Query 033714
Match_columns 113
No_of_seqs 203 out of 1035
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 05:26:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033714.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033714hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00199 high mobility group p 100.0 1.5E-27 3.2E-32 152.8 11.2 90 18-107 3-93 (94)
2 cd01389 MATA_HMG-box MATA_HMG- 99.9 3.1E-23 6.8E-28 128.0 7.3 70 37-107 1-70 (77)
3 cd01388 SOX-TCF_HMG-box SOX-TC 99.9 1.8E-22 3.8E-27 123.2 7.3 69 38-107 2-70 (72)
4 PF00505 HMG_box: HMG (high mo 99.9 4.1E-22 9E-27 119.8 8.8 69 38-107 1-69 (69)
5 cd01390 HMGB-UBF_HMG-box HMGB- 99.9 1.6E-21 3.6E-26 116.1 8.7 65 38-103 1-65 (66)
6 PF09011 HMG_box_2: HMG-box do 99.9 2.2E-21 4.7E-26 118.7 8.8 72 35-107 1-73 (73)
7 smart00398 HMG high mobility g 99.9 2.6E-21 5.7E-26 116.0 8.6 70 37-107 1-70 (70)
8 COG5648 NHP6B Chromatin-associ 99.8 3.3E-21 7.2E-26 137.2 6.9 85 26-111 59-143 (211)
9 KOG0381 HMG box-containing pro 99.8 3.1E-19 6.7E-24 113.9 10.6 76 34-110 17-95 (96)
10 cd00084 HMG-box High Mobility 99.8 2.4E-19 5.2E-24 106.3 8.7 65 38-103 1-65 (66)
11 KOG0527 HMG-box transcription 99.8 9.4E-20 2E-24 138.7 5.8 77 30-107 55-131 (331)
12 KOG0526 Nucleosome-binding fac 99.7 6.6E-18 1.4E-22 133.5 7.5 79 25-108 523-601 (615)
13 KOG3248 Transcription factor T 99.5 1E-13 2.2E-18 105.0 6.4 72 37-109 191-262 (421)
14 KOG4715 SWI/SNF-related matrix 99.3 3.3E-12 7.2E-17 96.2 7.1 78 31-109 58-135 (410)
15 KOG0528 HMG-box transcription 99.2 4E-12 8.6E-17 99.9 3.2 72 35-107 323-394 (511)
16 KOG2746 HMG-box transcription 98.8 3.2E-09 6.9E-14 86.5 4.1 78 24-102 168-247 (683)
17 PF14887 HMG_box_5: HMG (high 98.7 6.7E-08 1.5E-12 59.3 6.8 72 37-110 3-74 (85)
18 PF04690 YABBY: YABBY protein; 97.7 0.00025 5.4E-09 49.8 7.4 49 32-81 116-164 (170)
19 PF06382 DUF1074: Protein of u 97.7 0.00028 6E-09 49.8 7.2 48 42-94 83-130 (183)
20 COG5648 NHP6B Chromatin-associ 97.6 5.7E-05 1.2E-09 54.4 2.7 68 36-104 142-209 (211)
21 PF08073 CHDNT: CHDNT (NUC034) 96.2 0.0059 1.3E-07 35.2 3.0 40 42-82 13-52 (55)
22 PF04769 MAT_Alpha1: Mating-ty 94.8 0.13 2.9E-06 37.1 6.4 57 31-94 37-93 (201)
23 PF06244 DUF1014: Protein of u 94.2 0.088 1.9E-06 35.2 4.0 46 37-83 72-117 (122)
24 TIGR03481 HpnM hopanoid biosyn 92.4 0.41 8.9E-06 34.3 5.4 45 64-108 64-110 (198)
25 PRK15117 ABC transporter perip 90.6 1.9 4E-05 31.2 7.3 44 65-108 69-114 (211)
26 KOG3223 Uncharacterized conser 87.1 1.4 3.1E-05 31.7 4.5 51 39-93 166-216 (221)
27 PF12881 NUT_N: NUT protein N 86.0 3.2 6.9E-05 32.0 6.1 54 42-96 229-282 (328)
28 PF05494 Tol_Tol_Ttg2: Toluene 85.2 1.5 3.2E-05 30.3 3.7 45 64-108 38-84 (170)
29 PF13875 DUF4202: Domain of un 76.8 6 0.00013 28.3 4.5 39 44-86 131-169 (185)
30 PF11304 DUF3106: Protein of u 76.8 12 0.00026 24.1 5.6 25 68-92 11-35 (107)
31 COG2854 Ttg2D ABC-type transpo 71.5 6.1 0.00013 28.6 3.5 40 70-109 77-117 (202)
32 PF01352 KRAB: KRAB box; Inte 63.6 4.9 0.00011 21.5 1.3 29 66-94 3-32 (41)
33 PRK09706 transcriptional repre 60.9 28 0.00061 22.9 4.9 42 68-109 87-128 (135)
34 PF06945 DUF1289: Protein of u 59.0 14 0.0003 20.6 2.7 25 65-94 23-47 (51)
35 PRK12750 cpxP periplasmic repr 58.1 27 0.00059 24.4 4.6 34 70-103 127-160 (170)
36 PRK12751 cpxP periplasmic stre 57.8 24 0.00052 24.6 4.3 33 68-100 118-150 (162)
37 PF00887 ACBP: Acyl CoA bindin 56.6 40 0.00087 20.5 4.8 53 45-99 30-86 (87)
38 TIGR00787 dctP tripartite ATP- 54.1 31 0.00068 25.0 4.6 29 74-102 213-241 (257)
39 PRK10236 hypothetical protein; 53.4 12 0.00027 27.7 2.3 27 68-94 117-143 (237)
40 COG1638 DctP TRAP-type C4-dica 53.2 32 0.0007 26.5 4.7 35 74-108 244-278 (332)
41 KOG1610 Corticosteroid 11-beta 49.1 45 0.00098 25.9 4.9 51 47-97 187-249 (322)
42 PRK10363 cpxP periplasmic repr 48.9 43 0.00094 23.5 4.4 35 67-101 111-145 (166)
43 PF12650 DUF3784: Domain of un 47.2 13 0.00029 23.1 1.5 16 76-91 25-40 (97)
44 cd07081 ALDH_F20_ACDH_EutE-lik 46.1 52 0.0011 26.4 5.0 40 68-107 6-45 (439)
45 PF03480 SBP_bac_7: Bacterial 44.5 39 0.00085 24.8 3.9 32 74-105 213-244 (286)
46 KOG4715 SWI/SNF-related matrix 44.3 50 0.0011 25.9 4.4 74 31-113 55-132 (410)
47 cd00225 API3 Ascaris pepsin in 39.6 42 0.00092 23.3 3.1 14 74-87 25-38 (159)
48 cd07132 ALDH_F3AB Aldehyde deh 39.2 83 0.0018 25.1 5.2 40 68-107 5-44 (443)
49 cd07122 ALDH_F20_ACDH Coenzyme 37.5 87 0.0019 25.1 5.1 40 68-107 6-45 (436)
50 cd07133 ALDH_CALDH_CalB Conife 37.1 1E+02 0.0022 24.4 5.4 39 68-106 5-43 (434)
51 KOG1827 Chromatin remodeling c 36.4 2.4 5.1E-05 35.6 -4.0 44 41-85 552-595 (629)
52 PF05388 Carbpep_Y_N: Carboxyp 36.0 62 0.0013 21.2 3.4 29 66-94 45-73 (113)
53 PF09791 Oxidored-like: Oxidor 35.6 65 0.0014 17.9 2.9 18 91-108 30-47 (48)
54 cd07087 ALDH_F3-13-14_CALDH-li 34.6 1.1E+02 0.0024 24.1 5.2 40 68-107 5-44 (426)
55 cd07085 ALDH_F6_MMSDH Methylma 33.4 1.1E+02 0.0024 24.4 5.2 36 70-105 47-82 (478)
56 PF09164 VitD-bind_III: Vitami 32.5 1.1E+02 0.0025 18.2 4.7 33 43-76 9-41 (68)
57 PF02026 RyR: RyR domain; Int 31.2 42 0.00091 21.1 1.9 19 77-95 61-79 (94)
58 cd07150 ALDH_VaniDH_like Pseud 31.0 1.2E+02 0.0027 23.8 5.0 36 70-105 30-65 (451)
59 cd07152 ALDH_BenzADH NAD-depen 30.4 1.4E+02 0.0029 23.6 5.1 37 70-106 22-58 (443)
60 PF06696 Strep_SA_rep: Strepto 30.3 46 0.001 16.0 1.5 13 96-108 7-19 (25)
61 PRK13252 betaine aldehyde dehy 29.9 1.3E+02 0.0029 24.1 5.1 37 70-106 53-89 (488)
62 PF15581 Imm35: Immunity prote 29.8 1E+02 0.0023 19.4 3.5 23 65-87 31-53 (93)
63 PRK13968 putative succinate se 29.7 1.4E+02 0.003 23.9 5.1 38 70-107 38-75 (462)
64 cd07099 ALDH_DDALDH Methylomon 29.2 1.5E+02 0.0032 23.4 5.2 36 70-105 27-62 (453)
65 cd07084 ALDH_KGSADH-like ALDH 29.1 1.3E+02 0.0027 24.0 4.7 39 68-106 6-44 (442)
66 cd07104 ALDH_BenzADH-like ALDH 28.7 1.5E+02 0.0033 23.1 5.1 38 68-105 7-44 (431)
67 PF06394 Pepsin-I3: Pepsin inh 28.6 77 0.0017 19.4 2.7 25 78-110 38-62 (76)
68 cd07136 ALDH_YwdH-P39616 Bacil 28.6 1.7E+02 0.0037 23.5 5.4 40 67-106 4-43 (449)
69 cd07137 ALDH_F3FHI Plant aldeh 28.6 1.6E+02 0.0035 23.4 5.2 39 68-106 6-44 (432)
70 PRK10455 periplasmic protein; 28.5 1.2E+02 0.0025 21.1 3.9 28 68-95 118-145 (161)
71 cd07077 ALDH-like NAD(P)+-depe 28.5 1.1E+02 0.0023 23.9 4.2 36 70-105 3-38 (397)
72 PRK00197 proA gamma-glutamyl p 28.2 1.4E+02 0.0031 23.5 4.9 40 68-107 11-50 (417)
73 smart00271 DnaJ DnaJ molecular 28.1 1.1E+02 0.0023 16.6 3.3 33 51-83 21-58 (60)
74 cd07098 ALDH_F15-22 Aldehyde d 27.8 1.7E+02 0.0038 23.2 5.4 37 70-106 27-63 (465)
75 PRK11241 gabD succinate-semial 27.7 1.5E+02 0.0033 23.9 5.0 33 74-106 61-93 (482)
76 cd07106 ALDH_AldA-AAD23400 Str 27.6 1.6E+02 0.0035 23.3 5.1 37 70-106 28-64 (446)
77 PRK11903 aldehyde dehydrogenas 27.4 1.4E+02 0.003 24.5 4.8 32 75-106 55-86 (521)
78 TIGR01780 SSADH succinate-semi 27.3 1.6E+02 0.0035 23.3 5.0 38 69-106 27-64 (448)
79 cd07129 ALDH_KGSADH Alpha-Keto 27.2 1.6E+02 0.0034 23.6 5.0 37 69-105 7-43 (454)
80 PHA02662 ORF131 putative membr 27.2 1.5E+02 0.0033 21.8 4.5 23 65-87 75-97 (226)
81 PTZ00037 DnaJ_C chaperone prot 27.1 1.4E+02 0.003 23.9 4.6 43 49-91 46-88 (421)
82 cd07108 ALDH_MGR_2402 Magnetos 26.9 1.7E+02 0.0036 23.3 5.1 37 70-106 28-64 (457)
83 cd07100 ALDH_SSADH1_GabD1 Myco 26.9 1.7E+02 0.0036 23.1 5.1 37 69-105 7-43 (429)
84 cd07101 ALDH_SSADH2_GabD2 Myco 26.8 1.6E+02 0.0036 23.3 5.0 36 71-106 28-63 (454)
85 cd07131 ALDH_AldH-CAJ73105 Unc 26.7 1.7E+02 0.0037 23.3 5.1 36 70-105 46-81 (478)
86 TIGR01804 BADH glycine betaine 26.2 1.7E+02 0.0037 23.3 5.0 37 70-106 44-80 (467)
87 cd01145 TroA_c Periplasmic bin 26.2 2.3E+02 0.0051 19.8 5.3 45 66-110 117-161 (203)
88 PLN02278 succinic semialdehyde 26.1 1.7E+02 0.0036 23.7 5.0 37 70-106 71-107 (498)
89 cd07138 ALDH_CddD_SSP0762 Rhod 26.0 1.6E+02 0.0036 23.4 4.9 38 69-106 44-81 (466)
90 cd07135 ALDH_F14-YMR110C Sacch 25.9 1.8E+02 0.0039 23.1 5.1 38 69-106 13-50 (436)
91 PRK13473 gamma-aminobutyraldeh 25.8 1.8E+02 0.0039 23.2 5.1 37 70-106 48-84 (475)
92 cd07147 ALDH_F21_RNP123 Aldehy 25.7 1.8E+02 0.0039 23.0 5.1 36 70-105 30-65 (452)
93 cd07559 ALDH_ACDHII_AcoD-like 25.4 1.9E+02 0.0041 23.3 5.1 37 70-106 47-83 (480)
94 TIGR01238 D1pyr5carbox3 delta- 25.3 1.8E+02 0.0039 23.6 5.1 36 70-105 83-118 (500)
95 cd07130 ALDH_F7_AASADH NAD+-de 25.0 1.9E+02 0.0042 23.1 5.2 37 69-105 42-78 (474)
96 cd01018 ZntC Metal binding pro 24.9 2.4E+02 0.0052 20.6 5.3 46 66-111 121-166 (266)
97 PF00171 Aldedh: Aldehyde dehy 24.9 1.8E+02 0.0038 23.1 4.9 39 68-106 36-74 (462)
98 PF07813 LTXXQ: LTXXQ motif fa 24.9 1.2E+02 0.0026 18.2 3.2 26 66-91 74-99 (100)
99 cd07079 ALDH_F18-19_ProA-GPR G 24.8 1.6E+02 0.0034 23.2 4.5 39 68-106 5-43 (406)
100 cd07121 ALDH_EutE Ethanolamine 24.7 1.8E+02 0.004 23.1 4.9 40 68-107 11-50 (429)
101 TIGR03240 arg_catab_astD succi 24.5 2E+02 0.0043 23.1 5.1 37 70-106 44-80 (484)
102 cd07151 ALDH_HBenzADH NADP+-de 24.5 1.9E+02 0.0042 23.0 5.0 38 69-106 40-77 (465)
103 PLN02315 aldehyde dehydrogenas 24.4 2E+02 0.0042 23.5 5.1 35 71-105 66-100 (508)
104 cd07097 ALDH_KGSADH-YcbD Bacil 24.4 2E+02 0.0043 23.0 5.1 36 71-106 47-82 (473)
105 cd07105 ALDH_SaliADH Salicylal 24.4 1.7E+02 0.0036 23.1 4.6 36 70-105 9-44 (432)
106 PF01297 TroA: Periplasmic sol 24.3 2.4E+02 0.0052 20.3 5.2 46 66-111 101-146 (256)
107 cd07086 ALDH_F7_AASADH-like NA 24.2 1.9E+02 0.0042 23.1 5.0 37 70-106 44-80 (478)
108 cd07092 ALDH_ABALDH-YdcW Esche 24.1 2.1E+02 0.0046 22.5 5.2 37 70-106 28-64 (450)
109 cd07145 ALDH_LactADH_F420-Bios 24.1 2E+02 0.0044 22.8 5.1 36 70-105 30-65 (456)
110 cd07088 ALDH_LactADH-AldA Esch 24.1 1.9E+02 0.0042 22.9 5.0 36 70-105 44-79 (468)
111 cd07110 ALDH_F10_BADH Arabidop 23.9 2E+02 0.0044 22.8 5.0 36 70-105 28-63 (456)
112 cd07095 ALDH_SGSD_AstD N-succi 23.9 2.1E+02 0.0045 22.6 5.1 38 68-105 7-44 (431)
113 cd07115 ALDH_HMSADH_HapE Pseud 23.8 2E+02 0.0042 22.8 5.0 39 68-106 26-64 (453)
114 cd07118 ALDH_SNDH Gluconobacte 23.8 2.6E+02 0.0056 22.2 5.6 30 77-106 37-66 (454)
115 PF11521 TFIIE-A_C-term: C-ter 23.8 71 0.0015 19.9 2.0 30 65-95 51-80 (86)
116 TIGR01722 MMSDH methylmalonic 23.6 2.2E+02 0.0047 22.8 5.2 37 69-105 46-82 (477)
117 cd07111 ALDH_F16 Aldehyde dehy 23.5 2.1E+02 0.0046 23.0 5.2 35 71-105 69-103 (480)
118 PLN02174 aldehyde dehydrogenas 23.5 2.1E+02 0.0046 23.3 5.1 37 70-106 19-55 (484)
119 cd07116 ALDH_ACDHII-AcoD Ralst 23.3 2.6E+02 0.0055 22.4 5.6 38 70-107 47-84 (479)
120 cd07093 ALDH_F8_HMSADH Human a 23.3 2.1E+02 0.0046 22.6 5.0 36 70-105 28-63 (455)
121 TIGR02518 EutH_ACDH acetaldehy 23.2 2.1E+02 0.0046 23.2 5.1 38 68-105 15-52 (488)
122 COG1012 PutA NAD-dependent ald 23.2 2.1E+02 0.0045 23.2 5.0 33 74-106 49-81 (472)
123 PLN02419 methylmalonate-semial 23.2 2.1E+02 0.0045 24.2 5.1 37 70-106 160-196 (604)
124 PLN02418 delta-1-pyrroline-5-c 23.2 1.9E+02 0.0041 24.8 5.0 40 68-107 301-340 (718)
125 TIGR03216 OH_muco_semi_DH 2-hy 23.0 1.9E+02 0.0042 23.1 4.8 30 77-106 53-82 (481)
126 PF08367 M16C_assoc: Peptidase 22.8 1.6E+02 0.0035 21.3 4.1 32 66-97 12-43 (248)
127 PRK09406 gabD1 succinic semial 22.8 1.8E+02 0.0039 23.2 4.6 37 70-106 32-68 (457)
128 cd07128 ALDH_MaoC-N N-terminal 22.8 1.9E+02 0.0041 23.7 4.7 31 75-105 51-81 (513)
129 cd07107 ALDH_PhdK-like Nocardi 22.6 2.2E+02 0.0049 22.5 5.1 36 70-105 28-63 (456)
130 cd08317 Death_ank Death domain 22.5 44 0.00095 20.2 0.8 19 64-82 5-23 (84)
131 COG4281 ACB Acyl-CoA-binding p 22.5 88 0.0019 19.3 2.1 61 37-99 16-85 (87)
132 cd01020 TroA_b Metal binding p 22.2 2.5E+02 0.0054 20.5 5.0 46 65-110 103-148 (264)
133 PF09655 Nitr_red_assoc: Conse 22.2 1.3E+02 0.0029 20.6 3.2 34 75-108 33-69 (144)
134 TIGR02299 HpaE 5-carboxymethyl 21.9 2.3E+02 0.005 22.7 5.1 36 70-105 47-82 (488)
135 PRK05439 pantothenate kinase; 21.9 2.4E+02 0.0052 21.7 4.9 54 41-95 6-60 (311)
136 TIGR03374 ABALDH 1-pyrroline d 21.8 2.3E+02 0.005 22.8 5.0 37 70-106 47-83 (472)
137 TIGR00407 proA gamma-glutamyl 21.7 1.2E+02 0.0026 24.0 3.3 34 73-106 4-37 (398)
138 cd07142 ALDH_F2BC Arabidosis a 21.7 3.1E+02 0.0067 21.9 5.7 30 77-106 59-88 (476)
139 PLN02203 aldehyde dehydrogenas 21.7 2.4E+02 0.0051 22.9 5.1 40 68-107 13-52 (484)
140 PRK09457 astD succinylglutamic 21.6 2.5E+02 0.0054 22.6 5.2 36 70-105 46-81 (487)
141 cd07134 ALDH_AlkH-like Pseudom 21.6 2.6E+02 0.0056 22.2 5.2 38 68-105 5-42 (433)
142 KOG2880 SMAD6 interacting prot 21.6 4.3E+02 0.0093 21.2 6.2 65 42-110 52-119 (424)
143 cd07140 ALDH_F1L_FTFDH 10-form 21.4 3.2E+02 0.0069 22.1 5.8 31 76-106 60-90 (486)
144 cd07103 ALDH_F5_SSADH_GabD Mit 21.3 2.6E+02 0.0056 22.0 5.2 35 71-105 29-63 (451)
145 PF13945 NST1: Salt tolerance 21.1 2.2E+02 0.0049 20.4 4.3 27 65-91 99-125 (190)
146 TIGR01237 D1pyr5carbox2 delta- 21.0 2.1E+02 0.0045 23.3 4.6 36 70-105 78-113 (511)
147 PHA03102 Small T antigen; Revi 20.7 1.4E+02 0.0031 20.5 3.2 37 50-86 26-62 (153)
148 cd07125 ALDH_PutA-P5CDH Delta( 20.5 2.5E+02 0.0054 22.8 5.0 36 70-105 78-113 (518)
149 TIGR01236 D1pyr5carbox1 delta- 20.5 2.1E+02 0.0045 23.6 4.5 36 70-105 78-114 (533)
150 PRK09407 gabD2 succinic semial 20.5 2.7E+02 0.0058 22.8 5.2 36 70-105 63-98 (524)
151 cd07083 ALDH_P5CDH ALDH subfam 20.4 2.2E+02 0.0047 23.0 4.6 36 70-105 64-99 (500)
152 cd07149 ALDH_y4uC Uncharacteri 20.3 2.6E+02 0.0057 22.0 5.0 37 69-105 29-65 (453)
153 PRK14296 chaperone protein Dna 20.2 2E+02 0.0044 22.5 4.3 41 51-91 24-67 (372)
No 1
>PTZ00199 high mobility group protein; Provisional
Probab=99.95 E-value=1.5e-27 Score=152.81 Aligned_cols=90 Identities=43% Similarity=0.682 Sum_probs=83.1
Q ss_pred cCCCCccCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHhhhcCCChhhhhHHHHHHHHHH
Q 033714 18 NKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRK 96 (113)
Q Consensus 18 ~k~~~~~~k~~~k~~~d~~~PKrP~say~lF~~~~r~~~~~~~p~~~-~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k 96 (113)
++.+.+.+++++++.+||+.|+||+|||+||++++|..|..+||+.. ++.+|+++||++|+.||+++|.+|+++|+.++
T Consensus 3 ~~~~~~~~k~~~k~~kdp~~PKrP~sAY~~F~~~~R~~i~~~~P~~~~~~~evsk~ige~Wk~ls~eeK~~y~~~A~~dk 82 (94)
T PTZ00199 3 KKQGKVLVRKNKRKKKDPNAPKRALSAYMFFAKEKRAEIIAENPELAKDVAAVGKMVGEAWNKLSEEEKAPYEKKAQEDK 82 (94)
T ss_pred ccccCccccccCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHCcCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 45566777788888999999999999999999999999999999942 38999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 033714 97 VEYEKDMKNYN 107 (113)
Q Consensus 97 ~~y~~~~~~y~ 107 (113)
.+|..+|.+|+
T Consensus 83 ~rY~~e~~~Y~ 93 (94)
T PTZ00199 83 VRYEKEKAEYA 93 (94)
T ss_pred HHHHHHHHHHh
Confidence 99999999996
No 2
>cd01389 MATA_HMG-box MATA_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include the fungal mating type gene products MC, MATA1 and Ste11.
