BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033712
(113 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q4A0G1|COPA_STAS1 Copper-exporting P-type ATPase A OS=Staphylococcus saprophyticus
subsp. saprophyticus (strain ATCC 15305 / DSM 20229)
GN=copA PE=3 SV=1
Length = 794
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 19/80 (23%), Positives = 35/80 (43%)
Query: 1 MTCKKCRKKAMKIAVKADGVIKVEIKGEGKDELVVIGNEVDSVKLTRKLQKKLGFASLLS 60
MTC C + K+ + DGV + + ++ + SV K +K+G+ +
Sbjct: 81 MTCAACSNRIEKVLNRTDGVDQATVNLTTENATISYNPSATSVDALIKKIQKIGYDAQPK 140
Query: 61 VQEEKDEKEKEKEKESKEIK 80
+ + +KE E SK +K
Sbjct: 141 KEVAEKSSQKELELRSKLVK 160
>sp|O27716|RL1_METTH 50S ribosomal protein L1P OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rpl1p PE=3 SV=2
Length = 212
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 1 MTCKKCRKKAMKIAVKADGVIKVEIKGEGKDELVVIGNEVDSVKLTRKLQKKLG 54
++ R K +KIAV ADG + ++ K G D LV+ +E++ + RK KKL
Sbjct: 47 VSLPNGRGKDVKIAVIADGELALQAKNAGAD-LVITKDELEELGKNRKEAKKLA 99
>sp|Q51770|MERP_PSEFL Mercuric transport protein periplasmic component OS=Pseudomonas
fluorescens GN=merP PE=3 SV=1
Length = 91
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 27/57 (47%)
Query: 1 MTCKKCRKKAMKIAVKADGVIKVEIKGEGKDELVVIGNEVDSVKLTRKLQKKLGFAS 57
MTC C K K DGV KV++ E ++ +V + SV+ K + G+ S
Sbjct: 31 MTCSACPITVKKAISKVDGVSKVDVTFETREAVVTFDDAKTSVQKLTKATEDAGYPS 87
>sp|Q86W92|LIPB1_HUMAN Liprin-beta-1 OS=Homo sapiens GN=PPFIBP1 PE=1 SV=2
Length = 1011
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 9/102 (8%)
Query: 10 AMKIAVKADGVIKVEIKGEGKDELVVIGNEVDSV----KLTRKLQKKLGFASLLSVQEEK 65
+M+ + K+ K E E D +++G VD+ LT LQK +SL ++++E
Sbjct: 418 SMETSEKSKLTPKPETSFEENDGNIILGATVDTQLCDKLLTSSLQKS---SSLGNLKKET 474
Query: 66 DEKEKEKEKESKEIKQNPIEWAYCSQFPP-PPYHQFVVDANP 106
+ EKE +++ E + P E PP PP +D NP
Sbjct: 475 SDGEKETIQKTSEDRA-PAESRPFGTLPPRPPGQDTSMDDNP 515
>sp|Q8NUQ9|COPA_STAAW Copper-exporting P-type ATPase A OS=Staphylococcus aureus (strain
MW2) GN=copA PE=3 SV=1
Length = 802
Score = 29.3 bits (64), Expect = 8.4, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Query: 1 MTCKKCRKKAMKIAVKADGVIKVEIKGEGKDELV-VIGNEVDSVKLTRKLQKKLGFASLL 59
MTC C + K+ K DGV + + V E D+ KL ++Q KLG+ + +
Sbjct: 81 MTCAACSSRIEKVLNKMDGVQNATVNLTTEQAKVDYYPEETDADKLVTRIQ-KLGYDASI 139
Query: 60 SVQEEKDEKEKEKEKESKEIK 80
+ K + + K IK
Sbjct: 140 KDNNKDQTSRKAEALQHKLIK 160
>sp|A8Z3F8|COPA_STAAT Copper-exporting P-type ATPase A OS=Staphylococcus aureus (strain
USA300 / TCH1516) GN=copA PE=3 SV=1
Length = 802
Score = 29.3 bits (64), Expect = 8.4, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Query: 1 MTCKKCRKKAMKIAVKADGVIKVEIKGEGKDELV-VIGNEVDSVKLTRKLQKKLGFASLL 59
MTC C + K+ K DGV + + V E D+ KL ++Q KLG+ + +
Sbjct: 81 MTCAACSSRIEKVLNKMDGVQNATVNLTTEQAKVDYYPEETDADKLVTRIQ-KLGYDASI 139
Query: 60 SVQEEKDEKEKEKEKESKEIK 80
+ K + + K IK
Sbjct: 140 KDNNKDQTSRKAEALQHKLIK 160
>sp|Q6G6B7|COPA_STAAS Copper-exporting P-type ATPase A OS=Staphylococcus aureus (strain
MSSA476) GN=copA PE=3 SV=1
Length = 802
Score = 29.3 bits (64), Expect = 8.4, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Query: 1 MTCKKCRKKAMKIAVKADGVIKVEIKGEGKDELV-VIGNEVDSVKLTRKLQKKLGFASLL 59
MTC C + K+ K DGV + + V E D+ KL ++Q KLG+ + +
Sbjct: 81 MTCAACSSRIEKVLNKMDGVQNATVNLTTEQAKVDYYPEETDADKLVTRIQ-KLGYDASI 139
Query: 60 SVQEEKDEKEKEKEKESKEIK 80
+ K + + K IK
Sbjct: 140 KDNNKDQTSRKAEALQHKLIK 160
>sp|A6QK47|COPA_STAAE Copper-exporting P-type ATPase A OS=Staphylococcus aureus (strain
Newman) GN=copA PE=3 SV=1
Length = 802
