Query 033714
Match_columns 113
No_of_seqs 203 out of 1035
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 08:43:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033714.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033714hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2co9_A Thymus high mobility gr 100.0 4E-28 1.4E-32 156.4 12.2 86 25-111 5-90 (102)
2 2eqz_A High mobility group pro 99.9 8.5E-27 2.9E-31 145.8 11.5 80 28-107 6-86 (86)
3 1k99_A Upstream binding factor 99.9 3.2E-27 1.1E-31 151.5 7.8 81 29-110 2-82 (99)
4 2crj_A SWI/SNF-related matrix- 99.9 2.4E-26 8E-31 145.5 10.5 79 32-111 2-80 (92)
5 1hme_A High mobility group pro 99.9 4.5E-27 1.5E-31 144.0 6.6 76 32-108 1-76 (77)
6 2lhj_A High mobility group pro 99.9 2.5E-27 8.6E-32 151.3 5.5 83 27-110 12-96 (97)
7 1cg7_A Protein (NON histone pr 99.9 1.8E-27 6.3E-32 150.9 4.8 83 27-110 10-92 (93)
8 2e6o_A HMG box-containing prot 99.9 9.9E-27 3.4E-31 145.9 7.1 77 30-107 10-86 (87)
9 2cs1_A PMS1 protein homolog 1; 99.9 3.9E-26 1.3E-30 144.5 8.4 78 32-110 2-79 (92)
10 1wgf_A Upstream binding factor 99.9 9.3E-27 3.2E-31 146.9 5.3 79 25-104 8-86 (90)
11 3nm9_A HMG-D, high mobility gr 99.9 2.3E-25 7.7E-30 135.4 9.5 72 35-109 1-72 (73)
12 1hry_A Human SRY; DNA, DNA-bin 99.9 7.7E-26 2.6E-30 138.2 6.2 73 34-107 1-73 (76)
13 1aab_A High mobility group pro 99.9 4.4E-26 1.5E-30 141.6 4.9 78 32-109 2-80 (83)
14 1wxl_A Single-strand recogniti 99.9 3E-25 1E-29 134.8 6.8 72 35-109 1-72 (73)
15 1j46_A SRY, sex-determining re 99.9 7E-25 2.4E-29 136.8 8.1 74 34-108 1-74 (85)
16 2gzk_A Sex-determining region 99.9 1.4E-24 4.7E-29 149.0 10.3 80 28-108 79-158 (159)
17 1ckt_A High mobility group 1 p 99.9 5.9E-25 2E-29 132.6 7.4 70 37-106 1-71 (71)
18 4a3n_A Transcription factor SO 99.9 3.7E-25 1.3E-29 133.3 5.7 71 36-107 1-71 (71)
19 1v64_A Nucleolar transcription 99.9 3.1E-24 1.1E-28 139.6 9.6 79 27-110 6-85 (108)
20 1wz6_A HMG-box transcription f 99.9 3.3E-25 1.1E-29 137.3 4.5 75 33-108 3-77 (82)
21 4euw_A Transcription factor SO 99.9 1.3E-24 4.4E-29 140.9 7.3 76 31-107 23-98 (106)
22 3f27_D Transcription factor SO 99.9 1.4E-24 4.8E-29 134.6 6.7 73 34-107 3-75 (83)
23 1gt0_D Transcription factor SO 99.9 2E-24 7E-29 133.1 7.4 72 36-108 1-72 (80)
24 2lef_A LEF-1 HMG, protein (lym 99.9 3.2E-24 1.1E-28 134.0 7.8 71 36-107 1-71 (86)
25 2yrq_A High mobility group pro 99.9 8.2E-24 2.8E-28 147.1 10.5 80 29-109 93-172 (173)
26 1i11_A Transcription factor SO 99.9 2.4E-24 8.2E-29 133.1 5.9 73 35-108 2-74 (81)
27 3u2b_C Transcription factor SO 99.9 2.9E-24 1E-28 131.9 6.3 71 36-107 1-71 (79)
28 1l8y_A Upstream binding factor 99.9 6.6E-24 2.3E-28 134.0 7.9 74 36-111 3-76 (91)
29 3fgh_A Transcription factor A, 99.9 9.9E-24 3.4E-28 126.1 6.7 66 36-106 1-66 (67)
30 2yrq_A High mobility group pro 99.9 8.9E-23 3E-27 141.8 10.0 81 28-108 6-87 (173)
31 1v63_A Nucleolar transcription 99.9 1.4E-22 4.8E-27 130.3 9.7 74 34-110 5-78 (101)
32 2d7l_A WD repeat and HMG-box D 99.9 1.8E-22 6.3E-27 125.1 6.3 61 34-95 2-63 (81)
33 3tmm_A Transcription factor A, 99.9 2.5E-22 8.7E-27 146.1 7.8 78 31-109 35-112 (238)
34 3tq6_A Transcription factor A, 99.9 1.4E-21 4.6E-26 140.3 8.6 75 34-109 6-80 (214)
35 2cto_A Novel protein; high mob 99.8 8E-22 2.8E-26 125.1 4.2 70 32-104 5-77 (93)
36 3tq6_A Transcription factor A, 99.8 2.7E-22 9.1E-27 144.0 0.7 77 29-110 106-182 (214)
37 2yuk_A Myeloid/lymphoid or mix 99.8 1.4E-22 4.7E-27 127.8 -1.0 69 29-102 14-84 (90)
38 3tmm_A Transcription factor A, 99.8 4.5E-22 1.6E-26 144.8 0.6 77 29-110 138-214 (238)
39 2gzk_A Sex-determining region 99.8 1.9E-19 6.5E-24 123.3 6.7 72 35-107 2-73 (159)
40 2qgu_A Probable signal peptide 80.9 1.3 4.6E-05 30.8 3.3 43 65-107 73-117 (211)
41 3u65_B TP33 protein; tetratric 40.0 51 0.0018 23.9 5.1 24 74-97 234-257 (328)
42 3o39_A Periplasmic protein rel 38.7 37 0.0013 21.1 3.6 27 68-94 79-105 (108)
43 2lkw_A Membrane fusion protein 36.0 10 0.00036 17.2 0.5 11 36-46 9-19 (26)
44 2yua_A Williams-beuren syndrom 31.9 71 0.0024 18.9 4.1 39 50-88 36-78 (99)
45 3fxb_A Trap dicarboxylate tran 31.8 48 0.0017 23.9 3.8 24 74-97 231-254 (326)
46 2xwv_A Sialic acid-binding per 31.5 78 0.0027 22.6 4.9 22 74-95 220-241 (312)
47 3itf_A Periplasmic adaptor pro 30.7 65 0.0022 21.0 3.9 31 68-98 107-137 (145)
48 3epy_A Acyl-COA-binding domain 29.4 61 0.0021 19.3 3.3 59 39-99 20-87 (89)
49 2o37_A Protein SIS1; HSP40, J- 28.5 74 0.0025 18.5 3.6 38 50-87 27-65 (92)
50 3iox_A AGI/II, PA; alpha helix 28.4 40 0.0014 26.6 2.9 22 92-113 71-92 (497)
51 2wme_A BADH, betaine aldehyde 28.0 66 0.0023 24.9 4.2 36 71-106 54-89 (490)
52 1o20_A Gamma-glutamyl phosphat 27.6 98 0.0033 23.3 5.0 37 70-106 23-59 (427)
53 2wh5_A Acyl-COA-binding domain 27.3 57 0.0019 20.1 3.0 62 40-103 29-99 (106)
54 2pfz_A Putative exported prote 27.0 97 0.0033 21.8 4.7 22 74-95 214-235 (301)
55 3mhp_C TIC62_peptide, ferredox 26.6 8.1 0.00028 18.0 -0.8 11 38-48 2-12 (26)
56 2cb8_A Acyl-COA-binding protei 26.6 71 0.0024 18.8 3.3 59 39-99 18-85 (87)
57 4dng_A Uncharacterized aldehyd 25.8 1.1E+02 0.0037 23.5 5.0 36 70-105 53-88 (485)
58 2w8n_A Succinate-semialdehyde 25.4 1.1E+02 0.0037 23.6 4.9 36 71-106 58-93 (487)
59 2o2p_A Formyltetrahydrofolate 25.1 1.2E+02 0.004 23.6 5.1 31 76-106 91-121 (517)
60 1vlu_A Gamma-glutamyl phosphat 25.0 1.1E+02 0.0038 23.4 4.9 37 70-106 23-59 (468)
61 3my7_A Alcohol dehydrogenase/a 24.7 1.2E+02 0.004 23.0 5.0 36 70-105 16-51 (452)
62 4f3x_A Putative aldehyde dehyd 24.7 1.2E+02 0.004 23.5 5.0 36 71-106 72-107 (498)
63 3ifg_A Succinate-semialdehyde 24.6 1.1E+02 0.0036 23.6 4.7 36 71-106 60-95 (484)
64 3nm8_A Tyrosinase; TYPE3 coppe 24.5 46 0.0016 24.4 2.5 24 74-97 8-31 (303)
65 3ty7_A Putative aldehyde dehyd 24.2 1.1E+02 0.0038 23.4 4.7 37 70-106 54-90 (478)
66 3fp5_A Acyl-COA binding protei 24.1 1.2E+02 0.0041 18.6 4.1 50 60-111 50-104 (106)
67 1wnd_A Putative betaine aldehy 24.0 1.2E+02 0.0041 23.4 4.9 36 71-106 70-105 (495)
68 3v4c_A Aldehyde dehydrogenase 23.9 1.2E+02 0.0041 23.5 5.0 37 70-106 72-108 (528)
69 1x2l_A CUT-like 2, homeobox pr 23.8 84 0.0029 19.3 3.3 30 65-94 48-79 (101)
70 1st7_A ACBP, acyl-COA-binding 23.7 1.1E+02 0.0037 17.9 3.7 59 39-99 17-84 (86)
71 3i44_A Aldehyde dehydrogenase; 23.7 1.2E+02 0.0042 23.4 4.9 36 71-106 73-108 (497)
72 3fx7_A Putative uncharacterize 23.6 1.3E+02 0.0044 18.2 5.0 42 66-107 25-72 (94)
73 4e4g_A Methylmalonate-semialde 23.5 1.4E+02 0.0048 23.2 5.3 37 70-106 73-109 (521)
74 3sza_A Aldehyde dehydrogenase, 23.4 1.2E+02 0.0042 23.1 4.9 36 71-106 28-63 (469)
75 1a4s_A ALDH, betaine aldehyde 23.4 1.2E+02 0.0042 23.4 4.9 35 72-106 69-103 (503)
76 1t90_A MMSDH, probable methylm 23.4 1E+02 0.0035 23.7 4.4 36 71-106 53-88 (486)
77 3ros_A NAD-dependent aldehyde 23.4 1.3E+02 0.0044 23.2 5.0 37 70-106 35-71 (484)
78 2pfy_A Putative exported prote 23.2 99 0.0034 21.7 4.1 22 74-95 215-236 (301)
79 4h7n_A Aldehyde dehydrogenase; 23.0 57 0.002 25.0 2.9 36 70-105 37-72 (474)
80 3b4w_A Aldehyde dehydrogenase; 23.0 1.2E+02 0.0041 23.4 4.8 31 76-106 63-93 (495)
81 3etf_A Putative succinate-semi 22.9 1.3E+02 0.0045 22.8 4.9 37 70-106 38-74 (462)
82 2j6l_A Aldehyde dehydrogenase 22.7 1.3E+02 0.0045 23.2 4.9 36 71-106 69-104 (500)
83 1uzb_A 1-pyrroline-5-carboxyla 22.7 1.3E+02 0.0044 23.3 4.9 35 72-106 85-119 (516)
84 1wh6_A CUT-like 2, homeobox pr 22.5 50 0.0017 20.3 2.0 29 65-93 48-78 (101)
85 3lns_A Benzaldehyde dehydrogen 22.3 1.1E+02 0.0037 23.3 4.4 48 58-106 20-73 (457)
86 3k9d_A LMO1179 protein, aldehy 22.0 1.4E+02 0.0048 22.7 4.9 37 69-105 20-56 (464)
87 2imp_A Lactaldehyde dehydrogen 21.4 1.1E+02 0.0036 23.5 4.2 36 71-106 54-89 (479)
88 3lay_A Zinc resistance-associa 21.4 1.5E+02 0.0053 19.8 4.5 26 74-99 62-87 (175)
89 3prl_A NADP-dependent glyceral 21.3 1.5E+02 0.005 23.0 4.9 36 71-106 59-94 (505)
90 3ek1_A Aldehyde dehydrogenase; 21.1 1.1E+02 0.0037 23.8 4.2 37 70-106 79-115 (504)
91 1euh_A NADP dependent non phos 21.1 1.1E+02 0.0037 23.4 4.2 36 71-106 50-85 (475)
92 3qan_A 1-pyrroline-5-carboxyla 21.0 1.5E+02 0.005 23.2 4.9 36 71-106 84-119 (538)
93 2ctw_A DNAJ homolog subfamily 20.7 1.1E+02 0.0039 18.3 3.5 41 50-90 36-80 (109)
94 2hpg_A ABC transporter, peripl 20.6 94 0.0032 22.4 3.6 22 74-95 235-256 (327)
95 1ez0_A ALDH, aldehyde dehydrog 20.6 1.1E+02 0.0038 23.6 4.2 36 71-106 40-75 (510)
No 1
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.96 E-value=4e-28 Score=156.39 Aligned_cols=86 Identities=30% Similarity=0.535 Sum_probs=80.6
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHH
Q 033714 25 GRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMK 104 (113)
Q Consensus 25 ~k~~~k~~~d~~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~ 104 (113)
..+++++.+||++|+||+||||||++++|..|+.+||+ +++.+|+++||++|++|++++|++|+++|++++++|..+|+
T Consensus 5 ~~~~kk~~kdp~~pKrP~say~lF~~~~r~~i~~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~ 83 (102)
T 2co9_A 5 SSGKKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPN-ATFGEVSKIVASMWDGLGEEQKQVYKKKTEAAKKEYLKQLA 83 (102)
T ss_dssp CCCSCSSCCCCCSCCCCCCHHHHTHHHHHHHHHHHCTT-SCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456777899999999999999999999999999999 59999999999999999999999999999999999999999
Q ss_pred HHHHhhh
Q 033714 105 NYNRRQV 111 (113)
Q Consensus 105 ~y~~~~~ 111 (113)
+|+..+.
