~--~~~i~~~L~~~G 101 (113)
+|+|.-.++-+...+..+.++++-.|.|...+++.=+|++||+. .+...++|. .|
T Consensus 7 ~v~G~VQGVGFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~eG~~~~i~~f~~~l~-~g 63 (88)
T 1ulr_A 7 LVKGRVQGVGYRAFAQKKALELGLSGYAENLPDGRVEVVAEGPKEALELFLHHLK-QG 63 (88)
T ss_dssp EEEEECSSSSHHHHHHHHHHHTTCEEEEEECTTSCEEEEEESCHHHHHHHHHHHH-HC
T ss_pred EEEEeECCcCHHHHHHHHHHHcCCeEEEEECCCCcEEEEEEeCHHHHHHHHHHHH-hC
Confidence 46676677788888899999999999998776665799999985 456666666 45
No 9
>2lxf_A Uncharacterized protein; beaver fever, giardiasis, seattle structural genomics center infectious disease, ssgcid, structural genomics; NMR {Giardia lamblia}
Probab=92.46 E-value=0.37 Score=33.08 Aligned_cols=60 Identities=18% Similarity=0.204 Sum_probs=41.6
Q ss_pred EeCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCCh--hHHHHHHHHHcCCCCCCCe
Q 033711 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQ--RKNVSTFLVQAGIVKKEHI 108 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~--~~~i~~~L~~~G~~~~~~I 108 (113)
|+|.-.++-+...+..+.++++-.|.|...+++.=+|++||+- .+.+.++|. .| |+...|
T Consensus 40 V~G~VQGVGFR~~v~~~A~~lgL~G~VrN~~dG~Vei~~eG~~~~v~~f~~~l~-~g-Pp~A~V 101 (121)
T 2lxf_A 40 VTGKVQGVFFRKYTKKEADALSLVGYVTNNEDGSVSGVVQGPKEQVDAFVKYLH-KG-SPKSVV 101 (121)
T ss_dssp EEECTTCCCCHHHHHHHHHHHTCEEEEEECTTSCEEEEEEEEHHHHHHHHHHHH-HC-CTTCCE
T ss_pred EEEeeCCcCchHHHHHHHHHcCCEEEEEECCCCCEEEEEEECHHHHHHHHHHHH-hC-CCCCEE
Confidence 5566566667777888888889999998777666799999973 344555553 46 344443
No 10
>2vh7_A Acylphosphatase-1; hydrolase, acetylation; 1.45A {Homo sapiens} PDB: 2w4c_A 2w4p_A 2k7k_A 2k7j_A 2acy_A
Probab=92.44 E-value=0.54 Score=30.67 Aligned_cols=55 Identities=20% Similarity=0.157 Sum_probs=42.0
Q ss_pred EeCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCCh--hHHHHHHHHHcC
Q 033711 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQ--RKNVSTFLVQAG 101 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~--~~~i~~~L~~~G 101 (113)
|+|.-.++-....+..+.++++-.|.|...+++.=+|++||+. .+...++|.+.|
T Consensus 14 V~G~VQGVGFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~eG~~~~v~~f~~~l~~~~ 70 (99)
T 2vh7_A 14 IFGKVQGVFFRKHTQAEGKKLGLVGWVQNTDRGTVQGQLQGPISKVRHMQEWLETRG 70 (99)
T ss_dssp EEEECSSSCHHHHHHHHHHHTTCEEEEEECTTSCEEEEEEEEHHHHHHHHHHHHHTC
T ss_pred EEEeeCCcChHHHHHHHHHHcCCcEEEEECCCCCEEEEEEcCHHHHHHHHHHHHhcC
Confidence 6666667778888888889999999998776655699999985 445666665555
No 11
>2bjd_A Acylphosphatase; hyperthermophIle, hydrolase; 1.27A {Sulfolobus solfataricus} PDB: 2bje_A 1y9o_A
Probab=92.32 E-value=0.41 Score=31.55 Aligned_cols=61 Identities=16% Similarity=0.240 Sum_probs=44.1
Q ss_pred EEeCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHH--cCCCCCCCe
Q 033711 46 TVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQ--AGIVKKEHI 108 (113)
Q Consensus 46 ~V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i~~~L~~--~G~~~~~~I 108 (113)
+|+|.-.++-+...+..+.++++-.|.|...+++.=+|++||+.. .|.+|+.. .| |+...|
T Consensus 19 ~V~G~VQGVGFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~eG~~~-~i~~f~~~l~~g-P~~A~V 81 (101)
T 2bjd_A 19 RVYGLVQGVGFRKFVQIHAIRLGIKGYAKNLPDGSVEVVAEGYEE-ALSKLLERIKQG-PPAAEV 81 (101)
T ss_dssp EEEEECSSSSHHHHHHHHHHHTTCEEEEEECTTSCEEEEEEEEHH-HHHHHHHHHTTC-STTCEE
T ss_pred EEEEeECCcCHHHHHHHHHHHcCCeEEEEECCCCcEEEEEEeCHH-HHHHHHHHHHhC-CCccEE
Confidence 366766777888888999999999999987766557999999853 34444433 46 554443
No 12
>2fhm_A Probable acylphosphatase; hydrolase; NMR {Bacillus subtilis} PDB: 2hlt_A 2hlu_A 3br8_A
Probab=92.19 E-value=0.72 Score=29.55 Aligned_cols=52 Identities=13% Similarity=0.144 Sum_probs=39.6
Q ss_pred EEeCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHH
Q 033711 46 TVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLV 98 (113)
Q Consensus 46 ~V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i~~~L~ 98 (113)
+|+|.-.++-....+..+.++++-.|.|...+++.=+|++||+.. .|.+|+.
T Consensus 7 ~v~G~VQGVGFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~eG~~~-~i~~f~~ 58 (91)
T 2fhm_A 7 IVDGRVQGVGFRYFVQMEADKRKLAGWVKNRDDGRVEILAEGPEN-ALQSFVE 58 (91)
T ss_dssp EEEEECCSSCHHHHHHHHHHHTTCEEEEEECTTSCEEEEEEECHH-HHHHHHH
T ss_pred EEEEeECCcCHHHHHHHHHHHcCCeEEEEECCCCcEEEEEEeCHH-HHHHHHH
Confidence 366766777888888999999999999987766657999999853 3444443
No 13
>1k8b_A EIF-2-beta, probable translation initiation factor 2 beta subunit; N-terminal domain, AIF2 subunit beta; NMR {Methanocaldococcus jannaschii} SCOP: d.241.1.1
Probab=89.95 E-value=0.29 Score=28.96 Aligned_cols=44 Identities=25% Similarity=0.285 Sum_probs=35.0
Q ss_pred ecCCeeEEEEeCCC---C--cccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCC
Q 033711 38 RNGRKSLTTVQGLK---K--EFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGD 88 (113)
Q Consensus 38 R~g~K~VT~V~Gl~---~--~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD 88 (113)
|-|+| |++.++. . .=+++-++|.|.+.+|+.|++. ++...|+|.