Probab=99.89 E-value=3.1e-23 Score=127.98 Aligned_cols=70 Identities=27% Similarity=0.451 Sum_probs=67.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHH
Q 033714 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 107 (113)
Q Consensus 37 ~PKrP~say~lF~~~~r~~~~~~~p~~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y~ 107 (113)
.|+||+||||||+++.|..|+.+||+ +++.+|+++||++|+.||+++|++|.++|++++++|..++++|+
T Consensus 1 ~~kRP~naf~lf~~~~r~~~~~~~p~-~~~~eisk~~g~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~p~Yk 70 (77)
T cd01389 1 KIPRPRNAFILYRQDKHAQLKTENPG-LTNNEISRIIGRMWRSESPEVKAYYKELAEEEKERHAREYPDYK 70 (77)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHCCCCc
Confidence 48999999999999999999999999 59999999999999999999999999999999999999999986
No 3
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=99.88 E-value=1.8e-22 Score=123.21 Aligned_cols=69 Identities=33% Similarity=0.552 Sum_probs=66.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHH
Q 033714 38 PKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 107 (113)
Q Consensus 38 PKrP~say~lF~~~~r~~~~~~~p~~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y~ 107 (113)
.+||+|||++|++++|..++.+||+ +++.+|+++||++|+.||+++|++|.++|+.++++|.+++++|+
T Consensus 2 iKrP~naf~~F~~~~r~~~~~~~p~-~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~p~y~ 70 (72)
T cd01388 2 IKRPMNAFMLFSKRHRRKVLQEYPL-KENRAISKILGDRWKALSNEEKQPYYEEAKKLKELHMKLYPDYK 70 (72)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHCcCCC
Confidence 5899999999999999999999999 59999999999999999999999999999999999999999884
No 4
>PF00505 HMG_box: HMG (high mobility group) box; InterPro: IPR000910 High mobility group (HMG or HMGB) proteins are a family of relatively low molecular weight non-histone components in chromatin. HMG1 (also called HMG-T in fish) and HMG2 are two highly related proteins that bind single-stranded DNA preferentially and unwind double-stranded DNA. Although they have no sequence specificity, they have a high affinity for bent or distorted DNA, and bend linear DNA. HMG1 and HMG2 contain two DNA-binding HMG-box domains (A and B) that show structural and functional differences, and have a long acidic C-terminal domain rich in aspartic and glutamic acid residues. The acidic tail modulates the affinity of the tandem HMG boxes in HMG1 and 2 for a variety of DNA targets. HMG1 and 2 appear to play important architectural roles in the assembly of nucleoprotein complexes in a variety of biological processes, for example V(D)J recombination, the initiation of transcription, and DNA repair []. The profile in this entry describing the HMG-domains is much more general than the signature. In addition to the HMG1 and HMG2 proteins, HMG-domains occur in single or multiple copies in the following protein classes; the SOX family of transcription factors; SRY sex determining region Y protein and related proteins []; LEF1 lymphoid enhancer binding factor 1 []; SSRP recombination signal recognition protein; MTF1 mitochondrial transcription factor 1; UBF1/2 nucleolar transcription factors; Abf2 yeast ARS-binding factor []; and Saccharomyces cerevisiae transcription factors Ixr1, Rox1, Nhp6a, Nhp6b and Spp41.; GO: 0003677 DNA binding; PDB: 1I11_A 1J3C_A 1J3D_A 1WZ6_A 1WGF_A 2D7L_A 1GT0_D 3U2B_C 2CRJ_A 2CS1_A ....
Probab=99.88 E-value=4.1e-22 Score=119.80 Aligned_cols=69 Identities=42% Similarity=0.758 Sum_probs=65.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHH
Q 033714 38 PKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 107 (113)
Q Consensus 38 PKrP~say~lF~~~~r~~~~~~~p~~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y~ 107 (113)
|+||+|||+||+.+.+..++.+||+ ++..+|+++||++|++||+++|.+|.+.|.+++.+|..+|++|+
T Consensus 1 PkrP~~af~lf~~~~~~~~k~~~p~-~~~~~i~~~~~~~W~~l~~~eK~~y~~~a~~~~~~y~~~~~~y~ 69 (69)
T PF00505_consen 1 PKRPPNAFMLFCKEKRAKLKEENPD-LSNKEISKILAQMWKNLSEEEKAPYKEEAEEEKERYEKEMPEYK 69 (69)
T ss_dssp SSSS--HHHHHHHHHHHHHHHHSTT-STHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCHHHHHHHHHHHHHHHHhcc-cccccchhhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8999999999999999999999999 59999999999999999999999999999999999999999996
No 5
>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.
Probab=99.86 E-value=1.6e-21 Score=116.14 Aligned_cols=65 Identities=54% Similarity=0.844 Sum_probs=63.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHH
Q 033714 38 PKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDM 103 (113)
Q Consensus 38 PKrP~say~lF~~~~r~~~~~~~p~~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~ 103 (113)
|++|+|||++|++++|..+..+||+ +++.+|++.||++|++||+++|++|.+.|++++.+|..+|
T Consensus 1 Pkrp~saf~~f~~~~r~~~~~~~p~-~~~~~i~~~~~~~W~~ls~~eK~~y~~~a~~~~~~y~~e~ 65 (66)
T cd01390 1 PKRPLSAYFLFSQEQRPKLKKENPD-ASVTEVTKILGEKWKELSEEEKKKYEEKAEKDKERYEKEM 65 (66)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHCcC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 8999999999999999999999999 5999999999999999999999999999999999999987
No 6
>PF09011 HMG_box_2: HMG-box domain; InterPro: IPR015101 This domain is predominantly found in Maelstrom homologue proteins. It has no known function. ; GO: 0005634 nucleus; PDB: 2EQZ_A 1V64_A 2CTO_A 1H5P_A 3TQ6_A 3FGH_A 3TMM_A 1J3X_A 2YRQ_A 1AAB_A ....
Probab=99.86 E-value=2.2e-21 Score=118.66 Aligned_cols=72 Identities=46% Similarity=0.807 Sum_probs=63.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHh-CCCCCCHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHH
Q 033714 35 PNKPKRPASAFFVFMEEFREQYKKD-HPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 107 (113)
Q Consensus 35 ~~~PKrP~say~lF~~~~r~~~~~~-~p~~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y~ 107 (113)
|++|++|+|||+||+.+++..++.+ ++. .++.|+++.|+..|++||++||.+|+++|++++++|..+|..|+
T Consensus 1 p~kpK~~~say~lF~~~~~~~~k~~G~~~-~~~~e~~k~~~~~Wk~Ls~~EK~~Y~~~A~~~k~~y~~e~~~~~ 73 (73)
T PF09011_consen 1 PKKPKRPPSAYNLFMKEMRKEVKEEGGQK-QSFREVMKEISERWKSLSEEEKEPYEERAKEDKERYEREMKEWN 73 (73)
T ss_dssp SSS--SSSSHHHHHHHHHHHHHHHHT-T--SSHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred CcCCCCCCCHHHHHHHHHHHHHHHhcccC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 6789999999999999999999988 665 58999999999999999999999999999999999999999995
No 7
>smart00398 HMG high mobility group.
Probab=99.86 E-value=2.6e-21 Score=116.03 Aligned_cols=70 Identities=49% Similarity=0.806 Sum_probs=67.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHH
Q 033714 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 107 (113)
Q Consensus 37 ~PKrP~say~lF~~~~r~~~~~~~p~~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y~ 107 (113)
+|++|+|||++|++++|..+..+||+ +++.+|+++||.+|+.||+++|++|.++|.+++.+|..++..|+
T Consensus 1 ~pkrp~~~y~~f~~~~r~~~~~~~~~-~~~~~i~~~~~~~W~~l~~~ek~~y~~~a~~~~~~y~~~~~~y~ 70 (70)
T smart00398 1 KPKRPMSAFMLFSQENRAKIKAENPD-LSNAEISKKLGERWKLLSEEEKAPYEEKAKKDKERYEEEMPEYK 70 (70)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHHCcC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 58999999999999999999999999 59999999999999999999999999999999999999999884
No 8
>COG5648 NHP6B Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
Probab=99.84 E-value=3.3e-21 Score=137.19 Aligned_cols=85 Identities=35% Similarity=0.736 Sum_probs=81.0
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHH
Q 033714 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKN 105 (113)
Q Consensus 26 k~~~k~~~d~~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~ 105 (113)
+..+++.+||+.|+||+||||+|+.++|+++..++|+ +++.+|++++|++|++|+++||++|...|..+.++|..++..
T Consensus 59 k~~~r~k~dpN~PKRp~sayf~y~~~~R~ei~~~~p~-l~~~e~~k~~~e~WK~Ltd~eke~y~k~~~~~~erYq~ek~~ 137 (211)
T COG5648 59 KRLVRKKKDPNGPKRPLSAYFLYSAENRDEIRKENPK-LTFGEVGKLLSEKWKELTDEEKEPYYKEANSDRERYQREKEE 137 (211)
T ss_pred HHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHhCCC-CChHHHHHHHHHHHHhccHhhhhhHHHHHhhHHHHHHHHHHh
Confidence 5667889999999999999999999999999999999 599999999999999999999999999999999999999999
Q ss_pred HHHhhh
Q 033714 106 YNRRQV 111 (113)
Q Consensus 106 y~~~~~ 111 (113)
|..++.
T Consensus 138 y~~k~~ 143 (211)
T COG5648 138 YNKKLP 143 (211)
T ss_pred hhcccC
Confidence 998764
No 9
>KOG0381 consensus HMG box-containing protein [General function prediction only]
Probab=99.81 E-value=3.1e-19 Score=113.86 Aligned_cols=76 Identities=47% Similarity=0.788 Sum_probs=72.7
Q ss_pred CC--CCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHH-HHHHhh
Q 033714 34 DP--NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMK-NYNRRQ 110 (113)
Q Consensus 34 d~--~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~-~y~~~~ 110 (113)
|| +.|++|++||++|+.+.+..++.+||+ +++.+|++++|++|++|++++|.+|...|..++++|..+|. +|+..+
T Consensus 17 ~p~~~~pkrp~sa~~~f~~~~~~~~k~~~p~-~~~~~v~k~~g~~W~~l~~~~k~~y~~ka~~~k~~Y~~~~~~~~~~~~ 95 (96)
T KOG0381|consen 17 DPNAQAPKRPLSAFFLFSSEQRSKIKAENPG-LSVGEVAKALGEMWKNLAEEEKQPYEEKASKLKEKYEKELAGEYKASL 95 (96)
T ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 66 599999999999999999999999999 69999999999999999999999999999999999999999 998865
No 10
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=99.81 E-value=2.4e-19 Score=106.30 Aligned_cols=65 Identities=51% Similarity=0.812 Sum_probs=62.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHH
Q 033714 38 PKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDM 103 (113)
Q Consensus 38 PKrP~say~lF~~~~r~~~~~~~p~~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~ 103 (113)
|++|+|||++|+++.+..+..++|+ .+..+|++.||.+|+.|++++|.+|.+.|..++.+|..++
T Consensus 1 pkrp~~af~~f~~~~~~~~~~~~~~-~~~~~i~~~~~~~W~~l~~~~k~~y~~~a~~~~~~y~~~~ 65 (66)
T cd00084 1 PKRPLSAYFLFSQEHRAEVKAENPG-LSVGEISKILGEMWKSLSEEEKKKYEEKAEKDKERYEKEM 65 (66)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHCcC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 7899999999999999999999999 5999999999999999999999999999999999999875
No 11
>KOG0527 consensus HMG-box transcription factor [Transcription]
Probab=99.79 E-value=9.4e-20 Score=138.69 Aligned_cols=77 Identities=31% Similarity=0.578 Sum_probs=72.0
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHH
Q 033714 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 107 (113)
Q Consensus 30 k~~~d~~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y~ 107 (113)
.........||||||||+|.+..|.++..++|++ .+.||+|.||.+|+.|+++||.+|+++|++++..|.+++++|+
T Consensus 55 ~~k~~~~hIKRPMNAFMVWSq~~RRkma~qnP~m-HNSEISK~LG~~WK~Lse~EKrPFi~EAeRLR~~HmkehPdYK 131 (331)
T KOG0527|consen 55 KDKTSTDRIKRPMNAFMVWSQGQRRKLAKQNPKM-HNSEISKRLGAEWKLLSEEEKRPFVDEAERLRAQHMKEYPDYK 131 (331)
T ss_pred cCCCCccccCCCcchhhhhhHHHHHHHHHhCcch-hhHHHHHHHHHHHhhcCHhhhccHHHHHHHHHHHHHHhCCCcc
Confidence 3445567899999999999999999999999995 9999999999999999999999999999999999999999986
No 12
>KOG0526 consensus Nucleosome-binding factor SPN, POB3 subunit [Transcription; Replication, recombination and repair; Chromatin structure and dynamics]
Probab=99.73 E-value=6.6e-18 Score=133.45 Aligned_cols=79 Identities=46% Similarity=0.731 Sum_probs=74.0
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHH
Q 033714 25 GRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMK 104 (113)
Q Consensus 25 ~k~~~k~~~d~~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~ 104 (113)
+.++.|+.+||++||||+||||||++..|..++.+ + .++++|++.+|++|+.||. |.+|++.|+.++.+|+.+|.
T Consensus 523 ~~k~~kk~kdpnapkra~sa~m~w~~~~r~~ik~d--g-i~~~dv~kk~g~~wk~ms~--k~~we~ka~~dk~ry~~em~ 597 (615)
T KOG0526|consen 523 KKKKGKKKKDPNAPKRATSAYMLWLNASRESIKED--G-ISVGDVAKKAGEKWKQMSA--KEEWEDKAAVDKQRYEDEMK 597 (615)
T ss_pred cccCcccCCCCCCCccchhHHHHHHHhhhhhHhhc--C-chHHHHHHHHhHHHhhhcc--cchhhHHHHHHHHHHHHHHH
Confidence 44778889999999999999999999999999987 6 4999999999999999999 89999999999999999999
Q ss_pred HHHH
Q 033714 105 NYNR 108 (113)
Q Consensus 105 ~y~~ 108 (113)
+|+.
T Consensus 598 ~yk~ 601 (615)
T KOG0526|consen 598 EYKN 601 (615)
T ss_pred hhcC
Confidence 9984
No 13
>KOG3248 consensus Transcription factor TCF-4 [Transcription]
Probab=99.47 E-value=1e-13 Score=104.97 Aligned_cols=72 Identities=25% Similarity=0.453 Sum_probs=66.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 033714 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 109 (113)
Q Consensus 37 ~PKrP~say~lF~~~~r~~~~~~~p~~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y~~~ 109 (113)
..|+|+||||||++|.|..|..++-- ....+|.++||.+|.+||.||..+|.++|+++++.|.+.+.+|-+.
T Consensus 191 hiKKPLNAFmlyMKEmRa~vvaEctl-KeSAaiNqiLGrRWH~LSrEEQAKYyElArKerqlH~qlYP~WSAR 262 (421)
T KOG3248|consen 191 HIKKPLNAFMLYMKEMRAKVVAECTL-KESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSAR 262 (421)
T ss_pred cccccHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCcchh
Confidence 67899999999999999999999875 4788999999999999999999999999999999999998888653
No 14
>KOG4715 consensus SWI/SNF-related matrix-associated actin-dependent regulator of chromatin [Chromatin structure and dynamics]
Probab=99.34 E-value=3.3e-12 Score=96.23 Aligned_cols=78 Identities=26% Similarity=0.570 Sum_probs=72.6
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 033714 31 AAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 109 (113)
Q Consensus 31 ~~~d~~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y~~~ 109 (113)
..+-|.+|-+|+-+||.|+...+++|+..||+ +...||.++||.||..|+++||+.|.+.++.++..|.+.|..|...
T Consensus 58 ~pkpPkppekpl~pymrySrkvWd~VkA~nPe-~kLWeiGK~Ig~mW~dLpd~EK~ey~~EYeaEKieY~~smkayh~s 135 (410)
T KOG4715|consen 58 RPKPPKPPEKPLMPYMRYSRKVWDQVKASNPE-LKLWEIGKIIGGMWLDLPDEEKQEYLNEYEAEKIEYNESMKAYHNS 135 (410)
T ss_pred CCCCCCCCCcccchhhHHhhhhhhhhhccCcc-hHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 34456788899999999999999999999999 6999999999999999999999999999999999999999999764
No 15
>KOG0528 consensus HMG-box transcription factor SOX5 [Transcription]
Probab=99.24 E-value=4e-12 Score=99.94 Aligned_cols=72 Identities=25% Similarity=0.462 Sum_probs=67.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHH
Q 033714 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 107 (113)
Q Consensus 35 ~~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y~ 107 (113)
+...|||+||||+|.++.|..+...+||+ .+..|+++||.+|+.||..||++|.++-..+-..|.+..++|+
T Consensus 323 ~PHIKRPMNAFMVWAkDERRKILqA~PDM-HNSnISKILGSRWKaMSN~eKQPYYEEQaRLSk~HlEk~PdYr 394 (511)
T KOG0528|consen 323 EPHIKRPMNAFMVWAKDERRKILQAFPDM-HNSNISKILGSRWKAMSNTEKQPYYEEQARLSKLHLEKYPDYR 394 (511)
T ss_pred CccccCCcchhhcccchhhhhhhhcCccc-cccchhHHhcccccccccccccchHHHHHHHHHhhhccCcccc
Confidence 45779999999999999999999999996 8999999999999999999999999999888889998888886
No 16
>KOG2746 consensus HMG-box transcription factor Capicua and related proteins [Transcription]
Probab=98.83 E-value=3.2e-09 Score=86.45 Aligned_cols=78 Identities=23% Similarity=0.374 Sum_probs=69.4
Q ss_pred cCCCCCCCCCCCCCCCCCCCHHHHHHHHHH--HHHHHhCCCCCCHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHH
Q 033714 24 AGRKSGKAAKDPNKPKRPASAFFVFMEEFR--EQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101 (113)
Q Consensus 24 ~~k~~~k~~~d~~~PKrP~say~lF~~~~r--~~~~~~~p~~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~ 101 (113)
....+...+.+....++|||+|++|++.+| ..+...||+ ..+..|+++||+.|-.|.+.||+.|.++|.+.++.|.+
T Consensus 168 ~kdgrspnkr~k~HirrPMnaf~ifskrhr~~g~vhq~~pn-~DNrtIskiLgewWytL~~~Ekq~yhdLa~Qvk~Ahfk 246 (683)
T KOG2746|consen 168 EKDGRSPNKRDKDHIRRPMNAFHIFSKRHRGEGRVHQRHPN-QDNRTISKILGEWWYTLGPNEKQKYHDLAFQVKEAHFK 246 (683)
T ss_pred ccccCCCCcCcchhhhhhhHHHHHHHhhcCCccchhccCcc-ccchhHHHHHhhhHhhhCchhhhhHHHHHHHHHHHHhh
Confidence 334455556666788999999999999999 889999999 69999999999999999999999999999999999987
Q ss_pred H
Q 033714 102 D 102 (113)
Q Consensus 102 ~ 102 (113)
+
T Consensus 247 a 247 (683)
T KOG2746|consen 247 A 247 (683)
T ss_pred h
Confidence 6
No 17
>PF14887 HMG_box_5: HMG (high mobility group) box 5; PDB: 1L8Y_A 1L8Z_A 2HDZ_A.
Probab=98.73 E-value=6.7e-08 Score=59.26 Aligned_cols=72 Identities=19% Similarity=0.383 Sum_probs=59.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 033714 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 110 (113)
Q Consensus 37 ~PKrP~say~lF~~~~r~~~~~~~p~~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y~~~~ 110 (113)
-|..|.+|--+|.++....+...++.. ...+ .+.+...|++|++.+|.+|+..|.++..+|+.+|.+|+.-.
T Consensus 3 lPE~PKt~qe~Wqq~vi~dYla~~~~d-r~K~-~kam~~~W~~me~Kekl~WIkKA~EdqKrYE~el~e~r~~~ 74 (85)
T PF14887_consen 3 LPETPKTAQEIWQQSVIGDYLAKFRND-RKKA-LKAMEAQWSQMEKKEKLKWIKKAAEDQKRYERELREMRSAP 74 (85)
T ss_dssp -S----THHHHHHHHHHHHHHHHTTST-HHHH-HHHHHHHHHTTGGGHHHHHHHHHHHHHHHHHHHHHCCS-CC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhhHh-HHHH-HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 577899999999999999999999983 4444 66999999999999999999999999999999999987643
No 18
>PF04690 YABBY: YABBY protein; InterPro: IPR006780 YABBY proteins are a group of plant-specific transcription factors involved in the specification of abaxial polarity in lateral organs such as leaves and floral organs [, ].
Probab=97.70 E-value=0.00025 Score=49.83 Aligned_cols=49 Identities=29% Similarity=0.426 Sum_probs=42.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCC
Q 033714 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81 (113)
Q Consensus 32 ~~d~~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~eisk~l~~~Wk~ls 81 (113)
.+.|.+-.|-+|||..|+++....|+..+|++ +..|+....+..|...+
T Consensus 116 ~kPPEKRqR~psaYn~f~k~ei~rik~~~p~i-shkeaFs~aAknW~h~p 164 (170)
T PF04690_consen 116 NKPPEKRQRVPSAYNRFMKEEIQRIKAENPDI-SHKEAFSAAAKNWAHFP 164 (170)
T ss_pred cCCccccCCCchhHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHhhhhCc
Confidence 34455556889999999999999999999995 99999999999998765
No 19
>PF06382 DUF1074: Protein of unknown function (DUF1074); InterPro: IPR024460 This family consists of several proteins which appear to be specific to Insecta. The function of this family is unknown.
Probab=97.67 E-value=0.00028 Score=49.76 Aligned_cols=48 Identities=29% Similarity=0.465 Sum_probs=41.9
Q ss_pred CCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCChhhhhHHHHHHHH
Q 033714 42 ASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEK 94 (113)
Q Consensus 42 ~say~lF~~~~r~~~~~~~p~~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~ 94 (113)
-+||+-|+.+++.. |.+ ++..|+....+.+|..|++++|..|..++..