T Consensus 84 ~Y~~~~~ 90 (102)
T 2co9_A 84 AYRASLV 90 (102)
T ss_dssp HHHHHHT
T ss_pred HHHhhcc
Confidence 9998764
No 2
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.94 E-value=8.5e-27 Score=145.82 Aligned_cols=80 Identities=39% Similarity=0.660 Sum_probs=74.4
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 033714 28 SGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106 (113)
Q Consensus 28 ~~k~~~d~~~PKrP~say~lF~~~~r~~~~~~~p~~~-~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y 106 (113)
+++..+||++|+||+|||+||++++|..|+.+||+.. ++.||+++||++|++||+++|++|+++|++++++|..+|.+|
T Consensus 6 ~~~~~kdp~~PKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~Y 85 (86)
T 2eqz_A 6 SGMAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDREMKDY 85 (86)
T ss_dssp SSCSSCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4456789999999999999999999999999999942 379999999999999999999999999999999999999999
Q ss_pred H
Q 033714 107 N 107 (113)
Q Consensus 107 ~ 107 (113)
+
T Consensus 86 ~ 86 (86)
T 2eqz_A 86 G 86 (86)
T ss_dssp C
T ss_pred C
Confidence 4
No 3
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=99.94 E-value=3.2e-27 Score=151.49 Aligned_cols=81 Identities=30% Similarity=0.559 Sum_probs=77.1
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 033714 29 GKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 108 (113)
Q Consensus 29 ~k~~~d~~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y~~ 108 (113)
+++.+||+.|+||+||||||+++.|..|+.++|+ +++.+|+++||++|++||+++|++|+++|++++++|..+|.+|..
T Consensus 2 kkk~kdp~~PKRP~saf~lF~~~~r~~ik~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~Y~~e~~~y~~ 80 (99)
T 1k99_A 2 KKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPE-MSNLDLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFRE 80 (99)
T ss_dssp CCCCSSSSSCCCSCCHHHHHHHHHHHHHHTTCTT-SCSHHHHHHHHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHGGGGG
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677899999999999999999999999999999 599999999999999999999999999999999999999999987
Q ss_pred hh
Q 033714 109 RQ 110 (113)
Q Consensus 109 ~~ 110 (113)
..
T Consensus 81 ~~ 82 (99)
T 1k99_A 81 DH 82 (99)
T ss_dssp CC
T ss_pred HC
Confidence 53
No 4
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=99.94 E-value=2.4e-26 Score=145.49 Aligned_cols=79 Identities=29% Similarity=0.584 Sum_probs=75.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 033714 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQV 111 (113)
Q Consensus 32 ~~d~~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y~~~~~ 111 (113)
.+||++|+||+||||||++++|..|+.+||+ +++.+|+++||++|++||+++|++|+++|++++++|..+|++|+...+
T Consensus 2 ~kdp~~pKrP~~af~lF~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Y~~~~~ 80 (92)
T 2crj_A 2 SSGSSGPKAPVTGYVRFLNERREQIRTRHPD-LPFPEITKMLGAEWSKLQPAEKQRYLDEAEKEKQQYLKELWAYQQSEA 80 (92)
T ss_dssp CCCCSSSCCCCCHHHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHSSHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHccHH
Confidence 4799999999999999999999999999999 599999999999999999999999999999999999999999987653
No 5
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=99.94 E-value=4.5e-27 Score=144.03 Aligned_cols=76 Identities=49% Similarity=0.819 Sum_probs=73.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 033714 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 108 (113)
Q Consensus 32 ~~d~~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y~~ 108 (113)
++||+.|+||+|||+||++++|..++.+||+ +++.+|+++||++|++||+++|++|.++|++++++|..+|++|+.
T Consensus 1 kkdp~~pKrP~saf~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~ 76 (77)
T 1hme_A 1 FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPG-LSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 76 (77)
T ss_dssp CCCSSCCCCCCCTTHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHSCGGGSHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4799999999999999999999999999999 599999999999999999999999999999999999999999964
No 6
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=99.94 E-value=2.5e-27 Score=151.28 Aligned_cols=83 Identities=36% Similarity=0.711 Sum_probs=78.2
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCC--HHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHH
Q 033714 27 KSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKS--VAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMK 104 (113)
Q Consensus 27 ~~~k~~~d~~~PKrP~say~lF~~~~r~~~~~~~p~~~~--~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~ 104 (113)
+++++.+||+.|+||+||||||++++|..|+.+||+ ++ +.+|+++||++|++||+++|++|+++|++++++|..+|.
T Consensus 12 ~~~k~~kdp~~pKrP~say~lF~~~~r~~~k~~~p~-~~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~ 90 (97)
T 2lhj_A 12 RPRKAKKDPNAPKRALSSYMFFAKEKRVEIIAENPE-IAKDVAAIGKMIGAAWNALSDEEKKPYERMSDEDRVRYEREKA 90 (97)
T ss_dssp CTTCTTSCCCCCCCCCCSSTHHHHGGGGGHHHHCTT-STTCSSHHHHHHHHTSSSSCSTTTSSSSHHHHHHHHHHHHHHH
T ss_pred ccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677899999999999999999999999999999 48 999999999999999999999999999999999999999
Q ss_pred HHHHhh
Q 033714 105 NYNRRQ 110 (113)
Q Consensus 105 ~y~~~~ 110 (113)
+|+.+.
T Consensus 91 ~y~~~~ 96 (97)
T 2lhj_A 91 EYAQRK 96 (97)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 999864
No 7
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A
Probab=99.94 E-value=1.8e-27 Score=150.93 Aligned_cols=83 Identities=39% Similarity=0.687 Sum_probs=78.6
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 033714 27 KSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106 (113)
Q Consensus 27 ~~~k~~~d~~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y 106 (113)
++++..+||+.|+||+|||+||++++|..|..+||+ +++.+|+++||++|++||+++|++|+++|++++++|..+|++|
T Consensus 10 ~~~k~~kdp~~pKrP~saf~lF~~~~r~~~~~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~~~Y 88 (93)
T 1cg7_A 10 RTTRKKKDPNAPKRALSAYMFFANENRDIVRSENPD-ITFGQVGKKLGEKWKALTPEEKQPYEAKAQADKKRYESEKELY 88 (93)
T ss_dssp CCCCCCCCSSCCCSCCCHHHHHHHHHTSTTTTTCTT-SCHHHHTTTHHHHHHTTHHHHHHHHHHHHTTHHHHTTHHHHHH
T ss_pred ccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677899999999999999999999999999999 5999999999999999999999999999999999999999999
Q ss_pred HHhh
Q 033714 107 NRRQ 110 (113)
Q Consensus 107 ~~~~ 110 (113)
+.+.
T Consensus 89 ~~~~ 92 (93)
T 1cg7_A 89 NATL 92 (93)
T ss_dssp HHHT
T ss_pred HHcc
Confidence 9864
No 8
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=99.93 E-value=9.9e-27 Score=145.87 Aligned_cols=77 Identities=29% Similarity=0.486 Sum_probs=73.5
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHH
Q 033714 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 107 (113)
Q Consensus 30 k~~~d~~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y~ 107 (113)
+..+||+.|+||+||||||++++|..|+.+||+ +++.+|+++||++|++|++++|++|+++|++++++|..++++|+
T Consensus 10 ~~~kdp~~pKrP~~af~lf~~~~r~~~~~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~P~Yk 86 (87)
T 2e6o_A 10 VSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPG-KDNRAISVILGDRWKKMKNEERRMYTLEAKALAEEQKRLNPDCW 86 (87)
T ss_dssp CCCCCCSSCCCCCCHHHHHHHHTHHHHHHHCTT-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHCcCCC
Confidence 567899999999999999999999999999999 59999999999999999999999999999999999999998874
No 9
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.93 E-value=3.9e-26 Score=144.46 Aligned_cols=78 Identities=29% Similarity=0.443 Sum_probs=74.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 033714 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 110 (113)
Q Consensus 32 ~~d~~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y~~~~ 110 (113)
..+|++|+||+||||||++++|..|+.+||+ +++.+|+++||++|++|++++|++|+++|++++++|..+|.+|+..+
T Consensus 2 ~~~p~~pKrP~say~lF~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~~~y~~~~ 79 (92)
T 2cs1_A 2 SSGSSGIKKPMSASALFVQDHRPQFLIENPK-TSLEDATLQIEELWKTLSEEEKLKYEEKATKDLERYNSQMKRAIEQE 79 (92)
T ss_dssp CCCCSSSCCCCCHHHHHHHHHHHHHHHHCCS-SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHTTTHHHHHHHHHHTSTT
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3578999999999999999999999999999 59999999999999999999999999999999999999999998764
No 10
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.93 E-value=9.3e-27 Score=146.87 Aligned_cols=79 Identities=30% Similarity=0.479 Sum_probs=73.4
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHH
Q 033714 25 GRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMK 104 (113)
Q Consensus 25 ~k~~~k~~~d~~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~ 104 (113)
+++++++.+||++|+||+||||||++++|..|+.+||+ +++.+|+++||++|++|++++|++|+++|++++++|..+|.
T Consensus 8 k~k~~k~~kdp~~pKrP~say~lF~~~~r~~~k~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~ 86 (90)
T 1wgf_A 8 KPSQEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPE-LSESELTRLLARMWNDLSEKKKAKYKAREAALKAQSERKSG 86 (90)
T ss_dssp SSCSCCCSSCCCCCCCCCCHHHHHHHHTHHHHHHHCTT-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTCCCCS
T ss_pred CCCcCcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556777899999999999999999999999999999 59999999999999999999999999999999999987764
No 11
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=99.93 E-value=2.3e-25 Score=135.36 Aligned_cols=72 Identities=38% Similarity=0.733 Sum_probs=69.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 033714 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 109 (113)
Q Consensus 35 ~~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y~~~ 109 (113)
.++||||+|||+|||+++|..|+.+||+ +++.+|+++||++|++|++ |++|+++|++++++|..+|++|+++
T Consensus 1 s~~PKrP~say~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~--K~~y~~~A~~~k~~y~~~~~~Y~~k 72 (73)
T 3nm9_A 1 SDKPKRPLSAYALWLNSARESIKRENPG-IKVTEVAKRGGELWRAMKD--KSEWEAKAAKAKDDYDRAVKEFEAN 72 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSSS-CCHHHHHHHHHHHHHHCSC--CHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHcCCc--hHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3689999999999999999999999999 5999999999999999998 9999999999999999999999875
No 12
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=99.92 E-value=7.7e-26 Score=138.19 Aligned_cols=73 Identities=27% Similarity=0.520 Sum_probs=69.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHH
Q 033714 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 107 (113)
Q Consensus 34 d~~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y~ 107 (113)
||+.|+||+||||||++++|..|+.+||+ +++.+|+++||++|++||+++|++|.++|++++++|..+|++|+
T Consensus 1 dp~~pkrP~~af~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~Yk 73 (76)
T 1hry_A 1 VQDRVKRPMNAFIVWSRDQRRKMALENPR-MRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYK 73 (76)
T ss_dssp --CCCCCCCCHHHHHHHHHHHHHHHHCSC-CSSSHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHSSSCC
T ss_pred CcCCCCCCCCHHHHHHHHHHHHHHHHCcC-CCHHHHHHHHHhHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 68999999999999999999999999999 59999999999999999999999999999999999999998875
No 13
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=99.92 E-value=4.4e-26 Score=141.58 Aligned_cols=78 Identities=33% Similarity=0.607 Sum_probs=72.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 033714 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 109 (113)
Q Consensus 32 ~~d~~~PKrP~say~lF~~~~r~~~~~~~p~~~-~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y~~~ 109 (113)
++||++|+||+|||+||++++|..|+.+||+.. ++.+|+++||++|++||+++|.+|+++|.+++++|..+|.+|...