T Consensus 4 ~eG~k--Tvi~Nf~~Ia~~L~R~p~hv~ky~~~ELGt~g~id-----~~rlii~G~ 52 (52)
T 1k8b_A 4 IEGNR--TIIRNFRELAKAVNRDEEFFAKYLLKETGSAGNLE-----GGRLILQRR 52 (52)
T ss_dssp EETTE--EEECCHHHHHHHHHTCHHHHHHHHHHHHSSEEEEE-----TTEEEEECC
T ss_pred EEcCe--EEEECHHHHHHHHCCCHHHHHHHHHHHhCCCeeec-----CCEEEEeCC
Confidence 45777 9999987 2 2368999999999999999996 347888873
No 14
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.41 E-value=0.66 Score=33.27 Aligned_cols=64 Identities=13% Similarity=0.048 Sum_probs=44.5
Q ss_pred cceEEEEEEEecCCeeEEEEeCCC---C--cccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHH
Q 033711 28 KEYVHIRVQQRNGRKSLTTVQGLK---K--EFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVST 95 (113)
Q Consensus 28 ~~~I~I~~e~R~g~K~VT~V~Gl~---~--~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i~~ 95 (113)
.+++.+.++ .+|+=.-|++.+|. . .=+++-++|.|...||+.|++.+. ++...|+|.+..+-.+
T Consensus 25 mP~~~v~~e-G~gnG~KTvi~Nf~dIak~L~R~p~hv~ky~~~ELGt~g~id~~---~~rlii~G~~~~~~i~ 93 (157)
T 2e9h_A 25 MPRLIAKVE-GKGNGIKTVIVNMVDVAKALNRPPTYPTKYFGCELGAQTQFDVK---NDRYIVNGSHEANKLQ 93 (157)
T ss_dssp EECCCEEEC-SSSSSCEEEETTHHHHHHHTTSCTHHHHHHHHHHHTCCEEEETT---TTEEEEEBCCCHHHHH
T ss_pred cCCCeEEEe-ccCCccEEEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceeecCC---CCEEEEEeeeCHHHHH
Confidence 344555555 33333568888886 2 235888999999999999999621 4689999998764443
No 15
>3trg_A Acylphosphatase; fatty acid and phospholipid metabolism, hydrolase; 1.60A {Coxiella burnetii}
Probab=87.93 E-value=2.4 Score=27.62 Aligned_cols=53 Identities=15% Similarity=0.144 Sum_probs=40.1
Q ss_pred EEeCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHH
Q 033711 46 TVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQ 99 (113)
Q Consensus 46 ~V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i~~~L~~ 99 (113)
+|+|.-.++-....+..+.++++-.|.|...+++.=+|++||+ .+.|.+|+..
T Consensus 17 ~V~G~VQGVGFR~~v~~~A~~lgL~G~VrN~~dG~Vei~~eG~-~~~l~~f~~~ 69 (98)
T 3trg_A 17 TVSGKVQGVFFRESVRKKAEELQLTGWVKNLSHGDVELVACGE-RDSIMILTEW 69 (98)
T ss_dssp EEEEECSSSCHHHHHHHHHHHTTCEEEEEECTTSCEEEEEEEE-HHHHHHHHHH
T ss_pred EEEEeECCCCccHHHHHHHHHcCCeEEEEECCCCEEEEEEEEC-HHHHHHHHHH
Confidence 3566666777888888888999999999877666579999998 3445555544
No 16
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=87.80 E-value=0.61 Score=33.10 Aligned_cols=58 Identities=24% Similarity=0.340 Sum_probs=42.4
Q ss_pred cceEEEEEEEecCCeeEEEEeCCC---C--cccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHH
Q 033711 28 KEYVHIRVQQRNGRKSLTTVQGLK---K--EFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVST 95 (113)
Q Consensus 28 ~~~I~I~~e~R~g~K~VT~V~Gl~---~--~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i~~ 95 (113)
.++..+.++ |+| |++.||. . .=+++-+.|.|...+|+.|++. ++...|+|.+..+-.+
T Consensus 32 mP~~~v~~e---GkK--Tvi~Nf~dIa~~L~R~p~hv~ky~~~ELGt~g~id-----~~rlii~G~~~~~~i~ 94 (148)
T 2d74_B 32 VPGALVTIE---GNK--TIIENFKDIADALNRDPQHLLKFLLREIATAGTLE-----GRRVVLQGRFTPYLIA 94 (148)
T ss_dssp CCCCCEEEE---TTE--EEESCHHHHHHHHTCCSHHHHHHHHHHSCCCEEEE-----TTEEEESSCCCHHHHH
T ss_pred cCCCeEEEe---cCe--EEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceeec-----CCEEEEEeeeCHHHHH
Confidence 344455444 654 9999987 1 2358889999999999999996 3589999997765444
No 17
>1aps_A Acylphosphatase; hydrolase(acting on acid anhydrides); NMR {Equus caballus} SCOP: d.58.10.1
Probab=87.11 E-value=0.32 Score=31.73 Aligned_cols=52 Identities=17% Similarity=0.155 Sum_probs=35.8
Q ss_pred EeCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHH
Q 033711 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQ 99 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i~~~L~~ 99 (113)
|+|.-.++-....+..+.++++-.|.|...+++.=+|++||+. +.|.+|+..
T Consensus 13 V~G~VQGVGFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~eG~~-~~l~~f~~~ 64 (98)
T 1aps_A 13 VFGRVQGVCFRMYAEDEARKIGVVGWVKNTSKGTVTGQVQGPE-EKVNSMKSW 64 (98)
T ss_dssp EECTTSCCCCTTHHHHHHHHHTCEEEEECCTTCEEEEEEEEEH-HHHHHHHHS
T ss_pred EEEEECCcCHHHHHHHHHHHcCCeEEEEECCCCcEEEEEEeCH-HHHHHHHHH
Confidence 5565555556666677777788999998665544699999985 345555544
No 18
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=86.21 E-value=0.29 Score=34.36 Aligned_cols=60 Identities=22% Similarity=0.257 Sum_probs=43.3
Q ss_pred ceEEEEEEEecCCeeEEEEeCCC---C--cccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHH-HHHHHH
Q 033711 29 EYVHIRVQQRNGRKSLTTVQGLK---K--EFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKN-VSTFLV 98 (113)
Q Consensus 29 ~~I~I~~e~R~g~K~VT~V~Gl~---~--~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~-i~~~L~ 98 (113)
++..+.++ |+| |++.||. . .=+++-+.|.|...+|+.|++. ++...|+|.+..+ |.++|.
T Consensus 31 p~~~v~~e---G~k--Tvi~Nf~dIa~~L~R~p~hv~ky~~~ELGt~g~id-----~~rlii~G~~~~~~i~~~L~ 96 (138)
T 1nee_A 31 PKAYSVIQ---GNR--TFIQNFREVADALNRDPQHLLKFLLRELGTAGNLE-----GGRAILQGKFTHFLINERIE 96 (138)
T ss_dssp SCCCCCEE---TTE--EEESCHHHHHHHHCSSHHHHHHHHHHHCCSCCCCB-----TTTEEEESSCSSSHHHHHHH
T ss_pred CCCeEEEE---CCc--EEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceeec-----CCEEEEEeeeCHHHHHHHHH
Confidence 34444443 766 9999987 2 2368999999999999999995 3579999997664 333443
No 19
>1w2i_A Acylphosphatase; hydrolase, thermophilic, stability, amyloid; 1.5A {Pyrococcus horikoshii} SCOP: d.58.10.1 PDB: 1v3z_A 2w4d_A
Probab=86.12 E-value=3.2 Score=26.51 Aligned_cols=53 Identities=17% Similarity=0.242 Sum_probs=39.7
Q ss_pred EEeCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHH
Q 033711 46 TVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQ 99 (113)
Q Consensus 46 ~V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i~~~L~~ 99 (113)
+|+|.-.++-+...+..+.++++-.|.|...+++.=+|++||+.. .|.+|+..