T Consensus 83 nnaYLNFLReFRrk----h~~-L~p~dlI~~AAraW~rLSe~eK~rYrr~~~~ 130 (183)
T PF06382_consen 83 NNAYLNFLREFRRK----HCG-LSPQDLIQRAARAWCRLSEAEKNRYRRMAPS 130 (183)
T ss_pred chHHHHHHHHHHHH----ccC-CCHHHHHHHHHHHHHhCCHHHHHHHHhhcch
Confidence 57899999997764 566 6999999999999999999999999987653
No 20
>COG5648 NHP6B Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
Probab=97.56 E-value=5.7e-05 Score=54.41 Aligned_cols=68 Identities=24% Similarity=0.353 Sum_probs=62.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHH
Q 033714 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMK 104 (113)
Q Consensus 36 ~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~ 104 (113)
.+|..|..+|+-+-...|..+...+|+ ....+++++++..|.+|+++-+.+|.+.+..++..|...++
T Consensus 142 ~~~~~~~~~~~e~~~~~r~~~~~~~~~-~~~~e~~k~~~~~w~el~~skK~~~~~~~Kk~k~~~~~~~~ 209 (211)
T COG5648 142 LPNKAPIGPFIENEPKIRPKVEGPSPD-KALVEETKIISKAWSELDESKKKKYIDKYKKLKEEYDSFYP 209 (211)
T ss_pred cCCCCCCchhhhccHHhccccCCCCcc-hhhhHHhhhhhhhhhhhChhhhhHHHHHHHHHHHHHhhhcc
Confidence 467888899999999999999999998 58999999999999999999999999999999999987764
No 21
>PF08073 CHDNT: CHDNT (NUC034) domain; InterPro: IPR012958 The CHD N-terminal domain is found in PHD/RING fingers and chromo domain-associated helicases [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0008270 zinc ion binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=96.25 E-value=0.0059 Score=35.25 Aligned_cols=40 Identities=20% Similarity=0.378 Sum_probs=35.2
Q ss_pred CCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCCh
Q 033714 42 ASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82 (113)
Q Consensus 42 ~say~lF~~~~r~~~~~~~p~~~~~~eisk~l~~~Wk~ls~ 82 (113)
.+.|-+|.+..|+.|...||++ ..+.+...++..|+.-++
T Consensus 13 lt~yK~Fsq~vRP~l~~~NPk~-~~sKl~~l~~AKwrEF~~ 52 (55)
T PF08073_consen 13 LTNYKAFSQHVRPLLAKANPKA-PMSKLMMLLQAKWREFQE 52 (55)
T ss_pred HHHHHHHHHHHHHHHHHHCCCC-cHHHHHHHHHHHHHHHHh
Confidence 3568899999999999999995 999999999999986543
No 22
>PF04769 MAT_Alpha1: Mating-type protein MAT alpha 1; InterPro: IPR006856 This family includes Saccharomyces cerevisiae (Baker's yeast) mating type protein alpha 1 (P01365 from SWISSPROT). MAT alpha 1 is a transcription activator that activates mating-type alpha-specific genes with the help of the MADS-box containing MCM1 transcription factor, which together bind cooperatively to PQ elements upstream of alpha-specific genes. The MCM1-MATalpha1 complex is required for the proper DNA-bending that is needed for transcriptional activation []. Alpha 1 interacts in vivo with STE12, linking expression of alpha-specific genes to the alpha-pheromone (IPR006742 from INTERPRO) response pathway [].; GO: 0000772 mating pheromone activity, 0003677 DNA binding, 0045895 positive regulation of transcription, mating-type specific, 0005634 nucleus
Probab=94.82 E-value=0.13 Score=37.07 Aligned_cols=57 Identities=19% Similarity=0.314 Sum_probs=41.0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCChhhhhHHHHHHHH
Q 033714 31 AAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEK 94 (113)
Q Consensus 31 ~~~d~~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~ 94 (113)
.......++||+|+||+|..-.- ...|+ ....+++..|+..|..=+ -|..|.-.|..
T Consensus 37 ~~~~~~~~kr~lN~Fm~FRsyy~----~~~~~-~~Qk~~S~~l~~lW~~dp--~k~~W~l~ak~ 93 (201)
T PF04769_consen 37 RKRSPEKAKRPLNGFMAFRSYYS----PIFPP-LPQKELSGILTKLWEKDP--FKNKWSLMAKA 93 (201)
T ss_pred ccccccccccchhHHHHHHHHHH----hhcCC-cCHHHHHHHHHHHHhCCc--cHhHHHHHhhh
Confidence 33445578999999999987654 44566 478899999999998732 25556655544
No 23
>PF06244 DUF1014: Protein of unknown function (DUF1014); InterPro: IPR010422 This family consists of several hypothetical eukaryotic proteins of unknown function.
Probab=94.24 E-value=0.088 Score=35.18 Aligned_cols=46 Identities=17% Similarity=0.288 Sum_probs=40.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCChh
Q 033714 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83 (113)
Q Consensus 37 ~PKrP~say~lF~~~~r~~~~~~~p~~~~~~eisk~l~~~Wk~ls~~ 83 (113)
+-+|-.-||.-|.....+.++.++|+ +..+++-.+|-.+|...++.
T Consensus 72 PErR~KAAy~afeE~~Lp~lK~E~Pg-LrlsQ~kq~l~K~w~KSPeN 117 (122)
T PF06244_consen 72 PERRMKAAYKAFEERRLPELKEENPG-LRLSQYKQMLWKEWQKSPEN 117 (122)
T ss_pred cchhHHHHHHHHHHHHhHHHHhhCCC-chHHHHHHHHHHHHhcCCCC
Confidence 34455689999999999999999999 69999999999999887754
No 24
>TIGR03481 HpnM hopanoid biosynthesis associated membrane protein HpnM. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins are members of the pfam05494 family of putative transporters known as "toluene tolerance protein Ttg2D", although it is unlikely that the members included here have anything to do with toluene per-se.
Probab=92.41 E-value=0.41 Score=34.29 Aligned_cols=45 Identities=18% Similarity=0.438 Sum_probs=38.4
Q ss_pred CCHHHHHH-HHHhhhcCCChhhhhHHHHHHHH-HHHHHHHHHHHHHH
Q 033714 64 KSVAAVGK-AGGEKWKSMSEADKAPYVAKAEK-RKVEYEKDMKNYNR 108 (113)
Q Consensus 64 ~~~~eisk-~l~~~Wk~ls~~eK~~y~~~a~~-~k~~y~~~~~~y~~ 108 (113)
.++..|++ .||..|+.+|+++++.|.+.... ....|-..+..|..
T Consensus 64 ~Df~~mar~vLG~~W~~~s~~Qr~~F~~~F~~~l~~tY~~~l~~y~~ 110 (198)
T TIGR03481 64 FDLPAMARLTLGSSWTSLSPEQRRRFIGAFRELSIATYASQFKSYAG 110 (198)
T ss_pred CCHHHHHHHHhhhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 36777776 68999999999999999999988 67888888888864
No 25
>PRK15117 ABC transporter periplasmic binding protein MlaC; Provisional
Probab=90.62 E-value=1.9 Score=31.19 Aligned_cols=44 Identities=23% Similarity=0.363 Sum_probs=36.8
Q ss_pred CHHHHHH-HHHhhhcCCChhhhhHHHHHHHHH-HHHHHHHHHHHHH
Q 033714 65 SVAAVGK-AGGEKWKSMSEADKAPYVAKAEKR-KVEYEKDMKNYNR 108 (113)
Q Consensus 65 ~~~eisk-~l~~~Wk~ls~~eK~~y~~~a~~~-k~~y~~~~~~y~~ 108 (113)
++..+++ .||..|+.+|+++++.|.+..... ..-|-..+..|..
T Consensus 69 Df~~~s~~vLG~~wr~as~eQr~~F~~~F~~~Lv~tYa~~l~~y~~ 114 (211)
T PRK15117 69 QVKYAGALVLGRYYKDATPAQREAYFAAFREYLKQAYGQALAMYHG 114 (211)
T ss_pred CHHHHHHHHhhhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 6777766 689999999999999999988874 5678888888864
No 26
>KOG3223 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.10 E-value=1.4 Score=31.69 Aligned_cols=51 Identities=24% Similarity=0.369 Sum_probs=43.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCChhhhhHHHHHHH
Q 033714 39 KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAE 93 (113)
Q Consensus 39 KrP~say~lF~~~~r~~~~~~~p~~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~ 93 (113)
+|=.-||.-|-....+.|+.++|+ +..++.-.+|-.+|..-++. ||.+.+.
T Consensus 166 kRmrAA~~afEe~~LPrLK~e~P~-lrlsQ~Kqll~Kew~KsPDN---P~Nq~~~ 216 (221)
T KOG3223|consen 166 KRMRAAFKAFEEARLPRLKKENPG-LRLSQYKQLLKKEWQKSPDN---PFNQAAV 216 (221)
T ss_pred HHHHHHHHHHHHhhchhhhhcCCC-ccHHHHHHHHHHHHhhCCCC---hhhHHhh
Confidence 455678999999999999999999 69999999999999988876 6665543
No 27
>PF12881 NUT_N: NUT protein N terminus; InterPro: IPR024309 This domain is found in the N-terminal region of Nuclear Testis (NUT) proteins. It is also found in FAM22, which are a family of uncharacterised mammalian proteins.
Probab=85.96 E-value=3.2 Score=32.00 Aligned_cols=54 Identities=19% Similarity=0.201 Sum_probs=44.4
Q ss_pred CCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCChhhhhHHHHHHHHHH
Q 033714 42 ASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRK 96 (113)
Q Consensus 42 ~say~lF~~~~r~~~~~~~p~~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k 96 (113)
..|+-+|..-....+....|.+ +..|-....-+.|...|.-+|-.|.++|++-.
T Consensus 229 ~EAlSCFLIpvLrsLar~kPtM-tlEeGl~ra~qEW~~~SnfdRmifyemaekFm 282 (328)
T PF12881_consen 229 AEALSCFLIPVLRSLARLKPTM-TLEEGLWRAVQEWQHTSNFDRMIFYEMAEKFM 282 (328)
T ss_pred hhhhhhhHHHHHHHHHhcCCCc-cHHHHHHHHHHHhhccccccHHHHHHHHHHHc
Confidence 4566666666666677777884 88999999999999999999999999999753
No 28
>PF05494 Tol_Tol_Ttg2: Toluene tolerance, Ttg2 ; InterPro: IPR008869 Toluene tolerance is mediated by increased cell membrane rigidity resulting from changes in fatty acid and phospholipid compositions, exclusion of toluene from the cell membrane, and removal of intracellular toluene by degradation []. Many proteins are involved in these processes. This family is a transporter which shows similarity to ABC transporters [].; PDB: 2QGU_A.
Probab=85.16 E-value=1.5 Score=30.27 Aligned_cols=45 Identities=18% Similarity=0.372 Sum_probs=32.4
Q ss_pred CCHHHHHH-HHHhhhcCCChhhhhHHHHHHHHH-HHHHHHHHHHHHH
Q 033714 64 KSVAAVGK-AGGEKWKSMSEADKAPYVAKAEKR-KVEYEKDMKNYNR 108 (113)
Q Consensus 64 ~~~~eisk-~l~~~Wk~ls~~eK~~y~~~a~~~-k~~y~~~~~~y~~ 108 (113)
.++..|++ .||..|+.||+++++.|.+..... ...|-..+..|..
T Consensus 38 ~D~~~~ar~~LG~~w~~~s~~q~~~F~~~f~~~l~~~Y~~~l~~y~~ 84 (170)
T PF05494_consen 38 FDFERMARRVLGRYWRKASPAQRQRFVEAFKQLLVRTYAKRLDEYSG 84 (170)
T ss_dssp B-HHHHHHHHHGGGTTTS-HHHHHHHHHHHHHHHHHHHHHHHHT-SS
T ss_pred CCHHHHHHHHHHHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 46666665 467899999999999999988774 5667777777653
No 29
>PF13875 DUF4202: Domain of unknown function (DUF4202)
Probab=76.80 E-value=6 Score=28.27 Aligned_cols=39 Identities=26% Similarity=0.477 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCChhhhh
Q 033714 44 AFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKA 86 (113)
Q Consensus 44 ay~lF~~~~r~~~~~~~p~~~~~~eisk~l~~~Wk~ls~~eK~ 86 (113)
+-++|...+.+.+...| +...+..+|...|+.||+.-++
T Consensus 131 acLVFL~~~f~~F~~~~----deeK~v~Il~KTw~KMS~~g~~ 169 (185)
T PF13875_consen 131 ACLVFLEYYFEDFAAKH----DEEKIVDILRKTWRKMSERGHE 169 (185)
T ss_pred HHHHhHHHHHHHHHhcC----CHHHHHHHHHHHHHHCCHHHHH
Confidence 57889999999998877 3457889999999999998775
No 30
>PF11304 DUF3106: Protein of unknown function (DUF3106); InterPro: IPR021455 Some members in this family of proteins are annotated as transmembrane proteins however this cannot be confirmed. Currently no function is known.
Probab=76.80 E-value=12 Score=24.14 Aligned_cols=25 Identities=16% Similarity=0.349 Sum_probs=12.7
Q ss_pred HHHHHHHhhhcCCChhhhhHHHHHH
Q 033714 68 AVGKAGGEKWKSMSEADKAPYVAKA 92 (113)
Q Consensus 68 eisk~l~~~Wk~ls~~eK~~y~~~a 92 (113)
++..-+...|+.|+++.+..+...|
T Consensus 11 ~~L~pl~~~W~~l~~~qr~k~l~~a 35 (107)
T PF11304_consen 11 QALAPLAERWNSLPPEQRRKWLQIA 35 (107)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3444455555555555555544444
No 31
>COG2854 Ttg2D ABC-type transport system involved in resistance to organic solvents, auxiliary component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=71.53 E-value=6.1 Score=28.64 Aligned_cols=40 Identities=13% Similarity=0.271 Sum_probs=33.5
Q ss_pred HHHHHhhhcCCChhhhhHHHHHHHHH-HHHHHHHHHHHHHh
Q 033714 70 GKAGGEKWKSMSEADKAPYVAKAEKR-KVEYEKDMKNYNRR 109 (113)
Q Consensus 70 sk~l~~~Wk~ls~~eK~~y~~~a~~~-k~~y~~~~~~y~~~ 109 (113)
...||.-|+.+|+++++.|.+..... ...|-..+.+|+.+
T Consensus 77 ~~vLGk~~k~aspeQ~~~F~~aF~~yl~q~Y~~aL~~Y~~q 117 (202)
T COG2854 77 KLVLGKYYKTASPEQRQAFFKAFRTYLEQTYGQALLDYKGQ 117 (202)
T ss_pred HHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 34578999999999999999988874 67788999888754
No 32
>PF01352 KRAB: KRAB box; InterPro: IPR001909 The Krueppel-associated box (KRAB) is a domain of around 75 amino acids that is found in the N-terminal part of about one third of eukaryotic Krueppel-type C2H2 zinc finger proteins (ZFPs) []. It is enriched in charged amino acids and can be divided into subregions A and B, which are predicted to fold into two amphipathic alpha-helices. The KRAB A and B boxes can be separated by variable spacer segments and many KRAB proteins contain only the A box []. The functions currently known for members of the KRAB-containing protein family include transcriptional repression of RNA polymerase I, II, and III promoters, binding and splicing of RNA, and control of nucleolus function. The KRAB domain functions as a transcriptional repressor when tethered to the template DNA by a DNA-binding domain. A sequence of 45 amino acids in the KRAB A subdomain has been shown to be necessary and sufficient for transcriptional repression. The B box does not repress by itself but does potentiate the repression exerted by the KRAB A subdomain [, ]. Gene silencing requires the binding of the KRAB domain to the RING-B box-coiled coil (RBCC) domain of the KAP-1/TIF1-beta corepressor. As KAP-1 binds to the heterochromatin proteins HP1, it has been proposed that the KRAB-ZFP-bound target gene could be silenced following recruitment to heterochromatin [, ]. KRAB-ZFPs probably constitute the single largest class of transcription factors within the human genome []. Although the function of KRAB-ZFPs is largely unknown, they appear to play important roles during cell differentiation and development. The KRAB domain is generally encoded by two exons. The regions coded by the two exons are known as KRAB-A and KRAB-B.; GO: 0003676 nucleic acid binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1V65_A.
Probab=63.62 E-value=4.9 Score=21.52 Aligned_cols=29 Identities=21% Similarity=0.247 Sum_probs=16.7
Q ss_pred HHHHHHHHH-hhhcCCChhhhhHHHHHHHH
Q 033714 66 VAAVGKAGG-EKWKSMSEADKAPYVAKAEK 94 (113)
Q Consensus 66 ~~eisk~l~-~~Wk~ls~~eK~~y~~~a~~ 94 (113)
+.+|+--++ +.|..|.+.+|.-|.+.-.+
T Consensus 3 f~Dvav~fs~eEW~~L~~~Qk~ly~dvm~E 32 (41)
T PF01352_consen 3 FEDVAVYFSQEEWELLDPAQKNLYRDVMLE 32 (41)
T ss_dssp ----TT---HHHHHTS-HHHHHHHHHHHHH
T ss_pred EEEEEEEcChhhcccccceecccchhHHHH
Confidence 445554444 56999999999999876543
No 33
>PRK09706 transcriptional repressor DicA; Reviewed
Probab=60.87 E-value=28 Score=22.89 Aligned_cols=42 Identities=12% Similarity=0.169 Sum_probs=36.7
Q ss_pred HHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 033714 68 AVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 109 (113)
Q Consensus 68 eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y~~~ 109 (113)
+-...|-..|+.|+++++...........+.|..-+++|-..
T Consensus 87 ~~~~~ll~~~~~L~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 128 (135)
T PRK09706 87 EDQKELLELFDALPESEQDAQLSEMRARVENFNKLFEELLKA 128 (135)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345778999999999999999999999999999998888664
No 34
>PF06945 DUF1289: Protein of unknown function (DUF1289); InterPro: IPR010710 This family consists of a number of hypothetical bacterial proteins. The aligned region spans around 56 residues and contains 4 highly conserved cysteine residues towards the N terminus. The function of this family is unknown.
Probab=59.03 E-value=14 Score=20.61 Aligned_cols=25 Identities=24% Similarity=0.590 Sum_probs=18.5
Q ss_pred CHHHHHHHHHhhhcCCChhhhhHHHHHHHH
Q 033714 65 SVAAVGKAGGEKWKSMSEADKAPYVAKAEK 94 (113)
Q Consensus 65 ~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~ 94 (113)
+..||.. |..|++++|.........
T Consensus 23 T~dEI~~-----W~~~s~~er~~i~~~l~~ 47 (51)
T PF06945_consen 23 TLDEIRD-----WKSMSDDERRAILARLRA 47 (51)
T ss_pred cHHHHHH-----HhhCCHHHHHHHHHHHHH
Confidence 5667765 999999998776655443
No 35
>PRK12750 cpxP periplasmic repressor CpxP; Reviewed
Probab=58.10 E-value=27 Score=24.41 Aligned_cols=34 Identities=15% Similarity=0.176 Sum_probs=27.9
Q ss_pred HHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHH
Q 033714 70 GKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDM 103 (113)
Q Consensus 70 sk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~ 103 (113)
.+...+++..|++++|..|.+...+-.+.+.+.+
T Consensus 127 ~~~~~~~~~vLTpEQRak~~e~~~~r~~~~~~~~ 160 (170)
T PRK12750 127 LEKRHQMLSILTPEQKAKFQELQQERMQECQDKM 160 (170)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445568999999999999999888888887766
No 36
>PRK12751 cpxP periplasmic stress adaptor protein CpxP; Reviewed
Probab=57.77 E-value=24 Score=24.59 Aligned_cols=33 Identities=12% Similarity=0.228 Sum_probs=24.9
Q ss_pred HHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHH
Q 033714 68 AVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYE 100 (113)
Q Consensus 68 eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~ 100 (113)
+..+...+++..|++++|..|.+..++-..+..
T Consensus 118 ~~~~~~~qmy~lLTPEQra~l~~~~e~r~~~~~ 150 (162)
T PRK12751 118 EMAKVRNQMYNLLTPEQKEALNKKHQERIEKLQ 150 (162)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 344555678899999999999988777655543
No 37
>PF00887 ACBP: Acyl CoA binding protein; InterPro: IPR000582 Acyl-CoA-binding protein (ACBP) is a small (10 Kd) protein that binds medium- and long-chain acyl-CoA esters with very high affinity and may function as an intracellular carrier of acyl-CoA esters []. ACBP is also known as diazepam binding inhibitor (DBI) or endozepine (EP) because of its ability to displace diazepam from the benzodiazepine (BZD) recognition site located on the GABA type A receptor. It is therefore possible that this protein also acts as a neuropeptide to modulate the action of the GABA receptor []. ACBP is a highly conserved protein of about 90 residues that is found in all four eukaryotic kingdoms, Animalia, Plantae, Fungi and Protista, and in some eubacterial species []. Although ACBP occurs as a completely independent protein, intact ACB domains have been identified in a number of large, multifunctional proteins in a variety of eukaryotic species. These include large membrane-associated proteins with N-terminal ACB domains, multifunctional enzymes with both ACB and peroxisomal enoyl-CoA Delta(3), Delta(2)-enoyl-CoA isomerase domains, and proteins with both an ACB domain and ankyrin repeats (IPR002110 from INTERPRO) []. The ACB domain consists of four alpha-helices arranged in a bowl shape with a highly exposed acyl-CoA-binding site. The ligand is bound through specific interactions with residues on the protein, most notably several conserved positive charges that interact with the phosphate group on the adenosine-3'phosphate moiety, and the acyl chain is sandwiched between the hydrophobic surfaces of CoA and the protein []. Other proteins containing an ACB domain include: Endozepine-like peptide (ELP) (gene DBIL5) from mouse []. ELP is a testis-specific ACBP homologue that may be involved in the energy metabolism of the mature sperm. MA-DBI, a transmembrane protein of unknown function which has been found in mammals. MA-DBI contains a N-terminal ACB domain. DRS-1 [], a human protein of unknown function that contains a N-terminal ACB domain and a C-terminal enoyl-CoA isomerase/hydratase domain. ; GO: 0000062 fatty-acyl-CoA binding; PDB: 2CB8_A 2FJ9_A 2LBB_A 1ST7_A 3EPY_B 2FDQ_C 1NTI_A 1HB8_A 1ACA_A 1NVL_A ....
Probab=56.61 E-value=40 Score=20.53 Aligned_cols=53 Identities=17% Similarity=0.378 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCC----hhhhhHHHHHHHHHHHHH
Q 033714 45 FFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS----EADKAPYVAKAEKRKVEY 99 (113)
Q Consensus 45 y~lF~~~~r~~~~~~~p~~~~~~eisk~l~~~Wk~ls----~~eK~~y~~~a~~~k~~y 99 (113)
|.||.+.....+....|+..++. .+.--+.|+.|. ++-+..|++...+....|
T Consensus 30 YalyKQAt~Gd~~~~~P~~~d~~--~~~K~~AW~~l~gms~~eA~~~Yi~~v~~~~~~~ 86 (87)
T PF00887_consen 30 YALYKQATHGDCDTPRPGFFDIE--GRAKWDAWKALKGMSKEEAMREYIELVEELIPKY 86 (87)
T ss_dssp HHHHHHHHTSS--S-CTTTTCHH--HHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcCCCCcchhHH--HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhc
Confidence 77777777666666667643333 344456798775 444556666666655544
No 38
>TIGR00787 dctP tripartite ATP-independent periplasmic transporter solute receptor, DctP family. TRAP-T (Tripartite ATP-independent Periplasmic Transporter) family proteins generally consist of three components, and these systems have so far been found in Gram-negative bacteria, Gram-postive bacteria and archaea. The best characterized example is the DctPQM system of Rhodobacter capsulatus, a C4 dicarboxylate (malate, fumarate, succinate) transporter. This model represents the DctP family, one of at least three major families of extracytoplasmic solute receptor for TRAP family transporters. Other are the SnoM family (see pfam03480) and TAXI (TRAP-associated extracytoplasmic immunogenic) family.
Probab=54.06 E-value=31 Score=25.04 Aligned_cols=29 Identities=21% Similarity=0.105 Sum_probs=22.2
Q ss_pred HhhhcCCChhhhhHHHHHHHHHHHHHHHH
Q 033714 74 GEKWKSMSEADKAPYVAKAEKRKVEYEKD 102 (113)
Q Consensus 74 ~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~ 102 (113)
...|..||++.|+...+.+.+.-......
