RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 033711
         (113 letters)



>d2if1a_ d.64.1.1 (A:) Eukaryotic translation initiation factor
           eIF-1 (SUI1) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 126

 Score =  130 bits (327), Expect = 6e-41
 Identities = 62/111 (55%), Positives = 84/111 (75%), Gaps = 2/111 (1%)

Query: 5   DIQVPAAFDPFADAKAED--SGAGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKD 62
            IQ   +FDPFADA   D    AG+++Y+HIR+QQRNGRK+LTTVQG+  ++   K++K 
Sbjct: 16  AIQNLHSFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKA 75

Query: 63  LKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 113
            KK+F CNGTV++ PE G+VIQLQGDQRKN+  FLV+ G+ K + +K+HGF
Sbjct: 76  FKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 126


>d1d1ra_ d.64.1.1 (A:) YciH {Escherichia coli [TaxId: 562]}
          Length = 83

 Score = 62.3 bits (152), Expect = 6e-15
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 9/77 (11%)

Query: 33  IRVQ-QRNGR--KSLTTVQGLK-KEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGD 88
           +R+Q Q +GR  K +  + G+   +    K+  +LKK+  C G V        VI++QGD
Sbjct: 6   VRIQRQTSGRKGKGVCLITGVDLDDAELTKLAAELKKKCGCGGAVKDG-----VIEIQGD 60

Query: 89  QRKNVSTFLVQAGIVKK 105
           +R  + + L   G+  K
Sbjct: 61  KRDLLKSLLEAKGMKVK 77


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.135    0.384 

Gapped
Lambda     K      H
   0.267   0.0572    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 412,631
Number of extensions: 16978
Number of successful extensions: 43
Number of sequences better than 10.0: 1
Number of HSP's gapped: 40
Number of HSP's successfully gapped: 8
Length of query: 113
Length of database: 2,407,596
Length adjustment: 71
Effective length of query: 42
Effective length of database: 1,432,766
Effective search space: 60176172
Effective search space used: 60176172
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.2 bits)