T Consensus 9 ~V~G~VQGVGFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~~G~~~-~v~~f~~~ 61 (91)
T 1w2i_A 9 KIYGRVQGVGFRWSMQREARKLGVNGWVRNLPDGSVEAVLEGDEE-RVEALIGW 61 (91)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHTCEEEEEECTTSCEEEEEEEEHH-HHHHHHHH
T ss_pred EEEEEECCcCHHHHHHHHHHHcCCeEEEEECCCCCEEEEEEeCHH-HHHHHHHH
Confidence 366766777788888888899999999987766657999999853 24444443
No 20
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=74.52 E-value=1.2 Score=32.22 Aligned_cols=65 Identities=12% Similarity=0.048 Sum_probs=43.2
Q ss_pred CcceEEEEEEEecCCeeEEEEeCCC---C--cccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHH
Q 033711 27 SKEYVHIRVQQRNGRKSLTTVQGLK---K--EFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVST 95 (113)
Q Consensus 27 ~~~~I~I~~e~R~g~K~VT~V~Gl~---~--~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i~~ 95 (113)
..+++.+.++= +|+=.-|++.+|. . .=+++-++|.|...||+.|++... ++...|+|.|.....+
T Consensus 17 kmP~~~v~~EG-~gnG~KTvi~Nf~dIak~L~R~p~hv~kyf~~ELGt~g~id~~---~~rliinG~~~~~~i~ 86 (170)
T 2g2k_A 17 KMPRLIAKVEG-KGNGIKTVIVNMVDVAKALNRPPTYPTKYFGCELGAQTQFDVK---NDRYIVNGSHEANKLQ 86 (170)
T ss_dssp CCCCCCCEEES-CTTTCEEECSSHHHHHHHHSSCCTTTHHHHHHHTTCCCEECTT---TCCEEEEBCCCHHHHH
T ss_pred cCCCCeEEEec-cCCccEEEEEcHHHHHHHhCCCHHHHHHHHHHHhCCceeecCC---CCEEEEEeeeCHHHHH
Confidence 34455666663 3333557787775 1 124666778899999999998521 3579999998765444
No 21
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=65.42 E-value=0.27 Score=34.54 Aligned_cols=50 Identities=22% Similarity=0.265 Sum_probs=38.9
Q ss_pred ecCCeeEEEEeCCC---Cc--ccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHH
Q 033711 38 RNGRKSLTTVQGLK---KE--FSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNV 93 (113)
Q Consensus 38 R~g~K~VT~V~Gl~---~~--~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i 93 (113)
+-|+| |++.|+. .. =+++-+.|.|...+|+.|++.. ++...|+|.+..+-
T Consensus 37 ~eG~k--Tvi~Nf~dIa~~L~R~p~hv~ky~~~ELGt~g~id~----~~rlii~G~~~~~~ 91 (139)
T 3cw2_K 37 NIGNT--TIIRNFAEYCDRIRREDKICMKYLLKELAAPGNVDD----KGELVIQGKFSSQV 91 (139)
T ss_dssp CCSSS--CCCSCSSSTTTTTSSCCTTTHHHHSCCSSCCCCCSS----SCCCTTTCSCCSCC
T ss_pred EECCe--EEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceEECC----CCeEEEEeeeCHHH
Confidence 45766 9999997 22 2588899999999999999953 35788999876543
No 22
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=59.56 E-value=31 Score=21.93 Aligned_cols=74 Identities=18% Similarity=0.376 Sum_probs=45.6
Q ss_pred eEEEEEEEecCCeeEEEEeCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHH-------HHHHHHcCC
Q 033711 30 YVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNV-------STFLVQAGI 102 (113)
Q Consensus 30 ~I~I~~e~R~g~K~VT~V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i-------~~~L~~~G~ 102 (113)
-|.|+++ |-| ..+.+=--...+-+++..+.+|.|.++-+|.-. -+|.+.....++. ..+|.+.||
T Consensus 7 ditikiq-rdg-qeieidirvstgkeleralqelekalaragarn------vqitisaendeqakelleliarllqklgy 78 (96)
T 2jvf_A 7 DITIKIQ-RDG-QEIEIDIRVSTGKELERALQELEKALARAGARN------VQITISAENDEQAKELLELIARLLQKLGY 78 (96)
T ss_dssp EEEEEEE-ETT-EEEEEEEECCSSSHHHHHHHHHHHHHHHHTCSE------EEEEEECSSHHHHHHHHHHHHHHHHHHTC
T ss_pred EEEEEEe-eCC-eEEEEEEEEcccHHHHHHHHHHHHHHHhccccc------eEEEEEecChHHHHHHHHHHHHHHHHhCC
Confidence 3555554 445 444433233445678888888888888777643 2677766655443 345566799
Q ss_pred CCCCCeeecC
Q 033711 103 VKKEHIKMHG 112 (113)
Q Consensus 103 ~~~~~I~ihg 112 (113)
+.-|+.+.|
T Consensus 79 -kdinvrvng 87 (96)
T 2jvf_A 79 -KDINVRVNG 87 (96)
T ss_dssp -SEEEEEEET
T ss_pred -CceEEEEcC
Confidence 666777766
No 23
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=59.00 E-value=42 Score=23.32 Aligned_cols=61 Identities=23% Similarity=0.278 Sum_probs=42.9
Q ss_pred cCCeeEEEEeCCCC--cccHHHHHHHHhhhcccccEEEeCCCC-C-eEEEEcCChhHHHHHHHHH
Q 033711 39 NGRKSLTTVQGLKK--EFSYNKILKDLKKEFCCNGTVVQDPEL-G-QVIQLQGDQRKNVSTFLVQ 99 (113)
Q Consensus 39 ~g~K~VT~V~Gl~~--~~dlk~lak~lKkk~~cggsv~~~~~~-g-~~I~lQGD~~~~i~~~L~~ 99 (113)
.|+.-+-+|+|.+. .-+|.+-|..|++.|.-..+..--..+ | -.|.+.||..+.+...|.+
T Consensus 39 ~gn~l~i~itgvpeqvrkelakeaerl~~efni~v~y~imgsgsgvm~i~f~gddlea~ekalke 103 (170)
T 4hhu_A 39 SGNRLVIVITGVPEQVRKELAKEAERLKAEFNINVQYQIMGSGSGVMVIVFEGDDLEALEKALKE 103 (170)
T ss_dssp ETTEEEEEEESCCHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEEEECSCHHHHHHHHHH
T ss_pred eCCEEEEEEeCCcHHHHHHHHHHHHHHHHhcceEEEEEEEeCCceEEEEEEecCcHHHHHHHHHH
Confidence 48889999999983 334555566788888776665543322 2 3789999998887776655
No 24
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=52.24 E-value=30 Score=30.11 Aligned_cols=55 Identities=9% Similarity=0.260 Sum_probs=42.8
Q ss_pred EEeCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCCh--hHHHHHHHHHcC
Q 033711 46 TVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQ--RKNVSTFLVQAG 101 (113)
Q Consensus 46 ~V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~--~~~i~~~L~~~G 101 (113)
+|+|.-.++-+...+..+.++++-.|.|...+++ =+|++||+. .+...++|...|
T Consensus 15 ~V~G~VQGVGFR~~v~~~A~~lgL~G~V~N~~dG-Vei~~eG~~~~l~~f~~~L~~~~ 71 (761)
T 3vth_A 15 NIFGIVQGVGFRPFVFNIAQKYNLKGIVYNNSSG-LYIEVEGEEKDIEAFIREIKENP 71 (761)
T ss_dssp EEEEECSSSSHHHHHHHHHHHTTCEEEEEEETTE-EEEEEEECHHHHHHHHHHHHHSC
T ss_pred EEEEEeCCcCcHHHHHHHHHHcCCeEEEEECCCe-EEEEEEECHHHHHHHHHHHhcCC
Confidence 4677777888899999999999999999876654 799999984 345555665554
No 25
>2y3m_A Emhofq, protein transport protein HOFQ; secretin, DNA uptake, competence; 2.30A {Aggregatibacter actinomycetemcomitans}
Probab=43.56 E-value=45 Score=22.71 Aligned_cols=65 Identities=15% Similarity=0.238 Sum_probs=43.4
Q ss_pred eeEEEEeCCCCcccHHHHHHHHh----hhcccccEEEeCCCCCeEEEEcCCh--hHHHHHHHHHcCCCCCCCee
Q 033711 42 KSLTTVQGLKKEFSYNKILKDLK----KEFCCNGTVVQDPELGQVIQLQGDQ--RKNVSTFLVQAGIVKKEHIK 109 (113)
Q Consensus 42 K~VT~V~Gl~~~~dlk~lak~lK----kk~~cggsv~~~~~~g~~I~lQGD~--~~~i~~~L~~~G~~~~~~I~ 109 (113)
..+|.+--|.| .+.+++++.|+ ..++-.|++.-++..+ .|.|.|.. .+++.++|...-.| ..||.