T Consensus 213 ~~~~~~L~~e~q~~i~~a~~~~~~~~~~~ 241 (257)
T TIGR00787 213 KAFWKSLPPDLQAVVKEAAKEAGEYQRKL 241 (257)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 47799999999999988777765444443
No 39
>PRK10236 hypothetical protein; Provisional
Probab=53.38 E-value=12 Score=27.70 Aligned_cols=27 Identities=19% Similarity=0.390 Sum_probs=21.7
Q ss_pred HHHHHHHhhhcCCChhhhhHHHHHHHH
Q 033714 68 AVGKAGGEKWKSMSEADKAPYVAKAEK 94 (113)
Q Consensus 68 eisk~l~~~Wk~ls~~eK~~y~~~a~~ 94 (113)
=+.+.+...|..||++|++.+.+.-..
T Consensus 117 il~kll~~a~~kms~eE~~~L~~~l~~ 143 (237)
T PRK10236 117 LLEQFLRNTWKKMDEEHKQEFLHAVDA 143 (237)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHhh
Confidence 357888999999999999888765443
No 40
>COG1638 DctP TRAP-type C4-dicarboxylate transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=53.23 E-value=32 Score=26.54 Aligned_cols=35 Identities=20% Similarity=0.312 Sum_probs=28.4
Q ss_pred HhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 033714 74 GEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 108 (113)
Q Consensus 74 ~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y~~ 108 (113)
...|..||+++++...+.|.+......+...+.+.
T Consensus 244 ~~~w~~L~~e~q~il~~aa~e~~~~~~~~~~~~e~ 278 (332)
T COG1638 244 KAFWDSLPEEDQTILLEAAKEAAEEQRKLVEELED 278 (332)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999998887766666665554
No 41
>KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]
Probab=49.12 E-value=45 Score=25.91 Aligned_cols=51 Identities=16% Similarity=0.238 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHh-------CCCC-----CCHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHH
Q 033714 47 VFMEEFREQYKKD-------HPKN-----KSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKV 97 (113)
Q Consensus 47 lF~~~~r~~~~~~-------~p~~-----~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~ 97 (113)
.|+..-|.++..- .|+. .....+.+.+.++|..|+++.++.|-+.+-.+..
T Consensus 187 af~D~lR~EL~~fGV~VsiiePG~f~T~l~~~~~~~~~~~~~w~~l~~e~k~~YGedy~~~~~ 249 (322)
T KOG1610|consen 187 AFSDSLRRELRPFGVKVSIIEPGFFKTNLANPEKLEKRMKEIWERLPQETKDEYGEDYFEDYK 249 (322)
T ss_pred HHHHHHHHHHHhcCcEEEEeccCccccccCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 4777777776532 1332 2457889999999999999999999887765533
No 42
>PRK10363 cpxP periplasmic repressor CpxP; Reviewed
Probab=48.89 E-value=43 Score=23.54 Aligned_cols=35 Identities=11% Similarity=0.231 Sum_probs=27.6
Q ss_pred HHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHH
Q 033714 67 AAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEK 101 (113)
Q Consensus 67 ~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~ 101 (113)
.+..++-.++++-|++|+|..|.+..++-..++..
T Consensus 111 Vem~k~~nqmy~lLTPEQKaq~~~~~~~rm~~~~~ 145 (166)
T PRK10363 111 VEMAKVRNQMYRLLTPEQQAVLNEKHQQRMEQLRD 145 (166)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 35666777999999999999998887776666643
No 43
>PF12650 DUF3784: Domain of unknown function (DUF3784); InterPro: IPR017259 This group represents an uncharacterised conserved protein.
Probab=47.20 E-value=13 Score=23.14 Aligned_cols=16 Identities=31% Similarity=0.542 Sum_probs=13.3
Q ss_pred hhcCCChhhhhHHHHH
Q 033714 76 KWKSMSEADKAPYVAK 91 (113)
Q Consensus 76 ~Wk~ls~~eK~~y~~~ 91 (113)
=|+.||+|||+.|.+.
T Consensus 25 Gyntms~eEk~~~D~~ 40 (97)
T PF12650_consen 25 GYNTMSKEEKEKYDKK 40 (97)
T ss_pred hcccCCHHHHHHhhHH
Confidence 3899999999999653
No 44
>cd07081 ALDH_F20_ACDH_EutE-like Coenzyme A acylating aldehyde dehydrogenase (ACDH), Ethanolamine utilization protein EutE, and related proteins. Coenzyme A acylating aldehyde dehydrogenase (ACDH), an NAD+ and CoA-dependent acetaldehyde dehydrogenase, acetylating (EC=1.2.1.10), functions as a single enzyme (such as the Ethanolamine utilization protein, EutE, in Salmonella typhimurium) or as part of a multifunctional enzyme to convert acetaldehyde into acetyl-CoA. The E. coli aldehyde-alcohol dehydrogenase includes the functional domains, alcohol dehydrogenase (ADH), ACDH, and pyruvate-formate-lyase deactivase; and the Entamoeba histolytica aldehyde-alcohol dehydrogenase 2 (ALDH20A1) includes the functional domains ADH and ACDH, and may be critical enzymes in the fermentative pathway.
Probab=46.10 E-value=52 Score=26.37 Aligned_cols=40 Identities=13% Similarity=0.057 Sum_probs=32.9
Q ss_pred HHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHH
Q 033714 68 AVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 107 (113)
Q Consensus 68 eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y~ 107 (113)
+.++..-..|..++.++|..+...+....+++.+++....
T Consensus 6 ~~A~~A~~~W~~~~~~~R~~iL~~~a~~l~~~~~ela~~~ 45 (439)
T cd07081 6 AAAKVAQQGLSCKSQEMVDLIFRAAAEAAEDARIDLAKLA 45 (439)
T ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566789999999999999999999888888887653
No 45
>PF03480 SBP_bac_7: Bacterial extracellular solute-binding protein, family 7; InterPro: IPR018389 This family of proteins are involved in binding extracellular solutes for transport across the bacterial cytoplasmic membrane. This family includes a C4-dicarboxylate-binding protein DctP [, ] and the sialic acid-binding protein SiaP. The structure of the SiaP receptor has revealed an overall topology similar to ATP binding cassette ESR (extracytoplasmic solute receptors) proteins []. Upon binding of sialic acid, SiaP undergoes domain closure about a hinge region and kinking of an alpha-helix hinge component [].; GO: 0006810 transport, 0030288 outer membrane-bounded periplasmic space; PDB: 2HZK_C 2HZL_B 2HPG_C 2XWI_A 2XWK_A 2WX9_A 2CEY_A 2WYP_A 3B50_A 2CEX_B ....
Probab=44.54 E-value=39 Score=24.84 Aligned_cols=32 Identities=13% Similarity=0.299 Sum_probs=22.5
Q ss_pred HhhhcCCChhhhhHHHHHHHHHHHHHHHHHHH
Q 033714 74 GEKWKSMSEADKAPYVAKAEKRKVEYEKDMKN 105 (113)
Q Consensus 74 ~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~ 105 (113)
.+.|..||++.|+...+.+.+....+...+.+
T Consensus 213 ~~~w~~L~~e~q~~l~~~~~~~~~~~~~~~~~ 244 (286)
T PF03480_consen 213 KDWWDSLPDEDQEALDDAADEAEARAREYYEA 244 (286)
T ss_dssp HHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36799999999999998887765554444433
No 46
>KOG4715 consensus SWI/SNF-related matrix-associated actin-dependent regulator of chromatin [Chromatin structure and dynamics]
Probab=44.31 E-value=50 Score=25.85 Aligned_cols=74 Identities=22% Similarity=0.434 Sum_probs=47.9
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHH----HHHHHHHHH
Q 033714 31 AAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKV----EYEKDMKNY 106 (113)
Q Consensus 31 ~~~d~~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~----~y~~~~~~y 106 (113)
...-|.+|+.|--+.+-|+.-.|.-+-.- .+ ++.|+ ..|. +-.-.=..|.++...++. +|+.+..+|
T Consensus 55 ~~t~pkpPkppekpl~pymrySrkvWd~V--kA-~nPe~-----kLWe-iGK~Ig~mW~dLpd~EK~ey~~EYeaEKieY 125 (410)
T KOG4715|consen 55 SITRPKPPKPPEKPLMPYMRYSRKVWDQV--KA-SNPEL-----KLWE-IGKIIGGMWLDLPDEEKQEYLNEYEAEKIEY 125 (410)
T ss_pred cccCCCCCCCCCcccchhhHHhhhhhhhh--hc-cCcch-----HHHH-HHHHHHHHHhhCcchHHHHHHHHHHHHHHHH
Confidence 36778899999999999998888766321 11 23332 2232 111123358888877766 455666789
Q ss_pred HHhhhcC
Q 033714 107 NRRQVIY 113 (113)
Q Consensus 107 ~~~~~~~ 113 (113)
++.|++|
T Consensus 126 ~~smkay 132 (410)
T KOG4715|consen 126 NESMKAY 132 (410)
T ss_pred HHHHHHh
Confidence 9999876
No 47
>cd00225 API3 Ascaris pepsin inhibitor-3 (API3); protein inhibitor that reversibly inhibits aspartic proteinase cathepsin E, and gastric enzymes pepsin and gastricsin.
Probab=39.56 E-value=42 Score=23.28 Aligned_cols=14 Identities=7% Similarity=0.271 Sum_probs=10.1
Q ss_pred HhhhcCCChhhhhH
Q 033714 74 GEKWKSMSEADKAP 87 (113)
Q Consensus 74 ~~~Wk~ls~~eK~~ 87 (113)
|-.|+.|+.+|...
T Consensus 25 g~~lReLt~~Eq~e 38 (159)
T cd00225 25 GFPLRELTPDEQQE 38 (159)
T ss_pred CceeeeCCHHHHHH
Confidence 34689999988543
No 48
>cd07132 ALDH_F3AB Aldehyde dehydrogenase family 3 members A1, A2, and B1 and related proteins. NAD(P)+-dependent, aldehyde dehydrogenase, family 3 members A1 and B1 (ALDH3A1, ALDH3B1, EC=1.2.1.5) and fatty aldehyde dehydrogenase, family 3 member A2 (ALDH3A2, EC=1.2.1.3), and similar sequences are included in this CD. Human ALDH3A1 is a homodimer with a critical role in cellular defense against oxidative stress; it catalyzes the oxidation of various cellular membrane lipid-derived aldehydes. Corneal crystalline ALDH3A1 protects the cornea and underlying lens against UV-induced oxidative stress. Human ALDH3A2, a microsomal homodimer, catalyzes the oxidation of long-chain aliphatic aldehydes to fatty acids. Human ALDH3B1 is highly expressed in the kidney and liver and catalyzes the oxidation of various medium- and long-chain saturated and unsaturated aliphatic aldehydes.
Probab=39.23 E-value=83 Score=25.05 Aligned_cols=40 Identities=8% Similarity=-0.095 Sum_probs=32.3
Q ss_pred HHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHH
Q 033714 68 AVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 107 (113)
Q Consensus 68 eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y~ 107 (113)
+.++..-..|..++..+|..+...+....+.+.+++.+-.
T Consensus 5 ~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~ 44 (443)
T cd07132 5 RRAREAFSSGKTRPLEFRIQQLEALLRMLEENEDEIVEAL 44 (443)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4455666789999999999999998888888888776643
No 49
>cd07122 ALDH_F20_ACDH Coenzyme A acylating aldehyde dehydrogenase (ACDH), ALDH family 20-like. Coenzyme A acylating aldehyde dehydrogenase (ACDH, EC=1.2.1.10), an NAD+ and CoA-dependent acetaldehyde dehydrogenase, functions as a single enzyme (such as the Ethanolamine utilization protein, EutE, in Salmonella typhimurium) or as part of a multifunctional enzyme to convert acetaldehyde into acetyl-CoA . The E. coli aldehyde-alcohol dehydrogenase includes the functional domains, alcohol dehydrogenase (ADH), ACDH, and pyruvate-formate-lyase deactivase; and the Entamoeba histolytica aldehyde-alcohol dehydrogenase 2 (ALDH20A1) includes the functional domains ADH and ACDH and may be critical enzymes in the fermentative pathway.
Probab=37.45 E-value=87 Score=25.08 Aligned_cols=40 Identities=5% Similarity=0.131 Sum_probs=32.4
Q ss_pred HHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHH
Q 033714 68 AVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 107 (113)
Q Consensus 68 eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y~ 107 (113)
+.++..-..|..++.++|..+...+....+++.+++....
T Consensus 6 ~~A~~A~~~W~~~~~~eR~~~L~~~a~~l~~~~eela~~~ 45 (436)
T cd07122 6 ERARKAQREFATFSQEQVDKIVEAVAWAAADAAEELAKMA 45 (436)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556679999999999999999988888888887654
No 50
>cd07133 ALDH_CALDH_CalB Coniferyl aldehyde dehydrogenase-like. Coniferyl aldehyde dehydrogenase (CALDH, EC=1.2.1.68) of Pseudomonas sp. strain HR199 (CalB) which catalyzes the NAD+-dependent oxidation of coniferyl aldehyde to ferulic acid, and similar sequences, are present in this CD.
Probab=37.09 E-value=1e+02 Score=24.43 Aligned_cols=39 Identities=8% Similarity=-0.033 Sum_probs=31.7
Q ss_pred HHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 033714 68 AVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106 (113)
Q Consensus 68 eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y 106 (113)
+.++..-..|..++..+|..+...+....+.+..++.+-
T Consensus 5 ~~a~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~ 43 (434)
T cd07133 5 ERQKAAFLANPPPSLEERRDRLDRLKALLLDNQDALAEA 43 (434)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566678999999999999998888888888877764
No 51
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=36.36 E-value=2.4 Score=35.63 Aligned_cols=44 Identities=16% Similarity=0.272 Sum_probs=39.7
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCChhhh
Q 033714 41 PASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADK 85 (113)
Q Consensus 41 P~say~lF~~~~r~~~~~~~p~~~~~~eisk~l~~~Wk~ls~~eK 85 (113)
-+.+|++|+.+.+..+...+|++ .+++++.+.|..|..|+...+
T Consensus 552 ~~~~~~~~s~~~~~~~~~~np~v-~~~~~~~~vg~~~~~lp~~~k 595 (629)
T KOG1827|consen 552 SPEPYILDSIENRTIIWFENPTV-GFGEVSIIVGNDWDKLPNINK 595 (629)
T ss_pred CCccccccccccCceeeeeCCCc-ccceeEEeecCCcccCccccc
Confidence 56789999999999999999995 999999999999999995544
No 52
>PF05388 Carbpep_Y_N: Carboxypeptidase Y pro-peptide; InterPro: IPR008442 This signature is found at the N terminus of carboxypeptidase Y, which belong to MEROPS peptidase family S10. This region contains the signal peptide and pro-peptide regions [,].; GO: 0004185 serine-type carboxypeptidase activity, 0005773 vacuole
Probab=36.02 E-value=62 Score=21.19 Aligned_cols=29 Identities=21% Similarity=0.132 Sum_probs=25.1
Q ss_pred HHHHHHHHHhhhcCCChhhhhHHHHHHHH
Q 033714 66 VAAVGKAGGEKWKSMSEADKAPYVAKAEK 94 (113)
Q Consensus 66 ~~eisk~l~~~Wk~ls~~eK~~y~~~a~~ 94 (113)
...+++.+++..+.|+.+-|+.|.++...
T Consensus 45 ~~~~~~~l~e~l~~Lt~e~k~~W~E~~~~ 73 (113)
T PF05388_consen 45 LEKISKYLNEPLKSLTSEAKALWDEMMLL 73 (113)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 55677888999999999999999998765
No 53
>PF09791 Oxidored-like: Oxidoreductase-like protein, N-terminal; InterPro: IPR019180 This entry represents the N-terminal domain of various oxidoreductase-like proteins whose exact function is, as yet, unknown.
Probab=35.62 E-value=65 Score=17.86 Aligned_cols=18 Identities=11% Similarity=0.255 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 033714 91 KAEKRKVEYEKDMKNYNR 108 (113)
Q Consensus 91 ~a~~~k~~y~~~~~~y~~ 108 (113)
.+.++.++|...++++++
T Consensus 30 ~Y~eel~~y~~~~~~~~~ 47 (48)
T PF09791_consen 30 VYAEELEEYREALAAWQE 47 (48)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 344444555555555443
No 54
>cd07087 ALDH_F3-13-14_CALDH-like ALDH subfamily: Coniferyl aldehyde dehydrogenase, ALDH families 3, 13, and 14, and other related proteins. ALDH subfamily which includes NAD(P)+-dependent, aldehyde dehydrogenase, family 3 member A1 and B1 (ALDH3A1, ALDH3B1, EC=1.2.1.5) and fatty aldehyde dehydrogenase, family 3 member A2 (ALDH3A2, EC=1.2.1.3), and also plant ALDH family members ALDH3F1, ALDH3H1, and ALDH3I1, fungal ALDH14 (YMR110C) and the protozoan family 13 member (ALDH13), as well as coniferyl aldehyde dehydrogenases (CALDH, EC=1.2.1.68), and other similar sequences, such as the Pseudomonas putida benzaldehyde dehydrogenase I that is involved in the metabolism of mandelate.
Probab=34.55 E-value=1.1e+02 Score=24.13 Aligned_cols=40 Identities=13% Similarity=-0.080 Sum_probs=31.6
Q ss_pred HHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHH
Q 033714 68 AVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 107 (113)
Q Consensus 68 eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y~ 107 (113)
+.++..-..|..++..+|..+...+....+++..++.+-.
T Consensus 5 ~~a~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~ 44 (426)
T cd07087 5 ARLRETFLTGKTRSLEWRKAQLKALKRMLTENEEEIAAAL 44 (426)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3445556779999999999999988888888887776543
No 55
>cd07085 ALDH_F6_MMSDH Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2. Methylmalonate semialdehyde dehydrogenase (MMSDH, EC=1.2.1.27) [acylating] from Bacillus subtilis is involved in valine metabolism and catalyses the NAD+- and CoA-dependent oxidation of methylmalonate semialdehyde into propionyl-CoA. Mitochondrial human MMSDH ALDH6A1 and Arabidopsis MMSDH ALDH6B2 are also present in this CD.
Probab=33.44 E-value=1.1e+02 Score=24.44 Aligned_cols=36 Identities=14% Similarity=0.146 Sum_probs=28.7
Q ss_pred HHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHH
Q 033714 70 GKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKN 105 (113)
Q Consensus 70 sk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~ 105 (113)
++.....|..++.++|..+...+....+++..++..
T Consensus 47 A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~ 82 (478)
T cd07085 47 AKAAFPAWSATPVLKRQQVMFKFRQLLEENLDELAR 82 (478)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456799999999999999888888887777665
No 56
>PF09164 VitD-bind_III: Vitamin D binding protein, domain III; InterPro: IPR015247 This domain is predominantly found in Vitamin D binding proteins, and adopts a multihelical structure. It is required for formation of an actin 'clamp', allowing the protein to bind to actin []. ; PDB: 1MA9_A 1KW2_A 1KXP_D 1J7E_A 1J78_A 1LOT_A.
Probab=32.46 E-value=1.1e+02 Score=18.20 Aligned_cols=33 Identities=9% Similarity=0.261 Sum_probs=23.7
Q ss_pred CHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhh
Q 033714 43 SAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEK 76 (113)
Q Consensus 43 say~lF~~~~r~~~~~~~p~~~~~~eisk~l~~~ 76 (113)
+.|.=|-+.-.+.++...|++ +..++..++.++
T Consensus 9 ~tFtEyKKrL~e~l~~k~P~a-t~~~l~~lve~R 41 (68)
T PF09164_consen 9 NTFTEYKKRLAERLRAKLPDA-TPTELKELVEKR 41 (68)
T ss_dssp S-HHHHHHHHHHHHHHH-TTS--HHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHH
Confidence 567788888888999999995 888887776543
No 57
>PF02026 RyR: RyR domain; InterPro: IPR003032 This domain is called RyR for Ryanodine receptor []. The domain is found in four copies in the ryanodine receptor. The function of this domain is unknown.; PDB: 4ETV_A 3RQR_A 4ETT_A 4ERT_A 4ESU_A 4ETU_A 4ERV_A 3NRT_E.
Probab=31.20 E-value=42 Score=21.11 Aligned_cols=19 Identities=16% Similarity=0.242 Sum_probs=15.0
Q ss_pred hcCCChhhhhHHHHHHHHH
Q 033714 77 WKSMSEADKAPYVAKAEKR 95 (113)
Q Consensus 77 Wk~ls~~eK~~y~~~a~~~ 95 (113)
|..|++++|..+.+.+.+.
T Consensus 61 y~~L~e~eK~~dr~~~~e~ 79 (94)
T PF02026_consen 61 YDELSEEEKEKDRDMVRET 79 (94)
T ss_dssp GGGS-HHHHHHHHHHHHHH
T ss_pred hhhCCHHHHHHhHHHHHHH
Confidence 8889999998888887764
No 58
>cd07150 ALDH_VaniDH_like Pseudomonas putida vanillin dehydrogenase-like. Vanillin dehydrogenase (Vdh, VaniDH) involved in the metabolism of ferulic acid and other related sequences are included in this CD. The E. coli vanillin dehydrogenase (LigV) preferred NAD+ to NADP+ and exhibited a broad substrate preference, including vanillin, benzaldehyde, protocatechualdehyde, m-anisaldehyde, and p-hydroxybenzaldehyde.
Probab=30.98 E-value=1.2e+02 Score=23.85 Aligned_cols=36 Identities=11% Similarity=0.197 Sum_probs=28.6
Q ss_pred HHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHH
Q 033714 70 GKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKN 105 (113)
Q Consensus 70 sk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~ 105 (113)
++.....|..++.++|..+...+....+.+.+++.+
T Consensus 30 A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~ 65 (451)
T cd07150 30 AYDAFPAWAATTPSERERILLKAAEIMERRADDLID 65 (451)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 344456799999999999998888888888777654
No 59
>cd07152 ALDH_BenzADH NAD-dependent benzaldehyde dehydrogenase II-like. NAD-dependent, benzaldehyde dehydrogenase II (XylC, BenzADH, EC=1.2.1.28) is involved in the oxidation of benzyl alcohol to benzoate. In Acinetobacter calcoaceticus, this process is carried out by the chromosomally encoded, benzyl alcohol dehydrogenase (xylB) and benzaldehyde dehydrogenase II (xylC) enzymes; whereas in Pseudomonas putida they are encoded by TOL plasmids.
Probab=30.36 E-value=1.4e+02 Score=23.65 Aligned_cols=37 Identities=14% Similarity=0.328 Sum_probs=29.6
Q ss_pred HHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 033714 70 GKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106 (113)
Q Consensus 70 sk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y 106 (113)
++..-..|..++.++|..+...+......+..++.+.
T Consensus 22 A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 58 (443)
T cd07152 22 AAAAQRAWAATPPRERAAVLRRAADLLEEHADEIADW 58 (443)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4445568999999999999988888888887777653
No 60
>PF06696 Strep_SA_rep: Streptococcal surface antigen repeat; InterPro: IPR009578 This family consists of a number of ~25 residue long repeats found commonly in Streptococcal surface antigens although one copy is present in the HPSR2-heavy chain potential motor protein of Giardia lamblia (Giardia intestinalis) (Q24984 from SWISSPROT). This family is often found in conjunction with IPR001899 from INTERPRO.; PDB: 3IOX_A 3IPK_A 2WD6_B 1JMM_A.
Probab=30.29 E-value=46 Score=15.96 Aligned_cols=13 Identities=8% Similarity=0.424 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHH
Q 033714 96 KVEYEKDMKNYNR 108 (113)
Q Consensus 96 k~~y~~~~~~y~~ 108 (113)
...|+.++..+..