T Consensus 2 kkdp~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~ 80 (83)
T 1aab_A 2 KGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPP 80 (83)
T ss_dssp CCCTTCCCCCCCHHHHHHHHHHHHHTTSCTTTCCCSSSSHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 479999999999999999999999999999942 259999999999999999999999999999999999999999753
No 14
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=99.92 E-value=3e-25 Score=134.80 Aligned_cols=72 Identities=35% Similarity=0.714 Sum_probs=69.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 033714 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 109 (113)
Q Consensus 35 ~~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y~~~ 109 (113)
|++|+||+|||+||++++|..|+.+||+ +++.||+++||++|++| ++|.+|+++|++++++|..+|.+|+.+
T Consensus 1 P~~pKrP~say~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~l--~eK~~y~~~A~~~k~~y~~e~~~Y~~~ 72 (73)
T 1wxl_A 1 SHMPKRATTAFMLWLNDTRESIKRENPG-IKVTEIAKKGGEMWKEL--KDKSKWEDAAAKDKQRYHDEMRNYKPE 72 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSTT-CCHHHHHHHHHHHHHTC--TTHHHHHHHHHHHHHHHHTTTGGGTTC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhh--HhhHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 6899999999999999999999999999 59999999999999999 889999999999999999999999764
No 15
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=99.92 E-value=7e-25 Score=136.79 Aligned_cols=74 Identities=27% Similarity=0.504 Sum_probs=70.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 033714 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 108 (113)
Q Consensus 34 d~~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y~~ 108 (113)
.|+.|+||+||||||++++|..|..+||+ +++.+|+++||++|++||+++|++|.++|++++++|..+|++|.-
T Consensus 1 ~p~~pKRP~~af~lf~~~~r~~~~~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~ 74 (85)
T 1j46_A 1 MQDRVKRPMNAFIVWSRDQRRKMALENPR-MRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKY 74 (85)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHHHSTT-SCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCC
T ss_pred CcCcCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCccccc
Confidence 47899999999999999999999999999 599999999999999999999999999999999999999999863
No 16
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.92 E-value=1.4e-24 Score=149.04 Aligned_cols=80 Identities=48% Similarity=0.791 Sum_probs=76.2
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHH
Q 033714 28 SGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 107 (113)
Q Consensus 28 ~~k~~~d~~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y~ 107 (113)
++++.+||+.|+||+|||+|||+++|..|+.+||+ +++.+|+++||++|++||+++|++|+++|++++++|..+|++|+
T Consensus 79 ~kk~~kdp~~pKrp~say~lf~~~~r~~~~~~~p~-~~~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~ 157 (159)
T 2gzk_A 79 TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPG-LSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYR 157 (159)
T ss_dssp CGGGSCCTTCCCCCCCHHHHHHHHHHHHHHHHCSC-CCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHhhHHHHHHhCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567899999999999999999999999999999 59999999999999999999999999999999999999999998
Q ss_pred H
Q 033714 108 R 108 (113)
Q Consensus 108 ~ 108 (113)
+
T Consensus 158 ~ 158 (159)
T 2gzk_A 158 A 158 (159)
T ss_dssp C
T ss_pred c
Confidence 5
No 17
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=99.91 E-value=5.9e-25 Score=132.55 Aligned_cols=70 Identities=34% Similarity=0.653 Sum_probs=65.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 033714 37 KPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106 (113)
Q Consensus 37 ~PKrP~say~lF~~~~r~~~~~~~p~~~-~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y 106 (113)
+|+||+|||+||++++|..++.+||+.. ++.+|+++||++|++||+++|.+|.++|++++++|..+|.+|
T Consensus 1 kPKrP~say~~F~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~Y 71 (71)
T 1ckt_A 1 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY 71 (71)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTCCTTTSHHHHHHHHHHHHHHHHHHTTC
T ss_pred CcCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5999999999999999999999999942 359999999999999999999999999999999999999876
No 18
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=99.91 E-value=3.7e-25 Score=133.27 Aligned_cols=71 Identities=31% Similarity=0.597 Sum_probs=63.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHH
Q 033714 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 107 (113)
Q Consensus 36 ~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y~ 107 (113)
+.|+||+||||||++++|..++.+||+ +++.+|+++||++|++||+++|++|.++|+.++++|..++++|+
T Consensus 1 gk~krP~~af~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~YK 71 (71)
T 4a3n_A 1 GSIRRPMNAFMVWAKDERKRLAQQNPD-LHNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYK 71 (71)
T ss_dssp ----CCCCHHHHHHHHHHHHHHTTCTT-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTTCC---
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHCcCcC
Confidence 579999999999999999999999999 59999999999999999999999999999999999999999985
No 19
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.91 E-value=3.1e-24 Score=139.57 Aligned_cols=79 Identities=19% Similarity=0.370 Sum_probs=73.4
Q ss_pred CCCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHH
Q 033714 27 KSGKAAKDPNKP-KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKN 105 (113)
Q Consensus 27 ~~~k~~~d~~~P-KrP~say~lF~~~~r~~~~~~~p~~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~ 105 (113)
.+.++.+|++.| +||+|||+|||+++|..|+ + +++.||+++||++|++|++++|++|+++|+.++++|..+|.+
T Consensus 6 ~~~kk~kd~~~P~KrP~say~lF~~e~r~~~k----~-~~~~eisk~lg~~Wk~Ls~~eK~~Y~~~A~~~k~~Y~~e~~~ 80 (108)
T 1v64_A 6 SGQLKDKFDGRPTKPPPNSYSLYCAELMANMK----D-VPSTERMVLCSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLR 80 (108)
T ss_dssp SCCSSCCTTTSCCCCCSSHHHHHHHHHHHHCT----T-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCCCCCCCCCCCHHHHHHHHHHHHHh----C-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677899999 9999999999999999886 5 589999999999999999999999999999999999999999
Q ss_pred HHHhh
Q 033714 106 YNRRQ 110 (113)
Q Consensus 106 y~~~~ 110 (113)
|...+
T Consensus 81 Y~~~~ 85 (108)
T 1v64_A 81 FLESL 85 (108)
T ss_dssp HHHHS
T ss_pred HHhhC
Confidence 99865
No 20
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=99.91 E-value=3.3e-25 Score=137.33 Aligned_cols=75 Identities=21% Similarity=0.428 Sum_probs=71.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 033714 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 108 (113)
Q Consensus 33 ~d~~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y~~ 108 (113)
.|++.|+||+||||||++++|..|+.+||+ +++.+|+++||++|++||+++|++|+++|++++++|..+|++|+.
T Consensus 3 ~~~~~pkrP~~af~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~yk~ 77 (82)
T 1wz6_A 3 SGSSGARRPMNAFLLFCKRHRSLVRQEHPR-LDNRGATKILADWWAVLDPKEKQKYTDMAKEYKDAFMKANPGYRS 77 (82)
T ss_dssp SSCCCSCCCCCHHHHHHHHHHHHHHHHCSS-SCTTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHCCSCSSCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHhHHhhc
Confidence 578999999999999999999999999999 599999999999999999999999999999999999999988864
No 21
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=99.91 E-value=1.3e-24 Score=140.87 Aligned_cols=76 Identities=30% Similarity=0.579 Sum_probs=69.3
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHH
Q 033714 31 AAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 107 (113)
Q Consensus 31 ~~~d~~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y~ 107 (113)
..++++.|+||+||||||++++|..|+.++|+ +++.+|+++||++|+.|++++|++|+++|++++++|..+|++|+
T Consensus 23 ~~k~~~~pKRP~naf~lF~~~~r~~~k~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Yk 98 (106)
T 4euw_A 23 SSKNKPHVKRPMNAFMVWAQAARRKLADQYPH-LHNAELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDHPDYK 98 (106)
T ss_dssp -----CCCCCCCCHHHHHHHHHHHHHHHHCTT-SCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHCTTCC
T ss_pred ccCCCCcCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 35678999999999999999999999999999 59999999999999999999999999999999999999999985
No 22
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=99.91 E-value=1.4e-24 Score=134.58 Aligned_cols=73 Identities=30% Similarity=0.575 Sum_probs=67.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHH
Q 033714 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 107 (113)
Q Consensus 34 d~~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y~ 107 (113)
.++.|+||+||||||++++|..|..+||+ +++.+|+++||++|++|++++|++|.++|++++++|..+|++|+
T Consensus 3 ~~~~pKrP~~af~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~Yk 75 (83)
T 3f27_D 3 FTSRIRRPMNAFMVWAKDERKRLAQQNPD-LHNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYK 75 (83)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHHHHCSS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHCCCCe
Confidence 46789999999999999999999999999 59999999999999999999999999999999999999999885
No 23
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=99.91 E-value=2e-24 Score=133.08 Aligned_cols=72 Identities=28% Similarity=0.560 Sum_probs=69.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 033714 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 108 (113)
Q Consensus 36 ~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y~~ 108 (113)
+.|+||+||||||++++|..|..+||+ +++.+|+++||++|++||+++|++|.++|++++++|..+|++|+-
T Consensus 1 ~~pkrP~~af~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~ 72 (80)
T 1gt0_D 1 DRVKRPMNAFMVWSRGQRRKMAQENPK-MHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKY 72 (80)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTT-SCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCC
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCccccc
Confidence 479999999999999999999999999 599999999999999999999999999999999999999999863
No 24
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.91 E-value=3.2e-24 Score=134.00 Aligned_cols=71 Identities=24% Similarity=0.431 Sum_probs=68.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHH
Q 033714 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 107 (113)
Q Consensus 36 ~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y~ 107 (113)
+.|+||+||||||++++|..|..+||+ +++.+|+++||++|++||+++|++|+++|+.++++|..+|++|.
T Consensus 1 ~~pKRP~naf~lf~~~~r~~~~~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk 71 (86)
T 2lef_A 1 MHIKKPLNAFMLYMKEMRANVVAESTL-KESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWS 71 (86)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHSSC-CCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHSTTCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHccccc
Confidence 469999999999999999999999999 59999999999999999999999999999999999999999986
No 25
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.90 E-value=8.2e-24 Score=147.07 Aligned_cols=80 Identities=48% Similarity=0.796 Sum_probs=76.2
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 033714 29 GKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 108 (113)
Q Consensus 29 ~k~~~d~~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y~~ 108 (113)
+++.+||+.|+||+|||+||++++|..|..+||+ +++.+|+++||++|++||+++|++|+++|++++++|..+|++|+.