T Consensus 104 ~~~~~v~~L~y-~~a~~~~~~l~~~~~~l~~~~g~v~~d~~tN-~liv~~~~~~i~~i~~li~~lD~p-~~QV~ 174 (175)
T 2y3m_A 104 QLNTATIKLHF-AKASEVMKSLTGGSGSLLSPNGSITFDDRSN-LLLIQDEPRSVRNIKKLIKELDKP-IEQLE 174 (175)
T ss_dssp CCEEEEEECSS-SCHHHHHHHHHCSSSCSSCTTCEEEEETTTT-EEEEEECHHHHHHHHHHHHHHCC-------
T ss_pred CcEEEEEEEeC-CCHHHHHHHHhhCcccccCCCceEEEECCCC-EEEEEcCHHHHHHHHHHHHHhCCC-hhhCc
Confidence 34555544443 47899999998 7777788888776555 79999984 46888888887663 44543
No 26
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=43.27 E-value=26 Score=30.44 Aligned_cols=44 Identities=20% Similarity=0.338 Sum_probs=35.7
Q ss_pred EEeCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCCh
Q 033711 46 TVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQ 89 (113)
Q Consensus 46 ~V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~ 89 (113)
.|+|+-.++-..-+.-.|.++++=.|.|..+.+.|=+|++||+.
T Consensus 7 ~v~G~VQGVGFRPfv~~lA~~~~l~G~V~N~~~~gV~i~~~g~~ 50 (772)
T 4g9i_A 7 HVQGIVQAVGFRPFVYRIAHEHNLRGYVKNLGDAGVEIVVEGRE 50 (772)
T ss_dssp EECSSTTTSSCHHHHHHHHHHTTCCCBCCCCSTTCEEEECCSCS
T ss_pred EEEEEEeCCCccHHHHHHHHHcCCeEEEEECCCCeEEEEEEECH
Confidence 46788888888889999999999999997543456799999974
No 27
>3oon_A Outer membrane protein (TPN50); protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; 1.79A {Borrelia burgdorferi}
Probab=40.18 E-value=16 Score=23.68 Aligned_cols=23 Identities=17% Similarity=0.603 Sum_probs=18.6
Q ss_pred HHHHHHHHHcCCCCCCCeeecCC
Q 033711 91 KNVSTFLVQAGIVKKEHIKMHGF 113 (113)
Q Consensus 91 ~~i~~~L~~~G~~~~~~I~ihg~ 113 (113)
+.|+++|.+.|++.++.|.+-|+
T Consensus 75 ~aV~~~L~~~Gv~~~~ri~~~g~ 97 (123)
T 3oon_A 75 RAIGNYLIKMKVKDKDQILFKGW 97 (123)
T ss_dssp HHHHHHHHHTTSSCGGGEEEEEC
T ss_pred HHHHHHHHHcCCCchHeEEEEEE
Confidence 67899999999965778887653
No 28
>2hqs_H Peptidoglycan-associated lipoprotein; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: d.79.7.1 PDB: 2w8b_C 1oap_A
Probab=39.08 E-value=16 Score=23.70 Aligned_cols=23 Identities=17% Similarity=0.470 Sum_probs=17.7
Q ss_pred hHHHHHHHHHcCCCCCCCeeecCC
Q 033711 90 RKNVSTFLVQAGIVKKEHIKMHGF 113 (113)
Q Consensus 90 ~~~i~~~L~~~G~~~~~~I~ihg~ 113 (113)
-+.|+++|.+.|+ +++.|.+-|+
T Consensus 63 A~aV~~~L~~~Gi-~~~ri~~~g~ 85 (118)
T 2hqs_H 63 ANAVKMYLQGKGV-SADQISIVSY 85 (118)
T ss_dssp HHHHHHHHHHTTC-CGGGEEEEEC
T ss_pred HHHHHHHHHHcCC-CHHHEEEEEe
Confidence 4578999999999 5667887653
No 29
>1in0_A YAJQ protein, HI1034; alpha and beta sandwich, structural genomics, structure 2 function project, S2F, unknown function; 2.14A {Haemophilus influenzae} SCOP: d.58.49.1 d.58.49.1
Probab=37.01 E-value=58 Score=23.28 Aligned_cols=56 Identities=21% Similarity=0.371 Sum_probs=36.0
Q ss_pred CeeEEEEeCCCCcccHHHHHHHHhhh-cccccEEEeCCCCCeEEEEcCChhHHH---HHHHHHcCC
Q 033711 41 RKSLTTVQGLKKEFSYNKILKDLKKE-FCCNGTVVQDPELGQVIQLQGDQRKNV---STFLVQAGI 102 (113)
Q Consensus 41 ~K~VT~V~Gl~~~~dlk~lak~lKkk-~~cggsv~~~~~~g~~I~lQGD~~~~i---~~~L~~~G~ 102 (113)
|..+|+.+|++.+ ..|++.|.+|-. +=.-+++. |++|-|.|-.|+.| +++|.+..+
T Consensus 93 rq~~~lk~GI~~e-~AKkIvK~IKdsklKVqa~IQ-----Gd~vRVtgKkrDDLQ~viallk~~d~ 152 (163)
T 1in0_A 93 SKEIKLKQGIETE-MAKKITKLVKDSKIKVQTQIQ-----GEQVRVTGKSRDDLQAVIQLVKSAEL 152 (163)
T ss_dssp EEEEEECCSCCHH-HHHHHHHHHHHHTCSEEEEEE-----TTEEEEEESCHHHHHHHHHHHHHSCC
T ss_pred EEEEEeecccCHH-HHHHHHHHHHhcCCcceeEec-----CcEEEEecCCHHHHHHHHHHHHhcCC
Confidence 3578889999832 366666666643 33555554 56788888777755 667776544
No 30
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=36.81 E-value=89 Score=20.97 Aligned_cols=60 Identities=13% Similarity=0.165 Sum_probs=45.3
Q ss_pred ecCCeeEEEEeCCCCcccHHHHHHHHhhhcccccEEEeCC-CCCeEEEEcCChhHHHHHHHHHcCC
Q 033711 38 RNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDP-ELGQVIQLQGDQRKNVSTFLVQAGI 102 (113)
Q Consensus 38 R~g~K~VT~V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~-~~g~~I~lQGD~~~~i~~~L~~~G~ 102 (113)
+-...+||+- |++.. +...++++|++ ||--+.... .++.+|.|+=+.+......|.+-|-
T Consensus 21 ~~~~~wVtVF-GFp~~-~~~~VL~~F~~---~G~Iv~~~~~~~~NWihI~Y~s~~~A~rAL~kNG~ 81 (119)
T 1wwh_A 21 HLDDTWVTVF-GFPQA-SASYILLQFAQ---YGNILKHVMSNTGNWMHIRYQSKLQARKALSKDGR 81 (119)
T ss_dssp CGGGGEEEEE-CCCGG-GHHHHHHHHHT---TSCEEEEEECSSSSEEEEEESSHHHHHHHHTTTTC
T ss_pred CCCCCEEEEE-CCCHH-HHHHHHHHHHh---hCcEEEeccCCCCCeEEEEeCCHHHHHHHHHhCCe
Confidence 4445778765 99844 68888888886 666665443 3668999999999999999988775
No 31
>2aiz_P Outer membrane protein P6; alpha-beta sandwich; HET: UDP AMU DGL 6CL DAL; NMR {Haemophilus influenzae} SCOP: d.79.7.1
Probab=34.94 E-value=20 Score=23.89 Aligned_cols=23 Identities=13% Similarity=0.349 Sum_probs=17.7
Q ss_pred hHHHHHHHHHcCCCCCCCeeecCC
Q 033711 90 RKNVSTFLVQAGIVKKEHIKMHGF 113 (113)
Q Consensus 90 ~~~i~~~L~~~G~~~~~~I~ihg~ 113 (113)
-+.|+++|.+.|+ +++.|.+.|+
T Consensus 87 A~aV~~~L~~~Gi-~~~ri~~~g~ 109 (134)
T 2aiz_P 87 ADAVKGYLAGKGV-DAGKLGTVSY 109 (134)
T ss_dssp HHHHHHHHHHTTC-CGGGEEEEEC
T ss_pred HHHHHHHHHHcCC-CHHHEEEEEE
Confidence 3578899999999 5667887653
No 32
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=34.78 E-value=60 Score=19.51 Aligned_cols=77 Identities=13% Similarity=0.240 Sum_probs=45.7
Q ss_pred CCcceEEEEEEEecCCeeEEEEeCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHHcCCCCC
Q 033711 26 GSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKK 105 (113)
Q Consensus 26 ~~~~~I~I~~e~R~g~K~VT~V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i~~~L~~~G~~~~ 105 (113)
.+...|.|++....|++.+++= +....-++.|...+..+.++.-+- -.+.+.|+.... -+-..++++...