T Consensus 7 la~YqaeLa~vqk 19 (25)
T PF06696_consen 7 LAQYQAELARVQK 19 (25)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 61
>PRK13252 betaine aldehyde dehydrogenase; Provisional
Probab=29.94 E-value=1.3e+02 Score=24.12 Aligned_cols=37 Identities=16% Similarity=0.357 Sum_probs=29.6
Q ss_pred HHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 033714 70 GKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106 (113)
Q Consensus 70 sk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y 106 (113)
++.....|..++.++|..+...+....+.+.+++..-
T Consensus 53 A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 89 (488)
T PRK13252 53 AKQGQKIWAAMTAMERSRILRRAVDILRERNDELAAL 89 (488)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4445678999999999999988888888888777653
No 62
>PF15581 Imm35: Immunity protein 35
Probab=29.76 E-value=1e+02 Score=19.43 Aligned_cols=23 Identities=9% Similarity=0.276 Sum_probs=18.2
Q ss_pred CHHHHHHHHHhhhcCCChhhhhH
Q 033714 65 SVAAVGKAGGEKWKSMSEADKAP 87 (113)
Q Consensus 65 ~~~eisk~l~~~Wk~ls~~eK~~ 87 (113)
+..-+...|.+.|+.|++++=..
T Consensus 31 ~i~~l~~lIe~eWRGl~~~qV~~ 53 (93)
T PF15581_consen 31 TIRNLESLIEHEWRGLPEEQVLY 53 (93)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHH
Confidence 46677888999999999886543
No 63
>PRK13968 putative succinate semialdehyde dehydrogenase; Provisional
Probab=29.70 E-value=1.4e+02 Score=23.90 Aligned_cols=38 Identities=16% Similarity=0.192 Sum_probs=30.4
Q ss_pred HHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHH
Q 033714 70 GKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 107 (113)
Q Consensus 70 sk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y~ 107 (113)
++..-..|..++.++|..+........+++..++....
T Consensus 38 A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~ 75 (462)
T PRK13968 38 AAAGFRDWRETNIDYRAQKLRDIGKALRARSEEMAQMI 75 (462)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34445679999999999999888888888888877643
No 64
>cd07099 ALDH_DDALDH Methylomonas sp. 4,4'-diapolycopene-dialdehyde dehydrogenase-like. The 4,4'-diapolycopene-dialdehyde dehydrogenase (DDALDH) involved in C30 carotenoid synthesis in Methylomonas sp. strain 16a and other similar sequences are present in this CD. DDALDH converts 4,4'-diapolycopene-dialdehyde into 4,4'-diapolycopene-diacid.
Probab=29.22 E-value=1.5e+02 Score=23.44 Aligned_cols=36 Identities=8% Similarity=0.303 Sum_probs=28.4
Q ss_pred HHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHH
Q 033714 70 GKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKN 105 (113)
Q Consensus 70 sk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~ 105 (113)
++.....|..++.++|..+...+......+.+++.+
T Consensus 27 a~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~ 62 (453)
T cd07099 27 ARAAQRAWAALGVEGRAQRLLRWKRALADHADELAE 62 (453)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556799999999999998888877777776654
No 65
>cd07084 ALDH_KGSADH-like ALDH subfamily: NAD(P)+-dependent alpha-ketoglutaric semialdehyde dehydrogenases and plant delta(1)-pyrroline-5-carboxylate dehydrogenase, ALDH family 12-like. ALDH subfamily which includes the NAD(P)+-dependent, alpha-ketoglutaric semialdehyde dehydrogenases (KGSADH, EC 1.2.1.26); plant delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH, EC=1.5.1.12 ), ALDH family 12; the N-terminal domain of the MaoC (monoamine oxidase C) dehydratase regulatory protein; and orthologs of MaoC, PaaZ and PaaN, which are putative ring-opening enzymes of the aerobic phenylacetic acid catabolic pathway.
Probab=29.10 E-value=1.3e+02 Score=24.00 Aligned_cols=39 Identities=10% Similarity=0.135 Sum_probs=31.6
Q ss_pred HHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 033714 68 AVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106 (113)
Q Consensus 68 eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y 106 (113)
+.++.....|+.++.++|......+.+..+.+..++..-
T Consensus 6 ~~A~~A~~~W~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 44 (442)
T cd07084 6 LAADISTKAARRLALPKRADFLARIIQRLAAKSYDIAAG 44 (442)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 455666778999999999999988888888888777654
No 66
>cd07104 ALDH_BenzADH-like ALDH subfamily: NAD(P)+-dependent benzaldehyde dehydrogenase II, vanillin dehydrogenase, p-hydroxybenzaldehyde dehydrogenase and related proteins. ALDH subfamily which includes the NAD(P)+-dependent, benzaldehyde dehydrogenase II (XylC, BenzADH, EC=1.2.1.28) involved in the oxidation of benzyl alcohol to benzoate; p-hydroxybenzaldehyde dehydrogenase (PchA, HBenzADH) which catalyzes the oxidation of p-hydroxybenzaldehyde to p-hydroxybenzoic acid; vanillin dehydrogenase (Vdh, VaniDH) involved in the metabolism of ferulic acid as seen in Pseudomonas putida KT2440; and other related sequences.
Probab=28.68 E-value=1.5e+02 Score=23.14 Aligned_cols=38 Identities=18% Similarity=0.335 Sum_probs=29.4
Q ss_pred HHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHH
Q 033714 68 AVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKN 105 (113)
Q Consensus 68 eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~ 105 (113)
+.++.....|..++.++|..+...+......+.+++.+
T Consensus 7 ~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~ 44 (431)
T cd07104 7 AAAAAAQKAWAATPPQERAAILRKAAEILEERRDEIAD 44 (431)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 34455667899999999999988888777777776655
No 67
>PF06394 Pepsin-I3: Pepsin inhibitor-3-like repeated domain; InterPro: IPR010480 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. The members of this group of proteins belong to MEROPS inhibitor family I33, clan IR; the nematode aspartyl protease inhibitors or Aspins. They are restricted to parasitic nematode species. Structural features common to the nematode Aspins include the presence of a signal peptide sequence and the conservation of all four cysteine residues in the mature protein. The Y[V.A]RDLT sequence motif has been suggested as being of crucial functional importance in several filarial nematode inhibitors [], this sequence is not conserved in Tco-API-1 from Trichostrongylus colubriformis (Black scour worm) and it has been demonstrated that Tco-API-1, is not an Aspin as it does not inhibit porcine pepsin []. Related inhibitors from Onchocerca volvulus, Ov33 [] and Ascaris suum (Pig roundworm), PI-3 [] inhibit the in vitro activity of aspartyl proteases such as pepsin and cathepsin E (MEROPS peptidase family A1). Aspin may facilitate the safe passage of the eggs of Ascaris through the host stomach without digestion by pepsin [, ]. The other parasitic nematodes known to express homologous proteins do not pass through the stomach of their hosts []. Several proteins in the family are potent allergens in mammals. The three-dimensional structures of pepsin inhibitor-3 (PI-3) from A. suum and of the complex between PI-3 and porcine pepsin at 1. 75 A and 2.45 A resolution, respectively, have revealed the mechanism of aspartic protease inhibition. PI-3 has a new fold consisting of two identical domains, each comprising an antiparallel beta-sheet flanked by an alpha-helix. In the enzyme-inhibitor complex, the N-terminal beta-strand of PI-3 pairs with one strand of the 'active site flap' (residues 70-82) of pepsin, thus forming an eight-stranded beta-sheet that spans the two proteins. PI-3 has a novel mode of inhibition, using its N-terminal residues to occupy and therefore block the first three binding pockets in pepsin for substrate residues C-terminal to the scissile bond (S1'-S3') [].; PDB: 1F32_A 1F34_B.
Probab=28.64 E-value=77 Score=19.36 Aligned_cols=25 Identities=12% Similarity=0.404 Sum_probs=14.5
Q ss_pred cCCChhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 033714 78 KSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 110 (113)
Q Consensus 78 k~ls~~eK~~y~~~a~~~k~~y~~~~~~y~~~~ 110 (113)
++|+++|.+ +...|.+++..|...+
T Consensus 38 R~Lt~~E~~--------eL~~y~~~v~~y~~~l 62 (76)
T PF06394_consen 38 RDLTPDEQQ--------ELKTYQKKVAAYKEQL 62 (76)
T ss_dssp EE--HHHHH--------HHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHH--------HHHHHHHHHHHHHHHH
Confidence 456666653 4466777777777654
No 68
>cd07136 ALDH_YwdH-P39616 Bacillus subtilis aldehyde dehydrogenase ywdH-like. Uncharacterized Bacillus subtilis ywdH aldehyde dehydrogenase (locus P39616) most closely related to the ALDHs and fatty ALDHs of families 3 and 14, and similar sequences, are included in this CD.
Probab=28.56 E-value=1.7e+02 Score=23.47 Aligned_cols=40 Identities=10% Similarity=0.001 Sum_probs=32.8
Q ss_pred HHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 033714 67 AAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106 (113)
Q Consensus 67 ~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y 106 (113)
-+.++..-..|..++..+|......+....+.+..++...
T Consensus 4 v~~a~~a~~~W~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 43 (449)
T cd07136 4 VEKQRAFFKTGATKDVEFRIEQLKKLKQAIKKYENEILEA 43 (449)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3555666678999999999999998888888888887764
No 69
>cd07137 ALDH_F3FHI Plant aldehyde dehydrogenase family 3 members F1, H1, and I1 and related proteins. Aldehyde dehydrogenase family members 3F1, 3H1, and 3I1 (ALDH3F1, ALDH3H1, and ALDH3I1), and similar plant sequences, are in this CD. In Arabidopsis thaliana, stress-regulated expression of ALDH3I1 was observed in leaves and osmotic stress expression of ALDH3H1 was observed in root tissue, whereas, ALDH3F1 expression was not stress responsive. Functional analysis of ALDH3I1 suggest it may be involved in a detoxification pathway in plants that limits aldehyde accumulation and oxidative stress.
Probab=28.56 E-value=1.6e+02 Score=23.38 Aligned_cols=39 Identities=10% Similarity=-0.113 Sum_probs=31.4
Q ss_pred HHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 033714 68 AVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106 (113)
Q Consensus 68 eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y 106 (113)
+.++..-..|..++.++|..+...+....+++.+++..-
T Consensus 6 ~~a~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~ 44 (432)
T cd07137 6 RELRETFRSGRTRSAEWRKSQLKGLLRLVDENEDDIFAA 44 (432)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666678999999999999998888888888777643
No 70
>PRK10455 periplasmic protein; Reviewed
Probab=28.55 E-value=1.2e+02 Score=21.07 Aligned_cols=28 Identities=21% Similarity=0.284 Sum_probs=20.8
Q ss_pred HHHHHHHhhhcCCChhhhhHHHHHHHHH
Q 033714 68 AVGKAGGEKWKSMSEADKAPYVAKAEKR 95 (113)
Q Consensus 68 eisk~l~~~Wk~ls~~eK~~y~~~a~~~ 95 (113)
+..+.-..++..|++++|..|.+..++-
T Consensus 118 ~~~~~~~qiy~vLTPEQr~q~~~~~ekr 145 (161)
T PRK10455 118 AHMETQNKIYNVLTPEQKKQFNANFEKR 145 (161)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3445556788999999999998876543
No 71
>cd07077 ALDH-like NAD(P)+-dependent aldehyde dehydrogenase-like (ALDH-like) family. The aldehyde dehydrogenase-like (ALDH-like) group of the ALDH superfamily of NAD(P)+-dependent enzymes which, in general, oxidize a wide range of endogenous and exogenous aliphatic and aromatic aldehydes to their corresponding carboxylic acids and play an important role in detoxification. This group includes families ALDH18, ALDH19, and ALDH20 and represents such proteins as gamma-glutamyl phosphate reductase, LuxC-like acyl-CoA reductase, and coenzyme A acylating aldehyde dehydrogenase. All of these proteins have a conserved cysteine that aligns with the catalytic cysteine of the ALDH group.
Probab=28.52 E-value=1.1e+02 Score=23.87 Aligned_cols=36 Identities=3% Similarity=0.060 Sum_probs=27.5
Q ss_pred HHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHH
Q 033714 70 GKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKN 105 (113)
Q Consensus 70 sk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~ 105 (113)
++.....|..++.++|..+........+++.+++.+
T Consensus 3 A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~ 38 (397)
T cd07077 3 AKNAQRTLAVNHDEQRDLIINAIANALYDTRQRLAS 38 (397)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567799999999998888887777777766654
No 72
>PRK00197 proA gamma-glutamyl phosphate reductase; Provisional
Probab=28.21 E-value=1.4e+02 Score=23.55 Aligned_cols=40 Identities=18% Similarity=0.111 Sum_probs=31.9
Q ss_pred HHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHH
Q 033714 68 AVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 107 (113)
Q Consensus 68 eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y~ 107 (113)
+.++..-..|..++.++|..+...+....+++..++.+..
T Consensus 11 ~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~ 50 (417)
T PRK00197 11 RRAKAASRKLAQLSTAQKNRALLAIADALEANAAEILAAN 50 (417)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3345556789999999999999988888888888877653
No 73
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=28.07 E-value=1.1e+02 Score=16.56 Aligned_cols=33 Identities=21% Similarity=0.299 Sum_probs=19.0
Q ss_pred HHHHHHHHhCCCCCC-----HHHHHHHHHhhhcCCChh
Q 033714 51 EFREQYKKDHPKNKS-----VAAVGKAGGEKWKSMSEA 83 (113)
Q Consensus 51 ~~r~~~~~~~p~~~~-----~~eisk~l~~~Wk~ls~~ 83 (113)
..+..++.-||+... ..+....|.+.|..|.+.
T Consensus 21 ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~ 58 (60)
T smart00271 21 AYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDP 58 (60)
T ss_pred HHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCC
Confidence 334445566787422 335666677777666654
No 74
>cd07098 ALDH_F15-22 Aldehyde dehydrogenase family 15A1 and 22A1-like. Aldehyde dehydrogenase family members ALDH15A1 (Saccharomyces cerevisiae YHR039C) and ALDH22A1 (Arabidopsis thaliana, EC=1.2.1.3), and similar sequences, are in this CD. Significant improvement of stress tolerance in tobacco plants was observed by overexpressing the ALDH22A1 gene from maize (Zea mays) and was accompanied by a reduction of malondialdehyde derived from cellular lipid peroxidation.
Probab=27.84 E-value=1.7e+02 Score=23.19 Aligned_cols=37 Identities=16% Similarity=0.262 Sum_probs=29.1
Q ss_pred HHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 033714 70 GKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106 (113)
Q Consensus 70 sk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y 106 (113)
++.....|..++.++|..+...+.....++..++...
T Consensus 27 A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 63 (465)
T cd07098 27 ARAAQREWAKTSFAERRKVLRSLLKYILENQEEICRV 63 (465)
T ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3444568999999999999988888888887776643
No 75
>PRK11241 gabD succinate-semialdehyde dehydrogenase I; Provisional
Probab=27.74 E-value=1.5e+02 Score=23.93 Aligned_cols=33 Identities=12% Similarity=0.294 Sum_probs=27.3
Q ss_pred HhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 033714 74 GEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106 (113)
Q Consensus 74 ~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y 106 (113)
...|..++.++|..+...+....+++.+++..-
T Consensus 61 ~~~W~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 93 (482)
T PRK11241 61 LPAWRALTAKERANILRRWFNLMMEHQDDLARL 93 (482)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 457999999999999988888888888777653
No 76
>cd07106 ALDH_AldA-AAD23400 Streptomyces aureofaciens putative aldehyde dehydrogenase AldA (AAD23400)-like. Putative aldehyde dehydrogenase, AldA, from Streptomyces aureofaciens (locus AAD23400) and other similar sequences are present in this CD.
Probab=27.64 E-value=1.6e+02 Score=23.26 Aligned_cols=37 Identities=8% Similarity=0.143 Sum_probs=29.5
Q ss_pred HHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 033714 70 GKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106 (113)
Q Consensus 70 sk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y 106 (113)
++.....|..++.++|..+...+......+..++.+-
T Consensus 28 a~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 64 (446)
T cd07106 28 AKAAFPGWSATPLEERRAALLAIADAIEANAEELARL 64 (446)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3444578999999999999988888888888777654
No 77
>PRK11903 aldehyde dehydrogenase; Provisional
Probab=27.39 E-value=1.4e+02 Score=24.48 Aligned_cols=32 Identities=13% Similarity=0.107 Sum_probs=27.5
Q ss_pred hhhcCCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 033714 75 EKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106 (113)
Q Consensus 75 ~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y 106 (113)
..|+.++..+|..+...+.+..++...++...
T Consensus 55 ~~W~~~~~~eR~~~L~~~a~~l~~~~~ela~~ 86 (521)
T PRK11903 55 AALRALTYAQRAALLAAIVKVLQANRDAYYDI 86 (521)
T ss_pred hhhhhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67999999999999988888888888777654
No 78
>TIGR01780 SSADH succinate-semialdehyde dehydrogenase. SSADH enzyme belongs to the aldehyde dehydrogenase family (pfam00171), sharing a common evolutionary origin and enzymatic mechanism with lactaldehyde dehydrogenase. Like in lactaldehyde dehydrogenase and succinate semialdehyde dehydrogenase, the mammalian catalytic glutamic acid and cysteine residues are conserved in all the enzymes of this family (PS00687, PS00070).
Probab=27.31 E-value=1.6e+02 Score=23.34 Aligned_cols=38 Identities=13% Similarity=0.256 Sum_probs=29.8
Q ss_pred HHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 033714 69 VGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106 (113)
Q Consensus 69 isk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y 106 (113)
.++.....|..++.++|..+...+....+.+..++...
T Consensus 27 ~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~ 64 (448)
T TIGR01780 27 AAYEAFKTWKNTTAKERSSLLRKWYNLMMENKDDLARL 64 (448)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 34455678999999999999988888878877777543
No 79
>cd07129 ALDH_KGSADH Alpha-Ketoglutaric Semialdehyde Dehydrogenase. Alpha-Ketoglutaric Semialdehyde (KGSA) Dehydrogenase (KGSADH, EC 1.2.1.26) catalyzes the NAD(P)+-dependent conversion of KGSA to alpha-ketoglutarate. This CD contains such sequences as those seen in Azospirillum brasilense, KGSADH-II (D-glucarate/D-galactarate-inducible) and KGSADH-III (hydroxy-L-proline-inducible). Both show similar high substrate specificity for KGSA and different coenzyme specificity; KGSADH-II is NAD+-dependent and KGSADH-III is NADP+-dependent. Also included in this CD is the NADP(+)-dependent aldehyde dehydrogenase from Vibrio harveyi which catalyzes the oxidation of long-chain aliphatic aldehydes to acids.
Probab=27.20 E-value=1.6e+02 Score=23.55 Aligned_cols=37 Identities=14% Similarity=0.248 Sum_probs=29.2
Q ss_pred HHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHH
Q 033714 69 VGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKN 105 (113)
Q Consensus 69 isk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~ 105 (113)
.++.....|..++.++|..+...+.+..+.+..++..
T Consensus 7 ~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~ 43 (454)
T cd07129 7 AAAAAFESYRALSPARRAAFLEAIADEIEALGDELVA 43 (454)
T ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3455567899999999999998888887777776664
No 80
>PHA02662 ORF131 putative membrane protein; Provisional
Probab=27.20 E-value=1.5e+02 Score=21.85 Aligned_cols=23 Identities=22% Similarity=0.263 Sum_probs=20.4
Q ss_pred CHHHHHHHHHhhhcCCChhhhhH
Q 033714 65 SVAAVGKAGGEKWKSMSEADKAP 87 (113)
Q Consensus 65 ~~~eisk~l~~~Wk~ls~~eK~~ 87 (113)
++.-+.+.+.+....|+++||..
T Consensus 75 sf~lll~Al~Et~~~Lp~~qK~~ 97 (226)
T PHA02662 75 ALALASAALAETLAELPRADRLA 97 (226)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHH
Confidence 58889999999999999999864
No 81
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=27.10 E-value=1.4e+02 Score=23.94 Aligned_cols=43 Identities=16% Similarity=0.222 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCChhhhhHHHHH
Q 033714 49 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAK 91 (113)
Q Consensus 49 ~~~~r~~~~~~~p~~~~~~eisk~l~~~Wk~ls~~eK~~y~~~ 91 (113)
-+..|...+.-||+.....+..+.|.+.|..|++.+|..-.+.
T Consensus 46 KkAYrkla~k~HPDk~~~~e~F~~i~~AYevLsD~~kR~~YD~ 88 (421)
T PTZ00037 46 KKAYRKLAIKHHPDKGGDPEKFKEISRAYEVLSDPEKRKIYDE 88 (421)
T ss_pred HHHHHHHHHHHCCCCCchHHHHHHHHHHHHHhccHHHHHHHhh
Confidence 3455666677899942345888899999999998876655544
No 82
>cd07108 ALDH_MGR_2402 Magnetospirillum NAD(P)+-dependent aldehyde dehydrogenase MSR-1-like. NAD(P)+-dependent aldehyde dehydrogenase of Magnetospirillum gryphiswaldense MSR-1 (MGR_2402) , and other similar sequences, are present in this CD.
Probab=26.93 E-value=1.7e+02 Score=23.25 Aligned_cols=37 Identities=11% Similarity=0.258 Sum_probs=29.2
Q ss_pred HHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 033714 70 GKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106 (113)
Q Consensus 70 sk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y 106 (113)
++.....|..++.++|..+...+......+..++.+-
T Consensus 28 a~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 64 (457)
T cd07108 28 AKAAFPEWAATPARERGKLLARIADALEARSEELARL 64 (457)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4445678999999999999888888878877777554
No 83
>cd07100 ALDH_SSADH1_GabD1 Mycobacterium tuberculosis succinate-semialdehyde dehydrogenase 1-like. Succinate-semialdehyde dehydrogenase 1 (SSADH1, GabD1, EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation of succinate semialdehyde (SSA) to succinate. SSADH activity in Mycobacterium tuberculosis (Mtb) is encoded by both gabD1 (Rv0234c) and gabD2 (Rv1731). The Mtb GabD1 SSADH1 reportedly is an enzyme of the gamma-aminobutyrate shunt, which forms a functional link between two TCA half-cycles by converting alpha-ketoglutarate to succinate.
Probab=26.90 E-value=1.7e+02 Score=23.08 Aligned_cols=37 Identities=19% Similarity=0.228 Sum_probs=28.0
Q ss_pred HHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHH
Q 033714 69 VGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKN 105 (113)
Q Consensus 69 isk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~ 105 (113)
.++..-..|..++.++|..+...+....+.+..++..
T Consensus 7 ~A~~A~~~W~~~~~~~R~~~L~~~a~~l~~~~~~la~ 43 (429)
T cd07100 7 RAHAAFLAWRKTSFAERAALLRKLADLLRERKDELAR 43 (429)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3444557799999999999988888777777766544
No 84
>cd07101 ALDH_SSADH2_GabD2 Mycobacterium tuberculosis succinate-semialdehyde dehydrogenase 2-like. Succinate-semialdehyde dehydrogenase 2 (SSADH2) and similar proteins are in this CD. SSADH1 (GabD1, EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation of succinate semialdehyde to succinate. SSADH activity in Mycobacterium tuberculosis is encoded by both gabD1 (Rv0234c) and gabD2 (Rv1731), however ,the Vmax of GabD1 was shown to be much higher than that of GabD2, and GabD2 (SSADH2) is likely to serve physiologically as a dehydrogenase for a different aldehyde(s).