T Consensus 93 kk~~kdp~~pKrP~saf~lf~~~~r~~~~~~~p~-~~~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~ 171 (173)
T 2yrq_A 93 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPG-LSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 171 (173)
T ss_dssp SCSCCCSSSCCCCCCHHHHHHHHHHHHHHHHCSS-SCHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccccCCccccCcccHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556799999999999999999999999999999 599999999999999999999999999999999999999999986
Q ss_pred h
Q 033714 109 R 109 (113)
Q Consensus 109 ~ 109 (113)
+
T Consensus 172 k 172 (173)
T 2yrq_A 172 K 172 (173)
T ss_dssp C
T ss_pred c
Confidence 4
No 26
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.90 E-value=2.4e-24 Score=133.13 Aligned_cols=73 Identities=23% Similarity=0.467 Sum_probs=68.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 033714 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 108 (113)
Q Consensus 35 ~~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y~~ 108 (113)
++.|+||+||||||++++|..|..+||+ +++.+|+++||++|++||+++|++|.++|++++++|..++++|+-
T Consensus 2 ~~~pkRP~naf~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~p~Yky 74 (81)
T 1i11_A 2 SPHIKRPMNAFMVWAKDERRKILQAFPD-MHNSNISKILGSRWKAMTNLEKQPYYEEQARLSKQHLEKYPDYKY 74 (81)
T ss_dssp -CCSCCSCCHHHHHHHHHHHHHHTTCSS-CCHHHHHHHHHHHHTTSCSGGGHHHHHHHHHHHHHHHTTCSCC--
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHHHHHHHHCCCCee
Confidence 4689999999999999999999999999 599999999999999999999999999999999999999998863
No 27
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=99.90 E-value=2.9e-24 Score=131.92 Aligned_cols=71 Identities=28% Similarity=0.561 Sum_probs=68.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHH
Q 033714 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 107 (113)
Q Consensus 36 ~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y~ 107 (113)
|.|+||+||||||++++|..|..++|+ +++.+|+++||++|++||+++|++|.++|++++++|..++++|+
T Consensus 1 G~iKRP~naf~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~p~Yk 71 (79)
T 3u2b_C 1 GHIKRPMNAFMVWSQIERRKIMEQSPD-MHNAEISKRLGKRWKLLKDSDKIPFIQEAERLRLKHMADYPDYK 71 (79)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTT-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHSSSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCcC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCCe
Confidence 579999999999999999999999999 59999999999999999999999999999999999999999885
No 28
>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A
Probab=99.90 E-value=6.6e-24 Score=133.95 Aligned_cols=74 Identities=18% Similarity=0.311 Sum_probs=71.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 033714 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQV 111 (113)
Q Consensus 36 ~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y~~~~~ 111 (113)
+.|+||+|||+||+++.|..+..++|+ ++.+|++.||++|++|++++|++|+++|+.++++|+.+|.+|+.+.+
T Consensus 3 ~kPKrP~SAy~lf~~~~r~~~k~~~p~--~~~evsK~lGe~Wk~ls~~eK~pye~kA~~dK~rYekEm~~Y~~~~~ 76 (91)
T 1l8y_A 3 KLPESPKRAEEIWQQSVIGDYLARFKN--DRVKALKAMEMTWNNMEKKEKLMWIKKAAEDQKRYERELSEMRAPPA 76 (91)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHHTTS--THHHHHHHHHHHHHTTGGGHHHHHHHHHHHHHHHHHHHHHTTSCGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 689999999999999999999999998 79999999999999999999999999999999999999999987654
No 29
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=99.89 E-value=9.9e-24 Score=126.07 Aligned_cols=66 Identities=33% Similarity=0.585 Sum_probs=62.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 033714 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106 (113)
Q Consensus 36 ~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y 106 (113)
|.|+||+|||+||++++|..++.+| +.+|+++||++|++||+++|.+|+++|.+++++|..+|.+|
T Consensus 1 g~PKrP~say~~F~~~~r~~~k~~~-----p~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y 66 (67)
T 3fgh_A 1 GKPKRPRSAYNVYVAERFQEAKGDS-----PQEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSW 66 (67)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSSS-----HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcCCCCCCHHHHHHHHHHHHHHhcC-----HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5899999999999999999997654 46999999999999999999999999999999999999988
No 30
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=8.9e-23 Score=141.85 Aligned_cols=81 Identities=35% Similarity=0.622 Sum_probs=75.7
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCC-CCHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 033714 28 SGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKN-KSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106 (113)
Q Consensus 28 ~~k~~~d~~~PKrP~say~lF~~~~r~~~~~~~p~~-~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y 106 (113)
.+...+||++|+||+|||+||++++|..|+.+||+. +++.+|+++||++|++||++||++|+++|..++++|..+|.+|
T Consensus 6 ~k~~k~dp~~PKrp~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y 85 (173)
T 2yrq_A 6 SGMGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY 85 (173)
T ss_dssp CSSSSCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHC
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 345678999999999999999999999999999994 3899999999999999999999999999999999999999999
Q ss_pred HH
Q 033714 107 NR 108 (113)
Q Consensus 107 ~~ 108 (113)
..
T Consensus 86 ~~ 87 (173)
T 2yrq_A 86 IP 87 (173)
T ss_dssp CC
T ss_pred hh
Confidence 64
No 31
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.88 E-value=1.4e-22 Score=130.28 Aligned_cols=74 Identities=16% Similarity=0.319 Sum_probs=66.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 033714 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 110 (113)
Q Consensus 34 d~~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y~~~~ 110 (113)
...+||||+|||+||+++++. ..++++ +++.||+++||++|++|+++||++|+++|++++++|..+|.+|...+
T Consensus 5 ~~~~PKrP~say~lF~~e~~~--~p~~~~-~~~~eisK~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y~~~~ 78 (101)
T 1v63_A 5 SSGPKKPPMNGYQKFSQELLS--NGELNH-LPLKERMVEIGSRWQRISQSQKEHYKKLAEEQQRQYKVHLDLWVKSL 78 (101)
T ss_dssp CCSSCCCCSSSHHHHHHHHHH--HCTTTT-SCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCHHHHHHHHHHh--CCCCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 457899999999999999964 224455 48999999999999999999999999999999999999999999875
No 32
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=1.8e-22 Score=125.11 Aligned_cols=61 Identities=25% Similarity=0.413 Sum_probs=58.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHhhhcCCChhhhhHHHHHHHHH
Q 033714 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKS-VAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95 (113)
Q Consensus 34 d~~~PKrP~say~lF~~~~r~~~~~~~p~~~~-~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~ 95 (113)
+++.|+||+||||||++++|..|+.+||+ ++ +.||+++||++|++|++++|++|+++|..+
T Consensus 2 ~~~~PKRP~say~lF~~e~R~~ik~~~P~-~~~~~eisK~lge~Wk~ls~eeK~~y~~~A~~d 63 (81)
T 2d7l_A 2 SSGSSGRPKTGFQMWLEENRSNILSDNPD-FSDEADIIKEGMIRFRVLSTEERKVWANKAKGE 63 (81)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHHHHCTT-CCSHHHHHHHHHHHHSSSCHHHHHHHHHHTTSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 68899999999999999999999999999 57 999999999999999999999999999876
No 33
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.87 E-value=2.5e-22 Score=146.12 Aligned_cols=78 Identities=15% Similarity=0.391 Sum_probs=74.2
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 033714 31 AAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 109 (113)
Q Consensus 31 ~~~d~~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y~~~ 109 (113)
...||++|++|+|||+||++++|..|+.+||+ +++.||+++||++|+.|+++||.+|+++|..++++|+.+|..|.+.
T Consensus 35 s~~~p~~PKrP~say~lF~~e~r~~~k~~~P~-~~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~~~y~~~ 112 (238)
T 3tmm_A 35 SSVLASCPKKPVSSYLRFSKEQLPIFKAQNPD-AKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQ 112 (238)
T ss_dssp CCHHHHSCCCCCCHHHHHHHHHHHHHHHHSTT-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35689999999999999999999999999999 5999999999999999999999999999999999999999999754
No 34
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.85 E-value=1.4e-21 Score=140.33 Aligned_cols=75 Identities=16% Similarity=0.404 Sum_probs=71.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 033714 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 109 (113)
Q Consensus 34 d~~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y~~~ 109 (113)
+|++|+||+|||+||++++|..|+.+||+ +++.||+++||++|+.||+++|.+|+++|..++++|..+|.+|.+.
T Consensus 6 ~p~~PKrP~say~lF~~~~r~~~k~~~P~-~~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~~~y~~~ 80 (214)
T 3tq6_A 6 LASCPKKPVSSYLRFSKEQLPIFKAQNPD-AKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQ 80 (214)
T ss_dssp HHHSCCCCCCHHHHHHHHHHHHHHHHCTT-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHccCHHhhhHHHHHHHHHHHHHHHHhhhhccc
Confidence 46799999999999999999999999999 5999999999999999999999999999999999999999999754
No 35
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=8e-22 Score=125.08 Aligned_cols=70 Identities=21% Similarity=0.339 Sum_probs=64.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH---HhhhcCCChhhhhHHHHHHHHHHHHHHHHHH
Q 033714 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAG---GEKWKSMSEADKAPYVAKAEKRKVEYEKDMK 104 (113)
Q Consensus 32 ~~d~~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~eisk~l---~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~ 104 (113)
..+++.|+||+||||||++++|..|+.+ + +++.||+++| |++|++|+++||++|+++|+++++.|..++.
T Consensus 5 ~~~~~~PKRP~sAf~lF~~e~R~~ik~e--~-~~~~eisK~l~~cGe~Wk~ls~eEK~pYe~~A~~~K~~y~kd~~ 77 (93)
T 2cto_A 5 SSGMPNRKASRNAYYFFVQEKIPELRRR--G-LPVARVADAIPYCSSDWALLREEEKEKYAEMAREWRAAQGKDPG 77 (93)
T ss_dssp CCCCCCCCSSCCHHHHHHHTTHHHHHHH--T-CCCSSHHHHTGGGHHHHHHSCHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHc--C-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcccc
Confidence 4578899999999999999999999988 5 5899999999 9999999999999999999999999998763
No 36
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.83 E-value=2.7e-22 Score=144.00 Aligned_cols=77 Identities=31% Similarity=0.497 Sum_probs=70.3
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 033714 29 GKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 108 (113)
Q Consensus 29 ~k~~~d~~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y~~ 108 (113)
++..+||+.|+||+|||+|||+++|..+..+ ++.+|+++||++|++|++++|++|+++|++++++|..+|++|++
T Consensus 106 kk~~kdp~~PKrP~say~lF~~e~r~~~k~~-----~p~ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~y~~ 180 (214)
T 3tq6_A 106 KKELTLLGKPKRPRSAYNVYVAERFQEAKGD-----SPQEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEE 180 (214)
T ss_dssp HHHHHHTTCCCCCCCHHHHHHHHHTTTSSCS-----SHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccccCcccccchhhhhHHHHHHhhccC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556799999999999999999999988654 45599999999999999999999999999999999999999998
Q ss_pred hh
Q 033714 109 RQ 110 (113)
Q Consensus 109 ~~ 110 (113)
++
T Consensus 181 ~~ 182 (214)
T 3tq6_A 181 QM 182 (214)
T ss_dssp HH
T ss_pred hC
Confidence 75
No 37
>2yuk_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=99.83 E-value=1.4e-22 Score=127.82 Aligned_cols=69 Identities=20% Similarity=0.324 Sum_probs=63.4
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCC--HHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHH
Q 033714 29 GKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKS--VAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKD 102 (113)
Q Consensus 29 ~k~~~d~~~PKrP~say~lF~~~~r~~~~~~~p~~~~--~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~ 102 (113)
.+..+||+.|+||+|||||||+++|..|+.+||+ ++ +.||+ ++|++|++++|++|+++|++++++|..+
T Consensus 14 ~k~~kDpnaPKRp~sAf~lf~~e~R~kik~enP~-~s~~~~eIs----e~Wk~ls~eeK~pY~~kA~~~K~~h~~~ 84 (90)
T 2yuk_A 14 LKWEKEEALGEMATVAPVLYTNINFPNLKEEFPD-WTTRVKQIA----KLWRKASSQERAPYVQKARDNRAALRIN 84 (90)
T ss_dssp HHHHHHHHHGGGCSSSHHHHHHHHCTTHHHHCCS-HHHHHHHHH----HHHHHSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred hhccCCCCCCCCCccHHHHHHHHhHHHHHHHCcC-ccchHHHHH----HHHHcCCHHHHHHHHHHHHHHHHHHHhh
Confidence 3555699999999999999999999999999999 58 88888 9999999999999999999999999753
No 38
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.83 E-value=4.5e-22 Score=144.79 Aligned_cols=77 Identities=31% Similarity=0.497 Sum_probs=70.3
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 033714 29 GKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 108 (113)
Q Consensus 29 ~k~~~d~~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y~~ 108 (113)
++..+||+.|+||+|||+|||+++|..++.+ +..+|+++||++|++|++++|++|+++|++++++|+.+|++|++
T Consensus 138 kk~~kdp~~PKrP~say~lF~~e~r~~~k~~-----~p~ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~y~~ 212 (238)
T 3tmm_A 138 KKELTLLGKPKRPRSAYNVYVAERFQEAKGD-----SPQEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEE 212 (238)
T ss_dssp HHHHHHTTCCCCCCCHHHHHHHHHTTTSCCS-----SHHHHHHHHHHHHHTCCTTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCCCCCCCcHHHHHHHHHHHHHhcc-----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556899999999999999999999888654 45599999999999999999999999999999999999999998
Q ss_pred hh
Q 033714 109 RQ 110 (113)
Q Consensus 109 ~~ 110 (113)
++
T Consensus 213 k~ 214 (238)
T 3tmm_A 213 QM 214 (238)
T ss_dssp HH
T ss_pred hC
Confidence 75
No 39
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.78 E-value=1.9e-19 Score=123.33 Aligned_cols=72 Identities=28% Similarity=0.541 Sum_probs=69.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHH
Q 033714 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 107 (113)
Q Consensus 35 ~~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y~ 107 (113)
++.|+||+||||||+.+.+..|..+||+ +++.||+++||++|++||+++|.+|.++|..++++|..+|.+|.