T Consensus 3 ~~~~~i~ikV~~~~g~~~i~~~--i~~~t~l~kl~~~y~~~~gi~~~~-------~rf~fdG~~l~~-~~Tp~~l~medg 72 (79)
T 3a4r_A 3 LGSQELRLRVQGKEKHQMLEIS--LSPDSPLKVLMSHYEEAMGLSGHK-------LSFFFDGTKLSG-KELPADLGLESG 72 (79)
T ss_dssp TCCCCEEEEEECSSTTCEEEEE--ECTTSCHHHHHHHHHHHHTCTTCC-------CEEEETTEECCS-CCCHHHHTCCTT
T ss_pred CCCCEEEEEEEeCCCCEEEEEE--ECCCChHHHHHHHHHHHhCCCccc-------EEEEECCEEcCC-CCCHHHcCCCCC
Confidence 3456789998766665444432 333445888889998887765331 246666654321 123445577666
Q ss_pred CCeeecC
Q 033711 106 EHIKMHG 112 (113)
Q Consensus 106 ~~I~ihg 112 (113)
+.|.+||
T Consensus 73 D~Idv~~ 79 (79)
T 3a4r_A 73 DLIEVWG 79 (79)
T ss_dssp CEEEEEC
T ss_pred CEEEEeC
Confidence 6677665
No 33
>3cyp_B Chemotaxis protein MOTB; bacterial flagellar motor, peptidoglycan binding, bacterial flagellum, flagellar rotation, inner membrane, membrane; 1.60A {Helicobacter pylori} PDB: 3cyq_B* 3imp_B
Probab=33.09 E-value=23 Score=23.63 Aligned_cols=22 Identities=18% Similarity=0.453 Sum_probs=17.1
Q ss_pred HHHHHHHHHcCCCCCCCeeecCC
Q 033711 91 KNVSTFLVQAGIVKKEHIKMHGF 113 (113)
Q Consensus 91 ~~i~~~L~~~G~~~~~~I~ihg~ 113 (113)
+.|+++|.+.|+ +++.|.+.|+
T Consensus 67 ~aV~~~L~~~Gv-~~~ri~~~g~ 88 (138)
T 3cyp_B 67 YRVMKVLIQYGV-NPNQLSFSSY 88 (138)
T ss_dssp HHHHHHHHHTTC-CGGGEEEEEC
T ss_pred HHHHHHHHHcCC-CHHHEEEEEE
Confidence 468899999999 5667887664
No 34
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=32.79 E-value=1e+02 Score=20.13 Aligned_cols=60 Identities=12% Similarity=0.039 Sum_probs=38.0
Q ss_pred CCeeEEEEeCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeEEEE--cCChhHHHHHHHH--HcCCCCCCCeeecCC
Q 033711 40 GRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQL--QGDQRKNVSTFLV--QAGIVKKEHIKMHGF 113 (113)
Q Consensus 40 g~K~VT~V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~l--QGD~~~~i~~~L~--~~G~~~~~~I~ihg~ 113 (113)
.++.+..+..+...-++..+++.+++. + +-.+.+ .|+..+.+.+++. +.|+ +++|.++|+
T Consensus 22 ~~~~i~~~G~~~~~Kg~~~li~a~~~l----------~--~~~l~i~G~~~~~~~l~~~~~~~~~~l--~~~v~~~g~ 85 (177)
T 2f9f_A 22 YGDFWLSVNRIYPEKRIELQLEVFKKL----------Q--DEKLYIVGWFSKGDHAERYARKIMKIA--PDNVKFLGS 85 (177)
T ss_dssp CCSCEEEECCSSGGGTHHHHHHHHHHC----------T--TSCEEEEBCCCTTSTHHHHHHHHHHHS--CTTEEEEES
T ss_pred CCCEEEEEeccccccCHHHHHHHHHhC----------C--CcEEEEEecCccHHHHHHHHHhhhccc--CCcEEEeCC
Confidence 446677777777545677788887764 1 112333 3455567888887 6677 567888774
No 35
>2kgw_A Outer membrane protein A; OMPA-L membrane, transmembrane; NMR {Mycobacterium tuberculosis} PDB: 2lca_A 2lbt_A
Probab=31.76 E-value=22 Score=23.32 Aligned_cols=23 Identities=35% Similarity=0.616 Sum_probs=17.4
Q ss_pred hHHHHHHHHHcCCCCCCCeeecCC
Q 033711 90 RKNVSTFLVQAGIVKKEHIKMHGF 113 (113)
Q Consensus 90 ~~~i~~~L~~~G~~~~~~I~ihg~ 113 (113)
-+.|+++|.+.|+ +.+.|.+.|+
T Consensus 81 A~aV~~~L~~~Gi-~~~ri~~~g~ 103 (129)
T 2kgw_A 81 AKIVADYLVARGV-AGDHIATVGL 103 (129)
T ss_dssp HHHHHHHHHHHTC-CGGGEEEEEC
T ss_pred HHHHHHHHHHcCC-CHHHEEEEEE
Confidence 3478899999999 5667887653
No 36
>2dsm_A Hypothetical protein YQAI; homodimer, domain swapped dimer, inter-domain beta sheet, structural genomics, PSI-2, protein structure initiative; NMR {Bacillus subtilis} SCOP: d.372.1.1
Probab=31.66 E-value=34 Score=21.30 Aligned_cols=33 Identities=18% Similarity=0.284 Sum_probs=25.0
Q ss_pred ccccEEEeCCCCCeEEEEcCC--hhHHHHHHHHH-cCCC
Q 033711 68 CCNGTVVQDPELGQVIQLQGD--QRKNVSTFLVQ-AGIV 103 (113)
Q Consensus 68 ~cggsv~~~~~~g~~I~lQGD--~~~~i~~~L~~-~G~~ 103 (113)
+||+-|... .+.++.-|| +++++.++|.+ .|+.