Probab=26.82 E-value=1.6e+02 Score=23.28 Aligned_cols=36 Identities=14% Similarity=0.280 Sum_probs=28.5
Q ss_pred HHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 033714 71 KAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106 (113)
Q Consensus 71 k~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y 106 (113)
+.....|..++.++|..+...+.....++..++.+.
T Consensus 28 ~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~ 63 (454)
T cd07101 28 RAAQRAWAARPFAERAAVFLRFHDLVLERRDELLDL 63 (454)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 344577999999999999988888877887776553
No 85
>cd07131 ALDH_AldH-CAJ73105 Uncharacterized Candidatus kuenenia aldehyde dehydrogenase AldH (CAJ73105)-like. Uncharacterized aldehyde dehydrogenase of Candidatus kuenenia AldH (locus CAJ73105) and similar sequences with similarity to alpha-aminoadipic semialdehyde dehydrogenase (AASADH, human ALDH7A1, EC=1.2.1.31), Arabidopsis ALDH7B4, and Streptomyces clavuligerus delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH) are included in this CD.
Probab=26.67 E-value=1.7e+02 Score=23.34 Aligned_cols=36 Identities=11% Similarity=0.350 Sum_probs=28.1
Q ss_pred HHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHH
Q 033714 70 GKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKN 105 (113)
Q Consensus 70 sk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~ 105 (113)
++.....|..++.++|..+...+.....++.+++..
T Consensus 46 a~~A~~~w~~~~~~~R~~~l~~~a~~l~~~~~ela~ 81 (478)
T cd07131 46 AREAFPEWRKVPAPRRAEYLFRAAELLKKRKEELAR 81 (478)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456799999999999988888877777777654
No 86
>TIGR01804 BADH glycine betaine aldehyde dehydrogenase. Betaine aldehyde dehydrogenase is a member of the aldehyde dehydrogenase family (pfam00171).
Probab=26.25 E-value=1.7e+02 Score=23.32 Aligned_cols=37 Identities=11% Similarity=0.325 Sum_probs=29.8
Q ss_pred HHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 033714 70 GKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106 (113)
Q Consensus 70 sk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y 106 (113)
++.....|..++.++|..+...+.+....+..++.+.
T Consensus 44 a~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~ 80 (467)
T TIGR01804 44 ARRAQGEWASMTPEERGRILRRIAELIRERNEELAKL 80 (467)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3444578999999999999998888888888777654
No 87
>cd01145 TroA_c Periplasmic binding protein TroA_c. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=26.19 E-value=2.3e+02 Score=19.78 Aligned_cols=45 Identities=13% Similarity=0.221 Sum_probs=34.4
Q ss_pred HHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 033714 66 VAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 110 (113)
Q Consensus 66 ~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y~~~~ 110 (113)
...+...|++....+.++.+..|.+-++....+-..-...+.+.+
T Consensus 117 ~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~l 161 (203)
T cd01145 117 APALAKALADALIELDPSEQEEYKENLRVFLAKLNKLLREWERQF 161 (203)
T ss_pred HHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 557777888888888999999999988877777666666665544
No 88
>PLN02278 succinic semialdehyde dehydrogenase
Probab=26.07 E-value=1.7e+02 Score=23.74 Aligned_cols=37 Identities=5% Similarity=0.240 Sum_probs=29.4
Q ss_pred HHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 033714 70 GKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106 (113)
Q Consensus 70 sk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y 106 (113)
++..-..|..++.++|..+...+....+.+..++..-
T Consensus 71 A~~A~~~W~~~~~~~R~~~L~~~a~~l~~~~~~la~~ 107 (498)
T PLN02278 71 AHDAFPSWSKLTASERSKILRRWYDLIIANKEDLAQL 107 (498)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3444567999999999999998888888887777654
No 89
>cd07138 ALDH_CddD_SSP0762 Rhodococcus ruber 6-oxolauric acid dehydrogenase-like. The 6-oxolauric acid dehydrogenase (CddD) from Rhodococcus ruber SC1 which converts 6-oxolauric acid to dodecanedioic acid, and the aldehyde dehydrogenase (locus SSP0762) from Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 and other similar sequences, are included in this CD.
Probab=26.02 E-value=1.6e+02 Score=23.38 Aligned_cols=38 Identities=8% Similarity=0.203 Sum_probs=29.9
Q ss_pred HHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 033714 69 VGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106 (113)
Q Consensus 69 isk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y 106 (113)
.++.....|..++.++|..+...+.+....+.+++.+-
T Consensus 44 ~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~ 81 (466)
T cd07138 44 AARRAFPAWSATSVEERAALLERIAEAYEARADELAQA 81 (466)
T ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 34455568999999999999988888878777777654
No 90
>cd07135 ALDH_F14-YMR110C Saccharomyces cerevisiae aldehyde dehydrogenase family 14 and related proteins. Aldehyde dehydrogenase family 14 (ALDH14), isolated mainly from the mitochondrial outer membrane of Saccharomyces cerevisiae (YMR110C) and most closely related to the plant and animal ALDHs and fatty ALDHs family 3 members, and similar fungal sequences, are present in this CD.
Probab=25.91 E-value=1.8e+02 Score=23.10 Aligned_cols=38 Identities=8% Similarity=-0.184 Sum_probs=30.0
Q ss_pred HHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 033714 69 VGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106 (113)
Q Consensus 69 isk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y 106 (113)
.++..-..|..++.++|..+...+.+....+.+++.+-
T Consensus 13 ~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~ 50 (436)
T cd07135 13 RLRATFRSGKTKDLEYRLWQLKQLYWAVKDNEEAIVEA 50 (436)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 34445567999999999999988888888888777653
No 91
>PRK13473 gamma-aminobutyraldehyde dehydrogenase; Provisional
Probab=25.78 E-value=1.8e+02 Score=23.22 Aligned_cols=37 Identities=14% Similarity=0.222 Sum_probs=29.0
Q ss_pred HHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 033714 70 GKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106 (113)
Q Consensus 70 sk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y 106 (113)
++.....|..++.++|..+...+.....++..++...
T Consensus 48 A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~ 84 (475)
T PRK13473 48 ADAAFPEWSQTTPKERAEALLKLADAIEENADEFARL 84 (475)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444568999999999999988888877777776654
No 92
>cd07147 ALDH_F21_RNP123 Aldehyde dehydrogenase family 21A1-like. Aldehyde dehydrogenase ALDH21A1 (gene name RNP123) was first described in the moss Tortula ruralis and is believed to play an important role in the detoxification of aldehydes generated in response to desiccation- and salinity-stress, and ALDH21A1 expression represents a unique stress tolerance mechanism. So far, of plants, only the bryophyte sequence has been observed, but similar protein sequences from bacteria and archaea are also present in this CD.
Probab=25.75 E-value=1.8e+02 Score=22.97 Aligned_cols=36 Identities=8% Similarity=0.079 Sum_probs=28.4
Q ss_pred HHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHH
Q 033714 70 GKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKN 105 (113)
Q Consensus 70 sk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~ 105 (113)
++.....|..++.++|..+...+......+..++.+
T Consensus 30 A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~ 65 (452)
T cd07147 30 AVKAFRPMRALPAHRRAAILLHCVARLEERFEELAE 65 (452)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 444557899999999999998888877777777654
No 93
>cd07559 ALDH_ACDHII_AcoD-like Ralstonia eutrophus NAD+-dependent acetaldehyde dehydrogenase II and Staphylococcus aureus AldA1 (SACOL0154)-like. Included in this CD is the NAD+-dependent, acetaldehyde dehydrogenase II (AcDHII, AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes) eutrophus H16 involved in the catabolism of acetoin and ethanol, and similar proteins, such as, the dimeric dihydrolipoamide dehydrogenase of the acetoin dehydrogenase enzyme system of Klebsiella pneumonia. Also included are sequences similar to the NAD+-dependent chloroacetaldehyde dehydrogenases (AldA and AldB) of Xanthobacter autotrophicus GJ10 which are involved in the degradation of 1,2-dichloroethane, as well as, the uncharacterized aldehyde dehydrogenase from Staphylococcus aureus (AldA1, locus SACOL0154) and other similar sequences.
Probab=25.37 E-value=1.9e+02 Score=23.28 Aligned_cols=37 Identities=19% Similarity=0.172 Sum_probs=29.2
Q ss_pred HHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 033714 70 GKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106 (113)
Q Consensus 70 sk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y 106 (113)
++.....|..++.++|..+...+....+.+..++..-
T Consensus 47 A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~ 83 (480)
T cd07559 47 AHEAFKTWGKTSVAERANILNKIADRIEENLELLAVA 83 (480)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3444567999999999999998888888887777653
No 94
>TIGR01238 D1pyr5carbox3 delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain). This model represents one of several related branches of delta-1-pyrroline-5-carboxylate dehydrogenase. Members of this branch are the C-terminal domain of the PutA bifunctional proline dehydrogenase / delta-1-pyrroline-5-carboxylate dehydrogenase.
Probab=25.33 E-value=1.8e+02 Score=23.63 Aligned_cols=36 Identities=6% Similarity=0.111 Sum_probs=29.0
Q ss_pred HHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHH
Q 033714 70 GKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKN 105 (113)
Q Consensus 70 sk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~ 105 (113)
++.....|..++-.+|..+...+....+.+..++..
T Consensus 83 A~~a~~~W~~~~~~~R~~~L~~~a~~l~~~~~ela~ 118 (500)
T TIGR01238 83 AQQAFPTWNATPAKERAAKLDRLADLLELHMPELMA 118 (500)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 344457899999999999999888888888777654
No 95
>cd07130 ALDH_F7_AASADH NAD+-dependent alpha-aminoadipic semialdehyde dehydrogenase, ALDH family members 7A1 and 7B. Alpha-aminoadipic semialdehyde dehydrogenase (AASADH, EC=1.2.1.31), also known as ALDH7A1, Antiquitin-1, ALDH7B, or delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH), is a NAD+-dependent ALDH. Human ALDH7A1 is involved in the pipecolic acid pathway of lysine catabolism, catalyzing the oxidation of alpha-aminoadipic semialdehyde to alpha-aminoadipate. Arabidopsis thaliana ALDH7B4 appears to be an osmotic-stress-inducible ALDH gene encoding a turgor-responsive or stress-inducible ALDH. The Streptomyces clavuligerus P6CDH appears to be involved in cephamycin biosynthesis, catalyzing the second stage of the two-step conversion of lysine to alpha-aminoadipic acid. The ALDH7A1 enzyme and others in this group have been observed as tetramers, yet the bacterial P6CDH enzyme has been reported as a monomer.
Probab=24.98 E-value=1.9e+02 Score=23.12 Aligned_cols=37 Identities=5% Similarity=0.220 Sum_probs=29.4
Q ss_pred HHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHH
Q 033714 69 VGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKN 105 (113)
Q Consensus 69 isk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~ 105 (113)
.++.....|..++.++|............++..++..
T Consensus 42 ~a~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~ 78 (474)
T cd07130 42 AAQEAFKEWRDVPAPKRGEIVRQIGDALRKKKEALGK 78 (474)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444557799999999999998888888888877754
No 96
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=24.93 E-value=2.4e+02 Score=20.64 Aligned_cols=46 Identities=9% Similarity=-0.010 Sum_probs=35.2
Q ss_pred HHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 033714 66 VAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQV 111 (113)
Q Consensus 66 ~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y~~~~~ 111 (113)
...+...|++....+.++.+..|.+-++....+-..-...+++.++
T Consensus 121 ~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~L~~l~~~~~~~~~ 166 (266)
T cd01018 121 AKIMAENIYEALAELDPQNATYYQANLDALLAELDALDSEIRTILS 166 (266)
T ss_pred HHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5577778888888889999999999888877776666666665543
No 97
>PF00171 Aldedh: Aldehyde dehydrogenase family; InterPro: IPR015590 Aldehyde dehydrogenases (1.2.1.3 from EC and 1.2.1.5 from EC) are enzymes that oxidize a wide variety of aliphatic and aromatic aldehydes using NADP as a cofactor. In mammals at least four different forms of the enzyme are known []: class-1 (or Ald C) a tetrameric cytosolic enzyme, class-2 (or Ald M) a tetrameric mitochondrial enzyme, class- 3 (or Ald D) a dimeric cytosolic enzyme, and class IV a microsomal enzyme. Aldehyde dehydrogenases have also been sequenced from fungal and bacterial species. A number of enzymes are known to be evolutionary related to aldehyde dehydrogenases. A glutamic acid and a cysteine residue have been implicated in the catalytic activity of mammalian aldehyde dehydrogenase. These residues are conserved in all the enzymes of this entry. Some of the proteins in this entry are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Alt a 10 and Cla h 3.; GO: 0016491 oxidoreductase activity, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 3R31_A 3HAZ_A 1UXQ_A 1UXP_A 1UXR_A 1UXU_A 1UXN_A 1KY8_A 1UXT_A 1UXV_A ....
Probab=24.88 E-value=1.8e+02 Score=23.15 Aligned_cols=39 Identities=13% Similarity=0.299 Sum_probs=31.1
Q ss_pred HHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 033714 68 AVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106 (113)
Q Consensus 68 eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y 106 (113)
+.++.....|..++.++|......+.+..+++..++.+-
T Consensus 36 ~~A~~A~~~w~~~~~~~R~~iL~~~a~~l~~~~~~la~~ 74 (462)
T PF00171_consen 36 EAARAAFKEWSKLPAAERARILERFADLLEERRDELAEL 74 (462)
T ss_dssp HHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhcccccccc
Confidence 444555678999999999999998888888887776654
No 98
>PF07813 LTXXQ: LTXXQ motif family protein; InterPro: IPR012899 This five residue motif is found in a number of bacterial proteins bearing similarity to the protein CpxP (P32158 from SWISSPROT). This is a periplasmic protein that aids in combating extracytoplasmic protein-mediated toxicity, and may also be involved in the response to alkaline pH []. Another member of this family, Spy (P77754 from SWISSPROT) is also a periplasmic protein that may be involved in the response to stress []. The homology between CpxP and Spy may indicate that these two proteins are functionally related []. The motif is found repeated twice in many members of this entry. ; GO: 0042597 periplasmic space; PDB: 3ITF_B 3QZC_B 3OEO_D 3O39_A.
Probab=24.86 E-value=1.2e+02 Score=18.15 Aligned_cols=26 Identities=12% Similarity=0.144 Sum_probs=19.3
Q ss_pred HHHHHHHHHhhhcCCChhhhhHHHHH
Q 033714 66 VAAVGKAGGEKWKSMSEADKAPYVAK 91 (113)
Q Consensus 66 ~~eisk~l~~~Wk~ls~~eK~~y~~~ 91 (113)
...+.......+..|++++|..|.+.
T Consensus 74 ~~~~~~~~~~~~~vLt~eQk~~~~~l 99 (100)
T PF07813_consen 74 MEERAKAQHALYAVLTPEQKEKFDQL 99 (100)
T ss_dssp HHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHh
Confidence 34566777888999999999888754
No 99
>cd07079 ALDH_F18-19_ProA-GPR Gamma-glutamyl phosphate reductase (GPR), aldehyde dehydrogenase families 18 and 19. Gamma-glutamyl phosphate reductase (GPR), a L-proline biosynthetic pathway (PBP) enzyme that catalyzes the NADPH dependent reduction of L-gamma-glutamyl 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The glutamate route of the PBP involves two enzymatic steps catalyzed by gamma-glutamyl kinase (GK, EC 2.7.2.11) and GPR (EC 1.2.1.41). These enzymes are fused into the bifunctional enzyme, ProA or delta(1)-pyrroline-5-carboxylate synthetase (P5CS) in plants and animals, whereas they are separate enzymes in bacteria and yeast. In humans, the P5CS (ALDH18A1), an inner mitochondrial membrane enzyme, is essential to the de novo synthesis of the amino acids proline and arginine. Tomato (Lycopersicon esculentum) has both the prokaryotic-like polycistronic operons encoding GK and GPR (PRO1, ALDH19) and the full-length, bifunctional P5CS (PRO2, ALDH18B1).
Probab=24.77 E-value=1.6e+02 Score=23.20 Aligned_cols=39 Identities=10% Similarity=0.074 Sum_probs=30.2
Q ss_pred HHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 033714 68 AVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106 (113)
Q Consensus 68 eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y 106 (113)
+.++..-..|..++.++|..+...+.....++..++..-
T Consensus 5 ~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~ 43 (406)
T cd07079 5 KRAKAASRALATLSTEQKNAALLAIADALEANRDEILEA 43 (406)
T ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhchHHHHHH
Confidence 344556678999999999999888888777777776654
No 100
>cd07121 ALDH_EutE Ethanolamine utilization protein EutE-like. Coenzyme A acylating aldehyde dehydrogenase (ACDH), an NAD+ and CoA-dependent acetaldehyde dehydrogenase, acetylating (EC=1.2.1.10), converts acetaldehyde into acetyl-CoA. This CD is limited to such monofunctional enzymes as the Ethanolamine utilization protein, EutE, in Salmonella typhimurium. Mutations in eutE abolish the ability to utilize ethanolamine as a carbon source.
Probab=24.67 E-value=1.8e+02 Score=23.11 Aligned_cols=40 Identities=13% Similarity=0.269 Sum_probs=31.3
Q ss_pred HHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHH
Q 033714 68 AVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 107 (113)
Q Consensus 68 eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y~ 107 (113)
+.++.....|..++.++|...........+++..++.+..
T Consensus 11 ~~A~~A~~~W~~~~~~~R~~iL~~~a~~l~~~~~ela~~~ 50 (429)
T cd07121 11 AAAKAAQKQYRKCTLADREKIIEAIREALLSNAEELAEMA 50 (429)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666789999999999998888888788777776643
No 101
>TIGR03240 arg_catab_astD succinylglutamic semialdehyde dehydrogenase. Members of this protein family are succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71), the fourth enzyme in the arginine succinyltransferase (AST) pathway for arginine catabolism.
Probab=24.48 E-value=2e+02 Score=23.13 Aligned_cols=37 Identities=14% Similarity=0.201 Sum_probs=28.9
Q ss_pred HHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 033714 70 GKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106 (113)
Q Consensus 70 sk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y 106 (113)
++.....|..++.++|..+...+.....++.+++..-
T Consensus 44 A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 80 (484)
T TIGR03240 44 ARAAFPAWARLSLEERIAVVQRFAALLEERKEALARV 80 (484)
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3444567999999999999988888888887776653
No 102
>cd07151 ALDH_HBenzADH NADP+-dependent p-hydroxybenzaldehyde dehydrogenase-like. NADP+-dependent, p-hydroxybenzaldehyde dehydrogenase (PchA, HBenzADH) which catalyzes oxidation of p-hydroxybenzaldehyde to p-hydroxybenzoic acid and other related sequences are included in this CD.
Probab=24.47 E-value=1.9e+02 Score=23.03 Aligned_cols=38 Identities=16% Similarity=0.320 Sum_probs=29.0
Q ss_pred HHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 033714 69 VGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106 (113)
Q Consensus 69 isk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y 106 (113)
.++.....|..++.++|..+...+.+....+..++..-
T Consensus 40 ~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 77 (465)
T cd07151 40 AAAAAQKEWAATLPQERAEILEKAAQILEERRDEIVEW 77 (465)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 34445577999999999999988888777777766653
No 103
>PLN02315 aldehyde dehydrogenase family 7 member
Probab=24.42 E-value=2e+02 Score=23.52 Aligned_cols=35 Identities=6% Similarity=0.120 Sum_probs=27.7
Q ss_pred HHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHH
Q 033714 71 KAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKN 105 (113)
Q Consensus 71 k~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~ 105 (113)
+.....|..++.++|..+...+....+++..++..
T Consensus 66 ~~A~~~W~~~~~~~R~~~L~~~a~~l~~~~~~la~ 100 (508)
T PLN02315 66 EEAAKIWMQVPAPKRGEIVRQIGDALRAKLDYLGR 100 (508)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 33445799999999999998888887877776654
No 104
>cd07097 ALDH_KGSADH-YcbD Bacillus subtilis NADP+-dependent alpha-ketoglutaric semialdehyde dehydrogenase ycbD-like. Kinetic studies of the Bacillus subtilis ALDH-like ycbD protein, which is involved in d-glucarate/d-galactarate utilization, reveal that it is a NADP+-dependent, alpha-ketoglutaric semialdehyde dehydrogenase (KGSADH). KGSADHs (EC 1.2.1.26) catalyze the NAD(P)+-dependent conversion of KGSA to alpha-ketoglutarate. Interestingly, the NADP+-dependent, tetrameric, 2,5-dioxopentanoate dehydrogenase (EC=1.2.1.26), an enzyme involved in the catabolic pathway for D-arabinose in Sulfolobus solfataricus, also clusters in this group. This CD shows a distant phylogenetic relationship to the Azospirillum brasilense KGSADH-II (-III) group.
Probab=24.41 E-value=2e+02 Score=23.01 Aligned_cols=36 Identities=17% Similarity=0.250 Sum_probs=28.6
Q ss_pred HHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 033714 71 KAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106 (113)
Q Consensus 71 k~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y 106 (113)
+.....|..++.++|..+...+....+.+..++.+.
T Consensus 47 ~~A~~~W~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 82 (473)
T cd07097 47 AAAFPAWRRTSPEARADILDKAGDELEARKEELARL 82 (473)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 334567999999999999988888888877777654
No 105
>cd07105 ALDH_SaliADH Salicylaldehyde dehydrogenase, DoxF-like. Salicylaldehyde dehydrogenase (DoxF, SaliADH, EC=1.2.1.65) involved in the upper naphthalene catabolic pathway of Pseudomonas strain C18 and other similar sequences are present in this CD.
Probab=24.39 E-value=1.7e+02 Score=23.08 Aligned_cols=36 Identities=11% Similarity=0.169 Sum_probs=27.7
Q ss_pred HHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHH
Q 033714 70 GKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKN 105 (113)
Q Consensus 70 sk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~ 105 (113)
++.....|..++.++|..+...+.+..+.+..++.+
T Consensus 9 A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~ 44 (432)
T cd07105 9 AAAAFPAWSKTPPSERRDILLKAADLLESRRDEFIE 44 (432)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 444556799999999999988888777777766654
No 106
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=24.34 E-value=2.4e+02 Score=20.26 Aligned_cols=46 Identities=17% Similarity=0.167 Sum_probs=35.3
Q ss_pred HHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 033714 66 VAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQV 111 (113)
Q Consensus 66 ~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y~~~~~ 111 (113)
...+...|++....+.++.+..|.+-++....+-..--..+.+.++
T Consensus 101 ~~~~~~~Ia~~L~~~~P~~~~~y~~N~~~~~~~L~~l~~~~~~~~~ 146 (256)
T PF01297_consen 101 AKKMAEAIADALSELDPANKDYYEKNAEKYLKELDELDAEIKEKLA 146 (256)
T ss_dssp HHHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4567777888888889999999999888877777766666665543
No 107
>cd07086 ALDH_F7_AASADH-like NAD+-dependent alpha-aminoadipic semialdehyde dehydrogenase and related proteins. ALDH subfamily which includes the NAD+-dependent, alpha-aminoadipic semialdehyde dehydrogenase (AASADH, EC=1.2.1.31), also known as Antiquitin-1, ALDH7A1, ALDH7B or delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH), and other similar sequences, such as the uncharacterized aldehyde dehydrogenase of Candidatus kuenenia AldH (locus CAJ73105).