T Consensus 2 ~~~~Krp~~af~~~~~~~~~ki~~~~P~-~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~ 73 (159)
T 2gzk_A 2 QDRVKRPMNAFIVWSRDQRRKMALENPR-MRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYK 73 (159)
T ss_dssp TTCCCCCCCHHHHHHHHHHHHHHHHCSS-CCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCSSCS
T ss_pred cCCCCCCCcHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHhhHHHhccHHHHHHHHHHHHHHHhhccc
Confidence 5789999999999999999999999999 59999999999999999999999999999999999999998885
No 40
>2qgu_A Probable signal peptide protein; NESG, RSR89, Q8XV73, structural genomics, PSI-2, protein STR initiative; HET: MSE PEF; 1.50A {Ralstonia solanacearum}
Probab=80.95 E-value=1.3 Score=30.82 Aligned_cols=43 Identities=9% Similarity=0.134 Sum_probs=33.0
Q ss_pred CHHHHHHH-HHhhhcCCChhhhhHHHHHHHHH-HHHHHHHHHHHH
Q 033714 65 SVAAVGKA-GGEKWKSMSEADKAPYVAKAEKR-KVEYEKDMKNYN 107 (113)
Q Consensus 65 ~~~eisk~-l~~~Wk~ls~~eK~~y~~~a~~~-k~~y~~~~~~y~ 107 (113)
++..+++. ||..|+.+|+++++.|.+..... ...|-..+..|.
T Consensus 73 D~~~~a~~vLG~~wr~at~~Qr~~F~~~F~~~L~~tY~~~l~~y~ 117 (211)
T 2qgu_A 73 DFKRTTQIAMGRFWSQATPEQQQQIQDGFKSLLIRTYAGALANVR 117 (211)
T ss_dssp CHHHHHHHHHGGGTTTSCHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHhHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 55555554 58999999999999999888775 456777777665
No 41
>3u65_B TP33 protein; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; HET: EDO; 1.40A {Treponema pallidum subsp} PDB: 4di4_B* 4di3_D*
Probab=40.00 E-value=51 Score=23.92 Aligned_cols=24 Identities=8% Similarity=0.259 Sum_probs=19.2
Q ss_pred HhhhcCCChhhhhHHHHHHHHHHH
Q 033714 74 GEKWKSMSEADKAPYVAKAEKRKV 97 (113)
Q Consensus 74 ~~~Wk~ls~~eK~~y~~~a~~~k~ 97 (113)
...|..||+++++...+.+.+...
T Consensus 234 ~~~w~~L~~e~q~~i~~a~~e~~~ 257 (328)
T 3u65_B 234 DGSWARIPSRYHDAMLQAATRVRQ 257 (328)
T ss_dssp HHHHTTSCGGGHHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHH
Confidence 356999999999999987766543
No 42
>3o39_A Periplasmic protein related to spheroblast format; alpha-helical, structural genomics, montreal-kingston bacter structural genomics initiative; HET: MSE; 2.60A {Escherichia coli}
Probab=38.71 E-value=37 Score=21.08 Aligned_cols=27 Identities=19% Similarity=0.226 Sum_probs=21.4
Q ss_pred HHHHHHHhhhcCCChhhhhHHHHHHHH
Q 033714 68 AVGKAGGEKWKSMSEADKAPYVAKAEK 94 (113)
Q Consensus 68 eisk~l~~~Wk~ls~~eK~~y~~~a~~ 94 (113)
+..+.-..++.-|++++|+.|.+..++
T Consensus 79 ~~~r~~~qmy~lLTPEQk~q~~~~~~~ 105 (108)
T 3o39_A 79 AHMETQNKIYNILTPEQKKQFNANFEK 105 (108)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 445556789999999999999886653
No 43
>2lkw_A Membrane fusion protein P15; viral protein; NMR {Baboon orthoreovirus}
Probab=36.00 E-value=10 Score=17.21 Aligned_cols=11 Identities=36% Similarity=0.748 Sum_probs=8.3
Q ss_pred CCCCCCCCHHH
Q 033714 36 NKPKRPASAFF 46 (113)
Q Consensus 36 ~~PKrP~say~ 46 (113)
.+|-.|+|||.
T Consensus 9 qppapppnafv 19 (26)
T 2lkw_A 9 QPPAPPPNAFV 19 (26)
T ss_pred cCCCcCCCeeE
Confidence 46778899875
No 44
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.94 E-value=71 Score=18.86 Aligned_cols=39 Identities=15% Similarity=0.076 Sum_probs=26.8
Q ss_pred HHHHHHHHHhCCCCCC----HHHHHHHHHhhhcCCChhhhhHH
Q 033714 50 EEFREQYKKDHPKNKS----VAAVGKAGGEKWKSMSEADKAPY 88 (113)
Q Consensus 50 ~~~r~~~~~~~p~~~~----~~eisk~l~~~Wk~ls~~eK~~y 88 (113)
+..|..++.-||+... ..+....|.+.|..|++..+..-
T Consensus 36 ~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~ 78 (99)
T 2yua_A 36 AAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRK 78 (99)
T ss_dssp HHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHH
Confidence 4445556677888421 36788899999999987765433
No 45
>3fxb_A Trap dicarboxylate transporter, DCTP subunit; periplasmic substrate binding protein, selectivity helix, TR membrane; HET: 4CS; 2.90A {Silicibacter pomeroyi dss-3}
Probab=31.80 E-value=48 Score=23.94 Aligned_cols=24 Identities=13% Similarity=0.034 Sum_probs=18.9
Q ss_pred HhhhcCCChhhhhHHHHHHHHHHH
Q 033714 74 GEKWKSMSEADKAPYVAKAEKRKV 97 (113)
Q Consensus 74 ~~~Wk~ls~~eK~~y~~~a~~~k~ 97 (113)
...|..||+++|+...+.+.+...
T Consensus 231 ~~~w~~L~~e~q~~i~~aa~~~~~ 254 (326)
T 3fxb_A 231 KDFYDGLSAEDQQLVQNAALAAYD 254 (326)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHH
Confidence 367999999999999887766533
No 46
>2xwv_A Sialic acid-binding periplasmic protein SIAP; transport protein, trap, sugar transport; HET: SLB; 1.05A {Haemophilus influenzae} PDB: 2xxk_A* 2xa5_A* 2wyp_A* 2wx9_A* 2xwo_A* 2xwk_A* 2v4c_A* 2wyk_A* 2xwi_A* 3b50_A* 2cey_A 2cex_A
Probab=31.46 E-value=78 Score=22.60 Aligned_cols=22 Identities=23% Similarity=0.246 Sum_probs=17.8
Q ss_pred HhhhcCCChhhhhHHHHHHHHH
Q 033714 74 GEKWKSMSEADKAPYVAKAEKR 95 (113)
Q Consensus 74 ~~~Wk~ls~~eK~~y~~~a~~~ 95 (113)
...|..||++.++...+.+.+.
T Consensus 220 ~~~~~~L~~~~q~~i~~a~~~a 241 (312)
T 2xwv_A 220 NETYKELPEDLQKVVKDAAENA 241 (312)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHhhCCHHHHHHHHHHHHHH
Confidence 4679999999999988866554
No 47
>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway, envelope stress, transduction; HET: MSE; 1.45A {Escherichia coli str} PDB: 3qzc_A
Probab=30.70 E-value=65 Score=21.00 Aligned_cols=31 Identities=13% Similarity=0.250 Sum_probs=22.7
Q ss_pred HHHHHHHhhhcCCChhhhhHHHHHHHHHHHH
Q 033714 68 AVGKAGGEKWKSMSEADKAPYVAKAEKRKVE 98 (113)
Q Consensus 68 eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~ 98 (113)
+..+.-.+++.-|++++|..|.+..++-..+
T Consensus 107 ~r~k~~~qiy~vLTPEQk~ql~e~~~~r~~~ 137 (145)
T 3itf_A 107 EMAKVRNQMYRLLTPEQQAVLNEKHQQRMEQ 137 (145)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHH
Confidence 3445556889999999999998876654433
No 48
>3epy_A Acyl-COA-binding domain-containing protein 7; acyl-COA binding protein, fatty acid, lipid metabolism, structural genomics; HET: COA PLM; 2.00A {Homo sapiens} SCOP: a.11.1.1
Probab=29.42 E-value=61 Score=19.27 Aligned_cols=59 Identities=20% Similarity=0.354 Sum_probs=30.3
Q ss_pred CCCCCH-----HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCC----hhhhhHHHHHHHHHHHHH
Q 033714 39 KRPASA-----FFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS----EADKAPYVAKAEKRKVEY 99 (113)
Q Consensus 39 KrP~sa-----y~lF~~~~r~~~~~~~p~~~~~~eisk~l~~~Wk~ls----~~eK~~y~~~a~~~k~~y 99 (113)
.+|.+. |-||-+.....+-...|+.+++.. +.=-+.|+.|. ++-++.|++...+....|
T Consensus 20 ~~p~~~~~L~lYalyKQAt~Gd~~~~~Pg~~d~~~--~aKw~AW~~l~g~s~eeA~~~Yi~~v~~l~~ky 87 (89)
T 3epy_A 20 ARPDDGELKELYGLYKQAIVGDINIACPGMLDLKG--KAKWEAWNLKKGLSTEDATSAYISKAKELIEKY 87 (89)
T ss_dssp SCCCHHHHHHHHHHHHHHHTCSCCSCCTTTTCHHH--HHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHhhCCCCCCCCcccchHH--HHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhhh
Confidence 456654 333433332222233455434433 33346686554 445677888777766555
No 49
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=28.47 E-value=74 Score=18.51 Aligned_cols=38 Identities=18% Similarity=0.246 Sum_probs=26.1
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHhhhcCCChhhhhH
Q 033714 50 EEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKAP 87 (113)
Q Consensus 50 ~~~r~~~~~~~p~~~-~~~eisk~l~~~Wk~ls~~eK~~ 87 (113)
+..+..++.-||+.. ...+....|.+.|..|++.++..
T Consensus 27 ~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~ 65 (92)
T 2o37_A 27 KGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKRE 65 (92)
T ss_dssp HHHHHHHHHHCTTSTTCCHHHHHHHHHHHHHHTSHHHHH
T ss_pred HHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHCCHHHHH
Confidence 344555667788842 34578888999999888765543
No 50
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=28.38 E-value=40 Score=26.63 Aligned_cols=22 Identities=23% Similarity=0.475 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhcC
Q 033714 92 AEKRKVEYEKDMKNYNRRQVIY 113 (113)
Q Consensus 92 a~~~k~~y~~~~~~y~~~~~~~ 113 (113)
+.++.+.|..++++|..+++.|
T Consensus 71 Y~~dlakY~~~~AeY~~kl~aY 92 (497)
T 3iox_A 71 YQADLAKYQKDLADYPVKLKAY 92 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666666666555543
No 51
>2wme_A BADH, betaine aldehyde dehydrogenase; aldehyde oxidation, NAD, NADP complex, oxidoreductase; HET: NAP CSO; 2.10A {Pseudomonas aeruginosa} PDB: 2wox_A* 3zqa_A* 2xdr_A*
Probab=28.00 E-value=66 Score=24.90 Aligned_cols=36 Identities=14% Similarity=0.306 Sum_probs=29.3
Q ss_pred HHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 033714 71 KAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106 (113)
Q Consensus 71 k~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y 106 (113)
+.....|..++.++|..+.....+..+++.+++.+.