T Consensus 24 ~cG~EI~~g---d~yl~f~GeiIl~eNl~~Yl~e~~g~~ 59 (72)
T 2dsm_A 24 FYGDEVTPV---DDYVIDGGEIILRENLERYLREQLGFE 59 (72)
T ss_dssp TTSSCBCTT---SCEEEETTEEEEHHHHHHHHHHTCCCE
T ss_pred ccCCeeecC---CeEEEECCeeehHHHHHHHHHHHhCcE
Confidence 699988753 356777677 78899999988 5873
No 37
>3ldt_A Outer membrane protein, OMPA family protein; OMPA-like domain, PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.30A {Legionella pneumophila}
Probab=28.99 E-value=47 Score=22.92 Aligned_cols=22 Identities=32% Similarity=0.626 Sum_probs=17.8
Q ss_pred HHHHHHHHHcCCCCCCCeeecCC
Q 033711 91 KNVSTFLVQAGIVKKEHIKMHGF 113 (113)
Q Consensus 91 ~~i~~~L~~~G~~~~~~I~ihg~ 113 (113)
+.|+++|.+.|+ +++.|.+-|+
T Consensus 112 ~aV~~~L~~~Gv-~~~ri~~~g~ 133 (169)
T 3ldt_A 112 ETMMTFLWANGI-AAKRLKAEGY 133 (169)
T ss_dssp HHHHHHHHHTTC-CTTTEEECCT
T ss_pred HHHHHHHHHcCC-CHHHEEEEEE
Confidence 568999999998 5678888664
No 38
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=28.39 E-value=97 Score=23.68 Aligned_cols=57 Identities=19% Similarity=0.304 Sum_probs=40.3
Q ss_pred ecCCeeEEEEeCCC-CcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHHcCCCC
Q 033711 38 RNGRKSLTTVQGLK-KEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVK 104 (113)
Q Consensus 38 R~g~K~VT~V~Gl~-~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i~~~L~~~G~~~ 104 (113)
+.+.++|.+|.|=. ..+-+..+.++|++. .+ +. -.+.+.|-|++-..++|...|+.+
T Consensus 22 ~~~m~ki~~v~Gtr~~~~~~a~li~~l~~~---~~-~~------~~~~~tG~h~~~~~~~~~~~~i~~ 79 (396)
T 3dzc_A 22 SNAMKKVLIVFGTRPEAIKMAPLVQQLCQD---NR-FV------AKVCVTGQHREMLDQVLELFSITP 79 (396)
T ss_dssp --CCEEEEEEECSHHHHHHHHHHHHHHHHC---TT-EE------EEEEECCSSSHHHHHHHHHTTCCC
T ss_pred hCCCCeEEEEEeccHhHHHHHHHHHHHHhC---CC-Cc------EEEEEecccHHHHHHHHHhcCCCC
Confidence 34456899999987 566789999999875 11 22 257888999876777777788843
No 39
>4erh_A Outer membrane protein A; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.52A {Salmonella enterica subsp}
Probab=27.63 E-value=22 Score=23.75 Aligned_cols=21 Identities=29% Similarity=0.648 Sum_probs=17.3
Q ss_pred HHHHHHHHHcCCCCCCCeeecC
Q 033711 91 KNVSTFLVQAGIVKKEHIKMHG 112 (113)
Q Consensus 91 ~~i~~~L~~~G~~~~~~I~ihg 112 (113)
+.|+++|.+.|+ +.+.|.+.|
T Consensus 82 ~aV~~~L~~~Gv-~~~ri~~~g 102 (148)
T 4erh_A 82 QSVVDYLISKGI-PSDKISARG 102 (148)
T ss_dssp HHHHHHHHTTTC-CGGGEEEEE
T ss_pred HHHHHHHHHcCC-CHHHEEEEE
Confidence 789999999999 566787765
No 40
>2nlv_A XISI protein-like; XISI-like protein, structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.30A {Anabaena variabilis} SCOP: d.326.1.1
Probab=26.58 E-value=33 Score=23.04 Aligned_cols=29 Identities=31% Similarity=0.357 Sum_probs=22.4
Q ss_pred eEEEEcCChhH-HHHHHHHHcCCCCCCCeee
Q 033711 81 QVIQLQGDQRK-NVSTFLVQAGIVKKEHIKM 110 (113)
Q Consensus 81 ~~I~lQGD~~~-~i~~~L~~~G~~~~~~I~i 110 (113)
+-|=||=|..+ -|++-|.+.|+ |+++|++
T Consensus 67 ~KIWIq~d~TE~gIa~eLv~~GV-pk~dIVL 96 (112)
T 2nlv_A 67 GKIWLQQNLTDRNPAEELVMMGV-PREDIVL 96 (112)
T ss_dssp TEEEEEEECSSSCHHHHHHHTTC-CGGGEEE
T ss_pred CeEEEEeCCccccHHHHHHHcCC-CHHHEEE
Confidence 35777777666 78889999999 5667775
No 41
>2nwv_A XISI protein-like; YP_323822.1, structural genomics, PSI-2, structure initiative, joint center for structural genomics; 1.85A {Anabaena variabilis} SCOP: d.326.1.1
Probab=25.61 E-value=35 Score=22.99 Aligned_cols=29 Identities=21% Similarity=0.416 Sum_probs=22.2
Q ss_pred eEEEEcCChhH-HHHHHHHHcCCCCCCCeee
Q 033711 81 QVIQLQGDQRK-NVSTFLVQAGIVKKEHIKM 110 (113)
Q Consensus 81 ~~I~lQGD~~~-~i~~~L~~~G~~~~~~I~i 110 (113)
+-|=||=|..+ -|++-|.+.|+ |+++|++
T Consensus 69 ~KIWIq~d~TE~gIa~eLv~~GV-pk~dIVL 98 (114)
T 2nwv_A 69 EKIYIEEDYTEEGIATELMRLGV-TNNDIVL 98 (114)
T ss_dssp TEEEEEEECCSSCHHHHHHHTTC-CGGGEEE
T ss_pred CeEEEEeCCccccHHHHHHHcCC-CHHHEEE
Confidence 35777777666 78889999999 5667775
No 42
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=25.47 E-value=1.3e+02 Score=18.96 Aligned_cols=21 Identities=10% Similarity=0.366 Sum_probs=18.3
Q ss_pred EEEEcCC--hhHHHHHHHHHcCC
Q 033711 82 VIQLQGD--QRKNVSTFLVQAGI 102 (113)
Q Consensus 82 ~I~lQGD--~~~~i~~~L~~~G~ 102 (113)
.|++.|| ..+++.++|.+.|+
T Consensus 68 ~v~l~G~~~~~~~ai~~L~~~~v 90 (106)
T 3dhx_A 68 LTEMHGTQQDTQAAIAWLQEHHV 90 (106)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTC
T ss_pred EEEEeCCHHHHHHHHHHHHHCCC
Confidence 7899998 56789999999987
No 43
>1r1m_A Outer membrane protein class 4; 1.90A {Neisseria meningitidis} SCOP: d.79.7.1
Probab=25.32 E-value=37 Score=23.56 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=17.0
Q ss_pred HHHHHHHHHcCCCCCCCeeecCC
Q 033711 91 KNVSTFLVQAGIVKKEHIKMHGF 113 (113)
Q Consensus 91 ~~i~~~L~~~G~~~~~~I~ihg~ 113 (113)
+.|+++|.+.|+ +++.|.+-|+
T Consensus 73 ~aV~~~L~~~Gi-~~~ri~~~G~ 94 (164)
T 1r1m_A 73 YVVANNLVSNGV-PVSRISAVGL 94 (164)
T ss_dssp HHHHHHHHHTTC-CGGGEEEEEC
T ss_pred HHHHHHHHHcCC-CHHHEEEEEE
Confidence 468899999999 4667887664
No 44
>3hyi_A Protein DUF199/WHIA; laglidadg, homing endonuclease, helix-turn-helix, HTH, trans regulator; 2.34A {Thermotoga maritima} PDB: 3hyj_A
Probab=25.32 E-value=2.3e+02 Score=21.69 Aligned_cols=49 Identities=16% Similarity=0.115 Sum_probs=34.2
Q ss_pred cHHHHHHHHhhhcccccEEEeCCCCCe--EEEEcCC-hhHHHHHHH-HHcCCCC
Q 033711 55 SYNKILKDLKKEFCCNGTVVQDPELGQ--VIQLQGD-QRKNVSTFL-VQAGIVK 104 (113)
Q Consensus 55 dlk~lak~lKkk~~cggsv~~~~~~g~--~I~lQGD-~~~~i~~~L-~~~G~~~ 104 (113)
+.....-.|+-.|-++|||. +|+.+. ||...+. +-+.+.++| ...|++.
T Consensus 107 ~~~~~~A~lRGaFLa~GSv~-dP~~~YHLEi~~~~~e~a~~l~~ll~~~~~l~a 159 (295)
T 3hyi_A 107 DVALFVSFLRGLFLSGGSMT-NPRYHYHLEINLFEEETLALTRKSLKDFFNINA 159 (295)
T ss_dssp SHHHHHHHHHHHHHHHEEEC-CTTTCCCEEEEESCHHHHHHHHHHHHHHHCCCC
T ss_pred ChHHHHHHHHHHHhcCeecC-CCCCceeEEEeeCcHHHHHHHHHHHHHhcCCCc
Confidence 34555668999999999995 687554 4444443 566778888 7788843
No 45
>1yj7_A ESCJ; mixed alpha/beta, extended linker, protein transport; 1.80A {Escherichia coli}
Probab=24.72 E-value=1.8e+02 Score=20.30 Aligned_cols=61 Identities=18% Similarity=0.101 Sum_probs=40.2
Q ss_pred EEEEeCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHHcCCCCCC
Q 033711 44 LTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKE 106 (113)
Q Consensus 44 VT~V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i~~~L~~~G~~~~~ 106 (113)
.++.+||+. -|..++...|.+. +-....+-++.++..|.|--++..+++..|..+|+|+..