Probab=24.22 E-value=1.9e+02 Score=23.13 Aligned_cols=37 Identities=5% Similarity=0.221 Sum_probs=28.8
Q ss_pred HHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 033714 70 GKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106 (113)
Q Consensus 70 sk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y 106 (113)
++.....|..++.++|..+...+....+.+..++.+-
T Consensus 44 A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 80 (478)
T cd07086 44 AREAFKEWRKVPAPRRGEIVRQIGEALRKKKEALGRL 80 (478)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3444567999999999999988888888877776553
No 108
>cd07092 ALDH_ABALDH-YdcW Escherichia coli NAD+-dependent gamma-aminobutyraldehyde dehydrogenase YdcW-like. NAD+-dependent, tetrameric, gamma-aminobutyraldehyde dehydrogenase (ABALDH), YdcW of Escherichia coli K12, catalyzes the oxidation of gamma-aminobutyraldehyde to gamma-aminobutyric acid. ABALDH can also oxidize n-alkyl medium-chain aldehydes, but with a lower catalytic efficiency.
Probab=24.14 E-value=2.1e+02 Score=22.51 Aligned_cols=37 Identities=14% Similarity=0.257 Sum_probs=29.0
Q ss_pred HHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 033714 70 GKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106 (113)
Q Consensus 70 sk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y 106 (113)
++.....|..++.++|..+...+.....++..++.+.
T Consensus 28 a~~a~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~ 64 (450)
T cd07092 28 AHAAFPSWRRTTPAERSKALLKLADAIEENAEELAAL 64 (450)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3445578999999999999888888777777766654
No 109
>cd07145 ALDH_LactADH_F420-Bios Methanocaldococcus jannaschii NAD+-dependent lactaldehyde dehydrogenase-like. NAD+-dependent, lactaldehyde dehydrogenase (EC=1.2.1.22) involved the biosynthesis of coenzyme F(420) in Methanocaldococcus jannaschii through the oxidation of lactaldehyde to lactate and generation of NAPH, and similar sequences are included in this CD.
Probab=24.05 E-value=2e+02 Score=22.75 Aligned_cols=36 Identities=3% Similarity=0.083 Sum_probs=28.0
Q ss_pred HHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHH
Q 033714 70 GKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKN 105 (113)
Q Consensus 70 sk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~ 105 (113)
++.....|..++.++|..+..........+..++..
T Consensus 30 A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~ 65 (456)
T cd07145 30 AEKAKDVMSNLPAYKRYKILMKVAELIERRKEELAK 65 (456)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 444457899999999999988888777777766654
No 110
>cd07088 ALDH_LactADH-AldA Escherichia coli lactaldehyde dehydrogenase AldA-like. Lactaldehyde dehydrogenase from Escherichia coli (AldA, LactADH, EC=1.2.1.22), an NAD(+)-dependent enzyme involved in the metabolism of L-fucose and L-rhamnose, and other similar sequences are present in this CD.
Probab=24.05 E-value=1.9e+02 Score=22.93 Aligned_cols=36 Identities=17% Similarity=0.408 Sum_probs=28.4
Q ss_pred HHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHH
Q 033714 70 GKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKN 105 (113)
Q Consensus 70 sk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~ 105 (113)
++.....|..++.++|..+...+.+..+.+.+++..
T Consensus 44 A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~ 79 (468)
T cd07088 44 AEAAQKAWERLPAIERAAYLRKLADLIRENADELAK 79 (468)
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 444567799999999999988888877777777654
No 111
>cd07110 ALDH_F10_BADH Arabidopsis betaine aldehyde dehydrogenase 1 and 2, ALDH family 10A8 and 10A9-like. Present in this CD are the Arabidopsis betaine aldehyde dehydrogenase (BADH) 1 (chloroplast) and 2 (mitochondria), also known as, aldehyde dehydrogenase family 10 member A8 and aldehyde dehydrogenase family 10 member A9, respectively, and are putative dehydration- and salt-inducible BADHs (EC 1.2.1.8) that catalyze the oxidation of betaine aldehyde to the compatible solute glycine betaine.
Probab=23.94 E-value=2e+02 Score=22.77 Aligned_cols=36 Identities=17% Similarity=0.381 Sum_probs=28.3
Q ss_pred HHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHH
Q 033714 70 GKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKN 105 (113)
Q Consensus 70 sk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~ 105 (113)
++.....|..++.++|..+...+.+..+++..++.+
T Consensus 28 A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~ 63 (456)
T cd07110 28 ARRAFPRWKKTTGAERAKYLRAIAEGVRERREELAE 63 (456)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 344557899999999999988888877777776654
No 112
>cd07095 ALDH_SGSD_AstD N-succinylglutamate 5-semialdehyde dehydrogenase, AstD-like. N-succinylglutamate 5-semialdehyde dehydrogenase or succinylglutamic semialdehyde dehydrogenase (SGSD, E. coli AstD, EC=1.2.1.71) involved in L-arginine degradation via the arginine succinyltransferase (AST) pathway and catalyzes the NAD+-dependent reduction of succinylglutamate semialdehyde into succinylglutamate.
Probab=23.85 E-value=2.1e+02 Score=22.64 Aligned_cols=38 Identities=13% Similarity=0.260 Sum_probs=29.2
Q ss_pred HHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHH
Q 033714 68 AVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKN 105 (113)
Q Consensus 68 eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~ 105 (113)
+.++..-..|..++.++|..+...+....+.+..++.+
T Consensus 7 ~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~ 44 (431)
T cd07095 7 AAARAAFPGWAALSLEERAAILRRFAELLKANKEELAR 44 (431)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 33455567899999999999988888887777776654
No 113
>cd07115 ALDH_HMSADH_HapE Pseudomonas fluorescens 4-hydroxymuconic semialdehyde dehydrogenase-like. 4-hydroxymuconic semialdehyde dehydrogenase (HapE, EC=1.2.1.61) of Pseudomonas fluorescens ACB involved in 4-hydroxyacetophenone degradation, and putative hydroxycaproate semialdehyde dehydrogenase (ChnE) of Brachymonas petroleovorans involved in cyclohexane metabolism, and other similar sequences, are present in this CD.
Probab=23.85 E-value=2e+02 Score=22.82 Aligned_cols=39 Identities=15% Similarity=0.308 Sum_probs=30.0
Q ss_pred HHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 033714 68 AVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106 (113)
Q Consensus 68 eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y 106 (113)
+.++.....|..++.++|..+...+....+.+..++..-
T Consensus 26 ~~a~~A~~~w~~~~~~~R~~~l~~~a~~l~~~~~~la~~ 64 (453)
T cd07115 26 AAARAAFEAWSAMDPAERGRILWRLAELILANADELARL 64 (453)
T ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 334455678999999999999988888877777776653
No 114
>cd07118 ALDH_SNDH Gluconobacter oxydans L-sorbosone dehydrogenase-like. Included in this CD is the L-sorbosone dehydrogenase (SNDH) from Gluconobacter oxydans UV10. In G. oxydans, D-sorbitol is converted to 2-keto-L-gulonate (a precursor of L-ascorbic acid) in sequential oxidation steps catalyzed by a FAD-dependent, L-sorbose dehydrogenase and an NAD(P)+-dependent, L-sorbosone dehydrogenase.
Probab=23.82 E-value=2.6e+02 Score=22.24 Aligned_cols=30 Identities=20% Similarity=0.277 Sum_probs=25.8
Q ss_pred hcCCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 033714 77 WKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106 (113)
Q Consensus 77 Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y 106 (113)
|..++-++|..+...+.+....+..++..-
T Consensus 37 w~~~~~~~R~~~l~~~a~~l~~~~~~la~~ 66 (454)
T cd07118 37 WPRMSGAERAAVLLKVADLIRARRERLALI 66 (454)
T ss_pred cccCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 999999999999998888888888777653
No 115
>PF11521 TFIIE-A_C-term: C-terminal general transcription factor TFIIE alpha; InterPro: IPR021600 TFIIE is compiled of two subunits, alpha and beta. This family of proteins are the C-terminal domain of the alpha subunit of the protein which is the largest subunit and contains several functional domains which are important for basal transcription and cell growth. The C-terminal end of the protein binds directly to the amino-terminal PH domain of p62/Tfb1 (of IIH) which is involved in the recruitment of the general transcription factor IIH to the transcription preinitiation complex. P53 competes for the same binding site as TFIIE alpha which shows their structural similarity. Like p53, TFIIE alpha 336-439 can activate transcription in vivo []. ; PDB: 2RNR_A 2RNQ_A 2JTX_A.
Probab=23.76 E-value=71 Score=19.94 Aligned_cols=30 Identities=17% Similarity=0.252 Sum_probs=19.7
Q ss_pred CHHHHHHHHHhhhcCCChhhhhHHHHHHHHH
Q 033714 65 SVAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95 (113)
Q Consensus 65 ~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~ 95 (113)
...+|+. --++=..|+++||..|++..++.
T Consensus 51 ~~~eVtq-~p~LV~qMT~~EKEaYi~v~Q~~ 80 (86)
T PF11521_consen 51 PYSEVTQ-RPELVAQMTPEEKEAYIQVGQEM 80 (86)
T ss_dssp EHHHHHH--HHHHHHS-HHHHHHHHHHHHHH
T ss_pred ehhhcCc-chHHHHHcCHHHHHHHHHHHHHH
Confidence 4667771 11222479999999999988765
No 116
>TIGR01722 MMSDH methylmalonic acid semialdehyde dehydrogenase. In Bacillus, a highly homologous protein to methylmalonic acid semialdehyde dehydrogenase, groups out from the main MMSDH clade with Listeria and Sulfolobus. This Bacillus protein has been suggested to be located in an iol operon and/or involved in myo-inositol catabolism, converting malonic semialdehyde to acetyl CoA ad CO2. The preceeding enzymes responsible for valine catabolism are present in Bacillus, Listeria, and Sulfolobus.
Probab=23.58 E-value=2.2e+02 Score=22.84 Aligned_cols=37 Identities=11% Similarity=0.143 Sum_probs=28.6
Q ss_pred HHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHH
Q 033714 69 VGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKN 105 (113)
Q Consensus 69 isk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~ 105 (113)
.++.....|..++.++|.............+..++..
T Consensus 46 ~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~ 82 (477)
T TIGR01722 46 SARETFLTWGQTSLAQRTSVLLRYQALLKEHRDEIAE 82 (477)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444567899999999999988887777777776654
No 117
>cd07111 ALDH_F16 Aldehyde dehydrogenase family 16A1-like. Uncharacterized aldehyde dehydrogenase family 16 member A1 (ALDH16A1) and other related sequences are present in this CD. The active site cysteine and glutamate residues are not conserved in the human ALDH16A1 protein sequence.
Probab=23.53 E-value=2.1e+02 Score=23.04 Aligned_cols=35 Identities=9% Similarity=0.173 Sum_probs=27.8
Q ss_pred HHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHH
Q 033714 71 KAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKN 105 (113)
Q Consensus 71 k~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~ 105 (113)
+.....|..++.++|..+...+.....++.+++..
T Consensus 69 ~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~ 103 (480)
T cd07111 69 RTAFESWSALPGHVRARHLYRIARHIQKHQRLFAV 103 (480)
T ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 33456799999999999998888887777777654
No 118
>PLN02174 aldehyde dehydrogenase family 3 member H1
Probab=23.53 E-value=2.1e+02 Score=23.27 Aligned_cols=37 Identities=5% Similarity=-0.197 Sum_probs=30.6
Q ss_pred HHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 033714 70 GKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106 (113)
Q Consensus 70 sk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y 106 (113)
++..-..|..++.++|..+...+.+..+++.+++.+.
T Consensus 19 a~~af~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 55 (484)
T PLN02174 19 LRRSFDDGVTRGYEWRVTQLKKLMIICDNHEPEIVAA 55 (484)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4444567999999999999999999888888888764
No 119
>cd07116 ALDH_ACDHII-AcoD Ralstonia eutrophus NAD+-dependent acetaldehyde dehydrogenase II-like. Included in this CD is the NAD+-dependent, acetaldehyde dehydrogenase II (AcDHII, AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes) eutrophus H16 involved in the catabolism of acetoin and ethanol, and similar proteins, such as, the dimeric dihydrolipoamide dehydrogenase of the acetoin dehydrogenase enzyme system of Klebsiella pneumonia. Also included are sequences similar to the NAD+-dependent chloroacetaldehyde dehydrogenases (AldA and AldB) of Xanthobacter autotrophicus GJ10 which are involved in the degradation of 1,2-dichloroethane. These proteins apparently require RpoN factors for expression.
Probab=23.34 E-value=2.6e+02 Score=22.44 Aligned_cols=38 Identities=21% Similarity=0.233 Sum_probs=29.5
Q ss_pred HHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHH
Q 033714 70 GKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 107 (113)
Q Consensus 70 sk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y~ 107 (113)
++.....|..++.++|..+........+.+..++....
T Consensus 47 A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~ 84 (479)
T cd07116 47 AHAAKEAWGKTSVAERANILNKIADRMEANLEMLAVAE 84 (479)
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34445679999999999999888888888877776543
No 120
>cd07093 ALDH_F8_HMSADH Human aldehyde dehydrogenase family 8 member A1-like. In humans, the aldehyde dehydrogenase family 8 member A1 (ALDH8A1) protein functions to convert 9-cis-retinal to 9-cis-retinoic acid and has a preference for NAD+. Also included in this CD is the 2-hydroxymuconic semialdehyde dehydrogenase (HMSADH) which catalyzes the conversion of 2-hydroxymuconic semialdehyde to 4-oxalocrotonate, a step in the meta cleavage pathway of aromatic hydrocarbons in bacteria. Such HMSADHs seen here are: XylG of the TOL plasmid pWW0 of Pseudomonas putida, TomC of Burkholderia cepacia G4, and AphC of Comamonas testosterone.
Probab=23.26 E-value=2.1e+02 Score=22.59 Aligned_cols=36 Identities=19% Similarity=0.238 Sum_probs=29.0
Q ss_pred HHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHH
Q 033714 70 GKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKN 105 (113)
Q Consensus 70 sk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~ 105 (113)
++.....|..++.++|..+...+.+....+..++..
T Consensus 28 A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~ 63 (455)
T cd07093 28 AKEAFPGWSRMSPAERARILHKVADLIEARADELAL 63 (455)
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444567899999999999998888888888777654
No 121
>TIGR02518 EutH_ACDH acetaldehyde dehydrogenase (acetylating).
Probab=23.24 E-value=2.1e+02 Score=23.23 Aligned_cols=38 Identities=13% Similarity=0.117 Sum_probs=29.6
Q ss_pred HHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHH
Q 033714 68 AVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKN 105 (113)
Q Consensus 68 eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~ 105 (113)
+.++.....|..++.++|............+...++.+
T Consensus 15 ~~A~~A~~~w~~~s~~~R~~iL~~~a~~l~~~~~ela~ 52 (488)
T TIGR02518 15 RSAKVAQKKLANMTQEQIDKIVKAIVDAAYENAVKLAK 52 (488)
T ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 44455567899999999999888777777777777766
No 122
>COG1012 PutA NAD-dependent aldehyde dehydrogenases [Energy production and conversion]
Probab=23.23 E-value=2.1e+02 Score=23.23 Aligned_cols=33 Identities=12% Similarity=0.265 Sum_probs=28.1
Q ss_pred HhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 033714 74 GEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106 (113)
Q Consensus 74 ~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y 106 (113)
...|..++..+|..+.....+..+++.+++...
T Consensus 49 ~~~W~~~~~~eR~~iL~~~a~~l~~~~~ela~~ 81 (472)
T COG1012 49 FEAWSRLSAEERAAILRRIADLLEARAEELAAL 81 (472)
T ss_pred HHHhhhCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 347999999999999999988888888877664
No 123
>PLN02419 methylmalonate-semialdehyde dehydrogenase [acylating]
Probab=23.22 E-value=2.1e+02 Score=24.17 Aligned_cols=37 Identities=8% Similarity=0.072 Sum_probs=30.0
Q ss_pred HHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 033714 70 GKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106 (113)
Q Consensus 70 sk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y 106 (113)
++.....|..++.++|..+...+....+.+..++..-
T Consensus 160 A~~A~~~W~~~~~~eR~~iL~k~a~~L~~~~~ela~~ 196 (604)
T PLN02419 160 AKQAFPLWRNTPITTRQRVMLKFQELIRKNMDKLAMN 196 (604)
T ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3444567999999999999998888888888877654
No 124
>PLN02418 delta-1-pyrroline-5-carboxylate synthase
Probab=23.21 E-value=1.9e+02 Score=24.85 Aligned_cols=40 Identities=13% Similarity=0.182 Sum_probs=33.0
Q ss_pred HHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHH
Q 033714 68 AVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 107 (113)
Q Consensus 68 eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y~ 107 (113)
+.++.....|..++.++|..+...+.....++.+++.+..
T Consensus 301 ~aA~~A~~~W~~~~~~eR~~~L~~~a~~l~~~~~ela~~~ 340 (718)
T PLN02418 301 VAARESSRKLQALSSEERKKILLDVADALEANEELIKAEN 340 (718)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3455566789999999999999988888888888887764
No 125
>TIGR03216 OH_muco_semi_DH 2-hydroxymuconic semialdehyde dehydrogenase. Members of this protein family are 2-hydroxymuconic semialdehyde dehydrogenase. Many aromatic compounds are catabolized by way of the catechol, via the meta-cleavage pathway, to pyruvate and acetyl-CoA. This enzyme performs the second of seven steps in that pathway for catechol degradation.
Probab=22.96 E-value=1.9e+02 Score=23.13 Aligned_cols=30 Identities=17% Similarity=0.221 Sum_probs=25.8
Q ss_pred hcCCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 033714 77 WKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106 (113)
Q Consensus 77 Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y 106 (113)
|..++.++|..+...+......+..++..-
T Consensus 53 w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 82 (481)
T TIGR03216 53 WGKMTVAERADLLYAVADEIERRFDDFLAA 82 (481)
T ss_pred HhhCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 999999999999988888888888777653
No 126
>PF08367 M16C_assoc: Peptidase M16C associated; InterPro: IPR013578 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain appears in eukaryotes as well as bacteria and tends to be found near the C terminus of metalloproteases and related sequences belonging to MEROPS peptidase family M16 (subfamily M16C, clan ME). These include: eupitrilysin, falcilysin, PreP peptidase, CYM1 peptidase and subfamily M16C non-peptidase homologues.; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 2FGE_B 3S5I_A 3S5H_A 3S5M_A 3S5K_A.
Probab=22.85 E-value=1.6e+02 Score=21.34 Aligned_cols=32 Identities=16% Similarity=0.087 Sum_probs=25.7
Q ss_pred HHHHHHHHHhhhcCCChhhhhHHHHHHHHHHH
Q 033714 66 VAAVGKAGGEKWKSMSEADKAPYVAKAEKRKV 97 (113)
Q Consensus 66 ~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~ 97 (113)
..+....|.+.+..||+++++...+.+.+.++
T Consensus 12 ~~~e~~~L~~~k~~Ls~~e~~~i~~~~~~L~~ 43 (248)
T PF08367_consen 12 EEEEKEKLAAYKASLSEEEKEKIIEQTKELKE 43 (248)
T ss_dssp HHHHHHHHHHHHHCS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHH
Confidence 34677889999999999999999988887643
No 127
>PRK09406 gabD1 succinic semialdehyde dehydrogenase; Reviewed
Probab=22.81 E-value=1.8e+02 Score=23.22 Aligned_cols=37 Identities=11% Similarity=0.100 Sum_probs=29.3
Q ss_pred HHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 033714 70 GKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106 (113)
Q Consensus 70 sk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y 106 (113)
++.....|..++.++|..+...+......+.+++..-
T Consensus 32 A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 68 (457)
T PRK09406 32 AHARFRDYRTTTFAQRARWANAAADLLEAEADQVAAL 68 (457)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHH
Confidence 4444567999999999999988888888887777653
No 128
>cd07128 ALDH_MaoC-N N-terminal domain of the monoamine oxidase C dehydratase. The N-terminal domain of the MaoC dehydratase, a monoamine oxidase regulatory protein. Orthologs of MaoC include PaaZ (Escherichia coli) and PaaN (Pseudomonas putida), which are putative ring-opening enzymes of the aerobic phenylacetic acid (PA) catabolic pathway. The C-terminal domain of MaoC has sequence similarity to enoyl-CoA hydratase. Also included in this CD is a novel Burkholderia xenovorans LB400 ALDH of the aerobic benzoate oxidation (box) pathway. This pathway involves first the synthesis of a CoA thio-esterified aromatic acid, with subsequent dihydroxylation and cleavage steps, yielding the CoA thio-esterified aliphatic aldehyde, 3,4-dehydroadipyl-CoA semialdehyde, which is further converted into its corresponding CoA acid by the Burkholderia LB400 ALDH.
Probab=22.78 E-value=1.9e+02 Score=23.71 Aligned_cols=31 Identities=13% Similarity=0.214 Sum_probs=27.4
Q ss_pred hhhcCCChhhhhHHHHHHHHHHHHHHHHHHH
Q 033714 75 EKWKSMSEADKAPYVAKAEKRKVEYEKDMKN 105 (113)
Q Consensus 75 ~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~ 105 (113)
..|..++.++|..+...+....+++.+++..
T Consensus 51 ~~W~~~~~~~Ra~~L~~~a~~l~~~~~~la~ 81 (513)
T cd07128 51 PALRALTFHERAAMLKALAKYLMERKEDLYA 81 (513)
T ss_pred chhhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999998888888888765
No 129
>cd07107 ALDH_PhdK-like Nocardioides 2-carboxybenzaldehyde dehydrogenase, PhdK-like. Nocardioides sp. strain KP72-carboxybenzaldehyde dehydrogenase (PhdK), an enzyme involved in phenanthrene degradation, and other similar sequences, are present in this CD.
Probab=22.61 E-value=2.2e+02 Score=22.54 Aligned_cols=36 Identities=14% Similarity=0.299 Sum_probs=28.6
Q ss_pred HHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHH
Q 033714 70 GKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKN 105 (113)
Q Consensus 70 sk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~ 105 (113)
++.....|..++.++|..+...+....+.+..++..
T Consensus 28 A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~ 63 (456)
T cd07107 28 ARAAFPEWRATTPLERARMLRELATRLREHAEELAL 63 (456)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 444567899999999999998888887777777654
No 130
>cd08317 Death_ank Death domain associated with Ankyrins. Death Domain (DD) associated with Ankyrins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. Ankyrins function as adaptor proteins and they interact, through ANK repeats, with structurally diverse membrane proteins, including ion channels/pumps, calcium release channels, and cell adhesion molecules. They play critical roles in the proper expression and membrane localization of these proteins. In mammals, this family includes ankyrin-R for restricted (or ANK1), ankyrin-B for broadly expressed (or ANK2) and ankyrin-G for general or giant (or ANK3). They are expressed in different combinations in many tissues and play non-overlapping functions. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-associati
Probab=22.51 E-value=44 Score=20.24 Aligned_cols=19 Identities=16% Similarity=0.452 Sum_probs=15.6
Q ss_pred CCHHHHHHHHHhhhcCCCh
Q 033714 64 KSVAAVGKAGGEKWKSMSE 82 (113)
Q Consensus 64 ~~~~eisk~l~~~Wk~ls~ 82 (113)
..+..|+..||..|+.|-.