Score = 29.3 bits (64), Expect = 8.4, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Query: 1 MTCKKCRKKAMKIAVKADGVIKVEIKGEGKDELV-VIGNEVDSVKLTRKLQKKLGFASLL 59
MTC C + K+ K DGV + + V E D+ KL ++Q KLG+ + +
Sbjct: 81 MTCAACSSRIEKVLNKMDGVQNATVNLTTEQAKVDYYPEETDADKLVTRIQ-KLGYDASI 139
Query: 60 SVQEEKDEKEKEKEKESKEIK 80
+ K + + K IK
Sbjct: 140 KDNNKDQTSRKAEALQHKLIK 160
>sp|Q5HCZ3|COPA_STAAC Copper-exporting P-type ATPase A OS=Staphylococcus aureus (strain
COL) GN=copA PE=3 SV=1
Length = 802
Score = 29.3 bits (64), Expect = 8.4, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Query: 1 MTCKKCRKKAMKIAVKADGVIKVEIKGEGKDELV-VIGNEVDSVKLTRKLQKKLGFASLL 59
MTC C + K+ K DGV + + V E D+ KL ++Q KLG+ + +
Sbjct: 81 MTCAACSSRIEKVLNKMDGVQNATVNLTTEQAKVDYYPEETDADKLVTRIQ-KLGYDASI 139
Query: 60 SVQEEKDEKEKEKEKESKEIK 80
+ K + + K IK
Sbjct: 140 KDNNKDQTSRKAEALQHKLIK 160
>sp|Q2YWA3|COPA_STAAB Copper-exporting P-type ATPase A OS=Staphylococcus aureus (strain
bovine RF122 / ET3-1) GN=copA PE=3 SV=1
Length = 802
Score = 29.3 bits (64), Expect = 8.4, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Query: 1 MTCKKCRKKAMKIAVKADGVIKVEIKGEGKDELV-VIGNEVDSVKLTRKLQKKLGFASLL 59
MTC C + K+ K DGV + + V E D+ KL ++Q KLG+ + +
Sbjct: 81 MTCAACSSRIEKVLNKMDGVQNATVNLTTEQAKVDYYPEETDADKLVTRIQ-KLGYDASI 139
Query: 60 SVQEEKDEKEKEKEKESKEIK 80
+ K + + K IK
Sbjct: 140 KDNNKDQTSRKAEALQHKLIK 160
>sp|Q2FV64|COPA_STAA8 Copper-exporting P-type ATPase A OS=Staphylococcus aureus (strain
NCTC 8325) GN=copA PE=1 SV=1
Length = 802
Score = 29.3 bits (64), Expect = 8.4, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Query: 1 MTCKKCRKKAMKIAVKADGVIKVEIKGEGKDELV-VIGNEVDSVKLTRKLQKKLGFASLL 59
MTC C + K+ K DGV + + V E D+ KL ++Q KLG+ + +
Sbjct: 81 MTCAACSSRIEKVLNKMDGVQNATVNLTTEQAKVDYYPEETDADKLVTRIQ-KLGYDASI 139
Query: 60 SVQEEKDEKEKEKEKESKEIK 80
+ K + + K IK
Sbjct: 140 KDNNKDQTSRKAEALQHKLIK 160
>sp|Q2FDV0|COPA_STAA3 Copper-exporting P-type ATPase A OS=Staphylococcus aureus (strain
USA300) GN=copA PE=3 SV=1
Length = 802
Score = 29.3 bits (64), Expect = 8.4, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Query: 1 MTCKKCRKKAMKIAVKADGVIKVEIKGEGKDELV-VIGNEVDSVKLTRKLQKKLGFASLL 59
MTC C + K+ K DGV + + V E D+ KL ++Q KLG+ + +
Sbjct: 81 MTCAACSSRIEKVLNKMDGVQNATVNLTTEQAKVDYYPEETDADKLVTRIQ-KLGYDASI 139
Query: 60 SVQEEKDEKEKEKEKESKEIK 80
+ K + + K IK
Sbjct: 140 KDNNKDQTSRKAEALQHKLIK 160
>sp|O32220|COPA_BACSU Copper-exporting P-type ATPase A OS=Bacillus subtilis (strain 168)
GN=copA PE=1 SV=2
Length = 802
Score = 28.9 bits (63), Expect = 9.4, Method: Composition-based stats.
Identities = 25/101 (24%), Positives = 42/101 (41%), Gaps = 11/101 (10%)
Query: 1 MTCKKCRKKAMKIAVKADGVIKVEIKGEGKDELVVIGNEVDSVKLTRKLQKKLGFASLLS 60
MTC C + K K +GV + + V + SV ++ KLG+ L
Sbjct: 82 MTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDKLGYK--LK 139
Query: 61 VQEEKDEKEKEKEKESKE---------IKQNPIEWAYCSQF 92
++ E+D + K+KE ++ + P+ WA S F
Sbjct: 140 LKGEQDSEAAAKKKEERKQTARLIFSAVLSFPLLWAMVSHF 180
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.131 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,837,813
Number of Sequences: 539616
Number of extensions: 1786125
Number of successful extensions: 21510
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 160
Number of HSP's that attempted gapping in prelim test: 19619
Number of HSP's gapped (non-prelim): 1596
length of query: 113
length of database: 191,569,459
effective HSP length: 81
effective length of query: 32
effective length of database: 147,860,563
effective search space: 4731538016
effective search space used: 4731538016
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)