T Consensus 3 ~~Ly~~L~~-~da~~i~~~L~~~-gI~~~y~~~~~g~~~I~Vp~~~~~~ar~~La~~GLP~~~ 63 (171)
T 1yj7_A 3 EQLYTGLTE-KEANQMQALLLSN-DVNVSKEMDKSGNMTLSVAAADFVRAITILNNNGFPKKK 63 (171)
T ss_dssp EEEEEEECH-HHHHHHHHHHHHT-TCCCEEEECTTSCEEEEEEGGGHHHHHHHHHHTTCSCCC
T ss_pred ccccCCCCH-HHHHHHHHHHHHc-CCCCceEECCCCCEEEEeCHHHHHHHHHHHHHcCCCCCC
Confidence 566677762 2566666666654 111133332223337999999999999999999998754
No 46
>3s06_A Motility protein B; peptidoglycan binding, flagellar rotation, chemotaxis, bacte flagellar motor, membrane, motor protein; 1.80A {Helicobacter pylori} PDB: 3s03_A 3s0h_A 3s02_A
Probab=24.63 E-value=31 Score=23.62 Aligned_cols=23 Identities=17% Similarity=0.424 Sum_probs=17.6
Q ss_pred hHHHHHHHHHcCCCCCCCeeecCC
Q 033711 90 RKNVSTFLVQAGIVKKEHIKMHGF 113 (113)
Q Consensus 90 ~~~i~~~L~~~G~~~~~~I~ihg~ 113 (113)
-+.|+++|.+.|+ +++.|.+.|+
T Consensus 94 A~aV~~~L~~~Gv-~~~ri~~~g~ 116 (166)
T 3s06_A 94 AYRVMKVLIQYGV-NPNQLSFSSY 116 (166)
T ss_dssp HHHHHHHHHHTTC-CGGGEEEEEE
T ss_pred HHHHHHHHHHcCC-ChHhEEEEEE
Confidence 3578899999999 5667877653
No 47
>3d7q_A XISI protein-like; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.30A {Nostoc punctiforme pcc 73102}
Probab=24.45 E-value=33 Score=23.04 Aligned_cols=29 Identities=24% Similarity=0.426 Sum_probs=22.3
Q ss_pred eEEEEcCChhH-HHHHHHHHcCCCCCCCeee
Q 033711 81 QVIQLQGDQRK-NVSTFLVQAGIVKKEHIKM 110 (113)
Q Consensus 81 ~~I~lQGD~~~-~i~~~L~~~G~~~~~~I~i 110 (113)
+-|=||=|..+ -|++-|.+.|+ |+++|++
T Consensus 67 ~KIWIq~d~TE~gIa~eLv~~GV-pk~dIVL 96 (112)
T 3d7q_A 67 NKIWIQQNTTEADIALELMEMGI-DKQDIVI 96 (112)
T ss_dssp TEEEEEEECSSCCHHHHHHTTTC-CGGGEEE
T ss_pred CeEEEEeCCccccHHHHHHHcCC-CHHHEEE
Confidence 35777777666 78889999999 5667775
No 48
>3e19_A FEOA; transcriptional regulator, metal-binding, iron uptake, beta- transcription regulator, metal binding protein; HET: GOL; 2.00A {Thermococcus thioreducens}
Probab=24.31 E-value=1.1e+02 Score=17.83 Aligned_cols=27 Identities=26% Similarity=0.464 Sum_probs=20.5
Q ss_pred EEEEcCChhHHHHHHHHHcCCCCCCCeee
Q 033711 82 VIQLQGDQRKNVSTFLVQAGIVKKEHIKM 110 (113)
Q Consensus 82 ~I~lQGD~~~~i~~~L~~~G~~~~~~I~i 110 (113)
...+.++ ..+..+|.+.|+.+...|++
T Consensus 18 I~~i~~~--~~~~~rL~~lGi~~G~~v~v 44 (77)
T 3e19_A 18 VVNILGG--HNARQKLVSMGLTPGATIQV 44 (77)
T ss_dssp EEEECSH--HHHHHHHHTTTCSTTCEEEE
T ss_pred EEEEECC--HHHHHHHHHCCCCCCCEEEE
Confidence 4566665 67888888899888877776
No 49
>2lx9_A Ferrous iron transport protein A; FEOA; NMR {Escherichia coli}
Probab=23.43 E-value=1.3e+02 Score=18.31 Aligned_cols=29 Identities=7% Similarity=0.177 Sum_probs=19.4
Q ss_pred EEEEcCChhHHHHHHHHHcCCCCCCCeee
Q 033711 82 VIQLQGDQRKNVSTFLVQAGIVKKEHIKM 110 (113)
Q Consensus 82 ~I~lQGD~~~~i~~~L~~~G~~~~~~I~i 110 (113)
...|.|+....+...|.+.||.+...|+|
T Consensus 11 I~~i~~~~~~~~~rrL~~mGl~pG~~V~V 39 (83)
T 2lx9_A 11 ITGFSREISPAYRQKLLSLGMLPGSSFNV 39 (83)
T ss_dssp EEECCSSSCHHHHHHHHHSSCCSSSEEEE
T ss_pred EEEEECCCCHHHHHHHHHCCCCCCCEEEE
Confidence 34555554566777788888877776665
No 50
>2a2p_A Selenoprotein M, SELM protein; redox enzyme, oxidoreductase; NMR {Mus musculus} SCOP: c.47.1.23
Probab=23.39 E-value=68 Score=22.01 Aligned_cols=26 Identities=19% Similarity=0.351 Sum_probs=19.9
Q ss_pred EEEEcCChhHHHHHHHHHcCCCCCCC
Q 033711 82 VIQLQGDQRKNVSTFLVQAGIVKKEH 107 (113)
Q Consensus 82 ~I~lQGD~~~~i~~~L~~~G~~~~~~ 107 (113)
.|-|-+=-++.|.+||.+.||.++++
T Consensus 71 ~I~Iekw~~d~I~efL~e~GF~rk~~ 96 (129)
T 2a2p_A 71 RIPLSQMTRDEINALVQELGFYRKSA 96 (129)
T ss_dssp EEECSSSCHHHHHHHHHHHTCCBCSS
T ss_pred EeecccCCHHHHHHHHHHcCCccccc
Confidence 44554446899999999999987654
No 51
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.19 E-value=95 Score=20.07 Aligned_cols=52 Identities=12% Similarity=0.176 Sum_probs=32.4
Q ss_pred EEeCCCCcccHHHHHHHHhhhcc-cccEEEeCCCCCeEEEEcCChhHHHHHHHHH
Q 033711 46 TVQGLKKEFSYNKILKDLKKEFC-CNGTVVQDPELGQVIQLQGDQRKNVSTFLVQ 99 (113)
Q Consensus 46 ~V~Gl~~~~dlk~lak~lKkk~~-cggsv~~~~~~g~~I~lQGD~~~~i~~~L~~ 99 (113)
.|.+|++.++.+.|-+.|...|+ |||.|.+-..+-..|++. | .+.....+.+
T Consensus 13 YV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~VtgG~AfV~F~-~-~esA~~A~~~ 65 (96)
T 2diu_A 13 YVYNLPANKDGKSVSNRLRRLSDNCGGKVLSITGCSAILRFI-N-QDSAERAQKR 65 (96)
T ss_dssp EEESCCTTSCHHHHHHHHHHHHHTTTCCEEECCTTCEEEEES-S-HHHHHHHHHH
T ss_pred EEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEecCEEEEEEC-C-HHHHHHHHHH
Confidence 49999988888887777776665 556887654333455554 3 3333344443
No 52
>1kkl_H Phosphocarrier protein HPR; phosphorylation, protein kinase, bacteria, protein/protein interaction, transferase; 2.80A {Bacillus subtilis} SCOP: d.94.1.1 PDB: 1kkm_H*
Probab=22.81 E-value=1.3e+02 Score=19.22 Aligned_cols=16 Identities=19% Similarity=0.293 Sum_probs=9.6