T Consensus 54 ~~A~~~W~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 89 (490)
T 2wme_A 54 VEGQKVWAAMTAMQRSRILRRAVDILRERNDELAAL 89 (490)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHhhCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 344578999999999999988888888888777654
No 52
>1o20_A Gamma-glutamyl phosphate reductase; TM0293, structural genom JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: c.82.1.1
Probab=27.64 E-value=98 Score=23.33 Aligned_cols=37 Identities=11% Similarity=0.127 Sum_probs=29.2
Q ss_pred HHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 033714 70 GKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106 (113)
Q Consensus 70 sk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y 106 (113)
++.....|..++.++|..+.....+..+++..++.+-
T Consensus 23 A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~ 59 (427)
T 1o20_A 23 VREAWDVLRNATTREKNKAIKKIAEKLDERRKEILEA 59 (427)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4444567999999999999988888878887776654
No 53
>2wh5_A Acyl-COA-binding domain-containing protein 4; alternative splicing, fatty acid metabolism, lipid transport, lipid binding protein; HET: STE ST9 COA; 2.60A {Homo sapiens}
Probab=27.31 E-value=57 Score=20.14 Aligned_cols=62 Identities=13% Similarity=0.201 Sum_probs=33.2
Q ss_pred CCCCH-----HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCC---C-hhhhhHHHHHHHHHHHHHHHHH
Q 033714 40 RPASA-----FFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM---S-EADKAPYVAKAEKRKVEYEKDM 103 (113)
Q Consensus 40 rP~sa-----y~lF~~~~r~~~~~~~p~~~~~~eisk~l~~~Wk~l---s-~~eK~~y~~~a~~~k~~y~~~~ 103 (113)
+|.+. |-||-+.....+....|+.+++.. +.=-+.|+.| | ++-++.|++...+....+..-|
T Consensus 29 ~ps~e~~L~LYaLyKQAt~Gd~~~~~Pg~~d~~~--~aKw~AW~~l~gms~eeA~~~YI~~v~~l~~k~~~t~ 99 (106)
T 2wh5_A 29 RPSYEEMLRFYSYYKQATMGPCLVPRPGFWDPIG--RYKWDAWNSLGKMSREEAMSAYITEMKLVAQKVIDTV 99 (106)
T ss_dssp CCCHHHHHHHHHHHHHHHHCSCCSCCCCTTCHHH--HHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred CCCHHHHHHHHHHHhhhccCCCCCCCCCcccHHH--HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhccC
Confidence 55555 444544443333334566444443 3335678654 4 4457778888777766655433
No 54
>2pfz_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.80A {Bordetella pertussis tohama I}
Probab=26.98 E-value=97 Score=21.82 Aligned_cols=22 Identities=5% Similarity=0.163 Sum_probs=17.5
Q ss_pred HhhhcCCChhhhhHHHHHHHHH
Q 033714 74 GEKWKSMSEADKAPYVAKAEKR 95 (113)
Q Consensus 74 ~~~Wk~ls~~eK~~y~~~a~~~ 95 (113)
...|..||++.++...+.+.+.
T Consensus 214 ~~~~~~L~~~~q~~i~~a~~~a 235 (301)
T 2pfz_A 214 KKAFDALDPATQQALKKAGAQA 235 (301)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHH
Confidence 4679999999999888866554
No 55
>3mhp_C TIC62_peptide, ferredoxin--NADP reductase, LEAF isozyme, chlorop; FNR, oxidoreductase, thylakoid membrane, proton-FLUX, poly P helix; HET: FAD; 1.70A {Pisum sativum}
Probab=26.60 E-value=8.1 Score=17.98 Aligned_cols=11 Identities=18% Similarity=0.600 Sum_probs=7.2
Q ss_pred CCCCCCHHHHH
Q 033714 38 PKRPASAFFVF 48 (113)
Q Consensus 38 PKrP~say~lF 48 (113)
..||+++|..|
T Consensus 2 ~~rPlSpy~~Y 12 (26)
T 3mhp_C 2 TEQPLSPYTAY 12 (26)
T ss_dssp CCCCSSTTTTB
T ss_pred CccccCccccc
Confidence 34778877654
No 56
>2cb8_A Acyl-COA-binding protein; acyl-coenzyme A binding protein, fatty acid, acetylation, alternative splicing, lipid-binding, transport; HET: MYA; 1.4A {Homo sapiens} PDB: 2fj9_A 1aca_A* 1hb6_A 1hb8_A 1nti_A 1nvl_A* 2abd_A 2fdq_A
Probab=26.55 E-value=71 Score=18.83 Aligned_cols=59 Identities=20% Similarity=0.378 Sum_probs=30.0
Q ss_pred CCCCCH-----HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcC---CC-hhhhhHHHHHHHHHHHHH
Q 033714 39 KRPASA-----FFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKS---MS-EADKAPYVAKAEKRKVEY 99 (113)
Q Consensus 39 KrP~sa-----y~lF~~~~r~~~~~~~p~~~~~~eisk~l~~~Wk~---ls-~~eK~~y~~~a~~~k~~y 99 (113)
.+|.+. |-||-+.....+-...|+.+++.. +.--+.|+. || ++-++.|++...+....|
T Consensus 18 ~~~~~~~~L~lYalyKQAt~Gd~~~~~Pg~~d~~~--~aKw~AW~~l~gms~eeA~~~Yi~~v~~l~~~~ 85 (87)
T 2cb8_A 18 TKPSDEEMLFIYGHYKQATVGDINTERPGMLDFTG--KAKWDAWNELKGTSKEDAMKAYINKVEELKKKY 85 (87)
T ss_dssp SCCCHHHHHHHHHHHHHHHTCSCCSCCCCTTCHHH--HHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHhhhhCCCCCCCCCcccHHH--HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHh
Confidence 355555 444444333223233465434333 333567865 45 444667777777665544
No 57
>4dng_A Uncharacterized aldehyde dehydrogenase ALDY; structural genomics, protein structure initiative, nysgrc, P biology; 2.50A {Bacillus subtilis}
Probab=25.81 E-value=1.1e+02 Score=23.46 Aligned_cols=36 Identities=17% Similarity=0.281 Sum_probs=28.2
Q ss_pred HHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHH
Q 033714 70 GKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKN 105 (113)
Q Consensus 70 sk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~ 105 (113)
++.....|..++.++|..+.....+..+++..++.+
T Consensus 53 A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~ 88 (485)
T 4dng_A 53 AQKAQKEWAKSTTEDRKAVLQKARGYLHENRDDIIM 88 (485)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456799999999999998888777777776664
No 58
>2w8n_A Succinate-semialdehyde dehydrogenase, mitochondrial; mitochondrion, oxidoreductase, transit peptide, disease mutation, SSA, NAD, ssadh; 2.00A {Homo sapiens} PDB: 2w8o_A 2w8p_A 2w8q_A 2w8r_A*
Probab=25.44 E-value=1.1e+02 Score=23.56 Aligned_cols=36 Identities=11% Similarity=0.255 Sum_probs=28.8
Q ss_pred HHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 033714 71 KAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106 (113)
Q Consensus 71 k~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y 106 (113)
+.....|..++.++|..+.....+...++.+++.+-
T Consensus 58 ~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 93 (487)
T 2w8n_A 58 YEAFCRWREVSAKERSSLLRKWYNLMIQNKDDLARI 93 (487)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334467999999999999988888888888777654
No 59
>2o2p_A Formyltetrahydrofolate dehydrogenase; aldehyde dehydrogenase, FDH, oxidoreductase; 1.70A {Rattus norvegicus} PDB: 2o2q_A* 2o2r_A* 3rho_A* 3rhm_A* 3rhj_A* 3rhq_A* 3rhp_A* 3rhr_A* 3rhl_A*
Probab=25.13 E-value=1.2e+02 Score=23.64 Aligned_cols=31 Identities=6% Similarity=0.265 Sum_probs=27.0
Q ss_pred hhcCCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 033714 76 KWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106 (113)
Q Consensus 76 ~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y 106 (113)
.|..++.++|..+.....+...++..++.+.
T Consensus 91 ~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 121 (517)
T 2o2p_A 91 LWGKINARDRGRLLYRLADVMEQHQEELATI 121 (517)
T ss_dssp GGGTSCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 7999999999999998888888888777664
No 60
>1vlu_A Gamma-glutamyl phosphate reductase; YOR323C, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.29A {Saccharomyces cerevisiae} SCOP: c.82.1.1
Probab=25.01 E-value=1.1e+02 Score=23.39 Aligned_cols=37 Identities=11% Similarity=0.188 Sum_probs=29.8
Q ss_pred HHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 033714 70 GKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106 (113)
Q Consensus 70 sk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y 106 (113)
++.....|..++.++|..+.....+...++..++.+-
T Consensus 23 A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 59 (468)
T 1vlu_A 23 ARKAGNILKTISNEGRSDILYKIHDALKANAHAIEEA 59 (468)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444567999999999999998888888888777664
No 61
>3my7_A Alcohol dehydrogenase/acetaldehyde dehydrogenase; ACDH, PSI, MCSG, structural genomics, midwest center for STR genomics; 2.30A {Vibrio parahaemolyticus}
Probab=24.74 E-value=1.2e+02 Score=23.03 Aligned_cols=36 Identities=11% Similarity=0.062 Sum_probs=27.5
Q ss_pred HHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHH
Q 033714 70 GKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKN 105 (113)
Q Consensus 70 sk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~ 105 (113)
++.....|..++.++|......+.....++..++.+
T Consensus 16 A~~A~~~w~~~~~~~R~~il~~~a~~l~~~~~~la~ 51 (452)
T 3my7_A 16 VKKAQEEFATYSQEQVDKIFRAASLAANQARIPLAQ 51 (452)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 344457799999999999988887777777666654
No 62
>4f3x_A Putative aldehyde dehydrogenase; structural genomics, protein structure initiative, nysgrc, P biology; HET: MSE NAD; 2.01A {Sinorhizobium meliloti} PDB: 4dal_A*
Probab=24.66 E-value=1.2e+02 Score=23.52 Aligned_cols=36 Identities=8% Similarity=0.142 Sum_probs=28.4
Q ss_pred HHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 033714 71 KAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106 (113)
Q Consensus 71 k~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y 106 (113)
+.....|..++.++|..+........+++..++.+.
T Consensus 72 ~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 107 (498)
T 4f3x_A 72 ERAFVGWSQTTPAERSNALLKIADAIEKEADEFAAL 107 (498)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 334467999999999999988888777777777654
No 63
>3ifg_A Succinate-semialdehyde dehydrogenase (NADP+); niaid,.infectious disease, ssgcid, seattle structural genomi for infectious disease; 2.70A {Burkholderia pseudomallei} PDB: 3ifh_Q
Probab=24.62 E-value=1.1e+02 Score=23.62 Aligned_cols=36 Identities=11% Similarity=0.194 Sum_probs=28.6
Q ss_pred HHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 033714 71 KAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106 (113)
Q Consensus 71 k~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y 106 (113)
+.....|..++.++|..+.....+..+++..++.+.
T Consensus 60 ~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 95 (484)
T 3ifg_A 60 QAAWAGWRMKTAKERAAILRRWFDLVIANSDDLALI 95 (484)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344467999999999999988888877777777654
No 64
>3nm8_A Tyrosinase; TYPE3 copper proteins, oxidoreductase; 2.00A {Bacillus megaterium} PDB: 3npy_A 3nq0_A 3nq1_A* 3ntm_A 4d87_A* 3nq5_A
Probab=24.50 E-value=46 Score=24.36 Aligned_cols=24 Identities=13% Similarity=0.149 Sum_probs=19.6
Q ss_pred HhhhcCCChhhhhHHHHHHHHHHH
Q 033714 74 GEKWKSMSEADKAPYVAKAEKRKV 97 (113)
Q Consensus 74 ~~~Wk~ls~~eK~~y~~~a~~~k~ 97 (113)
...|+.||++||..|.+.-...+.