T Consensus 5 ~~l~~ia~~lG~dW~~LAr 23 (84)
T cd08317 5 IRLADISNLLGSDWPQLAR 23 (84)
T ss_pred chHHHHHHHHhhHHHHHHH
Confidence 4788999999999987653
No 131
>COG4281 ACB Acyl-CoA-binding protein [Lipid metabolism]
Probab=22.49 E-value=88 Score=19.34 Aligned_cols=61 Identities=21% Similarity=0.412 Sum_probs=35.7
Q ss_pred CCCCCCCH-----HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCC----hhhhhHHHHHHHHHHHHH
Q 033714 37 KPKRPASA-----FFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS----EADKAPYVAKAEKRKVEY 99 (113)
Q Consensus 37 ~PKrP~sa-----y~lF~~~~r~~~~~~~p~~~~~~eisk~l~~~Wk~ls----~~eK~~y~~~a~~~k~~y 99 (113)
-+.+|.|- |.||-+..-...-.+-|+.. .-+.+---+.|-.|- ++-++.|+...++.+..|
T Consensus 16 L~~kP~~d~LLkLYAL~KQ~s~GD~~~ekPG~~--d~~gr~K~eAW~~LKGksqedA~qeYialVeeLkak~ 85 (87)
T COG4281 16 LSEKPSNDELLKLYALFKQGSVGDNDGEKPGFF--DIVGRYKYEAWAGLKGKSQEDARQEYIALVEELKAKY 85 (87)
T ss_pred hccCCCcHHHHHHHHHHHhccccccCCCCCCcc--ccccchhHHHHhhccCccHHHHHHHHHHHHHHHHhhc
Confidence 35567665 66676655555555566642 223333457787664 455667777777766554
No 132
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=22.22 E-value=2.5e+02 Score=20.54 Aligned_cols=46 Identities=15% Similarity=0.099 Sum_probs=34.8
Q ss_pred CHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 033714 65 SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 110 (113)
Q Consensus 65 ~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y~~~~ 110 (113)
....++..|++....+.++.+..|.+.++....+-..--..|.+.+
T Consensus 103 n~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~ 148 (264)
T cd01020 103 TMSKVANALADALVKADPDNKKYYQANAKKFVASLKPLAAKIAELS 148 (264)
T ss_pred HHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888999999999999999988887777665555555543
No 133
>PF09655 Nitr_red_assoc: Conserved nitrate reductase-associated protein (Nitr_red_assoc); InterPro: IPR013481 Proteins in this entry are found in the Cyanobacteria, and are mostly encoded near nitrate reductase and molybdopterin biosynthesis genes. Molybdopterin guanine dinucleotide is a cofactor for nitrate reductase. These proteins are sometimes annotated as nitrate reductase-associated proteins, though their function is unknown.
Probab=22.16 E-value=1.3e+02 Score=20.62 Aligned_cols=34 Identities=15% Similarity=0.394 Sum_probs=25.2
Q ss_pred hhhcCCChhhhhHHHHHH---HHHHHHHHHHHHHHHH
Q 033714 75 EKWKSMSEADKAPYVAKA---EKRKVEYEKDMKNYNR 108 (113)
Q Consensus 75 ~~Wk~ls~~eK~~y~~~a---~~~k~~y~~~~~~y~~ 108 (113)
..|..||.+||+.-.+.. ..+.+.|...+.+...
T Consensus 33 ~~W~~l~~~eRq~Lv~~pc~t~~ei~~yr~~L~~li~ 69 (144)
T PF09655_consen 33 SHWQQLSQEERQQLVDLPCDTPEEIQNYREFLQELIR 69 (144)
T ss_pred HHHhcCCHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 679999999999988765 4455677776666544
No 134
>TIGR02299 HpaE 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase. This model represents the dehydrogenase responsible for the conversion of 5-carboxymethyl-2-hydroxymuconate semialdehyde to 5-carboxymethyl-2-hydroxymuconate (a tricarboxylic acid). This is the step in the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate following the oxidative opening of the aromatic ring.
Probab=21.90 E-value=2.3e+02 Score=22.73 Aligned_cols=36 Identities=14% Similarity=0.320 Sum_probs=28.1
Q ss_pred HHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHH
Q 033714 70 GKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKN 105 (113)
Q Consensus 70 sk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~ 105 (113)
++.....|..++.++|......+....+.+..++.+
T Consensus 47 A~~A~~~w~~~~~~~R~~iL~~~a~~l~~~~~~l~~ 82 (488)
T TIGR02299 47 AKEAFKRWAELKAAERKRYLHKIADLIEQHADEIAV 82 (488)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 344556899999999999988888877777766654
No 135
>PRK05439 pantothenate kinase; Provisional
Probab=21.89 E-value=2.4e+02 Score=21.69 Aligned_cols=54 Identities=13% Similarity=0.108 Sum_probs=40.3
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCC-hhhhhHHHHHHHHH
Q 033714 41 PASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS-EADKAPYVAKAEKR 95 (113)
Q Consensus 41 P~say~lF~~~~r~~~~~~~p~~~~~~eisk~l~~~Wk~ls-~~eK~~y~~~a~~~ 95 (113)
..++|..|..+.+..+....|-.++..|+.. |...=..++ ++....|.-+|...
T Consensus 6 ~~~~~~~~~r~~w~~l~~~~~~~l~~~~~~~-l~~~~~~~~~~~v~~iy~plarli 60 (311)
T PRK05439 6 EFSPYLEFSREQWAALRDSTPLTLTEEELER-LRGLNDPISLEEVAEIYLPLSRLL 60 (311)
T ss_pred CCCCceeECHHHHHHHHhcCCCCCCHHHHHH-hhcCCCCCCHHHHHHHHHHHHHHH
Confidence 4789999999999999988887667777766 444444555 56677787777654
No 136
>TIGR03374 ABALDH 1-pyrroline dehydrogenase. Members of this protein family are 1-pyrroline dehydrogenase (1.5.1.35), also called gamma-aminobutyraldehyde dehydrogenase. This enzyme can follow putrescine transaminase (EC 2.6.1.82) for a two-step conversion of putrescine to gamma-aminobutyric acid (GABA). The member from Escherichia coli is characterized as a homotetramer that binds one NADH per momomer. This enzyme belongs to the medium-chain aldehyde dehydrogenases, and is quite similar in sequence to the betaine aldehyde dehydrogenase (EC 1.2.1.8) family.
Probab=21.84 E-value=2.3e+02 Score=22.78 Aligned_cols=37 Identities=14% Similarity=0.155 Sum_probs=29.5
Q ss_pred HHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 033714 70 GKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106 (113)
Q Consensus 70 sk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y 106 (113)
++..-..|..++.++|..+...+.+..+.+..++...
T Consensus 47 a~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 83 (472)
T TIGR03374 47 ADAAFAEWGQTTPKARAECLLKLADVIEENAQVFAEL 83 (472)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3344467999999999999988888888888777653
No 137
>TIGR00407 proA gamma-glutamyl phosphate reductase. The prosite motif begins at residue 332 of the seed alignment although not all of the members of the family exactly obey the motif.
Probab=21.72 E-value=1.2e+02 Score=23.98 Aligned_cols=34 Identities=12% Similarity=0.051 Sum_probs=28.3
Q ss_pred HHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 033714 73 GGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106 (113)
Q Consensus 73 l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y 106 (113)
....|..++.++|..+...+....+++..++.+-
T Consensus 4 A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~ 37 (398)
T TIGR00407 4 AANILAQLSTAEKNDALSKIADGLEAQAPAILAA 37 (398)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHhChHHHHHH
Confidence 4467999999999999998888888888776554
No 138
>cd07142 ALDH_F2BC Arabidosis aldehyde dehydrogenase family 2 B4, B7, C4-like. Included in this CD is the Arabidosis aldehyde dehydrogenase family 2 members B4 and B7 (EC=1.2.1.3), which are mitochondrial homotetramers that oxidize acetaldehyde and glycolaldehyde, but not L-lactaldehyde. Also in this group, is the Arabidosis cytosolic, homotetramer ALDH2C4 (EC=1.2.1.3), an enzyme involved in the oxidation of sinapalehyde and coniferaldehyde.
Probab=21.68 E-value=3.1e+02 Score=21.95 Aligned_cols=30 Identities=7% Similarity=0.232 Sum_probs=25.5
Q ss_pred hcCCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 033714 77 WKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106 (113)
Q Consensus 77 Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y 106 (113)
|..++.++|..+...+......+..++.+.
T Consensus 59 w~~~~~~~R~~~L~~~a~~l~~~~~~la~~ 88 (476)
T cd07142 59 WPRMTGYERSRILLRFADLLEKHADELAAL 88 (476)
T ss_pred hhhCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 999999999999988888888887777654
No 139
>PLN02203 aldehyde dehydrogenase
Probab=21.65 E-value=2.4e+02 Score=22.94 Aligned_cols=40 Identities=10% Similarity=-0.124 Sum_probs=31.6
Q ss_pred HHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHH
Q 033714 68 AVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 107 (113)
Q Consensus 68 eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y~ 107 (113)
+.++..-..|..++..+|..+........+.+.+++.+-.
T Consensus 13 ~~a~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~ 52 (484)
T PLN02203 13 AELRETYESGRTRSLEWRKSQLKGLLRLLKDNEEAIFKAL 52 (484)
T ss_pred HHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3345555779999999999999988888888888776643
No 140
>PRK09457 astD succinylglutamic semialdehyde dehydrogenase; Reviewed
Probab=21.63 E-value=2.5e+02 Score=22.61 Aligned_cols=36 Identities=14% Similarity=0.254 Sum_probs=28.3
Q ss_pred HHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHH
Q 033714 70 GKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKN 105 (113)
Q Consensus 70 sk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~ 105 (113)
++.....|..++.++|..+...+.+...++..++.+
T Consensus 46 A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~ 81 (487)
T PRK09457 46 ARAAFPAWARLSFEERQAIVERFAALLEENKEELAE 81 (487)
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 344456799999999999998888887777776654
No 141
>cd07134 ALDH_AlkH-like Pseudomonas putida Aldehyde dehydrogenase AlkH-like. Aldehyde dehydrogenase AlkH (locus name P12693, EC=1.2.1.3) of the alkBFGHJKL operon that allows Pseudomonas putida to metabolize alkanes and the aldehyde dehydrogenase AldX of Bacillus subtilis (locus P46329, EC=1.2.1.3), and similar sequences, are present in this CD.
Probab=21.62 E-value=2.6e+02 Score=22.16 Aligned_cols=38 Identities=11% Similarity=0.166 Sum_probs=29.6
Q ss_pred HHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHH
Q 033714 68 AVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKN 105 (113)
Q Consensus 68 eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~ 105 (113)
+.++..-..|..++..+|......+.+..+.+..++.+
T Consensus 5 ~~a~~a~~~W~~~~~~~R~~~L~~~a~~l~~~~~el~~ 42 (433)
T cd07134 5 AAQQAHALALRASTAAERIAKLKRLKKAILARREEIIA 42 (433)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667899999999999998888887777776654
No 142
>KOG2880 consensus SMAD6 interacting protein AMSH, contains JAB/MPN/Mov34 domain [Signal transduction mechanisms]
Probab=21.56 E-value=4.3e+02 Score=21.21 Aligned_cols=65 Identities=17% Similarity=0.260 Sum_probs=33.9
Q ss_pred CCHHHHHHHH---HHHHHHHhCCCCCCHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 033714 42 ASAFFVFMEE---FREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 110 (113)
Q Consensus 42 ~say~lF~~~---~r~~~~~~~p~~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y~~~~ 110 (113)
-|||+||.+= ..+.+ ..||+. ..+-...-..-+.|-++.-..-.++..+...+|..+..+|...-
T Consensus 52 enafvLy~ry~tLfiEki-pkHrDy---~s~k~ek~d~~~klk~~~~p~~deL~~~ll~rY~~eyn~y~~~K 119 (424)
T KOG2880|consen 52 ENAFVLYLRYITLFIEKI-PKHRDY---RSVKPEKEDIRKKLKEEAFPRIDELKAKLLKRYNVEYNEYDHSK 119 (424)
T ss_pred chhhhHHHHHHHHHHHhc-ccCcch---hhhchhHHHHHHHHHHHhhhhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3677776432 22222 245552 22323333333334455555555666777788888877776543
No 143
>cd07140 ALDH_F1L_FTFDH 10-formyltetrahydrofolate dehydrogenase, ALDH family 1L. 10-formyltetrahydrofolate dehydrogenase (FTHFDH, EC=1.5.1.6), also known as aldehyde dehydrogenase family 1 member L1 (ALDH1L1) in humans, is a multi-domain homotetramer with an N-terminal formyl transferase domain and a C-terminal ALDH domain. FTHFDH catalyzes an NADP+-dependent dehydrogenase reaction resulting in the conversion of 10-formyltetrahydrofolate to tetrahydrofolate and CO2. The ALDH domain is also capable of the oxidation of short chain aldehydes to their corresponding acids.
Probab=21.40 E-value=3.2e+02 Score=22.08 Aligned_cols=31 Identities=13% Similarity=0.336 Sum_probs=26.1
Q ss_pred hhcCCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 033714 76 KWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106 (113)
Q Consensus 76 ~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y 106 (113)
.|..++.++|..+...+....+.+..++..-
T Consensus 60 ~W~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 90 (486)
T cd07140 60 EWGKMNARDRGRLMYRLADLMEEHQEELATI 90 (486)
T ss_pred chhcCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4999999999999988888888888777654
No 144
>cd07103 ALDH_F5_SSADH_GabD Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like. Succinate-semialdehyde dehydrogenase, mitochondrial (SSADH, GabD, EC=1.2.1.24) catalyzes the NAD+-dependent oxidation of succinate semialdehyde (SSA) to succinate. This group includes the human aldehyde dehydrogenase family 5 member A1 (ALDH5A1) which is a mitochondrial homotetramer that converts SSA to succinate in the last step of 4-aminobutyric acid (GABA) catabolism. This CD also includes the Arabidopsis SSADH gene product ALDH5F1. Mutations in this gene result in the accumulation of H2O2, suggesting a role in plant defense against the environmental stress of elevated reactive oxygen species.
Probab=21.26 E-value=2.6e+02 Score=22.02 Aligned_cols=35 Identities=14% Similarity=0.270 Sum_probs=27.2
Q ss_pred HHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHH
Q 033714 71 KAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKN 105 (113)
Q Consensus 71 k~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~ 105 (113)
+.....|..++.++|......+......+..++.+
T Consensus 29 ~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~ 63 (451)
T cd07103 29 AAAFKTWRKTTARERAAILRRWADLIRERAEDLAR 63 (451)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34457899999999999888888877777766544
No 145
>PF13945 NST1: Salt tolerance down-regulator
Probab=21.09 E-value=2.2e+02 Score=20.39 Aligned_cols=27 Identities=26% Similarity=0.322 Sum_probs=21.5
Q ss_pred CHHHHHHHHHhhhcCCChhhhhHHHHH
Q 033714 65 SVAAVGKAGGEKWKSMSEADKAPYVAK 91 (113)
Q Consensus 65 ~~~eisk~l~~~Wk~ls~~eK~~y~~~ 91 (113)
+..+....|-+.|-.|+++||...+..
T Consensus 99 Ss~eEre~LkeFW~SL~eeERr~LVkI 125 (190)
T PF13945_consen 99 SSQEEREKLKEFWESLSEEERRSLVKI 125 (190)
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHh
Confidence 344667789999999999999876654
No 146
>TIGR01237 D1pyr5carbox2 delta-1-pyrroline-5-carboxylate dehydrogenase, group 2, putative. This enzyme is the second of two in the degradation of proline to glutamate. This model represents one of several related branches of delta-1-pyrroline-5-carboxylate dehydrogenase. Members of this branch may be associated with proline dehydrogenase (the other enzyme of the pathway from proline to glutamate) but have not been demonstrated experimentally. The branches are not as closely related to each other as some distinct aldehyde dehydrogenases are to some; separate models were built to let each model describe a set of equivalogs.
Probab=20.98 E-value=2.1e+02 Score=23.27 Aligned_cols=36 Identities=19% Similarity=0.265 Sum_probs=28.2
Q ss_pred HHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHH
Q 033714 70 GKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKN 105 (113)
Q Consensus 70 sk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~ 105 (113)
++.....|..++.++|..+...+......+..++..
T Consensus 78 A~~A~~~W~~~~~~~R~~~L~~~a~~l~~~~~~la~ 113 (511)
T TIGR01237 78 AKKAFEAWKKTPVRERAGILRKAAAIMERRRHELNA 113 (511)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHH
Confidence 344456799999999999998888887877766654
No 147
>PHA03102 Small T antigen; Reviewed
Probab=20.68 E-value=1.4e+02 Score=20.53 Aligned_cols=37 Identities=16% Similarity=0.165 Sum_probs=26.3
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCChhhhh
Q 033714 50 EEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKA 86 (113)
Q Consensus 50 ~~~r~~~~~~~p~~~~~~eisk~l~~~Wk~ls~~eK~ 86 (113)
+..|...+.-||+.-...+..+.|.+.|..|++..+.
T Consensus 26 kAYr~la~~~HPDkgg~~e~~k~in~Ay~~L~d~~~r 62 (153)
T PHA03102 26 KAYLRKCLEFHPDKGGDEEKMKELNTLYKKFRESVKS 62 (153)
T ss_pred HHHHHHHHHHCcCCCchhHHHHHHHHHHHHHhhHHHh
Confidence 4456666777998434567888888999888866543
No 148
>cd07125 ALDH_PutA-P5CDH Delta(1)-pyrroline-5-carboxylate dehydrogenase, PutA. The proline catabolic enzymes of the aldehyde dehydrogenase (ALDH) protein superfamily, proline dehydrogenase and Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH, (EC=1.5.1.12 )), catalyze the two-step oxidation of proline to glutamate; P5CDH catalyzes the oxidation of glutamate semialdehyde, utilizing NAD+ as the electron acceptor. In some bacteria, the two enzymes are fused into the bifunctional flavoenzyme, proline utilization A (PutA) These enzymes play important roles in cellular redox control, superoxide generation, and apoptosis. In certain prokaryotes such as Escherichia coli, PutA is also a transcriptional repressor of the proline utilization genes.
Probab=20.51 E-value=2.5e+02 Score=22.83 Aligned_cols=36 Identities=14% Similarity=0.181 Sum_probs=28.3
Q ss_pred HHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHH
Q 033714 70 GKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKN 105 (113)
Q Consensus 70 sk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~ 105 (113)
++.....|..++.++|..+...+.....++..++..
T Consensus 78 A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~ 113 (518)
T cd07125 78 AAAAFAGWSATPVEERAEILEKAADLLEANRGELIA 113 (518)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 444557799999999999988888877777776654
No 149
>TIGR01236 D1pyr5carbox1 delta-1-pyrroline-5-carboxylate dehydrogenase, group 1. This model represents one of two related branches of delta-1-pyrroline-5-carboxylate dehydrogenase. The two branches are not as closely related to each other as some aldehyde dehydrogenases are to this branch, and separate models are built for this reason. The enzyme is the second of two in the degradation of proline to glutamate.
Probab=20.50 E-value=2.1e+02 Score=23.56 Aligned_cols=36 Identities=17% Similarity=0.303 Sum_probs=27.6
Q ss_pred HHHHHhhhcCCChhhhhHHHHHHHHHHH-HHHHHHHH
Q 033714 70 GKAGGEKWKSMSEADKAPYVAKAEKRKV-EYEKDMKN 105 (113)
Q Consensus 70 sk~l~~~Wk~ls~~eK~~y~~~a~~~k~-~y~~~~~~ 105 (113)
++.....|+.++..+|..+...+....+ ++..++..
T Consensus 78 A~~a~~~W~~~~~~~R~~~L~k~a~~l~~~~~~~la~ 114 (533)
T TIGR01236 78 ALDAKKDWSALPFYDRAAIFLKAADLLSGPYREEILA 114 (533)
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHHHhhcHHHHHH
Confidence 3444568999999999999888888777 47666554
No 150
>PRK09407 gabD2 succinic semialdehyde dehydrogenase; Reviewed
Probab=20.49 E-value=2.7e+02 Score=22.76 Aligned_cols=36 Identities=11% Similarity=0.312 Sum_probs=28.2
Q ss_pred HHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHH
Q 033714 70 GKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKN 105 (113)
Q Consensus 70 sk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~ 105 (113)
++.....|..++.++|......+.+...++..++.+
T Consensus 63 A~~A~~~w~~~~~~~R~~iL~~~a~~l~~~~~ela~ 98 (524)
T PRK09407 63 ARAAQRAWAATPVRERAAVLLRFHDLVLENREELLD 98 (524)
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 444567899999999999988888877777766654
No 151
>cd07083 ALDH_P5CDH ALDH subfamily NAD+-dependent delta(1)-pyrroline-5-carboxylate dehydrogenase-like. ALDH subfamily of the NAD+-dependent, delta(1)-pyrroline-5-carboxylate dehydrogenases (P5CDH, EC=1.5.1.12). The proline catabolic enzymes, proline dehydrogenase and P5CDH catalyze the two-step oxidation of proline to glutamate. P5CDH catalyzes the oxidation of glutamate semialdehyde, utilizing NAD+ as the electron acceptor. In some bacteria, the two enzymes are fused into the bifunctional flavoenzyme, proline utilization A (PutA). These enzymes play important roles in cellular redox control, superoxide generation, and apoptosis. In certain prokaryotes such as Escherichia coli, PutA is also a transcriptional repressor of the proline utilization genes. Monofunctional enzyme sequences such as those seen in the Bacillus RocA P5CDH are also present in this subfamily as well as the human ALDH4A1 P5CDH and the Drosophila Aldh17 P5CDH.
Probab=20.36 E-value=2.2e+02 Score=23.04 Aligned_cols=36 Identities=19% Similarity=0.271 Sum_probs=27.6
Q ss_pred HHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHH
Q 033714 70 GKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKN 105 (113)
Q Consensus 70 sk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~ 105 (113)
++.....|..++.++|..+...+....+.+.+++..
T Consensus 64 A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~ 99 (500)
T cd07083 64 AWAAFKTWKDWPQEDRARLLLKAADLLRRRRRELIA 99 (500)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 344456799999999999988888877777666554
No 152
>cd07149 ALDH_y4uC Uncharacterized ALDH (y4uC) with similarity to Tortula ruralis aldehyde dehydrogenase ALDH21A1. Uncharacterized aldehyde dehydrogenase (ORF name y4uC) with sequence similarity to the moss Tortula ruralis aldehyde dehydrogenase ALDH21A1 (RNP123) believed to play an important role in the detoxification of aldehydes generated in response to desiccation- and salinity-stress, and similar sequences are included in this CD.
Probab=20.32 E-value=2.6e+02 Score=21.97 Aligned_cols=37 Identities=19% Similarity=0.318 Sum_probs=28.5
Q ss_pred HHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHH
Q 033714 69 VGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKN 105 (113)
Q Consensus 69 isk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~ 105 (113)
.++.....|..++.++|..+...+......+.+++.+
T Consensus 29 ~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~ 65 (453)
T cd07149 29 AAKEGAKEMKSLPAYERAEILERAAQLLEERREEFAR 65 (453)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3445567899999999999988888777777766654
No 153
>PRK14296 chaperone protein DnaJ; Provisional
Probab=20.17 E-value=2e+02 Score=22.47 Aligned_cols=41 Identities=17% Similarity=0.138 Sum_probs=27.5
Q ss_pred HHHHHHHHhCCCCC---CHHHHHHHHHhhhcCCChhhhhHHHHH
Q 033714 51 EFREQYKKDHPKNK---SVAAVGKAGGEKWKSMSEADKAPYVAK 91 (113)
Q Consensus 51 ~~r~~~~~~~p~~~---~~~eisk~l~~~Wk~ls~~eK~~y~~~ 91 (113)
..|...+.-||+.- ...+-.+.|.+.|.-|++++|..-.|.
T Consensus 24 ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~~YD~ 67 (372)
T PRK14296 24 AYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQYDQ 67 (372)
T ss_pred HHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhhhhhh
Confidence 34444456688731 245777889999999998886654444
Done!