Q ss_pred EEEEcCChhHHHHHHH
Q 033711 82 VIQLQGDQRKNVSTFL 97 (113)
Q Consensus 82 ~I~lQGD~~~~i~~~L 97 (113)
+|...|+.-+...+.|
T Consensus 74 ~i~a~G~Dee~Al~~l 89 (100)
T 1kkl_H 74 TISASGADENDALNAL 89 (100)
T ss_dssp EEEEESTTHHHHHHHH
T ss_pred EEEEeCCCHHHHHHHH
Confidence 4668887755444433
No 53
>2k1s_A Inner membrane lipoprotein YIAD; abbababab, OMPA, alpha beta, ME palmitate, transmembrane, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=22.47 E-value=40 Score=22.66 Aligned_cols=22 Identities=23% Similarity=0.584 Sum_probs=16.8
Q ss_pred HHHHHHHHHcCCCCCCCeeecCC
Q 033711 91 KNVSTFLVQAGIVKKEHIKMHGF 113 (113)
Q Consensus 91 ~~i~~~L~~~G~~~~~~I~ihg~ 113 (113)
+.|+++|.+.|+ +++.|.+-|+
T Consensus 92 ~aV~~~L~~~Gv-~~~ri~~~g~ 113 (149)
T 2k1s_A 92 DSVASALITQGV-DASRIRTQGL 113 (149)
T ss_dssp HHHHHHHHHHTC-CGGGEEEEEC
T ss_pred HHHHHHHHHcCC-CHHHEEEEEE
Confidence 468889999999 5667877653
No 54
>1sse_B AP-1 like transcription factor YAP1; disulfide bond, nuclear export signal, NES, redox- regulation, transcription activator; NMR {Saccharomyces cerevisiae} SCOP: g.78.1.1
Probab=22.44 E-value=31 Score=22.24 Aligned_cols=26 Identities=8% Similarity=0.227 Sum_probs=21.0
Q ss_pred EeCCC--CcccHHHHHHHHhhhcccccE
Q 033711 47 VQGLK--KEFSYNKILKDLKKEFCCNGT 72 (113)
Q Consensus 47 V~Gl~--~~~dlk~lak~lKkk~~cggs 72 (113)
|+.-+ ..+|+..|+.+|+.+--|+|+
T Consensus 41 I~shP~~~~vDId~LC~eLk~kAKCsg~ 68 (86)
T 1sse_B 41 ITTHPKYSDIDVDGLCSELMAKAKCSER 68 (86)
T ss_dssp HHTCSCCSSCCHHHHHHHHTTTCCEETT
T ss_pred HhcCcchhhcCHHHHHHHHHHhCccCCC
Confidence 44445 478999999999999989874
No 55
>3s0y_A Motility protein B; peptidoglycan binding, flagellar rotation, chemotaxis, bacte flagellar motor, membrane, motor protein; 1.80A {Helicobacter pylori} PDB: 3s0w_A
Probab=21.87 E-value=46 Score=23.37 Aligned_cols=23 Identities=17% Similarity=0.424 Sum_probs=17.6
Q ss_pred hHHHHHHHHHcCCCCCCCeeecCC
Q 033711 90 RKNVSTFLVQAGIVKKEHIKMHGF 113 (113)
Q Consensus 90 ~~~i~~~L~~~G~~~~~~I~ihg~ 113 (113)
-..|+++|.+.|+ +++.|.+.|+
T Consensus 121 A~aV~~~L~~~Gv-~~~ri~~~g~ 143 (193)
T 3s0y_A 121 AYRVMKVLIQYGV-NPNQLSFSSY 143 (193)
T ss_dssp HHHHHHHHHHTTC-CGGGEEEEEC
T ss_pred HHHHHHHHHHcCC-CHHHEEEEEE
Confidence 3468899999999 5667887664
No 56
>2h3j_A Hypothetical protein PA4359; NESG, GFT structural genomics, PAT89, PSI-2, protein structure initiative; NMR {Pseudomonas aeruginosa} SCOP: b.34.1.2
Probab=21.51 E-value=1.1e+02 Score=17.54 Aligned_cols=29 Identities=7% Similarity=0.161 Sum_probs=18.2
Q ss_pred EEEEcCChhHHHHHHHHHcCCCCCCCeee
Q 033711 82 VIQLQGDQRKNVSTFLVQAGIVKKEHIKM 110 (113)
Q Consensus 82 ~I~lQGD~~~~i~~~L~~~G~~~~~~I~i 110 (113)
...+.++....+..+|.+.|+.+...|++
T Consensus 12 I~~i~~~~~~~~~~rL~~lGl~~G~~v~v 40 (75)
T 2h3j_A 12 ITGYSPAISNGYRQRLFSMGLLPGAALRV 40 (75)
T ss_dssp EEEECTTCCTTHHHHHHHHTCCTTCEEEE
T ss_pred EEEEeCCCCHHHHHHHHHcCCCCCCEEEE
Confidence 34555533345677777888877776665
No 57
>4e9j_A General secretion pathway protein D; homodimer, XCPQ, periplasmic domain, structural protein, PER space, outer membrane; 2.03A {Pseudomonas aeruginosa} PDB: 4ec5_A
Probab=21.04 E-value=1.7e+02 Score=21.07 Aligned_cols=60 Identities=8% Similarity=0.094 Sum_probs=43.0
Q ss_pred eeEEEEeCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCC--hhHHHHHHHHHcCCC
Q 033711 42 KSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGD--QRKNVSTFLVQAGIV 103 (113)
Q Consensus 42 K~VT~V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD--~~~~i~~~L~~~G~~ 103 (113)
..+|.+--|.+ .+.+++++.|+.-+.-.|++.-++..+ .+.|.|. ..+++.+++...-.|
T Consensus 112 ~~~t~vi~L~~-~~a~~l~~~L~~lls~~g~v~~d~~tN-~Liv~g~~~~i~~i~~li~~lD~p 173 (246)
T 4e9j_A 112 RLETRVIQVQQ-SPVSELIPLIRPLVPQYGHLAAVPSAN-ALIISDRSANIARIEDVIRQLDQK 173 (246)
T ss_dssp CCEEEEEECSS-SCHHHHHHHHGGGSCTTSEEEEEGGGT-EEEEEECHHHHHHHHHHHHHHHTC
T ss_pred ccEEEEEEecC-CCHHHHHHHHHHhcCCCceEEEcCCCC-EEEEEcCHHHHHHHHHHHHHhccc
Confidence 45566644544 578999999998887778887665444 7889986 667888888775443
No 58
>2v8q_B 5'-AMP-activated protein kinase subunit beta-2; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Homo sapiens} SCOP: d.353.1.1 PDB: 2v92_B* 2v9j_B* 2y8l_B* 2y8q_B* 2y94_B* 2ya3_B*
Probab=20.00 E-value=1.5e+02 Score=18.92 Aligned_cols=22 Identities=18% Similarity=0.206 Sum_probs=17.6
Q ss_pred CCcceEEEEEEEecCCeeEEEE
Q 033711 26 GSKEYVHIRVQQRNGRKSLTTV 47 (113)
Q Consensus 26 ~~~~~I~I~~e~R~g~K~VT~V 47 (113)
.....+.+..-.|=.+|.||+|
T Consensus 61 ik~~v~alg~T~Ry~~KyVT~v 82 (87)
T 2v8q_B 61 IKDSVMVLSATHRYKKKYVTTL 82 (87)
T ss_dssp CBTTEEEEEEEEEETTEEEEEE
T ss_pred ccCCeEEEeeeeeecceeEEEE
Confidence 3456677888888899999998
Done!