BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033712
         (113 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1OSD|A Chain A, Crystal Structure Of Oxidized Merp From Ralstonia
          Metallidurans Ch34
 pdb|1OSD|B Chain B, Crystal Structure Of Oxidized Merp From Ralstonia
          Metallidurans Ch34
          Length = 72

 Score = 26.9 bits (58), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 25/57 (43%)

Query: 1  MTCKKCRKKAMKIAVKADGVIKVEIKGEGKDELVVIGNEVDSVKLTRKLQKKLGFAS 57
          MTC  C     K   K +GV KV++  E +  +V   +   SV+   K     G+ S
Sbjct: 12 MTCSACPITVKKAISKVEGVSKVDVTFETRQAVVTFDDAKTSVQKLTKATADAGYPS 68


>pdb|3LND|A Chain A, Crystal Structure Of Cadherin-6 Ec12 W4a
 pdb|3LND|B Chain B, Crystal Structure Of Cadherin-6 Ec12 W4a
 pdb|3LND|C Chain C, Crystal Structure Of Cadherin-6 Ec12 W4a
 pdb|3LND|D Chain D, Crystal Structure Of Cadherin-6 Ec12 W4a
          Length = 207

 Score = 26.6 bits (57), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 9/37 (24%), Positives = 21/37 (56%)

Query: 16 KADGVIKVEIKGEGKDELVVIGNEVDSVKLTRKLQKK 52
          + DG +K  + G+G  +L +I      ++ T++L ++
Sbjct: 30 RGDGSLKYILSGDGAGDLFIINENTGDIQATKRLDRE 66


>pdb|1AFI|A Chain A, Structure Of The Reduced Form Of Merp, The Periplasmic
          Protein From The Bacterial Mercury Detoxification
          System, Nmr, 20 Structures
 pdb|1AFJ|A Chain A, Structure Of The Mercury-Bound Form Of Merp, The
          Periplasmic Protein From The Bacterial Mercury
          Detoxification System, Nmr, 20 Structures
 pdb|2HQI|A Chain A, Nmr Solution Structure Of The Oxidized Form Of Merp, 14
          Structures
          Length = 72

 Score = 25.8 bits (55), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 26/57 (45%)

Query: 1  MTCKKCRKKAMKIAVKADGVIKVEIKGEGKDELVVIGNEVDSVKLTRKLQKKLGFAS 57
          MTC  C     K   K +GV KV++  E ++ +V   +   SV+   K     G+ S
Sbjct: 12 MTCAACPITVKKALSKVEGVSKVDVGFEKREAVVTFDDTKASVQKLTKATADAGYPS 68


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.135    0.408 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,827,275
Number of Sequences: 62578
Number of extensions: 73736
Number of successful extensions: 308
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 304
Number of HSP's gapped (non-prelim): 6
length of query: 113
length of database: 14,973,337
effective HSP length: 77
effective length of query: 36
effective length of database: 10,154,831
effective search space: 365573916
effective search space used: 365573916
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)