T Consensus 8 Rke~~~Ls~~Er~~yi~Av~~l~~ 31 (303)
T 3nm8_A 8 RKNVLHLTDTEKRDFVRTVLILKE 31 (303)
T ss_dssp ECBGGGCCHHHHHHHHHHHHHHHH
T ss_pred ecchHHCCHHHHHHHHHHHHHHHh
Confidence 357999999999999987666554
No 65
>3ty7_A Putative aldehyde dehydrogenase SAV2122; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.40A {Staphylococcus aureus}
Probab=24.18 E-value=1.1e+02 Score=23.37 Aligned_cols=37 Identities=11% Similarity=0.084 Sum_probs=28.5
Q ss_pred HHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 033714 70 GKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106 (113)
Q Consensus 70 sk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y 106 (113)
++.....|..++.++|..+........+.+..++.+-
T Consensus 54 A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~ 90 (478)
T 3ty7_A 54 ADDVYLEFRHTSVKERQALLDKIVKEYENRKDDIVQA 90 (478)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3444567999999999999988887777777776653
No 66
>3fp5_A Acyl-COA binding protein; ACBP, cacao disease, fatty acid metabolism, lipid binding protein; HET: MES; 1.61A {Moniliophthora perniciosa} SCOP: a.11.1.0
Probab=24.09 E-value=1.2e+02 Score=18.64 Aligned_cols=50 Identities=28% Similarity=0.347 Sum_probs=29.8
Q ss_pred CCCCCCHHHHHHHHHhhhcCC---C-hhhhhHHHHHHHHHHHHHH-HHHHHHHHhhh
Q 033714 60 HPKNKSVAAVGKAGGEKWKSM---S-EADKAPYVAKAEKRKVEYE-KDMKNYNRRQV 111 (113)
Q Consensus 60 ~p~~~~~~eisk~l~~~Wk~l---s-~~eK~~y~~~a~~~k~~y~-~~~~~y~~~~~ 111 (113)
.|+.+++. .+.=-+.|+.| | ++-++.|++...+....|. .+..+|-+.++
T Consensus 50 ~Pg~~d~~--~raKw~AW~~l~gmS~eeA~~~YI~~v~~l~~~~~~~~~~~~~~~le 104 (106)
T 3fp5_A 50 RPGLMDFT--GKAKWDAWKSVEGTSKEVAYQKYVEKLLEILKKADTEESKKYIAEIE 104 (106)
T ss_dssp CCCTTCHH--HHHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHH
T ss_pred CCCccchH--HHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHh
Confidence 46543433 33344678654 4 5557889999888777654 44455555544
No 67
>1wnd_A Putative betaine aldehyde dehydrogenase; NADH, fluorescence, kinetics, oxidor; 2.10A {Escherichia coli} SCOP: c.82.1.1 PDB: 1wnb_A
Probab=23.97 E-value=1.2e+02 Score=23.42 Aligned_cols=36 Identities=14% Similarity=0.123 Sum_probs=29.0
Q ss_pred HHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 033714 71 KAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106 (113)
Q Consensus 71 k~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y 106 (113)
+.....|..++.++|..+.....+..+++..++.+-
T Consensus 70 ~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 105 (495)
T 1wnd_A 70 DAAFAEWGQTTPKVRAECLLKLADVIEENGQVFAEL 105 (495)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334467999999999999998888888888777653
No 68
>3v4c_A Aldehyde dehydrogenase (NADP+); structural genomics, PSI-biology, nysgrc, NEW YORK structura genomics research consortium; HET: PE4; 1.91A {Sinorhizobium meliloti}
Probab=23.92 E-value=1.2e+02 Score=23.52 Aligned_cols=37 Identities=5% Similarity=0.063 Sum_probs=28.9
Q ss_pred HHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 033714 70 GKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106 (113)
Q Consensus 70 sk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y 106 (113)
++.....|..++.++|..+........+++..++.+-
T Consensus 72 A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 108 (528)
T 3v4c_A 72 AEEAFWTYGYSSRKERAAFLRAIADEIEARAEAITEI 108 (528)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3444567999999999999988888777777776654
No 69
>1x2l_A CUT-like 2, homeobox protein CUX-2; CUT domain, human homeobox protein CUX-2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=23.79 E-value=84 Score=19.29 Aligned_cols=30 Identities=17% Similarity=0.418 Sum_probs=24.9
Q ss_pred CHHHHHHHHH--hhhcCCChhhhhHHHHHHHH
Q 033714 65 SVAAVGKAGG--EKWKSMSEADKAPYVAKAEK 94 (113)
Q Consensus 65 ~~~eisk~l~--~~Wk~ls~~eK~~y~~~a~~ 94 (113)
+-..++.+|. .-|..|+...|+.|..++.=
T Consensus 48 sQgtlS~lL~~PkpW~~L~~~Gre~yiRM~nW 79 (101)
T 1x2l_A 48 SQGSVSEILARPKPWRKLTVKGKEPFIKMKQF 79 (101)
T ss_dssp CHHHHHHHHHCCCCGGGCCHHHHHHHHHHHHH
T ss_pred ccchHHHHhcCCCCHHHHhHhhhHHHHHHHHH
Confidence 5667777777 78999999999999998764
No 70
>1st7_A ACBP, acyl-COA-binding protein; four helix bundle, transport protein; NMR {Saccharomyces cerevisiae}
Probab=23.73 E-value=1.1e+02 Score=17.89 Aligned_cols=59 Identities=15% Similarity=0.384 Sum_probs=29.7
Q ss_pred CCCCCH-----HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcCCC----hhhhhHHHHHHHHHHHHH
Q 033714 39 KRPASA-----FFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS----EADKAPYVAKAEKRKVEY 99 (113)
Q Consensus 39 KrP~sa-----y~lF~~~~r~~~~~~~p~~~~~~eisk~l~~~Wk~ls----~~eK~~y~~~a~~~k~~y 99 (113)
.+|.+. |-||-+.....+-...|+++++.. +.--+.|+.|. ++-++.|++...+....|
T Consensus 17 ~~~~~~~~L~lYalyKQAt~Gd~~~~~Pg~~d~~~--raKw~AW~~l~gms~eeA~~~YI~~v~~l~~~~ 84 (86)
T 1st7_A 17 TKPSTDELLELYALYKQATVGDNDKEKPGIFNMKD--RYKWEAWENLKGKSQEDAEKEYIALVDQLIAKY 84 (86)
T ss_dssp SCCCHHHHHHHHHHHHHHHHCSCCCCCCCSSCHHH--HHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHhhCCCCCCCCCccCHHH--HHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhhh
Confidence 456555 444444433333333466444433 33356786654 444666776666654443
No 71
>3i44_A Aldehyde dehydrogenase; oxidoreductase, structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Bartonella henselae}
Probab=23.70 E-value=1.2e+02 Score=23.39 Aligned_cols=36 Identities=22% Similarity=0.296 Sum_probs=28.3
Q ss_pred HHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 033714 71 KAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106 (113)
Q Consensus 71 k~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y 106 (113)
+.....|..++.++|..+........+++..++.+.
T Consensus 73 ~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 108 (497)
T 3i44_A 73 KKAFQTWKTTSPHERLGFVEKILEIYEKRSSDMAKT 108 (497)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334467999999999999988888777777776653
No 72
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=23.65 E-value=1.3e+02 Score=18.25 Aligned_cols=42 Identities=5% Similarity=0.151 Sum_probs=29.2
Q ss_pred HHHHHHHHHhhhcCCC---hhhhhHHHHHHHHHHHHHH---HHHHHHH
Q 033714 66 VAAVGKAGGEKWKSMS---EADKAPYVAKAEKRKVEYE---KDMKNYN 107 (113)
Q Consensus 66 ~~eisk~l~~~Wk~ls---~~eK~~y~~~a~~~k~~y~---~~~~~y~ 107 (113)
..+-...|...|.+|+ |+++..|.+..++....+. ....+|.
T Consensus 25 Lq~~~~~L~~~f~~L~sWqDqkr~kFee~fe~l~s~l~~f~e~a~e~v 72 (94)
T 3fx7_A 25 LREEVNSLSNHFHNLESWRDARRDKFSEVLDNLKSTFNEFDEAAQEQI 72 (94)
T ss_dssp HHHHHHHHHHHHHHCCSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccchHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHh
Confidence 4455566778888887 8899999998887755554 4444444
No 73
>4e4g_A Methylmalonate-semialdehyde dehydrogenase; structural genomics, protein structure INI nysgrc, PSI-biology; 2.90A {Sinorhizobium meliloti}
Probab=23.52 E-value=1.4e+02 Score=23.24 Aligned_cols=37 Identities=16% Similarity=0.226 Sum_probs=29.1
Q ss_pred HHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 033714 70 GKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106 (113)
Q Consensus 70 sk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y 106 (113)
++.....|..++.++|..+.....+..+++..++.+-
T Consensus 73 A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 109 (521)
T 4e4g_A 73 AKAAQPKWAATNPQRRARVFMKFVQLLNDNMNELAEM 109 (521)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444567999999999999988888878887777653
No 74
>3sza_A Aldehyde dehydrogenase, dimeric NADP-preferring; ALDH, rossmann fold, oxidoreductase; 1.48A {Homo sapiens} SCOP: c.82.1.1 PDB: 3szb_A* 1ad3_A*
Probab=23.44 E-value=1.2e+02 Score=23.15 Aligned_cols=36 Identities=8% Similarity=0.002 Sum_probs=28.0
Q ss_pred HHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 033714 71 KAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106 (113)
Q Consensus 71 k~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y 106 (113)
+.....|..++.++|..+.....+..+++..++.+-
T Consensus 28 ~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 63 (469)
T 3sza_A 28 RAAFSSGRTRPLQFRIQQLEALQRLIQEQEQELVGA 63 (469)
T ss_dssp HHHHHTTTTCSHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 334467999999999999988888777777776653
No 75
>1a4s_A ALDH, betaine aldehyde dehydrogenase; oxidoreductase, aldehyde oxidation; 2.10A {Gadus callarias} SCOP: c.82.1.1 PDB: 1bpw_A*
Probab=23.43 E-value=1.2e+02 Score=23.36 Aligned_cols=35 Identities=17% Similarity=0.287 Sum_probs=28.3
Q ss_pred HHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 033714 72 AGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106 (113)
Q Consensus 72 ~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y 106 (113)
.....|..++.++|..+.....+..+++..++.+-
T Consensus 69 ~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 103 (503)
T 1a4s_A 69 AAYLKWSKMAGIERSRVMLEAARIIRERRDNIAKL 103 (503)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33467999999999999988888888888777654
No 76
>1t90_A MMSDH, probable methylmalonate-semialdehyde dehydrogenase; oxidoreductase, NAD; HET: NAD; 2.50A {Bacillus subtilis}
Probab=23.37 E-value=1e+02 Score=23.68 Aligned_cols=36 Identities=6% Similarity=0.178 Sum_probs=28.6
Q ss_pred HHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 033714 71 KAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106 (113)
Q Consensus 71 k~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y 106 (113)
+.....|..++.++|..+.........++.+++.+-
T Consensus 53 ~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 88 (486)
T 1t90_A 53 AEAFKTWSKVAVPRRARILFNFQQLLSQHKEELAHL 88 (486)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334467999999999999988888888887776653
No 77
>3ros_A NAD-dependent aldehyde dehydrogenase; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Lactobacillus acidophilus}
Probab=23.36 E-value=1.3e+02 Score=23.19 Aligned_cols=37 Identities=19% Similarity=0.263 Sum_probs=28.8
Q ss_pred HHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 033714 70 GKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106 (113)
Q Consensus 70 sk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y 106 (113)
++.....|..++.++|..+.....+..+++..++.+-
T Consensus 35 A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 71 (484)
T 3ros_A 35 AHALYKKWRHEEPASRAEILHDIANALKEHEDELAKM 71 (484)
T ss_dssp HHHHHHHHTTSCTHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHhCcCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3444567999999999999988888877777776653
No 78
>2pfy_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.95A {Bordetella pertussis tohama I}
Probab=23.16 E-value=99 Score=21.74 Aligned_cols=22 Identities=5% Similarity=0.154 Sum_probs=17.3
Q ss_pred HhhhcCCChhhhhHHHHHHHHH
Q 033714 74 GEKWKSMSEADKAPYVAKAEKR 95 (113)
Q Consensus 74 ~~~Wk~ls~~eK~~y~~~a~~~ 95 (113)
...|..||++.++...+.+.+.
T Consensus 215 ~~~~~~L~~~~q~~i~~a~~~a 236 (301)
T 2pfy_A 215 KRAFQRLPAEVRQAVLDAGAKA 236 (301)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHH
Confidence 4679999999998888766554
No 79
>4h7n_A Aldehyde dehydrogenase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ALDH_ddaldh, COG1012, glyco_hydro_97; 2.00A {Anabaena variabilis}
Probab=23.04 E-value=57 Score=24.97 Aligned_cols=36 Identities=3% Similarity=0.265 Sum_probs=27.8
Q ss_pred HHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHH
Q 033714 70 GKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKN 105 (113)
Q Consensus 70 sk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~ 105 (113)
++.....|..++.++|..+.....+..+++.+++.+
T Consensus 37 A~~A~~~W~~~~~~~R~~~L~~~a~~l~~~~~ela~ 72 (474)
T 4h7n_A 37 ARRAQSRWQELGVEGRITTLQQWKQAILSRREQLTE 72 (474)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344457899999999999988888777777776654
No 80
>3b4w_A Aldehyde dehydrogenase; RV0223C-NAD complex, structural genomics, PSI-2, protein STR initiative; HET: NAD GOL; 1.80A {Mycobacterium tuberculosis}
Probab=22.96 E-value=1.2e+02 Score=23.39 Aligned_cols=31 Identities=23% Similarity=0.300 Sum_probs=26.6
Q ss_pred hhcCCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 033714 76 KWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106 (113)
Q Consensus 76 ~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y 106 (113)
.|..++.++|..+.........++.+++.+-
T Consensus 63 ~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 93 (495)
T 3b4w_A 63 PWPSTPPHERAAVIAAAVKMLAERKDLFTKL 93 (495)
T ss_dssp STTTSCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999988888888888777654
No 81
>3etf_A Putative succinate-semialdehyde dehydrogenase; center for ST genomics of infectious diseases, oxidoreductase, csgid; 1.85A {Salmonella typhimurium} PDB: 3efv_A
Probab=22.93 E-value=1.3e+02 Score=22.79 Aligned_cols=37 Identities=22% Similarity=0.287 Sum_probs=28.4
Q ss_pred HHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 033714 70 GKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106 (113)
Q Consensus 70 sk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y 106 (113)
++.....|..++.++|..+........+.+..++.+-
T Consensus 38 A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 74 (462)
T 3etf_A 38 AASGFKKWKMTSVAQRAQTLRDIGQALRAHAEEMAQC 74 (462)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444567999999999999988887777777766653
No 82
>2j6l_A Aldehyde dehydrogenase family 7 member A1; NAD, reductase, oxidoreductase, lysine catabolism; HET: NAI; 1.3A {Homo sapiens} PDB: 2jg7_A*
Probab=22.74 E-value=1.3e+02 Score=23.18 Aligned_cols=36 Identities=8% Similarity=0.158 Sum_probs=28.8
Q ss_pred HHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 033714 71 KAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106 (113)
Q Consensus 71 k~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y 106 (113)
+.....|..++.++|........+...++..++.+-
T Consensus 69 ~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 104 (500)
T 2j6l_A 69 REAWKIWADIPAPKRGEIVRQIGDALREKIQVLGSL 104 (500)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334467999999999999988888888888777653
No 83
>1uzb_A 1-pyrroline-5-carboxylate dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.4A {Thermus thermophilus} SCOP: c.82.1.1 PDB: 2eiw_A 2bhq_A* 2bhp_A* 2bja_A* 2bjk_A* 2ehq_A* 2ehu_A* 2eii_A* 2eit_A* 2ej6_A 2ejd_A* 2ejl_A 2iy6_A* 2j40_A* 2j5n_A*
Probab=22.71 E-value=1.3e+02 Score=23.30 Aligned_cols=35 Identities=14% Similarity=0.287 Sum_probs=28.5
Q ss_pred HHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 033714 72 AGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106 (113)
Q Consensus 72 ~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y 106 (113)
.....|..++.++|..+.....+....+..++.+-
T Consensus 85 ~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 119 (516)
T 1uzb_A 85 KAFKTWKDWPQEDRSRLLLKAAALMRRRKRELEAT 119 (516)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33467999999999999988888888888777654
No 84
>1wh6_A CUT-like 2, homeobox protein CUX-2; CUT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=22.51 E-value=50 Score=20.33 Aligned_cols=29 Identities=14% Similarity=0.416 Sum_probs=23.8
Q ss_pred CHHHHHHHHH--hhhcCCChhhhhHHHHHHH
Q 033714 65 SVAAVGKAGG--EKWKSMSEADKAPYVAKAE 93 (113)
Q Consensus 65 ~~~eisk~l~--~~Wk~ls~~eK~~y~~~a~ 93 (113)
+...++.+|. .-|+.|+...|+.|..++.
T Consensus 48 sqgtlSdlL~~PKpW~~L~~~Gre~fiRM~n 78 (101)
T 1wh6_A 48 SQGSVSDMLSRPKPWSKLTQKGREPFIRMQL 78 (101)
T ss_dssp CHHHHHHHHHSCCCTTTCCHHHHHHHHHHHH
T ss_pred CcCcHHHHhcCCCCHHHHhHHhHHHHHHHHH
Confidence 4556777777 7899999999999998875
No 85
>3lns_A Benzaldehyde dehydrogenase; oxidoreductase, NADP+, class 3 aldehyde dehyd adduct, covalent catalysis, mandelate racemase pathway; HET: ZBZ NAP; 2.50A {Pseudomonas putida} PDB: 3lv1_A*
Probab=22.27 E-value=1.1e+02 Score=23.27 Aligned_cols=48 Identities=6% Similarity=-0.056 Sum_probs=32.4
Q ss_pred HhCCCCCCHHHHHHHH------HhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 033714 58 KDHPKNKSVAAVGKAG------GEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106 (113)
Q Consensus 58 ~~~p~~~~~~eisk~l------~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y 106 (113)
.+.|.. +..+|...+ ...|..++.++|..+........+++..++.+-
T Consensus 20 ~~v~~~-~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 73 (457)
T 3lns_A 20 KHMNYL-SPAKIDSLFSAQKAYFATRATADVGFRKQSLERLKEAVINNKEALYSA 73 (457)
T ss_dssp ---CCC-CHHHHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred eecCCC-CHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 344552 555554443 467999999999999988888777777776653
No 86
>3k9d_A LMO1179 protein, aldehyde dehydrogenase; structural genomics, PSI-2, protein initiative; 2.00A {Listeria monocytogenes}
Probab=21.96 E-value=1.4e+02 Score=22.69 Aligned_cols=37 Identities=8% Similarity=0.088 Sum_probs=28.2
Q ss_pred HHHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHH
Q 033714 69 VGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKN 105 (113)
Q Consensus 69 isk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~ 105 (113)
-++.....|..++.++|............++..++.+
T Consensus 20 ~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~ 56 (464)
T 3k9d_A 20 SANKAQKELAAMSQQQIDTIVKAIADAGYGAREKLAK 56 (464)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3445557799999999999988877777777666654
No 87
>2imp_A Lactaldehyde dehydrogenase; protein-lactate-NADH ternary complex, oxidoreductase; HET: NAI; 2.10A {Escherichia coli} PDB: 2ilu_A* 2hg2_A* 2opx_A*
Probab=21.42 E-value=1.1e+02 Score=23.49 Aligned_cols=36 Identities=11% Similarity=0.346 Sum_probs=28.8
Q ss_pred HHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 033714 71 KAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106 (113)
Q Consensus 71 k~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y 106 (113)
+.....|..++.++|..+.........++..++.+-
T Consensus 54 ~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 89 (479)
T 2imp_A 54 ERAQPEWEALPAIERASWLRKISAGIRERASEISAL 89 (479)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334467999999999999988888888888777653
No 88
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=21.35 E-value=1.5e+02 Score=19.79 Aligned_cols=26 Identities=4% Similarity=-0.050 Sum_probs=14.8
Q ss_pred HhhhcCCChhhhhHHHHHHHHHHHHH
Q 033714 74 GEKWKSMSEADKAPYVAKAEKRKVEY 99 (113)
Q Consensus 74 ~~~Wk~ls~~eK~~y~~~a~~~k~~y 99 (113)
...|-+||+++++.+.++-++...+-
T Consensus 62 ~q~~LnLT~EQq~ql~~I~~e~r~~~ 87 (175)
T 3lay_A 62 QQGGSPLTTEQQATAQKIYDDYYTQT 87 (175)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCHHHHHHHHHHHHHHHHHH
Confidence 34567899999999887766544433
No 89
>3prl_A NADP-dependent glyceraldehyde-3-phosphate dehydro; structural genomics, protein structure initiative, dehydroge PSI-biology; 2.00A {Bacillus halodurans} PDB: 3rhh_A*
Probab=21.26 E-value=1.5e+02 Score=23.00 Aligned_cols=36 Identities=11% Similarity=0.092 Sum_probs=28.3
Q ss_pred HHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 033714 71 KAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106 (113)
Q Consensus 71 k~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y 106 (113)
+.....|..++.++|..+.....+..+++..++.+-
T Consensus 59 ~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 94 (505)
T 3prl_A 59 KDAQKIWKIRPIHERVDLLYAWADLLEERKEIIGEL 94 (505)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334467999999999999988888877777776653
No 90
>3ek1_A Aldehyde dehydrogenase; ssgcid, oxidoreductase, structural genomics; HET: MES; 2.10A {Brucella melitensis biovar ABORTUS2308}
Probab=21.08 E-value=1.1e+02 Score=23.77 Aligned_cols=37 Identities=11% Similarity=0.122 Sum_probs=28.8
Q ss_pred HHHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 033714 70 GKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106 (113)
Q Consensus 70 sk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y 106 (113)
++.....|..++.++|..+.....+..+++..++.+.
T Consensus 79 A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 115 (504)
T 3ek1_A 79 SAKALSGWAAKTAKERAGILRKWFDLIIANADDIALI 115 (504)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344467999999999999988888877777777654
No 91
>1euh_A NADP dependent non phosphorylating glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase; 1.82A {Streptococcus mutans} SCOP: c.82.1.1 PDB: 1qi6_A 2euh_A* 2id2_A* 2qe0_A* 2esd_A* 1qi1_A*
Probab=21.06 E-value=1.1e+02 Score=23.39 Aligned_cols=36 Identities=17% Similarity=0.368 Sum_probs=28.7
Q ss_pred HHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 033714 71 KAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106 (113)
Q Consensus 71 k~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y 106 (113)
+.....|..++.++|..+.....+..+++..++.+-
T Consensus 50 ~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 85 (475)
T 1euh_A 50 KKAQPAWRALSYIERAAYLHKVADILMRDKEKIGAI 85 (475)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHhhhCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 334467999999999999988888888888777653
No 92
>3qan_A 1-pyrroline-5-carboxylate dehydrogenase 1; proline oxidation, redox control, apoptosis, NAD binding, oxidoreductase, PSI-biology; 1.95A {Bacillus halodurans} PDB: 3rjl_A
Probab=21.00 E-value=1.5e+02 Score=23.22 Aligned_cols=36 Identities=11% Similarity=0.305 Sum_probs=28.5
Q ss_pred HHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 033714 71 KAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106 (113)
Q Consensus 71 k~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y 106 (113)
+.....|..++.++|..+........+++..++.+-
T Consensus 84 ~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 119 (538)
T 3qan_A 84 DEAFQTWRNVNPEERANILVKAAAIIRRRKHEFSAW 119 (538)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344467999999999999988888877777776653
No 93
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=20.72 E-value=1.1e+02 Score=18.33 Aligned_cols=41 Identities=20% Similarity=0.196 Sum_probs=27.0
Q ss_pred HHHHHHHHHhCCCCCC----HHHHHHHHHhhhcCCChhhhhHHHH
Q 033714 50 EEFREQYKKDHPKNKS----VAAVGKAGGEKWKSMSEADKAPYVA 90 (113)
Q Consensus 50 ~~~r~~~~~~~p~~~~----~~eisk~l~~~Wk~ls~~eK~~y~~ 90 (113)
+..|...+.-||+... ..+....|.+.|..|++..+..-.+
T Consensus 36 ~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD 80 (109)
T 2ctw_A 36 KSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYD 80 (109)
T ss_dssp HHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 3445556677898422 2578889999999988665544333
No 94
>2hpg_A ABC transporter, periplasmic substrate-binding protein; periplasmic binding protein, thermophilic proteins, trap- transport; HET: MSE; 1.90A {Thermotoga maritima}
Probab=20.64 E-value=94 Score=22.37 Aligned_cols=22 Identities=9% Similarity=0.148 Sum_probs=17.8
Q ss_pred HhhhcCCChhhhhHHHHHHHHH
Q 033714 74 GEKWKSMSEADKAPYVAKAEKR 95 (113)
Q Consensus 74 ~~~Wk~ls~~eK~~y~~~a~~~ 95 (113)
...|..||++.++...+.+.+.
T Consensus 235 ~~~~~~L~~e~q~~i~~a~~~a 256 (327)
T 2hpg_A 235 ADWFNSLPKEYQKIIEEEMDKA 256 (327)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHH
Confidence 4679999999999888866544
No 95
>1ez0_A ALDH, aldehyde dehydrogenase; nucleotide binding domain, NADP+, oxidoreductase; HET: NAP; 2.10A {Vibrio harveyi} SCOP: c.82.1.1 PDB: 1eyy_A*
Probab=20.57 E-value=1.1e+02 Score=23.60 Aligned_cols=36 Identities=6% Similarity=0.132 Sum_probs=28.6
Q ss_pred HHHHhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 033714 71 KAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106 (113)
Q Consensus 71 k~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y 106 (113)
+.....|..++.++|..+.....+..+++..++.+-
T Consensus 40 ~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 75 (510)
T 1ez0_A 40 AKVARDFRRLNNSKRASLLRTIASELEARSDDIIAR 75 (510)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 334467999999999999988888888888777654
Done!